Multiple sequence alignment - TraesCS3D01G219900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G219900 | chr3D | 100.000 | 3123 | 0 | 0 | 3048 | 6170 | 299908800 | 299911922 | 0.000000e+00 | 5768.0 |
1 | TraesCS3D01G219900 | chr3D | 100.000 | 2805 | 0 | 0 | 1 | 2805 | 299905753 | 299908557 | 0.000000e+00 | 5180.0 |
2 | TraesCS3D01G219900 | chr3D | 95.880 | 631 | 25 | 1 | 1 | 631 | 246893657 | 246893028 | 0.000000e+00 | 1020.0 |
3 | TraesCS3D01G219900 | chr3D | 95.873 | 630 | 25 | 1 | 2 | 631 | 558000923 | 558000295 | 0.000000e+00 | 1018.0 |
4 | TraesCS3D01G219900 | chr3A | 91.558 | 1682 | 68 | 24 | 4522 | 6170 | 435804271 | 435802631 | 0.000000e+00 | 2252.0 |
5 | TraesCS3D01G219900 | chr3A | 97.508 | 1284 | 31 | 1 | 3127 | 4410 | 435806638 | 435805356 | 0.000000e+00 | 2193.0 |
6 | TraesCS3D01G219900 | chr3A | 93.005 | 1501 | 55 | 13 | 882 | 2352 | 435808923 | 435807443 | 0.000000e+00 | 2145.0 |
7 | TraesCS3D01G219900 | chr3A | 88.163 | 811 | 53 | 10 | 3899 | 4688 | 575786367 | 575787155 | 0.000000e+00 | 926.0 |
8 | TraesCS3D01G219900 | chr3A | 93.111 | 450 | 25 | 2 | 3161 | 3605 | 511209246 | 511208798 | 0.000000e+00 | 654.0 |
9 | TraesCS3D01G219900 | chr3A | 91.646 | 395 | 20 | 6 | 2413 | 2805 | 435807435 | 435807052 | 9.100000e-148 | 534.0 |
10 | TraesCS3D01G219900 | chr3A | 94.203 | 69 | 4 | 0 | 740 | 808 | 435809116 | 435809048 | 8.460000e-19 | 106.0 |
11 | TraesCS3D01G219900 | chr3A | 95.312 | 64 | 3 | 0 | 4409 | 4472 | 435805082 | 435805019 | 1.090000e-17 | 102.0 |
12 | TraesCS3D01G219900 | chr3A | 97.059 | 34 | 1 | 0 | 852 | 885 | 435808980 | 435808947 | 2.400000e-04 | 58.4 |
13 | TraesCS3D01G219900 | chr3B | 94.126 | 1498 | 50 | 10 | 882 | 2345 | 421240460 | 421238967 | 0.000000e+00 | 2244.0 |
14 | TraesCS3D01G219900 | chr3B | 97.990 | 1244 | 18 | 4 | 3180 | 4422 | 421237777 | 421236540 | 0.000000e+00 | 2152.0 |
15 | TraesCS3D01G219900 | chr3B | 95.856 | 724 | 21 | 6 | 4663 | 5383 | 421236542 | 421235825 | 0.000000e+00 | 1162.0 |
16 | TraesCS3D01G219900 | chr3B | 93.647 | 425 | 16 | 3 | 3633 | 4057 | 393256300 | 393256713 | 5.250000e-175 | 625.0 |
17 | TraesCS3D01G219900 | chr3B | 93.176 | 425 | 19 | 2 | 3633 | 4057 | 430924349 | 430923935 | 3.160000e-172 | 616.0 |
18 | TraesCS3D01G219900 | chr3B | 92.627 | 434 | 19 | 5 | 3633 | 4065 | 51768893 | 51769314 | 4.090000e-171 | 612.0 |
19 | TraesCS3D01G219900 | chr3B | 91.879 | 431 | 22 | 4 | 5571 | 6001 | 421229420 | 421229003 | 1.920000e-164 | 590.0 |
20 | TraesCS3D01G219900 | chr3B | 86.189 | 391 | 17 | 6 | 2435 | 2805 | 421238680 | 421238307 | 7.500000e-104 | 388.0 |
21 | TraesCS3D01G219900 | chr3B | 95.954 | 173 | 7 | 0 | 5998 | 6170 | 421228956 | 421228784 | 1.310000e-71 | 281.0 |
22 | TraesCS3D01G219900 | chr3B | 93.243 | 74 | 3 | 2 | 656 | 727 | 421240731 | 421240658 | 2.350000e-19 | 108.0 |
23 | TraesCS3D01G219900 | chr3B | 93.651 | 63 | 3 | 1 | 4627 | 4688 | 393256715 | 393256777 | 6.590000e-15 | 93.5 |
24 | TraesCS3D01G219900 | chr3B | 90.476 | 63 | 6 | 0 | 746 | 808 | 421240660 | 421240598 | 3.960000e-12 | 84.2 |
25 | TraesCS3D01G219900 | chr3B | 97.436 | 39 | 1 | 0 | 852 | 890 | 421240534 | 421240496 | 3.990000e-07 | 67.6 |
26 | TraesCS3D01G219900 | chr5D | 98.732 | 631 | 8 | 0 | 1 | 631 | 285861080 | 285860450 | 0.000000e+00 | 1122.0 |
27 | TraesCS3D01G219900 | chr7D | 98.257 | 631 | 11 | 0 | 1 | 631 | 403564639 | 403565269 | 0.000000e+00 | 1105.0 |
28 | TraesCS3D01G219900 | chr1B | 97.930 | 628 | 13 | 0 | 2 | 629 | 340612814 | 340612187 | 0.000000e+00 | 1088.0 |
29 | TraesCS3D01G219900 | chr2A | 96.032 | 630 | 23 | 2 | 2 | 630 | 625086729 | 625087357 | 0.000000e+00 | 1024.0 |
30 | TraesCS3D01G219900 | chr2A | 92.222 | 630 | 46 | 3 | 1 | 630 | 510289087 | 510288461 | 0.000000e+00 | 889.0 |
31 | TraesCS3D01G219900 | chr5A | 87.004 | 831 | 58 | 20 | 3892 | 4688 | 679161733 | 679160919 | 0.000000e+00 | 891.0 |
