Multiple sequence alignment - TraesCS3D01G220100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G220100 chr3D 100.000 4931 0 0 508 5438 300499823 300504753 0.000000e+00 9106.0
1 TraesCS3D01G220100 chr3D 100.000 263 0 0 1 263 300499316 300499578 2.280000e-133 486.0
2 TraesCS3D01G220100 chr3B 93.641 3145 119 27 646 3740 420924256 420921143 0.000000e+00 4625.0
3 TraesCS3D01G220100 chr3B 85.726 1205 105 18 3794 4952 420916725 420915542 0.000000e+00 1210.0
4 TraesCS3D01G220100 chr3B 91.903 494 32 6 4946 5436 420915500 420915012 0.000000e+00 684.0
5 TraesCS3D01G220100 chr3B 75.600 500 109 10 4025 4513 375167393 375167890 9.110000e-58 235.0
6 TraesCS3D01G220100 chr3A 95.516 2275 86 7 650 2913 434951865 434949596 0.000000e+00 3622.0
7 TraesCS3D01G220100 chr3A 90.198 857 33 16 3104 3941 434949538 434948714 0.000000e+00 1070.0
8 TraesCS3D01G220100 chr3A 86.626 987 100 23 3939 4902 434948109 434947132 0.000000e+00 1062.0
9 TraesCS3D01G220100 chr3A 92.179 358 25 3 4946 5302 434924325 434923970 2.260000e-138 503.0
10 TraesCS3D01G220100 chr3A 94.444 54 3 0 3009 3062 434949596 434949543 3.490000e-12 84.2
11 TraesCS3D01G220100 chr1D 94.783 345 18 0 1773 2117 246507436 246507780 6.200000e-149 538.0
12 TraesCS3D01G220100 chr1D 96.139 259 9 1 6 263 351111544 351111286 6.510000e-114 422.0
13 TraesCS3D01G220100 chr1D 94.444 144 8 0 1348 1491 246507293 246507436 7.090000e-54 222.0
14 TraesCS3D01G220100 chr1D 82.143 168 22 4 4320 4487 382911418 382911577 2.640000e-28 137.0
15 TraesCS3D01G220100 chr1D 90.909 66 6 0 1250 1315 246507165 246507230 7.500000e-14 89.8
16 TraesCS3D01G220100 chr1B 90.461 304 29 0 1764 2067 4178260 4178563 8.480000e-108 401.0
17 TraesCS3D01G220100 chr1B 76.429 420 84 11 4068 4481 495958183 495957773 4.270000e-51 213.0
18 TraesCS3D01G220100 chr1B 90.323 155 15 0 1913 2067 26361020 26361174 2.570000e-48 204.0
19 TraesCS3D01G220100 chr1B 93.548 93 6 0 1766 1858 26360929 26361021 7.340000e-29 139.0
20 TraesCS3D01G220100 chr7D 77.867 497 96 13 4026 4514 621141421 621141911 4.120000e-76 296.0
21 TraesCS3D01G220100 chr7D 75.000 236 55 3 4211 4444 549540536 549540303 7.450000e-19 106.0
22 TraesCS3D01G220100 chr5B 77.622 429 78 12 4076 4499 542842252 542841837 1.510000e-60 244.0
23 TraesCS3D01G220100 chr2B 78.512 363 71 7 4064 4421 217304048 217304408 1.180000e-56 231.0
24 TraesCS3D01G220100 chr2B 74.324 296 50 18 4071 4341 392612829 392613123 9.640000e-18 102.0
25 TraesCS3D01G220100 chr6D 76.540 422 89 9 4076 4491 10362664 10362247 7.090000e-54 222.0
26 TraesCS3D01G220100 chr7B 78.896 308 57 6 4188 4492 163001542 163001240 9.240000e-48 202.0
27 TraesCS3D01G220100 chr2A 74.723 451 95 14 4076 4515 22064294 22063852 3.350000e-42 183.0
28 TraesCS3D01G220100 chr4D 73.856 459 90 19 4078 4509 39202495 39202950 7.290000e-34 156.0
29 TraesCS3D01G220100 chr5A 78.182 220 41 6 4298 4514 633648772 633648557 3.420000e-27 134.0
30 TraesCS3D01G220100 chr5A 76.887 212 43 5 4188 4395 450878533 450878742 1.240000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G220100 chr3D 300499316 300504753 5437 False 4796.000000 9106 100.000000 1 5438 2 chr3D.!!$F1 5437
1 TraesCS3D01G220100 chr3B 420921143 420924256 3113 True 4625.000000 4625 93.641000 646 3740 1 chr3B.!!$R1 3094
2 TraesCS3D01G220100 chr3B 420915012 420916725 1713 True 947.000000 1210 88.814500 3794 5436 2 chr3B.!!$R2 1642
3 TraesCS3D01G220100 chr3A 434947132 434951865 4733 True 1459.550000 3622 91.696000 650 4902 4 chr3A.!!$R2 4252
4 TraesCS3D01G220100 chr1D 246507165 246507780 615 False 283.266667 538 93.378667 1250 2117 3 chr1D.!!$F2 867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 554 0.032515 TGAGGCCTTGAGGTCGGATA 60.033 55.0 6.77 0.00 46.49 2.59 F
564 565 0.038526 GGTCGGATACATGCGGGTAG 60.039 60.0 3.25 0.00 42.14 3.18 F
612 613 0.250338 GACAGGTTGCGGGAGAGTTT 60.250 55.0 0.00 0.00 0.00 2.66 F
2004 2054 0.317160 TCGATGCCGTTCTTGACTGT 59.683 50.0 0.00 0.00 37.05 3.55 F
2661 2711 0.030101 ACTCTCGAGCTTAGCATCGC 59.970 55.0 7.81 0.18 38.79 4.58 F
4003 4722 0.323629 GATCCCAACCCTTGTCGACA 59.676 55.0 15.76 15.76 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2039 0.874175 CGACACAGTCAAGAACGGCA 60.874 55.000 0.00 0.0 32.09 5.69 R
2013 2063 1.200948 GTGAAGATCTTGGGCTGCAAC 59.799 52.381 14.00 0.0 0.00 4.17 R
2182 2232 1.371022 CGATGTCGCAGATCTCCCG 60.371 63.158 0.00 0.0 40.67 5.14 R
3872 3984 0.249573 ATCGGTGGTTTTGACGACGT 60.250 50.000 0.00 0.0 38.24 4.34 R
4100 4834 0.561184 ATCACCGGGATGGGACTAGA 59.439 55.000 6.32 0.0 44.64 2.43 R
4844 5603 0.034059 CAGCCTTCTCTTCGGTGTGT 59.966 55.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 4.496336 CCTAGCCTGCCAGCCACC 62.496 72.222 0.00 0.00 0.00 4.61
61 62 4.845580 CTAGCCTGCCAGCCACCG 62.846 72.222 0.00 0.00 0.00 4.94
80 81 3.730761 CTGCCGCAGCACCAGAAC 61.731 66.667 7.61 0.00 46.52 3.01
85 86 4.329545 GCAGCACCAGAACGGGGA 62.330 66.667 0.00 0.00 43.25 4.81
86 87 2.429930 CAGCACCAGAACGGGGAA 59.570 61.111 0.00 0.00 43.25 3.97
87 88 1.966451 CAGCACCAGAACGGGGAAC 60.966 63.158 0.00 0.00 43.25 3.62
88 89 3.047877 GCACCAGAACGGGGAACG 61.048 66.667 0.00 0.00 43.25 3.95
89 90 2.358247 CACCAGAACGGGGAACGG 60.358 66.667 0.00 0.00 43.25 4.44
90 91 2.874664 CACCAGAACGGGGAACGGA 61.875 63.158 0.00 0.00 43.25 4.69
91 92 2.781595 CACCAGAACGGGGAACGGAG 62.782 65.000 0.00 0.00 43.25 4.63
115 116 1.732308 GTCACGGACGATAGGACCC 59.268 63.158 0.00 0.00 43.77 4.46
116 117 1.454479 TCACGGACGATAGGACCCC 60.454 63.158 0.00 0.00 43.77 4.95
117 118 2.517875 ACGGACGATAGGACCCCG 60.518 66.667 0.00 0.00 41.92 5.73
118 119 3.974757 CGGACGATAGGACCCCGC 61.975 72.222 0.00 0.00 43.77 6.13
119 120 3.974757 GGACGATAGGACCCCGCG 61.975 72.222 0.00 0.00 43.77 6.46
120 121 4.642542 GACGATAGGACCCCGCGC 62.643 72.222 0.00 0.00 43.77 6.86
144 145 4.112341 GACGACGTCCGGGACCAG 62.112 72.222 21.06 14.27 43.93 4.00
147 148 4.736896 GACGTCCGGGACCAGCAC 62.737 72.222 21.06 5.02 0.00 4.40
150 151 3.717294 GTCCGGGACCAGCACCAT 61.717 66.667 16.55 0.00 0.00 3.55
151 152 3.399181 TCCGGGACCAGCACCATC 61.399 66.667 0.00 0.00 0.00 3.51
152 153 4.838152 CCGGGACCAGCACCATCG 62.838 72.222 0.00 0.00 0.00 3.84
153 154 3.770040 CGGGACCAGCACCATCGA 61.770 66.667 0.00 0.00 0.00 3.59