32 | TraesCS3D01G219900 | chr2D | 91.772 | 632 | 44 | 4 | 1 | 631 | 147911917 | 147912541 | 0.000000e+00 | 872.0 |
33 | TraesCS3D01G219900 | chr6B | 91.139 | 632 | 55 | 1 | 1 | 632 | 189526563 | 189525933 | 0.000000e+00 | 856.0 |
34 | TraesCS3D01G219900 | chr1D | 95.281 | 445 | 20 | 1 | 3161 | 3605 | 356420417 | 356420860 | 0.000000e+00 | 704.0 |
35 | TraesCS3D01G219900 | chr1D | 93.548 | 248 | 14 | 2 | 3161 | 3407 | 209727680 | 209727926 | 9.770000e-98 | 368.0 |
36 | TraesCS3D01G219900 | chr1D | 96.651 | 209 | 7 | 0 | 3398 | 3606 | 209727979 | 209728187 | 1.270000e-91 | 348.0 |
37 | TraesCS3D01G219900 | chr7A | 93.708 | 445 | 27 | 1 | 3161 | 3605 | 47710519 | 47710076 | 0.000000e+00 | 665.0 |
38 | TraesCS3D01G219900 | chr6A | 93.556 | 450 | 23 | 2 | 3161 | 3605 | 474449234 | 474448786 | 0.000000e+00 | 665.0 |
39 | TraesCS3D01G219900 | chr6A | 93.939 | 429 | 20 | 2 | 3182 | 3605 | 474879068 | 474878641 | 1.450000e-180 | 643.0 |
40 | TraesCS3D01G219900 | chr2B | 93.176 | 425 | 19 | 2 | 3633 | 4057 | 782976096 | 782975682 | 3.160000e-172 | 616.0 |
41 | TraesCS3D01G219900 | chr2B | 92.706 | 425 | 21 | 2 | 3633 | 4057 | 782991064 | 782990650 | 6.840000e-169 | 604.0 |
42 | TraesCS3D01G219900 | chr2B | 92.488 | 426 | 21 | 3 | 3633 | 4057 | 782851609 | 782851194 | 3.180000e-167 | 599.0 |
43 | TraesCS3D01G219900 | chr7B | 92.610 | 433 | 20 | 4 | 3633 | 4065 | 677531254 | 677531674 | 4.090000e-171 | 612.0 |
44 | TraesCS3D01G219900 | chr7B | 95.238 | 63 | 2 | 1 | 4627 | 4688 | 4990111 | 4990173 | 1.420000e-16 | 99.0 |
45 | TraesCS3D01G219900 | chr5B | 91.917 | 433 | 23 | 4 | 3633 | 4065 | 686451800 | 686452220 | 4.120000e-166 | 595.0 |
46 | TraesCS3D01G219900 | chr5B | 94.606 | 241 | 12 | 1 | 3161 | 3401 | 203063629 | 203063390 | 7.550000e-99 | 372.0 |
47 | TraesCS3D01G219900 | chr5B | 96.135 | 207 | 8 | 0 | 3398 | 3604 | 203063310 | 203063104 | 7.660000e-89 | 339.0 |
48 | TraesCS3D01G219900 | chr1A | 91.481 | 270 | 11 | 4 | 3796 | 4065 | 58292401 | 58292144 | 1.640000e-95 | 361.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G219900 | chr3D | 299905753 | 299911922 | 6169 | False | 5474.000000 | 5768 | 100.000000 | 1 | 6170 | 2 | chr3D.!!$F1 | 6169 |
1 | TraesCS3D01G219900 | chr3D | 246893028 | 246893657 | 629 | True | 1020.000000 | 1020 | 95.880000 | 1 | 631 | 1 | chr3D.!!$R1 | 630 |
2 | TraesCS3D01G219900 | chr3D | 558000295 | 558000923 | 628 | True | 1018.000000 | 1018 | 95.873000 | 2 | 631 | 1 | chr3D.!!$R2 | 629 |
3 | TraesCS3D01G219900 | chr3A | 435802631 | 435809116 | 6485 | True | 1055.771429 | 2252 | 94.327286 | 740 | 6170 | 7 | chr3A.!!$R2 | 5430 |
4 | TraesCS3D01G219900 | chr3A | 575786367 | 575787155 | 788 | False | 926.000000 | 926 | 88.163000 | 3899 | 4688 | 1 | chr3A.!!$F1 | 789 |
5 | TraesCS3D01G219900 | chr3B | 421235825 | 421240731 | 4906 | True | 886.542857 | 2244 | 93.616571 | 656 | 5383 | 7 | chr3B.!!$R3 | 4727 |
6 | TraesCS3D01G219900 | chr3B | 421228784 | 421229420 | 636 | True | 435.500000 | 590 | 93.916500 | 5571 | 6170 | 2 | chr3B.!!$R2 | 599 |
7 | TraesCS3D01G219900 | chr5D | 285860450 | 285861080 | 630 | True | 1122.000000 | 1122 | 98.732000 | 1 | 631 | 1 | chr5D.!!$R1 | 630 |
8 | TraesCS3D01G219900 | chr7D | 403564639 | 403565269 | 630 | False | 1105.000000 | 1105 | 98.257000 | 1 | 631 | 1 | chr7D.!!$F1 | 630 |
9 | TraesCS3D01G219900 | chr1B | 340612187 | 340612814 | 627 | True | 1088.000000 | 1088 | 97.930000 | 2 | 629 | 1 | chr1B.!!$R1 | 627 |
10 | TraesCS3D01G219900 | chr2A | 625086729 | 625087357 | 628 | False | 1024.000000 | 1024 | 96.032000 | 2 | 630 | 1 | chr2A.!!$F1 | 628 |
11 | TraesCS3D01G219900 | chr2A | 510288461 | 510289087 | 626 | True | 889.000000 | 889 | 92.222000 | 1 | 630 | 1 | chr2A.!!$R1 | 629 |
12 | TraesCS3D01G219900 | chr5A | 679160919 | 679161733 | 814 | True | 891.000000 | 891 | 87.004000 | 3892 | 4688 | 1 | chr5A.!!$R1 | 796 |
13 | TraesCS3D01G219900 | chr2D | 147911917 | 147912541 | 624 | False | 872.000000 | 872 | 91.772000 | 1 | 631 | 1 | chr2D.!!$F1 | 630 |
14 | TraesCS3D01G219900 | chr6B | 189525933 | 189526563 | 630 | True | 856.000000 | 856 | 91.139000 | 1 | 632 | 1 | chr6B.!!$R1 | 631 |
15 | TraesCS3D01G219900 | chr1D | 209727680 | 209728187 | 507 | False | 358.000000 | 368 | 95.099500 | 3161 | 3606 | 2 | chr1D.!!$F2 | 445 |
16 | TraesCS3D01G219900 | chr5B | 203063104 | 203063629 | 525 | True | 355.500000 | 372 | 95.370500 | 3161 | 3604 | 2 | chr5B.!!$R1 | 443 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
667 | 669 | 0.108019 | GTCGGTGGAGTCAAAACCCT | 59.892 | 55.000 | 0.0 | 0.0 | 0.00 | 4.34 | F |
777 | 779 | 0.185175 | AACCACGGAGAAAAGCCCTT | 59.815 | 50.000 | 0.0 | 0.0 | 0.00 | 3.95 | F |
2322 | 2468 | 0.179048 | CTGGCTGGATATGGTTCGCA | 60.179 | 55.000 | 0.0 | 0.0 | 0.00 | 5.10 | F |
2339 | 2485 | 1.003233 | CGCACCTTCTAACCCCTTCTT | 59.997 | 52.381 | 0.0 | 0.0 | 0.00 | 2.52 | F |
3104 | 3648 | 1.205893 | TGTTGCCTTGTTGGTTTGACC | 59.794 | 47.619 | 0.0 | 0.0 | 39.22 | 4.02 | F |
4980 | 6914 | 1.154413 | GTTGGTCATCGTGCTTGCG | 60.154 | 57.895 | 0.0 | 0.0 | 0.00 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2303 | 2449 | 0.179048 | TGCGAACCATATCCAGCCAG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 | R |
2409 | 2680 | 2.308866 | ACAAGGTACCCTTCCATTCTGG | 59.691 | 50.000 | 8.74 | 0.00 | 42.67 | 3.86 | R |
3125 | 3669 | 0.035725 | TGCTCTCCAATGGACAGCAG | 60.036 | 55.000 | 24.99 | 8.03 | 45.97 | 4.24 | R |
3707 | 4627 | 1.218316 | GGTAGCAAGGTCCCTCACG | 59.782 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 | R |
5013 | 6947 | 1.956477 | TCTTTGGCCAAGCTTGAGAAC | 59.044 | 47.619 | 28.05 | 14.12 | 31.70 | 3.01 | R |
5841 | 7797 | 0.999406 | ACGCACGTACATGCAATCTC | 59.001 | 50.000 | 15.00 | 0.00 | 46.47 | 2.75 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
647 | 649 | 2.755952 | AAATGATGGCCCTAACCTCC | 57.244 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
648 | 650 | 0.474184 | AATGATGGCCCTAACCTCCG | 59.526 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
649 | 651 | 0.694444 | ATGATGGCCCTAACCTCCGT | 60.694 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
650 | 652 | 1.335132 | TGATGGCCCTAACCTCCGTC | 61.335 | 60.000 | 0.00 | 0.00 | 36.64 | 4.79 |
651 | 653 | 2.365095 | GATGGCCCTAACCTCCGTCG | 62.365 | 65.000 | 0.00 | 0.00 | 0.00 | 5.12 |
652 | 654 | 3.846430 | GGCCCTAACCTCCGTCGG | 61.846 | 72.222 | 4.39 | 4.39 | 0.00 | 4.79 |
653 | 655 | 3.073101 | GCCCTAACCTCCGTCGGT | 61.073 | 66.667 | 11.88 | 0.00 | 39.48 | 4.69 |
654 | 656 | 2.890371 | CCCTAACCTCCGTCGGTG | 59.110 | 66.667 | 11.88 | 8.95 | 37.36 | 4.94 |
655 | 657 | 2.718073 | CCCTAACCTCCGTCGGTGG | 61.718 | 68.421 | 26.94 | 26.94 | 41.65 | 4.61 |
656 | 658 | 1.679977 | CCTAACCTCCGTCGGTGGA | 60.680 | 63.158 | 33.37 | 15.02 | 38.51 | 4.02 |
663 | 665 | 2.126064 | TCCGTCGGTGGAGTCAAAA | 58.874 | 52.632 | 11.88 | 0.00 | 33.05 | 2.44 |
666 | 668 | 1.226030 | CGTCGGTGGAGTCAAAACCC | 61.226 | 60.000 | 0.00 | 0.00 | 0.00 | 4.11 |
667 | 669 | 0.108019 | GTCGGTGGAGTCAAAACCCT | 59.892 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
686 | 688 | 2.232452 | CCTATTCTCGCCCTAGGTCATG | 59.768 | 54.545 | 8.29 | 0.00 | 0.00 | 3.07 |
688 | 690 | 1.686325 | TTCTCGCCCTAGGTCATGGC | 61.686 | 60.000 | 8.29 | 2.20 | 41.85 | 4.40 |
692 | 694 | 3.142393 | CCCTAGGTCATGGCCTCG | 58.858 | 66.667 | 25.34 | 17.43 | 39.94 | 4.63 |
724 | 726 | 6.749923 | ATTCATCAGGTGCTCTTCTAAAAC | 57.250 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
725 | 727 | 4.579869 | TCATCAGGTGCTCTTCTAAAACC | 58.420 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
726 | 728 | 4.287067 | TCATCAGGTGCTCTTCTAAAACCT | 59.713 | 41.667 | 0.00 | 0.00 | 41.99 | 3.50 |