154 155 2.911143 GGGACCAGCACCATCGAT 59.089 61.111 0.00 0.00 0.00 3.59
155 156 1.227674 GGGACCAGCACCATCGATC 60.228 63.158 0.00 0.00 0.00 3.69
156 157 1.690219 GGGACCAGCACCATCGATCT 61.690 60.000 0.00 0.00 0.00 2.75
157 158 0.249657 GGACCAGCACCATCGATCTC 60.250 60.000 0.00 0.00 0.00 2.75
158 159 0.461548 GACCAGCACCATCGATCTCA 59.538 55.000 0.00 0.00 0.00 3.27
159 160 0.463204 ACCAGCACCATCGATCTCAG 59.537 55.000 0.00 0.00 0.00 3.35
160 161 0.879400 CCAGCACCATCGATCTCAGC 60.879 60.000 0.00 0.00 0.00 4.26
161 162 0.179092 CAGCACCATCGATCTCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
162 163 0.104487 AGCACCATCGATCTCAGCAG 59.896 55.000 0.00 0.00 0.00 4.24
163 164 0.879400 GCACCATCGATCTCAGCAGG 60.879 60.000 0.00 0.00 0.00 4.85
164 165 0.249784 CACCATCGATCTCAGCAGGG 60.250 60.000 0.00 0.00 0.00 4.45
165 166 1.370437 CCATCGATCTCAGCAGGGG 59.630 63.158 0.00 0.00 0.00 4.79
166 167 1.301558 CATCGATCTCAGCAGGGGC 60.302 63.158 0.00 0.00 41.61 5.80
167 168 2.515071 ATCGATCTCAGCAGGGGCC 61.515 63.158 0.00 0.00 42.56 5.80
168 169 2.961559 ATCGATCTCAGCAGGGGCCT 62.962 60.000 0.84 0.00 42.56 5.19
169 170 2.509916 GATCTCAGCAGGGGCCTG 59.490 66.667 0.84 0.00 46.15 4.85
170 171 3.095163 ATCTCAGCAGGGGCCTGG 61.095 66.667 0.84 0.00 43.77 4.45
196 197 4.688966 GGCGGCGGAGATGGGATC 62.689 72.222 9.78 0.00 0.00 3.36
202 203 2.653702 GGAGATGGGATCGCCGAG 59.346 66.667 7.38 0.00 39.44 4.63
203 204 2.653702 GAGATGGGATCGCCGAGG 59.346 66.667 7.38 0.00 33.83 4.63
204 205 1.903890 GAGATGGGATCGCCGAGGA 60.904 63.158 7.38 0.00 33.83 3.71
205 206 1.872197 GAGATGGGATCGCCGAGGAG 61.872 65.000 7.38 0.00 33.83 3.69
206 207 3.581687 GATGGGATCGCCGAGGAGC 62.582 68.421 7.38 0.00 33.83 4.70
216 217 4.856607 CGAGGAGCCGGACGAAGC 62.857 72.222 5.05 0.00 0.00 3.86
217 218 4.516195 GAGGAGCCGGACGAAGCC 62.516 72.222 5.05 0.00 0.00 4.35
225 226 4.856607 GGACGAAGCCGCGGAGAG 62.857 72.222 33.48 18.76 39.95 3.20
257 258 4.175337 CCATGGTGGACGCCGGAT 62.175 66.667 5.05 0.00 40.96 4.18
258 259 2.588877 CATGGTGGACGCCGGATC 60.589 66.667 5.05 0.39 0.00 3.36
259 260 3.861797 ATGGTGGACGCCGGATCC 61.862 66.667 16.45 16.45 36.70 3.36
536 537 4.577834 GGTTTTCCTTCAAACCGAATGA 57.422 40.909 0.00 0.00 44.87 2.57
537 538 4.546570 GGTTTTCCTTCAAACCGAATGAG 58.453 43.478 0.00 0.00 44.87 2.90
538 539 4.546570 GTTTTCCTTCAAACCGAATGAGG 58.453 43.478 0.00 0.00 31.01 3.86
539 540 1.821216 TCCTTCAAACCGAATGAGGC 58.179 50.000 0.00 0.00 31.69 4.70
540 541 0.811281 CCTTCAAACCGAATGAGGCC 59.189 55.000 0.00 0.00 31.69 5.19
541 542 1.614317 CCTTCAAACCGAATGAGGCCT 60.614 52.381 3.86 3.86 31.69 5.19
542 543 2.162681 CTTCAAACCGAATGAGGCCTT 58.837 47.619 6.77 0.00 31.69 4.35
543 544 1.533625 TCAAACCGAATGAGGCCTTG 58.466 50.000 6.77 0.00 33.69 3.61
544 545 1.073125 TCAAACCGAATGAGGCCTTGA 59.927 47.619 6.77 0.00 35.40 3.02
545 546 1.470098 CAAACCGAATGAGGCCTTGAG 59.530 52.381 6.77 0.00 32.26 3.02
546 547 0.035056 AACCGAATGAGGCCTTGAGG 60.035 55.000 6.77 9.44 38.53 3.86
547 548 1.201429 ACCGAATGAGGCCTTGAGGT 61.201 55.000 6.77 10.14 37.57 3.85
548 549 0.462759 CCGAATGAGGCCTTGAGGTC 60.463 60.000 6.77 0.00 40.99 3.85
549 550 0.807667 CGAATGAGGCCTTGAGGTCG 60.808 60.000 6.77 8.78 46.49 4.79
550 551 0.462759 GAATGAGGCCTTGAGGTCGG 60.463 60.000 6.77 0.00 46.49 4.79
551 552 0.909610 AATGAGGCCTTGAGGTCGGA 60.910 55.000 6.77 0.00 46.49 4.55
552 553 0.692419 ATGAGGCCTTGAGGTCGGAT 60.692 55.000 6.77 0.00 46.49 4.18
553 554 0.032515 TGAGGCCTTGAGGTCGGATA 60.033 55.000 6.77 0.00 46.49 2.59
554 555 0.389757 GAGGCCTTGAGGTCGGATAC 59.610 60.000 6.77 0.00 46.49 2.24
555 556 0.325296 AGGCCTTGAGGTCGGATACA 60.325 55.000 0.00 0.00 46.49 2.29
556 557 0.759346 GGCCTTGAGGTCGGATACAT 59.241 55.000 0.00 0.00 37.57 2.29
557 558 1.541233 GGCCTTGAGGTCGGATACATG 60.541 57.143 0.00 0.00 37.57 3.21
558 559 1.871080 CCTTGAGGTCGGATACATGC 58.129 55.000 0.00 0.00 0.00 4.06
559 560 1.491670 CTTGAGGTCGGATACATGCG 58.508 55.000 0.00 0.00 43.28 4.73
560 561 0.104120 TTGAGGTCGGATACATGCGG 59.896 55.000 3.25 0.00 42.14 5.69
561 562 1.006102 GAGGTCGGATACATGCGGG 60.006 63.158 3.25 0.00 42.14 6.13
562 563 1.745320 GAGGTCGGATACATGCGGGT 61.745 60.000 3.25 0.00 42.14 5.28
563 564 0.468585 AGGTCGGATACATGCGGGTA 60.469 55.000 3.25 0.00 42.14 3.69
564 565 0.038526 GGTCGGATACATGCGGGTAG 60.039 60.000 3.25 0.00 42.14 3.18
576 577 1.763634 GCGGGTAGCGTTAGTATGAC 58.236 55.000 0.00 0.00 35.41 3.06
577 578 1.601412 GCGGGTAGCGTTAGTATGACC 60.601 57.143 0.00 0.00 35.41 4.02
578 579 1.334419 CGGGTAGCGTTAGTATGACCG 60.334 57.143 0.00 0.00 0.00 4.79
579 580 1.949525 GGGTAGCGTTAGTATGACCGA 59.050 52.381 0.00 0.00 0.00 4.69
580 581 2.287248 GGGTAGCGTTAGTATGACCGAC 60.287 54.545 0.00 0.00 0.00 4.79
581 582 2.615912 GGTAGCGTTAGTATGACCGACT 59.384 50.000 0.00 0.00 0.00 4.18
582 583 3.065925 GGTAGCGTTAGTATGACCGACTT 59.934 47.826 0.00 0.00 0.00 3.01
583 584 3.417690 AGCGTTAGTATGACCGACTTC 57.582 47.619 0.00 0.00 0.00 3.01
584 585 2.107178 GCGTTAGTATGACCGACTTCG 58.893 52.381 0.00 0.00 39.44 3.79
585 586 2.476854 GCGTTAGTATGACCGACTTCGT 60.477 50.000 0.00 0.00 37.74 3.85
586 587 3.096461 CGTTAGTATGACCGACTTCGTG 58.904 50.000 0.00 0.00 37.74 4.35
587 588 3.425359 CGTTAGTATGACCGACTTCGTGT 60.425 47.826 0.00 0.00 37.74 4.49
588 589 4.479619 GTTAGTATGACCGACTTCGTGTT 58.520 43.478 0.00 0.00 37.74 3.32
589 590 3.213249 AGTATGACCGACTTCGTGTTC 57.787 47.619 0.00 0.00 37.74 3.18
590 591 1.909532 GTATGACCGACTTCGTGTTCG 59.090 52.381 0.00 0.00 37.74 3.95
591 592 1.007336 ATGACCGACTTCGTGTTCGC 61.007 55.000 0.00 0.00 37.74 4.70
592 593 2.704193 GACCGACTTCGTGTTCGCG 61.704 63.158 0.00 0.00 37.74 5.87
593 594 3.467119 CCGACTTCGTGTTCGCGG 61.467 66.667 6.13 0.00 37.74 6.46
594 595 2.427905 CGACTTCGTGTTCGCGGA 60.428 61.111 6.13 0.00 36.96 5.54
595 596 2.704193 CGACTTCGTGTTCGCGGAC 61.704 63.158 11.62 11.62 36.96 4.79
596 597 1.659335 GACTTCGTGTTCGCGGACA 60.659 57.895 18.26 18.26 36.96 4.02
597 598 1.606350 GACTTCGTGTTCGCGGACAG 61.606 60.000 23.22 15.15 36.96 3.51
598 599 2.355363 TTCGTGTTCGCGGACAGG 60.355 61.111 29.66 29.66 36.90 4.00
599 600 3.141522 TTCGTGTTCGCGGACAGGT 62.142 57.895 32.49 0.00 36.90 4.00
600 601 2.632136 TTCGTGTTCGCGGACAGGTT 62.632 55.000 32.49 0.00 36.90 3.50