727 | 729 | 4.706842 | TCAGGTGCTCTTCTAAAACCTT | 57.293 | 40.909 | 0.00 | 0.00 | 39.24 | 3.50 |
728 | 730 | 5.048846 | TCAGGTGCTCTTCTAAAACCTTT | 57.951 | 39.130 | 0.00 | 0.00 | 39.24 | 3.11 |
729 | 731 | 5.445964 | TCAGGTGCTCTTCTAAAACCTTTT | 58.554 | 37.500 | 0.00 | 0.00 | 39.24 | 2.27 |
730 | 732 | 5.891551 | TCAGGTGCTCTTCTAAAACCTTTTT | 59.108 | 36.000 | 0.00 | 0.00 | 39.24 | 1.94 |
777 | 779 | 0.185175 | AACCACGGAGAAAAGCCCTT | 59.815 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
780 | 782 | 1.604604 | CACGGAGAAAAGCCCTTGAA | 58.395 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
787 | 789 | 4.281941 | GGAGAAAAGCCCTTGAAGTTGAAT | 59.718 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
796 | 798 | 5.291971 | CCCTTGAAGTTGAATTTGAACTGG | 58.708 | 41.667 | 1.89 | 0.00 | 33.85 | 4.00 |
808 | 810 | 1.757682 | TGAACTGGCTTCCACGTTTT | 58.242 | 45.000 | 0.00 | 0.00 | 29.77 | 2.43 |
809 | 811 | 2.096248 | TGAACTGGCTTCCACGTTTTT | 58.904 | 42.857 | 0.00 | 0.00 | 29.77 | 1.94 |
1692 | 1826 | 4.283337 | TCTTCTACACCGTCATATTCCCA | 58.717 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
1710 | 1844 | 1.656652 | CATTCATCGCCTTCTTCGGT | 58.343 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1963 | 2097 | 3.243839 | ACCTTGGAATGTGCAAATGTCAC | 60.244 | 43.478 | 0.00 | 0.00 | 35.14 | 3.67 |
2064 | 2198 | 7.042051 | TGGTTATTCGAGAACAAAACTTCTCTG | 60.042 | 37.037 | 12.65 | 2.39 | 42.82 | 3.35 |
2066 | 2200 | 5.968387 | TTCGAGAACAAAACTTCTCTGTC | 57.032 | 39.130 | 7.22 | 0.00 | 42.82 | 3.51 |
2082 | 2216 | 4.396478 | TCTCTGTCTCAGAATGGTTAGACG | 59.604 | 45.833 | 1.22 | 0.00 | 39.53 | 4.18 |
2100 | 2234 | 4.122776 | AGACGGCTGATGATGACATAAAC | 58.877 | 43.478 | 0.00 | 0.00 | 36.82 | 2.01 |
2105 | 2239 | 4.067896 | GCTGATGATGACATAAACGGGAT | 58.932 | 43.478 | 0.00 | 0.00 | 36.82 | 3.85 |
2120 | 2254 | 2.271800 | CGGGATGTGCTCTTTGTAGTC | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
2213 | 2359 | 4.430007 | TGCTTTCTGCTACGAATATCGTT | 58.570 | 39.130 | 10.91 | 0.00 | 46.58 | 3.85 |
2297 | 2443 | 8.980143 | ACTGGTTGTGTATATTTGTTTTATGC | 57.020 | 30.769 | 0.00 | 0.00 | 0.00 | 3.14 |
2303 | 2449 | 8.749841 | TGTGTATATTTGTTTTATGCAACACC | 57.250 | 30.769 | 6.92 | 0.00 | 36.36 | 4.16 |
2322 | 2468 | 0.179048 | CTGGCTGGATATGGTTCGCA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.10 |
2339 | 2485 | 1.003233 | CGCACCTTCTAACCCCTTCTT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
2352 | 2623 | 9.589461 | TCTAACCCCTTCTTAGATAGTTATGAG | 57.411 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2353 | 2624 | 6.673839 | ACCCCTTCTTAGATAGTTATGAGC | 57.326 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2355 | 2626 | 6.615726 | ACCCCTTCTTAGATAGTTATGAGCAA | 59.384 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
2356 | 2627 | 7.293535 | ACCCCTTCTTAGATAGTTATGAGCAAT | 59.706 | 37.037 | 0.00 | 0.00 | 0.00 | 3.56 |
2368 | 2639 | 7.313951 | AGTTATGAGCAATTTAGTCTTGAGC | 57.686 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2369 | 2640 | 6.881065 | AGTTATGAGCAATTTAGTCTTGAGCA | 59.119 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
2370 | 2641 | 7.391554 | AGTTATGAGCAATTTAGTCTTGAGCAA | 59.608 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2371 | 2642 | 6.579666 | ATGAGCAATTTAGTCTTGAGCAAA | 57.420 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
2372 | 2643 | 6.005583 | TGAGCAATTTAGTCTTGAGCAAAG | 57.994 | 37.500 | 0.00 | 0.00 | 37.22 | 2.77 |
2373 | 2644 | 4.802999 | AGCAATTTAGTCTTGAGCAAAGC | 58.197 | 39.130 | 0.00 | 0.00 | 35.69 | 3.51 |
2374 | 2645 | 4.522022 | AGCAATTTAGTCTTGAGCAAAGCT | 59.478 | 37.500 | 0.00 | 0.00 | 43.88 | 3.74 |
2375 | 2646 | 5.707298 | AGCAATTTAGTCTTGAGCAAAGCTA | 59.293 | 36.000 | 0.00 | 0.00 | 39.88 | 3.32 |
2376 | 2647 | 6.207417 | AGCAATTTAGTCTTGAGCAAAGCTAA | 59.793 | 34.615 | 0.00 | 9.71 | 39.88 | 3.09 |