601 602 2.935955 GTGTTCGCGGACAGGTTG 59.064 61.111 23.22 0.00 0.00 3.77
602 603 2.970324 TGTTCGCGGACAGGTTGC 60.970 61.111 18.26 0.00 0.00 4.17
608 609 3.691342 CGGACAGGTTGCGGGAGA 61.691 66.667 0.00 0.00 34.92 3.71
609 610 2.266055 GGACAGGTTGCGGGAGAG 59.734 66.667 0.00 0.00 0.00 3.20
610 611 2.584391 GGACAGGTTGCGGGAGAGT 61.584 63.158 0.00 0.00 0.00 3.24
611 612 1.371558 GACAGGTTGCGGGAGAGTT 59.628 57.895 0.00 0.00 0.00 3.01
612 613 0.250338 GACAGGTTGCGGGAGAGTTT 60.250 55.000 0.00 0.00 0.00 2.66
613 614 0.535102 ACAGGTTGCGGGAGAGTTTG 60.535 55.000 0.00 0.00 0.00 2.93
614 615 1.600916 AGGTTGCGGGAGAGTTTGC 60.601 57.895 0.00 0.00 0.00 3.68
615 616 2.626780 GGTTGCGGGAGAGTTTGCC 61.627 63.158 0.00 0.00 0.00 4.52
616 617 1.600916 GTTGCGGGAGAGTTTGCCT 60.601 57.895 0.00 0.00 34.56 4.75
617 618 0.321298 GTTGCGGGAGAGTTTGCCTA 60.321 55.000 0.00 0.00 34.56 3.93
618 619 0.618458 TTGCGGGAGAGTTTGCCTAT 59.382 50.000 0.00 0.00 34.56 2.57
619 620 0.618458 TGCGGGAGAGTTTGCCTATT 59.382 50.000 0.00 0.00 34.56 1.73
620 621 1.300481 GCGGGAGAGTTTGCCTATTC 58.700 55.000 0.00 0.00 34.56 1.75
621 622 1.406887 GCGGGAGAGTTTGCCTATTCA 60.407 52.381 0.00 0.00 34.56 2.57
622 623 2.746472 GCGGGAGAGTTTGCCTATTCAT 60.746 50.000 0.00 0.00 34.56 2.57
623 624 3.134458 CGGGAGAGTTTGCCTATTCATC 58.866 50.000 0.00 0.00 34.56 2.92
624 625 3.432186 CGGGAGAGTTTGCCTATTCATCA 60.432 47.826 0.00 0.00 34.56 3.07
625 626 3.879892 GGGAGAGTTTGCCTATTCATCAC 59.120 47.826 0.00 0.00 33.76 3.06
626 627 4.517285 GGAGAGTTTGCCTATTCATCACA 58.483 43.478 0.00 0.00 0.00 3.58
627 628 4.943705 GGAGAGTTTGCCTATTCATCACAA 59.056 41.667 0.00 0.00 0.00 3.33
628 629 5.591877 GGAGAGTTTGCCTATTCATCACAAT 59.408 40.000 0.00 0.00 0.00 2.71
629 630 6.238593 GGAGAGTTTGCCTATTCATCACAATC 60.239 42.308 0.00 0.00 0.00 2.67
630 631 6.421485 AGAGTTTGCCTATTCATCACAATCT 58.579 36.000 0.00 0.00 0.00 2.40
631 632 7.568349 AGAGTTTGCCTATTCATCACAATCTA 58.432 34.615 0.00 0.00 0.00 1.98
632 633 7.497249 AGAGTTTGCCTATTCATCACAATCTAC 59.503 37.037 0.00 0.00 0.00 2.59
633 634 7.341805 AGTTTGCCTATTCATCACAATCTACT 58.658 34.615 0.00 0.00 0.00 2.57
634 635 7.497249 AGTTTGCCTATTCATCACAATCTACTC 59.503 37.037 0.00 0.00 0.00 2.59
635 636 6.484364 TGCCTATTCATCACAATCTACTCA 57.516 37.500 0.00 0.00 0.00 3.41
636 637 7.071069 TGCCTATTCATCACAATCTACTCAT 57.929 36.000 0.00 0.00 0.00 2.90
637 638 7.157347 TGCCTATTCATCACAATCTACTCATC 58.843 38.462 0.00 0.00 0.00 2.92
638 639 7.157347 GCCTATTCATCACAATCTACTCATCA 58.843 38.462 0.00 0.00 0.00 3.07
639 640 7.117523 GCCTATTCATCACAATCTACTCATCAC 59.882 40.741 0.00 0.00 0.00 3.06
640 641 8.366401 CCTATTCATCACAATCTACTCATCACT 58.634 37.037 0.00 0.00 0.00 3.41
641 642 9.409312 CTATTCATCACAATCTACTCATCACTC 57.591 37.037 0.00 0.00 0.00 3.51
642 643 5.825507 TCATCACAATCTACTCATCACTCG 58.174 41.667 0.00 0.00 0.00 4.18
643 644 5.358160 TCATCACAATCTACTCATCACTCGT 59.642 40.000 0.00 0.00 0.00 4.18
644 645 5.644977 TCACAATCTACTCATCACTCGTT 57.355 39.130 0.00 0.00 0.00 3.85
645 646 5.641709 TCACAATCTACTCATCACTCGTTC 58.358 41.667 0.00 0.00 0.00 3.95
646 647 5.416013 TCACAATCTACTCATCACTCGTTCT 59.584 40.000 0.00 0.00 0.00 3.01
647 648 5.741510 CACAATCTACTCATCACTCGTTCTC 59.258 44.000 0.00 0.00 0.00 2.87
648 649 5.416013 ACAATCTACTCATCACTCGTTCTCA 59.584 40.000 0.00 0.00 0.00 3.27
732 738 2.224670 TGCTCCCACGGTTTTACAGAAT 60.225 45.455 0.00 0.00 0.00 2.40
736 742 4.208746 TCCCACGGTTTTACAGAATTTGT 58.791 39.130 0.00 0.22 43.96 2.83
787 793 4.456535 TCAGAGACAAAATCGGGAAACAA 58.543 39.130 0.00 0.00 0.00 2.83
834 842 2.359967 GGTGGTTCCTCTCCTCGGG 61.360 68.421 0.00 0.00 0.00 5.14
884 903 4.323477 CCTTCGTTCCCGTGGCCA 62.323 66.667 0.00 0.00 35.01 5.36
976 996 3.948086 GACGTCACTCGCTCACCCG 62.948 68.421 11.55 0.00 44.19 5.28
984 1004 3.753434 CGCTCACCCGCTCACTCT 61.753 66.667 0.00 0.00 0.00 3.24
992 1012 2.427453 CACCCGCTCACTCTACTACATT 59.573 50.000 0.00 0.00 0.00 2.71
1126 1146 3.672503 AGTGGCCCATGGAACCCC 61.673 66.667 15.22 5.67 0.00 4.95
1485 1535 1.947146 CGTCGCCGTTCACTTCACA 60.947 57.895 0.00 0.00 0.00 3.58
1989 2039 2.345244 GATCAGGCGCCCATCGAT 59.655 61.111 26.15 19.87 41.67 3.59
1998 2048 1.819632 GCCCATCGATGCCGTTCTT 60.820 57.895 20.25 0.00 37.05 2.52
2004 2054 0.317160 TCGATGCCGTTCTTGACTGT 59.683 50.000 0.00 0.00 37.05 3.55
2013 2063 0.318699 TTCTTGACTGTGTCGCCTCG 60.319 55.000 0.00 0.00 34.95 4.63
2112 2162 1.015109 CGCTCTTCTACTACTCGGCA 58.985 55.000 0.00 0.00 0.00 5.69
2121 2171 1.174783 ACTACTCGGCAGTGTTCGAT 58.825 50.000 10.24 5.29 34.77 3.59
2127 2177 1.272490 TCGGCAGTGTTCGATTCTCTT 59.728 47.619 6.62 0.00 0.00 2.85
2182 2232 2.336809 CCGAGGCGTATCTCCAGC 59.663 66.667 0.00 0.00 0.00 4.85
2589 2639 3.421888 GTGCGAGCAACATGTTTTTGTAG 59.578 43.478 8.77 0.00 0.00 2.74
2661 2711 0.030101 ACTCTCGAGCTTAGCATCGC 59.970 55.000 7.81 0.18 38.79 4.58
2665 2715 0.661483 TCGAGCTTAGCATCGCATCG 60.661 55.000 16.84 11.62 38.79 3.84
2706 2757 4.456566 GCCAAACCGAGTGGAGTATTTTTA 59.543 41.667 3.47 0.00 38.54 1.52
2788 2842 5.755813 GCATGAGCACAGTATAGAAAATGG 58.244 41.667 0.00 0.00 41.58 3.16
2845 2899 3.525800 TCCCTTGGCTTTTTCTAAGCT 57.474 42.857 9.13 0.00 42.62 3.74
2856 2910 9.691362 TGGCTTTTTCTAAGCTTAAACAAATAG 57.309 29.630 7.74 11.29 42.62 1.73
2857 2911 9.692749 GGCTTTTTCTAAGCTTAAACAAATAGT 57.307 29.630 7.74 0.00 42.62 2.12
2891 2948 3.569277 CACACAAATCCACACCTTGATGA 59.431 43.478 0.00 0.00 0.00 2.92
2898 2955 1.806542 CCACACCTTGATGAAACGAGG 59.193 52.381 0.00 0.00 44.60 4.63
2917 2974 2.117910 GGCTCAACGAATCTAGCGTAC 58.882 52.381 0.00 0.00 41.75 3.67
2922 2979 5.152923 TCAACGAATCTAGCGTACTACTG 57.847 43.478 0.00 0.00 41.75 2.74
2923 2980 4.633126 TCAACGAATCTAGCGTACTACTGT 59.367 41.667 0.00 0.00 41.75 3.55
2924 2981 5.812127 TCAACGAATCTAGCGTACTACTGTA 59.188 40.000 0.00 0.00 41.75 2.74
2925 2982 5.649602 ACGAATCTAGCGTACTACTGTAC 57.350 43.478 0.00 0.00 44.03 2.90
2978 3037 4.151883 TGATGAAAAGCCAGCCTAGTTTT 58.848 39.130 0.00 0.00 0.00 2.43
3007 3066 1.127701 GATGAATCGCTGAGAGTCGC 58.872 55.000 4.53 0.00 46.11 5.19
3061 3120 1.822613 CTGCAAGCCGAGCCATCAT 60.823 57.895 0.00 0.00 0.00 2.45
3087 3146 4.697756 CCCTGCGAGCCAAACCGA 62.698 66.667 0.00 0.00 0.00 4.69
3088 3147 3.423154 CCTGCGAGCCAAACCGAC 61.423 66.667 0.00 0.00 0.00 4.79