2377 | 2648 | 7.031975 | GCAATTTAGTCTTGAGCAAAGCTAAT | 58.968 | 34.615 | 12.37 | 0.00 | 39.88 | 1.73 |
2378 | 2649 | 7.008992 | GCAATTTAGTCTTGAGCAAAGCTAATG | 59.991 | 37.037 | 12.37 | 0.00 | 39.88 | 1.90 |
2379 | 2650 | 6.500684 | TTTAGTCTTGAGCAAAGCTAATGG | 57.499 | 37.500 | 12.37 | 0.00 | 39.88 | 3.16 |
2380 | 2651 | 4.026356 | AGTCTTGAGCAAAGCTAATGGT | 57.974 | 40.909 | 4.00 | 4.00 | 39.88 | 3.55 |
2381 | 2652 | 5.165961 | AGTCTTGAGCAAAGCTAATGGTA | 57.834 | 39.130 | 4.32 | 0.00 | 39.88 | 3.25 |
2382 | 2653 | 5.181748 | AGTCTTGAGCAAAGCTAATGGTAG | 58.818 | 41.667 | 4.32 | 0.85 | 39.88 | 3.18 |
2383 | 2654 | 4.333926 | GTCTTGAGCAAAGCTAATGGTAGG | 59.666 | 45.833 | 4.32 | 0.00 | 39.88 | 3.18 |
2384 | 2655 | 4.019321 | TCTTGAGCAAAGCTAATGGTAGGT | 60.019 | 41.667 | 4.32 | 0.00 | 39.88 | 3.08 |
2393 | 2664 | 6.358974 | AAGCTAATGGTAGGTTTTTGCATT | 57.641 | 33.333 | 0.00 | 0.00 | 43.88 | 3.56 |
2394 | 2665 | 7.475137 | AAGCTAATGGTAGGTTTTTGCATTA | 57.525 | 32.000 | 0.00 | 0.00 | 43.88 | 1.90 |
2395 | 2666 | 7.660030 | AGCTAATGGTAGGTTTTTGCATTAT | 57.340 | 32.000 | 0.00 | 0.00 | 34.31 | 1.28 |
2396 | 2667 | 7.491682 | AGCTAATGGTAGGTTTTTGCATTATG | 58.508 | 34.615 | 0.00 | 0.00 | 34.31 | 1.90 |
2397 | 2668 | 7.341769 | AGCTAATGGTAGGTTTTTGCATTATGA | 59.658 | 33.333 | 0.00 | 0.00 | 34.31 | 2.15 |
2398 | 2669 | 7.435192 | GCTAATGGTAGGTTTTTGCATTATGAC | 59.565 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
2399 | 2670 | 7.480760 | AATGGTAGGTTTTTGCATTATGACT | 57.519 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2400 | 2671 | 8.588290 | AATGGTAGGTTTTTGCATTATGACTA | 57.412 | 30.769 | 0.00 | 0.00 | 0.00 | 2.59 |
2401 | 2672 | 7.385778 | TGGTAGGTTTTTGCATTATGACTAC | 57.614 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2402 | 2673 | 7.172342 | TGGTAGGTTTTTGCATTATGACTACT | 58.828 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2403 | 2674 | 7.668052 | TGGTAGGTTTTTGCATTATGACTACTT | 59.332 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2404 | 2675 | 8.182227 | GGTAGGTTTTTGCATTATGACTACTTC | 58.818 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2405 | 2676 | 8.947115 | GTAGGTTTTTGCATTATGACTACTTCT | 58.053 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2406 | 2677 | 8.045176 | AGGTTTTTGCATTATGACTACTTCTC | 57.955 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
2407 | 2678 | 7.885399 | AGGTTTTTGCATTATGACTACTTCTCT | 59.115 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
2408 | 2679 | 8.515414 | GGTTTTTGCATTATGACTACTTCTCTT | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2409 | 2680 | 9.548208 | GTTTTTGCATTATGACTACTTCTCTTC | 57.452 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
2410 | 2681 | 7.849804 | TTTGCATTATGACTACTTCTCTTCC | 57.150 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2411 | 2682 | 6.544928 | TGCATTATGACTACTTCTCTTCCA | 57.455 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
2513 | 2909 | 4.067896 | TCAGGACAGCATTTCTGAAACTC | 58.932 | 43.478 | 4.73 | 0.47 | 45.72 | 3.01 |
2514 | 2910 | 3.817084 | CAGGACAGCATTTCTGAAACTCA | 59.183 | 43.478 | 4.73 | 0.00 | 45.72 | 3.41 |
2537 | 2933 | 9.706691 | CTCACTAAAAATAAGTGTACAGAAGGA | 57.293 | 33.333 | 0.00 | 0.00 | 43.88 | 3.36 |
2538 | 2934 | 9.706691 | TCACTAAAAATAAGTGTACAGAAGGAG | 57.293 | 33.333 | 0.00 | 0.00 | 43.88 | 3.69 |
2553 | 2969 | 6.872920 | ACAGAAGGAGAACAGAGATAATGTC | 58.127 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2578 | 2994 | 7.528481 | TGAAAATATTCAGCATTGCATTGTC | 57.472 | 32.000 | 11.91 | 6.64 | 40.59 | 3.18 |
2579 | 2995 | 7.097834 | TGAAAATATTCAGCATTGCATTGTCA | 58.902 | 30.769 | 11.91 | 9.06 | 40.59 | 3.58 |
2580 | 2996 | 7.766738 | TGAAAATATTCAGCATTGCATTGTCAT | 59.233 | 29.630 | 11.91 | 1.91 | 40.59 | 3.06 |
2581 | 2997 | 7.477144 | AAATATTCAGCATTGCATTGTCATG | 57.523 | 32.000 | 11.91 | 0.86 | 0.00 | 3.07 |
2595 | 3011 | 3.912496 | TGTCATGCTTAGCACCTGTAT | 57.088 | 42.857 | 9.82 | 0.00 | 43.04 | 2.29 |