3089 3148 3.777925 CTGCGAGCCAAACCGACG 61.778 66.667 0.00 0.00 0.00 5.12
3090 3149 4.287781 TGCGAGCCAAACCGACGA 62.288 61.111 0.00 0.00 0.00 4.20
3091 3150 2.813908 GCGAGCCAAACCGACGAT 60.814 61.111 0.00 0.00 0.00 3.73
3092 3151 3.081133 CGAGCCAAACCGACGATG 58.919 61.111 0.00 0.00 0.00 3.84
3093 3152 1.445410 CGAGCCAAACCGACGATGA 60.445 57.895 0.00 0.00 0.00 2.92
3094 3153 1.683790 CGAGCCAAACCGACGATGAC 61.684 60.000 0.00 0.00 0.00 3.06
3095 3154 1.359459 GAGCCAAACCGACGATGACC 61.359 60.000 0.00 0.00 0.00 4.02
3096 3155 2.736682 GCCAAACCGACGATGACCG 61.737 63.158 0.00 0.00 45.44 4.79
3106 3165 1.807165 CGATGACCGTGCCTCACTG 60.807 63.158 0.00 0.00 31.34 3.66
3336 3401 0.736325 CGGTTGAGCGGATTCTTCGT 60.736 55.000 0.00 0.00 0.00 3.85
3473 3538 3.834489 AGGCACTAGTAGCTACTACGA 57.166 47.619 26.36 11.55 41.37 3.43
3474 3539 4.148128 AGGCACTAGTAGCTACTACGAA 57.852 45.455 26.36 11.21 41.37 3.85
3475 3540 3.876320 AGGCACTAGTAGCTACTACGAAC 59.124 47.826 26.36 17.39 41.37 3.95
3476 3541 3.003171 GGCACTAGTAGCTACTACGAACC 59.997 52.174 26.36 20.41 41.37 3.62
3477 3542 3.876320 GCACTAGTAGCTACTACGAACCT 59.124 47.826 26.36 6.39 41.37 3.50
3478 3543 4.335037 GCACTAGTAGCTACTACGAACCTT 59.665 45.833 26.36 5.70 41.37 3.50
3488 3555 5.007921 GCTACTACGAACCTTTGTGGAAAAA 59.992 40.000 0.00 0.00 39.71 1.94
3863 3975 1.236616 CCGTTGGATCACAGCAGCAA 61.237 55.000 0.00 0.00 0.00 3.91
3871 3983 4.254709 ACAGCAGCAAGCCGGTGA 62.255 61.111 13.71 0.00 46.47 4.02
3872 3984 2.979676 CAGCAGCAAGCCGGTGAA 60.980 61.111 1.90 0.00 46.47 3.18
3881 3993 2.632136 AAGCCGGTGAACGTCGTCAA 62.632 55.000 1.90 0.00 42.24 3.18
3901 4013 2.903357 CCACCGATGGGACCTCTG 59.097 66.667 0.00 0.00 43.04 3.35
3902 4014 2.735772 CCACCGATGGGACCTCTGG 61.736 68.421 0.00 0.00 43.04 3.86
3904 4016 1.686110 ACCGATGGGACCTCTGGAC 60.686 63.158 0.00 0.00 36.97 4.02
3979 4697 1.376424 CAGTCAAGGCCATGAGCGT 60.376 57.895 11.76 0.00 45.17 5.07
3990 4709 0.752658 CATGAGCGTAGTGGATCCCA 59.247 55.000 9.90 0.00 0.00 4.37
4003 4722 0.323629 GATCCCAACCCTTGTCGACA 59.676 55.000 15.76 15.76 0.00 4.35
4005 4724 0.547075 TCCCAACCCTTGTCGACAAA 59.453 50.000 29.32 14.81 35.15 2.83
4014 4733 2.572290 CTTGTCGACAAAAGGGTTCCT 58.428 47.619 29.32 0.00 35.15 3.36
4015 4734 1.961793 TGTCGACAAAAGGGTTCCTG 58.038 50.000 17.62 0.00 32.13 3.86
4017 4736 1.871676 GTCGACAAAAGGGTTCCTGTC 59.128 52.381 11.55 0.00 32.13 3.51
4019 4738 2.143925 CGACAAAAGGGTTCCTGTCTC 58.856 52.381 7.15 0.00 32.13 3.36
4020 4739 2.505405 GACAAAAGGGTTCCTGTCTCC 58.495 52.381 0.00 0.00 32.13 3.71
4069 4803 1.886886 AAAATACAAGACCGCCACGT 58.113 45.000 0.00 0.00 0.00 4.49
4100 4834 3.780850 AGATGGAATAAAGTTCTCCCCGT 59.219 43.478 0.00 0.00 0.00 5.28
4105 4839 4.405036 GGAATAAAGTTCTCCCCGTCTAGT 59.595 45.833 0.00 0.00 0.00 2.57
4127 4861 1.958579 CCATCCCGGTGATACGTCTAA 59.041 52.381 0.00 0.00 30.56 2.10
4149 4883 2.813908 GTCGGTGGCGTGTGGATC 60.814 66.667 0.00 0.00 0.00 3.36
4229 4963 3.772932 ACGTTCGTGTGTCTTCAGTTTA 58.227 40.909 0.00 0.00 0.00 2.01
4245 4979 7.984050 TCTTCAGTTTAGATCCTTGCAATCTAG 59.016 37.037 0.00 0.00 37.12 2.43
4247 4981 6.156949 TCAGTTTAGATCCTTGCAATCTAGGT 59.843 38.462 0.00 0.00 37.12 3.08
4265 4999 3.162666 AGGTTACTCTTCATCGGTGACA 58.837 45.455 0.00 0.00 33.11 3.58
4314 5048 1.299541 CACTTGGCACGACAACTTCT 58.700 50.000 0.00 0.00 0.00 2.85
4320 5054 1.261619 GGCACGACAACTTCTCAACTG 59.738 52.381 0.00 0.00 0.00 3.16
4341 5075 6.120220 ACTGTCTACTACAAAAGTTTTGCCT 58.880 36.000 24.86 11.57 39.80 4.75
4349 5083 0.467290 AAAGTTTTGCCTGGCTCCGA 60.467 50.000 21.03 0.00 0.00 4.55
4367 5101 0.744771 GACGAGGGAAGGGCAATGAC 60.745 60.000 0.00 0.00 0.00 3.06
4378 5112 3.353029 CAATGACGGTGGTGCGCA 61.353 61.111 5.66 5.66 0.00 6.09
4405 5139 1.886542 TCGCTTCAGTGCTTCTAGTCA 59.113 47.619 0.00 0.00 0.00 3.41
4422 5156 4.920640 AGTCATCGTTAGGTGGACTATG 57.079 45.455 0.00 0.00 37.08 2.23
4423 5157 3.637229 AGTCATCGTTAGGTGGACTATGG 59.363 47.826 0.00 0.00 37.08 2.74
4542 5276 0.818445 GGGATCGAGCTCGTGACCTA 60.818 60.000 33.33 15.50 40.80 3.08
4547 5281 1.716826 CGAGCTCGTGACCTAGTCCC 61.717 65.000 27.79 0.00 34.11 4.46
4571 5305 4.323553 GACATATGGTCACTAGTGGTCC 57.676 50.000 22.48 22.40 46.19 4.46
4656 5415 6.712095 TCAGGATTATATTGCAGATTCACCAC 59.288 38.462 0.00 0.00 0.00 4.16
4727 5486 5.658634 AGACCACTCAATGCAGACTAATCTA 59.341 40.000 0.00 0.00 32.25 1.98
4801 5560 3.409026 AGCATCCTTTTGAAGACGACT 57.591 42.857 0.00 0.00 0.00 4.18
4806 5565 2.169769 TCCTTTTGAAGACGACTGTGGT 59.830 45.455 0.00 0.00 0.00 4.16
4822 5581 1.067776 GTGGTGACCAGGAAGTCTACG 60.068 57.143 3.58 0.00 37.66 3.51
4823 5582 1.254954 GGTGACCAGGAAGTCTACGT 58.745 55.000 0.00 0.00 37.66 3.57
4832 5591 2.826128 AGGAAGTCTACGTGCTTCATCA 59.174 45.455 21.90 0.00 41.93 3.07
4844 5603 4.619973 GTGCTTCATCAACAAATGACCAA 58.380 39.130 0.00 0.00 41.93 3.67
4892 5651 0.889186 AATCTTCGCCGCAAACCAGT 60.889 50.000 0.00 0.00 0.00 4.00
4899 5658 1.423845 CCGCAAACCAGTGATACGC 59.576 57.895 0.00 0.00 0.00 4.42
4921 5680 2.040178 CCCTACATCACACCTAGACCC 58.960 57.143 0.00 0.00 0.00 4.46
4923 5682 2.695666 CCTACATCACACCTAGACCCAG 59.304 54.545 0.00 0.00 0.00 4.45
4930 5689 1.049289 CACCTAGACCCAGCCCCTAC 61.049 65.000 0.00 0.00 0.00 3.18
4932 5691 1.049289 CCTAGACCCAGCCCCTACAC 61.049 65.000 0.00 0.00 0.00 2.90
4935 5694 2.933834 ACCCAGCCCCTACACCAC 60.934 66.667 0.00 0.00 0.00 4.16
4937 5696 4.096003 CCAGCCCCTACACCACCG 62.096 72.222 0.00 0.00 0.00 4.94
4989 5797 0.039074 CACCAGACCTCGCGATATCC 60.039 60.000 10.36 0.00 0.00 2.59
4997 5805 2.290641 ACCTCGCGATATCCTCAGATCT 60.291 50.000 10.36 0.00 33.67 2.75
5032 5840 1.614241 CCCCTTCTTCGATCCACCGT 61.614 60.000 0.00 0.00 0.00 4.83
5094 5902 0.904865 AGATCAGCGGGAAGACCACA 60.905 55.000 0.00 0.00 40.22 4.17
5095 5903 0.741221 GATCAGCGGGAAGACCACAC 60.741 60.000 0.00 0.00 40.22 3.82
5101 5909 2.457323 GGGAAGACCACACCACCCA 61.457 63.158 0.00 0.00 39.85 4.51
5102 5910 1.073199 GGAAGACCACACCACCCAG 59.927 63.158 0.00 0.00 35.97 4.45
5109 5917 1.371183 CACACCACCCAGATGTCGT 59.629 57.895 0.00 0.00 0.00 4.34
5136 5944 2.449967 TACACCGGCAAGGGAGAGGA 62.450 60.000 0.00 0.00 46.96 3.71
5137 5945 2.203938 ACCGGCAAGGGAGAGGAA 60.204 61.111 0.00 0.00 46.96 3.36
5155 5963 5.998363 AGAGGAAGGACGGCATATTTATTTC 59.002 40.000 0.00 0.00 0.00 2.17
5157 5965 6.365520 AGGAAGGACGGCATATTTATTTCTT 58.634 36.000 0.00 0.00 0.00 2.52
5158 5966 6.833933 AGGAAGGACGGCATATTTATTTCTTT 59.166 34.615 0.00 0.00 0.00 2.52
5162 5970 6.605594 AGGACGGCATATTTATTTCTTTGGAA 59.394 34.615 0.00 0.00 0.00 3.53
5166 5974 5.462068 GGCATATTTATTTCTTTGGAACGGC 59.538 40.000 0.00 0.00 0.00 5.68
5189 5997 4.003648 GTCAAAGTCCTCACCAAATCGAT 58.996 43.478 0.00 0.00 0.00 3.59
5194 6002 1.212688 TCCTCACCAAATCGATGCCAT 59.787 47.619 0.00 0.00 0.00 4.40
5239 6047 1.339438 ACACGCCTGATGCAGAGAAAT 60.339 47.619 0.00 0.00 41.33 2.17
5250 6058 2.439507 TGCAGAGAAATAGGATCCCCAC 59.560 50.000 8.55 0.00 33.88 4.61
5259 6067 2.844839 GATCCCCACCTCCTCCCG 60.845 72.222 0.00 0.00 0.00 5.14
5333 6141 6.719829 TCCTAATAGCACGAGGAATCTCATAA 59.280 38.462 0.00 0.00 39.95 1.90
5346 6154 5.532779 GGAATCTCATAAATCCAACAGGACC 59.467 44.000 0.00 0.00 33.38 4.46
5348 6156 7.420214 GGAATCTCATAAATCCAACAGGACCTA 60.420 40.741 0.00 0.00 33.38 3.08
5355 6163 5.456921 AATCCAACAGGACCTAACATCAT 57.543 39.130 0.00 0.00 33.38 2.45
5361 6169 5.860941 ACAGGACCTAACATCATACTCTG 57.139 43.478 0.00 0.00 0.00 3.35
5371 6179 7.554118 CCTAACATCATACTCTGTTGATTTGGT 59.446 37.037 0.00 0.00 36.34 3.67
5436 6247 8.939201 TTTGTTGATTTTGCAAGAGATTAACA 57.061 26.923 17.73 17.73 0.00 2.41
5437 6248 9.545105 TTTGTTGATTTTGCAAGAGATTAACAT 57.455 25.926 20.15 0.00 31.12 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.496336 GGTGGCTGGCAGGCTAGG 62.496 72.222 36.29 3.53 41.96 3.02
44 45 4.845580 CGGTGGCTGGCAGGCTAG 62.846 72.222 36.29 24.44 41.96 3.42
68 69 3.842925 TTCCCCGTTCTGGTGCTGC 62.843 63.158 0.00 0.00 35.15 5.25
69 70 1.966451 GTTCCCCGTTCTGGTGCTG 60.966 63.158 0.00 0.00 35.15 4.41
70 71 2.430367 GTTCCCCGTTCTGGTGCT 59.570 61.111 0.00 0.00 35.15 4.40
71 72 3.047877 CGTTCCCCGTTCTGGTGC 61.048 66.667 0.00 0.00 35.15 5.01
72 73 2.358247 CCGTTCCCCGTTCTGGTG 60.358 66.667 0.00 0.00 35.15 4.17
73 74 2.524887 TCCGTTCCCCGTTCTGGT 60.525 61.111 0.00 0.00 35.15 4.00
74 75 2.264794 CTCCGTTCCCCGTTCTGG 59.735 66.667 0.00 0.00 37.55 3.86
75 76 2.264794 CCTCCGTTCCCCGTTCTG 59.735 66.667 0.00 0.00 33.66 3.02
76 77 3.001406 CCCTCCGTTCCCCGTTCT 61.001 66.667 0.00 0.00 33.66 3.01
77 78 4.772687 GCCCTCCGTTCCCCGTTC 62.773 72.222 0.00 0.00 33.66 3.95
97 98 1.732308 GGGTCCTATCGTCCGTGAC 59.268 63.158 0.00 0.00 0.00 3.67
98 99 1.454479 GGGGTCCTATCGTCCGTGA 60.454 63.158 0.00 0.00 0.00 4.35
99 100 2.842256 CGGGGTCCTATCGTCCGTG 61.842 68.421 0.00 0.00 36.38 4.94
100 101 2.517875 CGGGGTCCTATCGTCCGT 60.518 66.667 0.00 0.00 36.38 4.69
101 102 3.974757 GCGGGGTCCTATCGTCCG 61.975 72.222 0.00 0.00 43.13 4.79
102 103 3.974757 CGCGGGGTCCTATCGTCC 61.975 72.222 0.00 0.00 0.00 4.79
103 104 4.642542 GCGCGGGGTCCTATCGTC 62.643 72.222 8.83 0.00 0.00 4.20
127 128 4.112341 CTGGTCCCGGACGTCGTC 62.112 72.222 17.16 17.16 37.11 4.20
130 131 4.736896 GTGCTGGTCCCGGACGTC 62.737 72.222 7.13 7.13 32.65 4.34
133 134 3.682292 GATGGTGCTGGTCCCGGAC 62.682 68.421 9.30 9.30 0.00 4.79
134 135 3.399181 GATGGTGCTGGTCCCGGA 61.399 66.667 0.73 0.00 0.00 5.14
135 136 4.838152 CGATGGTGCTGGTCCCGG 62.838 72.222 0.00 0.00 0.00 5.73
136 137 2.978452 GATCGATGGTGCTGGTCCCG 62.978 65.000 0.54 0.00 0.00 5.14
137 138 1.227674 GATCGATGGTGCTGGTCCC 60.228 63.158 0.54 0.00 0.00 4.46
138 139 0.249657 GAGATCGATGGTGCTGGTCC 60.250 60.000 0.54 0.00 0.00 4.46
139 140 0.461548 TGAGATCGATGGTGCTGGTC 59.538 55.000 0.54 0.00 0.00 4.02
140 141 0.463204 CTGAGATCGATGGTGCTGGT 59.537 55.000 0.54 0.00 0.00 4.00
141 142 0.879400 GCTGAGATCGATGGTGCTGG 60.879 60.000 0.54 0.00 0.00 4.85
142 143 0.179092 TGCTGAGATCGATGGTGCTG 60.179 55.000 0.54 0.00 0.00 4.41
143 144 0.104487 CTGCTGAGATCGATGGTGCT 59.896 55.000 0.54 0.00 0.00 4.40
144 145 0.879400 CCTGCTGAGATCGATGGTGC 60.879 60.000 0.54 2.39 0.00 5.01
145 146 0.249784 CCCTGCTGAGATCGATGGTG 60.250 60.000 0.54 0.00 0.00 4.17
146 147 1.406065 CCCCTGCTGAGATCGATGGT 61.406 60.000 0.54 0.00 0.00 3.55
147 148 1.370437 CCCCTGCTGAGATCGATGG 59.630 63.158 0.54 0.00 0.00 3.51
148 149 1.301558 GCCCCTGCTGAGATCGATG 60.302 63.158 0.54 0.00 33.53 3.84
149 150 2.515071 GGCCCCTGCTGAGATCGAT 61.515 63.158 0.00 0.00 37.74 3.59
150 151 3.157252 GGCCCCTGCTGAGATCGA 61.157 66.667 0.00 0.00 37.74 3.59
151 152 3.160047 AGGCCCCTGCTGAGATCG 61.160 66.667 0.00 0.00 37.74 3.69
152 153 2.509916 CAGGCCCCTGCTGAGATC 59.490 66.667 0.00 0.00 37.24 2.75
153 154 3.095163 CCAGGCCCCTGCTGAGAT 61.095 66.667 8.84 0.00 42.35 2.75
179 180 4.688966 GATCCCATCTCCGCCGCC 62.689 72.222 0.00 0.00 0.00 6.13
185 186 2.653702 CTCGGCGATCCCATCTCC 59.346 66.667 11.27 0.00 0.00 3.71
186 187 1.872197 CTCCTCGGCGATCCCATCTC 61.872 65.000 11.27 0.00 0.00 2.75
187 188 1.905843 CTCCTCGGCGATCCCATCT 60.906 63.158 11.27 0.00 0.00 2.90
188 189 2.653702 CTCCTCGGCGATCCCATC 59.346 66.667 11.27 0.00 0.00 3.51
189 190 3.620785 GCTCCTCGGCGATCCCAT 61.621 66.667 11.27 0.00 0.00 4.00
199 200 4.856607 GCTTCGTCCGGCTCCTCG 62.857 72.222 0.00 0.00 0.00 4.63
200 201 4.516195 GGCTTCGTCCGGCTCCTC 62.516 72.222 0.00 0.00 0.00 3.71
208 209 4.856607 CTCTCCGCGGCTTCGTCC 62.857 72.222 23.51 0.00 36.07 4.79
233 234 4.489771 GTCCACCATGGCCTCCCG 62.490 72.222 13.04 0.00 37.47 5.14
234 235 4.489771 CGTCCACCATGGCCTCCC 62.490 72.222 13.04 0.00 37.47 4.30
240 241 4.175337 ATCCGGCGTCCACCATGG 62.175 66.667 11.19 11.19 39.43 3.66
241 242 2.588877 GATCCGGCGTCCACCATG 60.589 66.667 6.01 0.00 0.00 3.66
242 243 3.861797 GGATCCGGCGTCCACCAT 61.862 66.667 17.79 0.00 35.76 3.55
516 517 4.546570 CCTCATTCGGTTTGAAGGAAAAC 58.453 43.478 0.00 0.00 45.83 2.43
517 518 3.005367 GCCTCATTCGGTTTGAAGGAAAA 59.995 43.478 0.00 0.00 45.83 2.29
518 519 2.556622 GCCTCATTCGGTTTGAAGGAAA 59.443 45.455 0.00 0.00 45.83 3.13
519 520 2.159382 GCCTCATTCGGTTTGAAGGAA 58.841 47.619 0.00 0.00 45.83 3.36
520 521 1.613255 GGCCTCATTCGGTTTGAAGGA 60.613 52.381 0.00 0.00 44.52 3.36
521 522 0.811281 GGCCTCATTCGGTTTGAAGG 59.189 55.000 0.00 0.00 40.65 3.46
522 523 1.826385 AGGCCTCATTCGGTTTGAAG 58.174 50.000 0.00 0.00 40.65 3.02
523 524 1.885887 CAAGGCCTCATTCGGTTTGAA 59.114 47.619 5.23 0.00 41.81 2.69
524 525 1.073125 TCAAGGCCTCATTCGGTTTGA 59.927 47.619 5.23 0.00 31.78 2.69