2603 | 3019 | 4.824537 | TGCTTAGCACCTGTATGTTTTCAA | 59.175 | 37.500 | 1.39 | 0.00 | 31.71 | 2.69 |
2652 | 3068 | 8.770828 | TGGCTATTCTTGTTAAGTTATTATCGC | 58.229 | 33.333 | 0.00 | 0.00 | 0.00 | 4.58 |
2766 | 3182 | 1.352352 | AGCCTGCATTGTGACTTAGGT | 59.648 | 47.619 | 0.00 | 0.00 | 0.00 | 3.08 |
3078 | 3494 | 3.501349 | TGAAGAGTAGGAGCTCACTGTT | 58.499 | 45.455 | 17.19 | 15.45 | 37.94 | 3.16 |
3089 | 3633 | 2.614057 | AGCTCACTGTTGTAGTTGTTGC | 59.386 | 45.455 | 0.00 | 0.00 | 37.60 | 4.17 |
3090 | 3634 | 2.287009 | GCTCACTGTTGTAGTTGTTGCC | 60.287 | 50.000 | 0.00 | 0.00 | 37.60 | 4.52 |
3091 | 3635 | 3.206150 | CTCACTGTTGTAGTTGTTGCCT | 58.794 | 45.455 | 0.00 | 0.00 | 37.60 | 4.75 |
3092 | 3636 | 3.616219 | TCACTGTTGTAGTTGTTGCCTT | 58.384 | 40.909 | 0.00 | 0.00 | 37.60 | 4.35 |
3093 | 3637 | 3.376859 | TCACTGTTGTAGTTGTTGCCTTG | 59.623 | 43.478 | 0.00 | 0.00 | 37.60 | 3.61 |
3094 | 3638 | 3.128589 | CACTGTTGTAGTTGTTGCCTTGT | 59.871 | 43.478 | 0.00 | 0.00 | 37.60 | 3.16 |
3095 | 3639 | 3.761752 | ACTGTTGTAGTTGTTGCCTTGTT | 59.238 | 39.130 | 0.00 | 0.00 | 35.67 | 2.83 |
3096 | 3640 | 4.103365 | TGTTGTAGTTGTTGCCTTGTTG | 57.897 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
3097 | 3641 | 3.119316 | TGTTGTAGTTGTTGCCTTGTTGG | 60.119 | 43.478 | 0.00 | 0.00 | 39.35 | 3.77 |
3098 | 3642 | 2.729194 | TGTAGTTGTTGCCTTGTTGGT | 58.271 | 42.857 | 0.00 | 0.00 | 38.35 | 3.67 |
3099 | 3643 | 3.093057 | TGTAGTTGTTGCCTTGTTGGTT | 58.907 | 40.909 | 0.00 | 0.00 | 38.35 | 3.67 |
3100 | 3644 | 3.511934 | TGTAGTTGTTGCCTTGTTGGTTT | 59.488 | 39.130 | 0.00 | 0.00 | 38.35 | 3.27 |
3101 | 3645 | 2.971307 | AGTTGTTGCCTTGTTGGTTTG | 58.029 | 42.857 | 0.00 | 0.00 | 38.35 | 2.93 |
3102 | 3646 | 2.564947 | AGTTGTTGCCTTGTTGGTTTGA | 59.435 | 40.909 | 0.00 | 0.00 | 38.35 | 2.69 |
3103 | 3647 | 2.663826 | TGTTGCCTTGTTGGTTTGAC | 57.336 | 45.000 | 0.00 | 0.00 | 38.35 | 3.18 |
3104 | 3648 | 1.205893 | TGTTGCCTTGTTGGTTTGACC | 59.794 | 47.619 | 0.00 | 0.00 | 39.22 | 4.02 |
3115 | 3659 | 2.461695 | TGGTTTGACCATGGTGTTTGT | 58.538 | 42.857 | 25.52 | 0.00 | 44.79 | 2.83 |
3116 | 3660 | 3.632333 | TGGTTTGACCATGGTGTTTGTA | 58.368 | 40.909 | 25.52 | 1.35 | 44.79 | 2.41 |
3117 | 3661 | 4.219115 | TGGTTTGACCATGGTGTTTGTAT | 58.781 | 39.130 | 25.52 | 0.00 | 44.79 | 2.29 |
3118 | 3662 | 4.651503 | TGGTTTGACCATGGTGTTTGTATT | 59.348 | 37.500 | 25.52 | 0.00 | 44.79 | 1.89 |
3119 | 3663 | 4.987912 | GGTTTGACCATGGTGTTTGTATTG | 59.012 | 41.667 | 25.52 | 0.00 | 38.42 | 1.90 |
3120 | 3664 | 3.932545 | TGACCATGGTGTTTGTATTGC | 57.067 | 42.857 | 25.52 | 3.80 | 0.00 | 3.56 |
3121 | 3665 | 3.495331 | TGACCATGGTGTTTGTATTGCT | 58.505 | 40.909 | 25.52 | 0.00 | 0.00 | 3.91 |
3122 | 3666 | 3.255395 | TGACCATGGTGTTTGTATTGCTG | 59.745 | 43.478 | 25.52 | 0.00 | 0.00 | 4.41 |
3123 | 3667 | 3.230134 | ACCATGGTGTTTGTATTGCTGT | 58.770 | 40.909 | 18.99 | 0.00 | 0.00 | 4.40 |
3124 | 3668 | 3.255642 | ACCATGGTGTTTGTATTGCTGTC | 59.744 | 43.478 | 18.99 | 0.00 | 0.00 | 3.51 |
3125 | 3669 | 3.367292 | CCATGGTGTTTGTATTGCTGTCC | 60.367 | 47.826 | 2.57 | 0.00 | 0.00 | 4.02 |
3196 | 4031 | 3.383761 | GCTTTGTTTGTCCATGTCCTTG | 58.616 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
3767 | 4687 | 7.412853 | GCATTAGTATCAATCTTGTGGAAGTG | 58.587 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
4141 | 5079 | 1.241315 | GGCTGTTTATGTGGGTGCGT | 61.241 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
4188 | 5126 | 4.453136 | GCAAAGTACAGTTTATTCGACCCA | 59.547 | 41.667 | 0.00 | 0.00 | 0.00 | 4.51 |
4327 | 5269 | 9.903682 | ATTCATTTACTGATGTTCTTTTCTGTG | 57.096 | 29.630 | 0.00 | 0.00 | 32.72 | 3.66 |
4447 | 5664 | 3.698029 | AATTATCGGTTGCTGTCATGC | 57.302 | 42.857 | 0.00 | 0.00 | 0.00 | 4.06 |
4493 | 6414 | 8.950210 | TGATAATCTGTTCAATTTTCTCAGGAC | 58.050 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