525 526 1.470098 CTCAAGGCCTCATTCGGTTTG 59.530 52.381 5.23 0.00 0.00 2.93
526 527 1.614317 CCTCAAGGCCTCATTCGGTTT 60.614 52.381 5.23 0.00 0.00 3.27
527 528 0.035056 CCTCAAGGCCTCATTCGGTT 60.035 55.000 5.23 0.00 0.00 4.44
528 529 1.201429 ACCTCAAGGCCTCATTCGGT 61.201 55.000 5.23 6.00 39.32 4.69
529 530 0.462759 GACCTCAAGGCCTCATTCGG 60.463 60.000 5.23 5.29 39.32 4.30
530 531 0.807667 CGACCTCAAGGCCTCATTCG 60.808 60.000 5.23 6.77 39.32 3.34
531 532 0.462759 CCGACCTCAAGGCCTCATTC 60.463 60.000 5.23 0.00 39.32 2.67
532 533 0.909610 TCCGACCTCAAGGCCTCATT 60.910 55.000 5.23 0.00 39.32 2.57
533 534 0.692419 ATCCGACCTCAAGGCCTCAT 60.692 55.000 5.23 0.00 39.32 2.90
534 535 0.032515 TATCCGACCTCAAGGCCTCA 60.033 55.000 5.23 0.00 39.32 3.86
535 536 0.389757 GTATCCGACCTCAAGGCCTC 59.610 60.000 5.23 0.00 39.32 4.70
536 537 0.325296 TGTATCCGACCTCAAGGCCT 60.325 55.000 0.00 0.00 39.32 5.19
537 538 0.759346 ATGTATCCGACCTCAAGGCC 59.241 55.000 0.00 0.00 39.32 5.19
538 539 1.871080 CATGTATCCGACCTCAAGGC 58.129 55.000 0.00 0.00 39.32 4.35
539 540 1.869754 CGCATGTATCCGACCTCAAGG 60.870 57.143 0.00 0.00 42.17 3.61
540 541 1.491670 CGCATGTATCCGACCTCAAG 58.508 55.000 0.00 0.00 0.00 3.02
541 542 0.104120 CCGCATGTATCCGACCTCAA 59.896 55.000 0.00 0.00 0.00 3.02
542 543 1.739667 CCGCATGTATCCGACCTCA 59.260 57.895 0.00 0.00 0.00 3.86
543 544 1.006102 CCCGCATGTATCCGACCTC 60.006 63.158 0.00 0.00 0.00 3.85
544 545 0.468585 TACCCGCATGTATCCGACCT 60.469 55.000 0.00 0.00 0.00 3.85
545 546 0.038526 CTACCCGCATGTATCCGACC 60.039 60.000 0.00 0.00 0.00 4.79
546 547 0.666577 GCTACCCGCATGTATCCGAC 60.667 60.000 0.00 0.00 38.92 4.79
547 548 1.663739 GCTACCCGCATGTATCCGA 59.336 57.895 0.00 0.00 38.92 4.55
548 549 1.733041 CGCTACCCGCATGTATCCG 60.733 63.158 0.00 0.00 39.08 4.18
549 550 0.249741 AACGCTACCCGCATGTATCC 60.250 55.000 0.00 0.00 41.76 2.59
550 551 2.288030 ACTAACGCTACCCGCATGTATC 60.288 50.000 0.00 0.00 41.76 2.24
551 552 1.684983 ACTAACGCTACCCGCATGTAT 59.315 47.619 0.00 0.00 41.76 2.29
552 553 1.105457 ACTAACGCTACCCGCATGTA 58.895 50.000 0.00 0.00 41.76 2.29
553 554 1.105457 TACTAACGCTACCCGCATGT 58.895 50.000 0.00 0.00 41.76 3.21
554 555 2.058798 CATACTAACGCTACCCGCATG 58.941 52.381 0.00 0.00 41.76 4.06
555 556 1.958579 TCATACTAACGCTACCCGCAT 59.041 47.619 0.00 0.00 41.76 4.73
556 557 1.066002 GTCATACTAACGCTACCCGCA 59.934 52.381 0.00 0.00 41.76 5.69
557 558 1.601412 GGTCATACTAACGCTACCCGC 60.601 57.143 0.00 0.00 41.76 6.13
558 559 1.334419 CGGTCATACTAACGCTACCCG 60.334 57.143 0.00 0.00 44.21 5.28
559 560 1.949525 TCGGTCATACTAACGCTACCC 59.050 52.381 0.00 0.00 0.00 3.69
560 561 2.615912 AGTCGGTCATACTAACGCTACC 59.384 50.000 0.00 0.00 0.00 3.18
561 562 3.959573 AGTCGGTCATACTAACGCTAC 57.040 47.619 0.00 0.00 0.00 3.58
562 563 3.001634 CGAAGTCGGTCATACTAACGCTA 59.998 47.826 0.00 0.00 35.37 4.26
563 564 2.223203 CGAAGTCGGTCATACTAACGCT 60.223 50.000 0.00 0.00 35.37 5.07
564 565 2.107178 CGAAGTCGGTCATACTAACGC 58.893 52.381 0.00 0.00 35.37 4.84
565 566 3.096461 CACGAAGTCGGTCATACTAACG 58.904 50.000 5.60 0.00 41.61 3.18
566 567 4.088823 ACACGAAGTCGGTCATACTAAC 57.911 45.455 5.60 0.00 41.61 2.34
567 568 4.669965 CGAACACGAAGTCGGTCATACTAA 60.670 45.833 5.60 0.00 41.61 2.24
568 569 3.181517 CGAACACGAAGTCGGTCATACTA 60.182 47.826 5.60 0.00 41.61 1.82
569 570 2.413765 CGAACACGAAGTCGGTCATACT 60.414 50.000 5.60 0.00 41.61 2.12
570 571 1.909532 CGAACACGAAGTCGGTCATAC 59.090 52.381 5.60 0.00 41.61 2.39
571 572 1.730121 GCGAACACGAAGTCGGTCATA 60.730 52.381 5.60 0.00 41.61 2.15
572 573 1.007336 GCGAACACGAAGTCGGTCAT 61.007 55.000 5.60 0.00 41.61 3.06
573 574 1.659335 GCGAACACGAAGTCGGTCA 60.659 57.895 5.60 0.00 41.61 4.02
574 575 2.704193 CGCGAACACGAAGTCGGTC 61.704 63.158 0.00 0.00 41.61 4.79
575 576 2.728383 CGCGAACACGAAGTCGGT 60.728 61.111 0.00 0.00 41.61 4.69
576 577 3.467119 CCGCGAACACGAAGTCGG 61.467 66.667 8.23 0.00 41.61 4.79
577 578 2.427905 TCCGCGAACACGAAGTCG 60.428 61.111 8.23 0.00 41.61 4.18
578 579 1.606350 CTGTCCGCGAACACGAAGTC 61.606 60.000 8.23 0.00 41.61 3.01
580 581 2.372690 CCTGTCCGCGAACACGAAG 61.373 63.158 8.23 0.00 34.06 3.79
581 582 2.355363 CCTGTCCGCGAACACGAA 60.355 61.111 8.23 0.00 34.06 3.85
582 583 3.141522 AACCTGTCCGCGAACACGA 62.142 57.895 8.23 0.00 34.06 4.35
583 584 2.660552 AACCTGTCCGCGAACACG 60.661 61.111 8.23 0.00 0.00 4.49
584 585 2.935955 CAACCTGTCCGCGAACAC 59.064 61.111 8.23 1.05 0.00 3.32
585 586 2.970324 GCAACCTGTCCGCGAACA 60.970 61.111 8.23 0.98 0.00 3.18
591 592 3.649277 CTCTCCCGCAACCTGTCCG 62.649 68.421 0.00 0.00 0.00 4.79
592 593 2.113243 AACTCTCCCGCAACCTGTCC 62.113 60.000 0.00 0.00 0.00 4.02
593 594 0.250338 AAACTCTCCCGCAACCTGTC 60.250 55.000 0.00 0.00 0.00 3.51
594 595 0.535102 CAAACTCTCCCGCAACCTGT 60.535 55.000 0.00 0.00 0.00 4.00
595 596 1.856265 GCAAACTCTCCCGCAACCTG 61.856 60.000 0.00 0.00 0.00 4.00
596 597 1.600916 GCAAACTCTCCCGCAACCT 60.601 57.895 0.00 0.00 0.00 3.50
597 598 2.626780 GGCAAACTCTCCCGCAACC 61.627 63.158 0.00 0.00 0.00 3.77
598 599 0.321298 TAGGCAAACTCTCCCGCAAC 60.321 55.000 0.00 0.00 0.00 4.17
599 600 0.618458 ATAGGCAAACTCTCCCGCAA 59.382 50.000 0.00 0.00 0.00 4.85
600 601 0.618458 AATAGGCAAACTCTCCCGCA 59.382 50.000 0.00 0.00 0.00 5.69
601 602 1.300481 GAATAGGCAAACTCTCCCGC 58.700 55.000 0.00 0.00 0.00 6.13
602 603 2.691409 TGAATAGGCAAACTCTCCCG 57.309 50.000 0.00 0.00 0.00 5.14
603 604 3.879892 GTGATGAATAGGCAAACTCTCCC 59.120 47.826 0.00 0.00 0.00 4.30
604 605 4.517285 TGTGATGAATAGGCAAACTCTCC 58.483 43.478 0.00 0.00 0.00 3.71
605 606 6.541641 AGATTGTGATGAATAGGCAAACTCTC 59.458 38.462 0.00 0.00 0.00 3.20
606 607 6.421485 AGATTGTGATGAATAGGCAAACTCT 58.579 36.000 0.00 0.00 0.00 3.24
607 608 6.690194 AGATTGTGATGAATAGGCAAACTC 57.310 37.500 0.00 0.00 0.00 3.01
608 609 7.341805 AGTAGATTGTGATGAATAGGCAAACT 58.658 34.615 0.00 0.00 0.00 2.66
609 610 7.280876 TGAGTAGATTGTGATGAATAGGCAAAC 59.719 37.037 0.00 0.00 0.00 2.93
610 611 7.337938 TGAGTAGATTGTGATGAATAGGCAAA 58.662 34.615 0.00 0.00 0.00 3.68
611 612 6.888105 TGAGTAGATTGTGATGAATAGGCAA 58.112 36.000 0.00 0.00 0.00 4.52
612 613 6.484364 TGAGTAGATTGTGATGAATAGGCA 57.516 37.500 0.00 0.00 0.00 4.75
613 614 7.117523 GTGATGAGTAGATTGTGATGAATAGGC 59.882 40.741 0.00 0.00 0.00 3.93
614 615 8.366401 AGTGATGAGTAGATTGTGATGAATAGG 58.634 37.037 0.00 0.00 0.00 2.57
615 616 9.409312 GAGTGATGAGTAGATTGTGATGAATAG 57.591 37.037 0.00 0.00 0.00 1.73
616 617 8.078596 CGAGTGATGAGTAGATTGTGATGAATA 58.921 37.037 0.00 0.00 0.00 1.75
617 618 6.922407 CGAGTGATGAGTAGATTGTGATGAAT 59.078 38.462 0.00 0.00 0.00 2.57
618 619 6.127619 ACGAGTGATGAGTAGATTGTGATGAA 60.128 38.462 0.00 0.00 0.00 2.57
619 620 5.358160 ACGAGTGATGAGTAGATTGTGATGA 59.642 40.000 0.00 0.00 0.00 2.92
620 621 5.586339 ACGAGTGATGAGTAGATTGTGATG 58.414 41.667 0.00 0.00 0.00 3.07
621 622 5.843673 ACGAGTGATGAGTAGATTGTGAT 57.156 39.130 0.00 0.00 0.00 3.06
622 623 5.416013 AGAACGAGTGATGAGTAGATTGTGA 59.584 40.000 0.00 0.00 0.00 3.58
623 624 5.645624 AGAACGAGTGATGAGTAGATTGTG 58.354 41.667 0.00 0.00 0.00 3.33
624 625 5.416013 TGAGAACGAGTGATGAGTAGATTGT 59.584 40.000 0.00 0.00 0.00 2.71
625 626 5.741510 GTGAGAACGAGTGATGAGTAGATTG 59.258 44.000 0.00 0.00 0.00 2.67
626 627 5.447954 CGTGAGAACGAGTGATGAGTAGATT 60.448 44.000 0.00 0.00 34.64 2.40
627 628 4.034626 CGTGAGAACGAGTGATGAGTAGAT 59.965 45.833 0.00 0.00 34.64 1.98
628 629 3.371285 CGTGAGAACGAGTGATGAGTAGA 59.629 47.826 0.00 0.00 34.64 2.59
629 630 3.486043 CCGTGAGAACGAGTGATGAGTAG 60.486 52.174 0.00 0.00 34.64 2.57
630 631 2.418976 CCGTGAGAACGAGTGATGAGTA 59.581 50.000 0.00 0.00 34.64 2.59
631 632 1.200252 CCGTGAGAACGAGTGATGAGT 59.800 52.381 0.00 0.00 34.64 3.41
632 633 1.901538 CCGTGAGAACGAGTGATGAG 58.098 55.000 0.00 0.00 34.64 2.90
633 634 0.109272 GCCGTGAGAACGAGTGATGA 60.109 55.000 0.00 0.00 34.64 2.92
634 635 0.388520 TGCCGTGAGAACGAGTGATG 60.389 55.000 0.00 0.00 34.64 3.07
635 636 0.388649 GTGCCGTGAGAACGAGTGAT 60.389 55.000 0.00 0.00 34.64 3.06
636 637 1.007734 GTGCCGTGAGAACGAGTGA 60.008 57.895 0.00 0.00 34.64 3.41
637 638 2.365068 CGTGCCGTGAGAACGAGTG 61.365 63.158 0.00 0.00 41.46 3.51
638 639 2.050351 CGTGCCGTGAGAACGAGT 60.050 61.111 0.00 0.00 41.46 4.18
639 640 2.254350 TCGTGCCGTGAGAACGAG 59.746 61.111 0.00 0.00 42.30 4.18
640 641 2.254350 CTCGTGCCGTGAGAACGA 59.746 61.111 0.00 0.00 43.98 3.85
641 642 2.805353 CCTCGTGCCGTGAGAACG 60.805 66.667 0.00 0.00 40.69 3.95
642 643 2.430382 TTCCCTCGTGCCGTGAGAAC 62.430 60.000 0.00 0.00 35.43 3.01
643 644 1.750341 TTTCCCTCGTGCCGTGAGAA 61.750 55.000 0.00 0.00 35.43 2.87
644 645 2.204461 TTTCCCTCGTGCCGTGAGA 61.204 57.895 0.00 0.00 35.43 3.27
645 646 2.027625 GTTTCCCTCGTGCCGTGAG 61.028 63.158 0.00 0.00 0.00 3.51
646 647 2.029964 GTTTCCCTCGTGCCGTGA 59.970 61.111 0.00 0.00 0.00 4.35
647 648 1.566018 GAAGTTTCCCTCGTGCCGTG 61.566 60.000 0.00 0.00 0.00 4.94
648 649 1.301479 GAAGTTTCCCTCGTGCCGT 60.301 57.895 0.00 0.00 0.00 5.68
709 715 0.881159 TGTAAAACCGTGGGAGCACG 60.881 55.000 0.00 0.00 46.92 5.34
726 732 7.861629 TGGAATCCTGTATCTACAAATTCTGT 58.138 34.615 16.64 0.22 42.47 3.41
732 738 7.110155 GGAGTTTGGAATCCTGTATCTACAAA 58.890 38.462 0.00 0.00 35.50 2.83
736 742 5.205821 TCGGAGTTTGGAATCCTGTATCTA 58.794 41.667 0.00 0.00 33.12 1.98
787 793 1.065854 CCTCGGCCTTCTGTCAATTCT 60.066 52.381 0.00 0.00 0.00 2.40
884 903 0.964358 CGGAAGGGGACACGTAGACT 60.964 60.000 0.00 0.00 0.00 3.24
954 974 2.255881 TGAGCGAGTGACGTCGGAA 61.256 57.895 11.62 0.00 44.60 4.30
976 996 4.499758 GCGTGTAAATGTAGTAGAGTGAGC 59.500 45.833 0.00 0.00 0.00 4.26
984 1004 4.865925 GGTGTCATGCGTGTAAATGTAGTA 59.134 41.667 5.68 0.00 0.00 1.82
992 1012 1.374885 CGGGGTGTCATGCGTGTAA 60.375 57.895 5.68 0.00 0.00 2.41
1159 1179 1.078567 GGAGCAGAGAGGGCAACAG 60.079 63.158 0.00 0.00 39.74 3.16
1161 1181 2.270527 GGGAGCAGAGAGGGCAAC 59.729 66.667 0.00 0.00 0.00 4.17
1989 2039 0.874175 CGACACAGTCAAGAACGGCA 60.874 55.000 0.00 0.00 32.09 5.69
1998 2048 1.299850 CAACGAGGCGACACAGTCA 60.300 57.895 0.00 0.00 32.09 3.41
2013 2063 1.200948 GTGAAGATCTTGGGCTGCAAC 59.799 52.381 14.00 0.00 0.00 4.17
2112 2162 2.329379 GCGTCAAGAGAATCGAACACT 58.671 47.619 0.00 0.00 42.67 3.55
2121 2171 2.126463 CTCGCCGCGTCAAGAGAA 60.126 61.111 13.39 0.00 32.84 2.87
2182 2232 1.371022 CGATGTCGCAGATCTCCCG 60.371 63.158 0.00 0.00 40.67 5.14
2589 2639 4.404098 ATGGAACCACCCCGCGAC 62.404 66.667 8.23 0.00 38.00 5.19
2623 2673 6.959871 CGAGAGTTTCATGTCATTGAGATTTG 59.040 38.462 0.00 0.00 0.00 2.32
2661 2711 3.795639 CAGTGTCAGCAAGAGATACGATG 59.204 47.826 0.00 0.00 33.07 3.84
2665 2715 2.275318 GGCAGTGTCAGCAAGAGATAC 58.725 52.381 0.00 0.00 0.00 2.24
2706 2757 2.490903 GAGATGCCAAGTGTTGCAGAAT 59.509 45.455 0.00 0.00 41.46 2.40
2788 2842 1.279749 CCCCTCCCACCTAACCTTCC 61.280 65.000 0.00 0.00 0.00 3.46
2891 2948 2.457366 AGATTCGTTGAGCCTCGTTT 57.543 45.000 0.00 0.00 0.00 3.60
2898 2955 3.067721 AGTACGCTAGATTCGTTGAGC 57.932 47.619 0.00 0.00 40.89 4.26
2922 2979 9.956720 TTCTGTTTCACAAACTAGTAGTAGTAC 57.043 33.333 10.68 4.46 38.66 2.73
2924 2981 8.142551 CCTTCTGTTTCACAAACTAGTAGTAGT 58.857 37.037 2.50 4.29 41.61 2.73
2925 2982 8.142551 ACCTTCTGTTTCACAAACTAGTAGTAG 58.857 37.037 2.50 2.87 41.90 2.57
2978 3037 4.506758 TCAGCGATTCATCTTGATTCACA 58.493 39.130 0.00 0.00 29.77 3.58
3007 3066 1.335872 GGGGAATTGTGCAGTGTTTCG 60.336 52.381 0.00 0.00 0.00 3.46
3076 3135 1.359459 GGTCATCGTCGGTTTGGCTC 61.359 60.000 0.00 0.00 0.00 4.70
3088 3147 1.807165 CAGTGAGGCACGGTCATCG 60.807 63.158 0.00 0.00 45.88 3.84
3089 3148 2.103042 GCAGTGAGGCACGGTCATC 61.103 63.158 0.00 0.00 39.64 2.92
3090 3149 1.257750 TAGCAGTGAGGCACGGTCAT 61.258 55.000 0.00 0.00 39.64 3.06
3091 3150 1.906333 TAGCAGTGAGGCACGGTCA 60.906 57.895 0.00 0.00 39.64 4.02
3092 3151 1.446272 GTAGCAGTGAGGCACGGTC 60.446 63.158 0.00 0.00 39.64 4.79
3093 3152 1.908793 AGTAGCAGTGAGGCACGGT 60.909 57.895 0.00 0.00 39.64 4.83
3094 3153 1.446792 CAGTAGCAGTGAGGCACGG 60.447 63.158 0.00 0.00 39.64 4.94
3095 3154 0.526211 TACAGTAGCAGTGAGGCACG 59.474 55.000 0.00 0.00 39.64 5.34
3096 3155 1.546476 AGTACAGTAGCAGTGAGGCAC 59.454 52.381 0.00 0.00 35.83 5.01
3097 3156 1.546029 CAGTACAGTAGCAGTGAGGCA 59.454 52.381 0.00 0.00 35.83 4.75
3098 3157 1.546476 ACAGTACAGTAGCAGTGAGGC 59.454 52.381 0.00 0.00 0.00 4.70
3099 3158 3.579709 CAACAGTACAGTAGCAGTGAGG 58.420 50.000 0.00 0.00 0.00 3.86
3100 3159 3.005897 ACCAACAGTACAGTAGCAGTGAG 59.994 47.826 0.00 0.00 0.00 3.51
3104 3163 2.069273 GCACCAACAGTACAGTAGCAG 58.931 52.381 0.00 0.00 0.00 4.24