4498 | 6419 | 3.401033 | TCAATTTTCTCAGGACGCAGA | 57.599 | 42.857 | 0.00 | 0.00 | 0.00 | 4.26 |
4504 | 6425 | 2.064434 | TCTCAGGACGCAGATGAGAT | 57.936 | 50.000 | 6.22 | 0.00 | 43.36 | 2.75 |
4567 | 6488 | 4.451900 | CATGGTCCTGTAGTTGGATAACC | 58.548 | 47.826 | 0.00 | 0.00 | 37.52 | 2.85 |
4592 | 6513 | 5.128663 | ACATTACTTGTTTTTCCCTGCTGTT | 59.871 | 36.000 | 0.00 | 0.00 | 33.74 | 3.16 |
4604 | 6535 | 2.287788 | CCCTGCTGTTGAATGTGTTGTC | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4618 | 6549 | 4.765273 | TGTGTTGTCATGTGTTGTAGACT | 58.235 | 39.130 | 0.00 | 0.00 | 32.41 | 3.24 |
4623 | 6554 | 9.151471 | GTGTTGTCATGTGTTGTAGACTTATAT | 57.849 | 33.333 | 0.00 | 0.00 | 32.41 | 0.86 |
4642 | 6573 | 9.062524 | ACTTATATGTACTTTCAACAAGTGCAA | 57.937 | 29.630 | 9.17 | 1.48 | 43.92 | 4.08 |
4774 | 6708 | 8.860780 | AGCTAATTCTCAATTCTTCAGAACTT | 57.139 | 30.769 | 0.00 | 0.00 | 36.80 | 2.66 |
4805 | 6739 | 2.827322 | ACCATTGTTATGCTGCACATGT | 59.173 | 40.909 | 3.57 | 0.00 | 40.06 | 3.21 |
4822 | 6756 | 5.561919 | GCACATGTTAACTTTGGTTCGATCA | 60.562 | 40.000 | 7.22 | 0.00 | 36.92 | 2.92 |
4890 | 6824 | 4.947147 | GGCAAGTCGGGTGGTGCA | 62.947 | 66.667 | 0.00 | 0.00 | 38.78 | 4.57 |
4953 | 6887 | 1.305887 | CTCGACCCCCTACCTTGGT | 60.306 | 63.158 | 0.00 | 0.00 | 34.33 | 3.67 |
4980 | 6914 | 1.154413 | GTTGGTCATCGTGCTTGCG | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
5013 | 6947 | 2.159282 | GGCAAGATCATTGGACAAGCAG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
5095 | 7029 | 1.456287 | GCACCCAAGGAACCTGAGT | 59.544 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
5261 | 7201 | 5.468746 | TGAAGGAACGATTGACGATTTCTTT | 59.531 | 36.000 | 0.00 | 0.00 | 45.77 | 2.52 |
5263 | 7203 | 4.392138 | AGGAACGATTGACGATTTCTTTCC | 59.608 | 41.667 | 0.00 | 0.00 | 45.77 | 3.13 |
5264 | 7204 | 4.153475 | GGAACGATTGACGATTTCTTTCCA | 59.847 | 41.667 | 0.00 | 0.00 | 45.77 | 3.53 |
5265 | 7205 | 4.928661 | ACGATTGACGATTTCTTTCCAG | 57.071 | 40.909 | 0.00 | 0.00 | 45.77 | 3.86 |
5312 | 7254 | 4.079253 | AGGTGCTGGTTAGTTTGTAATGG | 58.921 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
5339 | 7281 | 2.086610 | ATTTTGACAACTGGCCTGGT | 57.913 | 45.000 | 14.82 | 4.00 | 0.00 | 4.00 |
5399 | 7342 | 7.840342 | TTGCAATTACAACACACAGATTTTT | 57.160 | 28.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5400 | 7343 | 8.932945 | TTGCAATTACAACACACAGATTTTTA | 57.067 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
5401 | 7344 | 9.539825 | TTGCAATTACAACACACAGATTTTTAT | 57.460 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
5402 | 7345 | 9.539825 | TGCAATTACAACACACAGATTTTTATT | 57.460 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
5403 | 7346 | 9.796062 | GCAATTACAACACACAGATTTTTATTG | 57.204 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
5416 | 7359 | 7.379529 | ACAGATTTTTATTGTGTTCTCGCAAAG | 59.620 | 33.333 | 0.00 | 0.00 | 45.23 | 2.77 |
5421 | 7364 | 4.900635 | ATTGTGTTCTCGCAAAGTTTCT | 57.099 | 36.364 | 0.00 | 0.00 | 45.23 | 2.52 |
5435 | 7378 | 0.531974 | GTTTCTGTCACACGGGCTCA | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5439 | 7382 | 0.946221 | CTGTCACACGGGCTCAGAAC | 60.946 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5455 | 7406 | 5.392380 | GCTCAGAACTTTACCATGTCATTGG | 60.392 | 44.000 | 0.00 | 0.00 | 42.82 | 3.16 |
5464 | 7415 | 0.813184 | CATGTCATTGGTGCCTGGTC | 59.187 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5467 | 7418 | 0.036732 | GTCATTGGTGCCTGGTCTCA | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
5471 | 7422 | 1.909700 | TTGGTGCCTGGTCTCATTTC | 58.090 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5481 | 7432 | 2.290896 | TGGTCTCATTTCCGCTGGAATT | 60.291 | 45.455 | 10.19 | 5.23 | 41.71 | 2.17 |
5495 | 7446 | 3.620821 | GCTGGAATTGAACTGCTACTCTC | 59.379 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