3106 3165 1.068474 CGCACCAACAGTACAGTAGC 58.932 55.000 0.00 0.00 0.00 3.58
3472 3537 3.196901 ACTGGGTTTTTCCACAAAGGTTC 59.803 43.478 0.00 0.00 39.02 3.62
3473 3538 3.178046 ACTGGGTTTTTCCACAAAGGTT 58.822 40.909 0.00 0.00 39.02 3.50
3474 3539 2.827755 ACTGGGTTTTTCCACAAAGGT 58.172 42.857 0.00 0.00 39.02 3.50
3475 3540 3.243737 GCTACTGGGTTTTTCCACAAAGG 60.244 47.826 0.00 0.00 38.11 3.11
3476 3541 3.636764 AGCTACTGGGTTTTTCCACAAAG 59.363 43.478 0.00 0.00 38.11 2.77
3477 3542 3.637769 AGCTACTGGGTTTTTCCACAAA 58.362 40.909 0.00 0.00 38.11 2.83
3478 3543 3.306472 AGCTACTGGGTTTTTCCACAA 57.694 42.857 0.00 0.00 38.11 3.33
3525 3592 1.004918 CGACCTTCCGTTTCAGCCT 60.005 57.895 0.00 0.00 0.00 4.58
3564 3631 3.564264 AGCCTTACCAGCTACTAGTACC 58.436 50.000 0.00 0.00 39.29 3.34
3863 3975 2.632136 TTTGACGACGTTCACCGGCT 62.632 55.000 0.00 0.00 44.70 5.52
3871 3983 0.459934 TCGGTGGTTTTGACGACGTT 60.460 50.000 0.13 0.00 0.00 3.99
3872 3984 0.249573 ATCGGTGGTTTTGACGACGT 60.250 50.000 0.00 0.00 38.24 4.34
3881 3993 0.840722 AGAGGTCCCATCGGTGGTTT 60.841 55.000 15.03 0.00 44.48 3.27
3979 4697 1.913419 GACAAGGGTTGGGATCCACTA 59.087 52.381 15.23 0.00 30.78 2.74
4050 4782 1.802365 GACGTGGCGGTCTTGTATTTT 59.198 47.619 0.00 0.00 34.09 1.82
4066 4800 8.012957 ACTTTATTCCATCTTCATAGAGACGT 57.987 34.615 0.00 0.00 32.92 4.34
4067 4801 8.879342 AACTTTATTCCATCTTCATAGAGACG 57.121 34.615 0.00 0.00 32.92 4.18
4100 4834 0.561184 ATCACCGGGATGGGACTAGA 59.439 55.000 6.32 0.00 44.64 2.43
4105 4839 1.075822 ACGTATCACCGGGATGGGA 60.076 57.895 6.32 0.00 44.64 4.37
4127 4861 3.986006 ACACGCCACCGACGATGT 61.986 61.111 0.00 0.00 38.29 3.06
4149 4883 2.609459 GACAAATCCGTCATAGGCACAG 59.391 50.000 0.00 0.00 35.88 3.66
4229 4963 5.902431 AGAGTAACCTAGATTGCAAGGATCT 59.098 40.000 9.19 7.66 37.59 2.75
4245 4979 3.056749 ACTGTCACCGATGAAGAGTAACC 60.057 47.826 0.00 0.00 36.31 2.85
4247 4981 4.038763 ACAACTGTCACCGATGAAGAGTAA 59.961 41.667 0.00 0.00 36.31 2.24
4265 4999 2.287547 CCTGCGCAACATAACAACAACT 60.288 45.455 13.05 0.00 0.00 3.16
4314 5048 7.414762 GGCAAAACTTTTGTAGTAGACAGTTGA 60.415 37.037 14.36 0.00 39.88 3.18
4320 5054 5.758924 CCAGGCAAAACTTTTGTAGTAGAC 58.241 41.667 14.36 0.00 35.54 2.59
4341 5075 3.068691 CTTCCCTCGTCGGAGCCA 61.069 66.667 0.00 0.00 39.06 4.75
4349 5083 1.299976 GTCATTGCCCTTCCCTCGT 59.700 57.895 0.00 0.00 0.00 4.18
4378 5112 0.607489 AGCACTGAAGCGAGCCAAAT 60.607 50.000 0.00 0.00 40.15 2.32
4405 5139 2.090943 TCCCCATAGTCCACCTAACGAT 60.091 50.000 0.00 0.00 0.00 3.73
4490 5224 7.012943 GGTTTTCTTTTTCTTGAAAAACACCG 58.987 34.615 14.84 7.76 44.57 4.94
4493 5227 7.041030 GGTGGGTTTTCTTTTTCTTGAAAAACA 60.041 33.333 14.84 8.62 46.03 2.83
4494 5228 7.302524 GGTGGGTTTTCTTTTTCTTGAAAAAC 58.697 34.615 14.84 7.46 44.50 2.43
4571 5305 2.988010 TGCTGCCAGTTATACCTCAG 57.012 50.000 0.00 0.00 0.00 3.35
4621 5355 9.118300 CTGCAATATAATCCTGAAGTCTTTTCT 57.882 33.333 0.00 0.00 0.00 2.52
4622 5356 9.113838 TCTGCAATATAATCCTGAAGTCTTTTC 57.886 33.333 0.00 0.00 0.00 2.29
4630 5389 7.229306 GTGGTGAATCTGCAATATAATCCTGAA 59.771 37.037 0.00 0.00 0.00 3.02
4656 5415 3.329814 ACTTTTGGGGTCCCTTGTACTAG 59.670 47.826 8.15 0.00 36.94 2.57
4696 5455 2.637382 TGCATTGAGTGGTCTAAGGACA 59.363 45.455 0.00 0.00 43.77 4.02
4702 5461 5.658634 AGATTAGTCTGCATTGAGTGGTCTA 59.341 40.000 0.00 0.00 32.13 2.59
4727 5486 0.955919 GCCTACAACTCGCTTTGGCT 60.956 55.000 0.00 0.00 36.32 4.75
4801 5560 1.968493 GTAGACTTCCTGGTCACCACA 59.032 52.381 0.00 0.00 38.57 4.17
4806 5565 0.601558 GCACGTAGACTTCCTGGTCA 59.398 55.000 0.00 0.00 38.57 4.02
4822 5581 4.241590 TGGTCATTTGTTGATGAAGCAC 57.758 40.909 0.00 0.00 37.75 4.40
4823 5582 4.099113 TGTTGGTCATTTGTTGATGAAGCA 59.901 37.500 0.00 0.00 37.75 3.91
4832 5591 2.370349 TCGGTGTGTTGGTCATTTGTT 58.630 42.857 0.00 0.00 0.00 2.83
4844 5603 0.034059 CAGCCTTCTCTTCGGTGTGT 59.966 55.000 0.00 0.00 0.00 3.72
4892 5651 1.045407 GTGATGTAGGGGGCGTATCA 58.955 55.000 0.00 0.00 0.00 2.15
4899 5658 2.040178 GTCTAGGTGTGATGTAGGGGG 58.960 57.143 0.00 0.00 0.00 5.40
4921 5680 2.367202 ATCGGTGGTGTAGGGGCTG 61.367 63.158 0.00 0.00 0.00 4.85
4923 5682 2.189521 CATCGGTGGTGTAGGGGC 59.810 66.667 0.00 0.00 0.00 5.80
4930 5689 2.187946 GGCTCTCCATCGGTGGTG 59.812 66.667 15.92 13.11 46.16 4.17
4955 5763 2.217038 GGTGTCCTCTGGCTGGTCA 61.217 63.158 0.00 0.00 0.00 4.02
5015 5823 1.359848 CAACGGTGGATCGAAGAAGG 58.640 55.000 0.00 0.00 43.58 3.46
5017 5825 0.672401 GGCAACGGTGGATCGAAGAA 60.672 55.000 0.90 0.00 43.58 2.52
5018 5826 1.079405 GGCAACGGTGGATCGAAGA 60.079 57.895 0.90 0.00 45.75 2.87
5032 5840 4.323477 CTTCCCCGTCGGTGGCAA 62.323 66.667 11.06 6.93 0.00 4.52
5094 5902 0.034896 GTTGACGACATCTGGGTGGT 59.965 55.000 0.00 0.00 32.10 4.16
5095 5903 1.014044 CGTTGACGACATCTGGGTGG 61.014 60.000 0.00 0.00 43.02 4.61
5136 5944 6.605594 TCCAAAGAAATAAATATGCCGTCCTT 59.394 34.615 0.00 0.00 0.00 3.36
5137 5945 6.126409 TCCAAAGAAATAAATATGCCGTCCT 58.874 36.000 0.00 0.00 0.00 3.85
5155 5963 3.454941 CTTTGACGCCGTTCCAAAG 57.545 52.632 14.43 14.43 40.20 2.77
5157 5965 1.161563 GGACTTTGACGCCGTTCCAA 61.162 55.000 0.18 0.00 0.00 3.53
5158 5966 1.595929 GGACTTTGACGCCGTTCCA 60.596 57.895 0.18 0.00 0.00 3.53
5162 5970 1.300697 GTGAGGACTTTGACGCCGT 60.301 57.895 0.00 0.00 0.00 5.68
5166 5974 2.157668 CGATTTGGTGAGGACTTTGACG 59.842 50.000 0.00 0.00 0.00 4.35
5194 6002 0.614812 GGGTAGGTTTTAGTGGCCGA 59.385 55.000 0.00 0.00 0.00 5.54
5197 6005 5.364735 TGTAGATAGGGTAGGTTTTAGTGGC 59.635 44.000 0.00 0.00 0.00 5.01
5239 6047 1.675936 GGGAGGAGGTGGGGATCCTA 61.676 65.000 12.58 0.00 35.20 2.94
5300 6108 5.542635 TCCTCGTGCTATTAGGACCATTATT 59.457 40.000 9.45 0.00 34.46 1.40
5312 6120 6.876257 GGATTTATGAGATTCCTCGTGCTATT 59.124 38.462 0.00 0.00 42.33 1.73
5333 6141 4.927267 TGATGTTAGGTCCTGTTGGATT 57.073 40.909 0.00 0.00 45.29 3.01
5346 6154 8.498054 ACCAAATCAACAGAGTATGATGTTAG 57.502 34.615 0.00 0.00 37.54 2.34
5348 6156 8.862325 TTACCAAATCAACAGAGTATGATGTT 57.138 30.769 0.00 0.00 40.18 2.71
5355 6163 9.871238 GATTAGTCTTACCAAATCAACAGAGTA 57.129 33.333 0.00 0.00 0.00 2.59
5401 6212 6.815089 TGCAAAATCAACAAAGTAGGATGTT 58.185 32.000 0.00 0.00 40.24 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.