5501 | 7452 | 7.014711 | TGGAATTGAACTGCTACTCTCTATAGG | 59.985 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
5556 | 7507 | 6.223852 | ACGGTAAGCCAACTATGATATCTTG | 58.776 | 40.000 | 3.98 | 0.07 | 34.09 | 3.02 |
5622 | 7578 | 4.840401 | TCGTATCAAACTTGCAATCTCG | 57.160 | 40.909 | 0.00 | 0.00 | 0.00 | 4.04 |
5623 | 7579 | 3.062099 | TCGTATCAAACTTGCAATCTCGC | 59.938 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
5670 | 7626 | 3.081804 | TCGACTATGACAGACAAGCAGA | 58.918 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
5732 | 7688 | 1.747355 | CAGAAACATGTGAGCCCATCC | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5756 | 7712 | 1.349688 | TGTTGCCCATTTCTAGGTCGT | 59.650 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
5823 | 7779 | 1.616159 | AGCAAACCCCATGTACACAC | 58.384 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
5824 | 7780 | 1.144913 | AGCAAACCCCATGTACACACT | 59.855 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
5825 | 7781 | 1.539827 | GCAAACCCCATGTACACACTC | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5826 | 7782 | 2.814097 | GCAAACCCCATGTACACACTCT | 60.814 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5829 | 7785 | 2.897350 | ACCCCATGTACACACTCTACA | 58.103 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
5841 | 7797 | 5.064558 | ACACACTCTACATATAGGAGGACG | 58.935 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
5958 | 7914 | 1.377725 | CTCGCCTGACCCATGCTTT | 60.378 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
6022 | 8028 | 8.763049 | AGTATTTGCTTAAATTGCTTCCTTTC | 57.237 | 30.769 | 0.00 | 0.00 | 0.00 | 2.62 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 2.930040 | CACGCGACTTCCATGTTAGATT | 59.070 | 45.455 | 15.93 | 0.00 | 0.00 | 2.40 |
509 | 510 | 2.177594 | CTCAGCACTCACCCACCTCC | 62.178 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
632 | 634 | 1.446366 | GACGGAGGTTAGGGCCATC | 59.554 | 63.158 | 6.18 | 0.00 | 0.00 | 3.51 |
633 | 635 | 2.432300 | CGACGGAGGTTAGGGCCAT | 61.432 | 63.158 | 6.18 | 0.00 | 0.00 | 4.40 |
634 | 636 | 3.072468 | CGACGGAGGTTAGGGCCA | 61.072 | 66.667 | 6.18 | 0.00 | 0.00 | 5.36 |
635 | 637 | 3.846430 | CCGACGGAGGTTAGGGCC | 61.846 | 72.222 | 8.64 | 0.00 | 0.00 | 5.80 |
636 | 638 | 3.073101 | ACCGACGGAGGTTAGGGC | 61.073 | 66.667 | 23.38 | 0.00 | 43.00 | 5.19 |
637 | 639 | 2.718073 | CCACCGACGGAGGTTAGGG | 61.718 | 68.421 | 23.38 | 6.12 | 43.00 | 3.53 |
638 | 640 | 1.679977 | TCCACCGACGGAGGTTAGG | 60.680 | 63.158 | 26.72 | 14.76 | 43.00 | 2.69 |
639 | 641 | 4.007457 | TCCACCGACGGAGGTTAG | 57.993 | 61.111 | 26.72 | 4.76 | 43.00 | 2.34 |
645 | 647 | 0.249573 | GTTTTGACTCCACCGACGGA | 60.250 | 55.000 | 23.38 | 0.00 | 0.00 | 4.69 |
646 | 648 | 1.226030 | GGTTTTGACTCCACCGACGG | 61.226 | 60.000 | 13.61 | 13.61 | 0.00 | 4.79 |
647 | 649 | 1.226030 | GGGTTTTGACTCCACCGACG | 61.226 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
648 | 650 | 0.108019 | AGGGTTTTGACTCCACCGAC | 59.892 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
649 | 651 | 1.719529 | TAGGGTTTTGACTCCACCGA | 58.280 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
650 | 652 | 2.781681 | ATAGGGTTTTGACTCCACCG | 57.218 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
651 | 653 | 4.262617 | GAGAATAGGGTTTTGACTCCACC | 58.737 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
652 | 654 | 3.933332 | CGAGAATAGGGTTTTGACTCCAC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
653 | 655 | 3.618997 | GCGAGAATAGGGTTTTGACTCCA | 60.619 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
654 | 656 | 2.937149 | GCGAGAATAGGGTTTTGACTCC | 59.063 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
655 | 657 | 2.937149 | GGCGAGAATAGGGTTTTGACTC | 59.063 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
656 | 658 | 2.355818 | GGGCGAGAATAGGGTTTTGACT | 60.356 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
657 | 659 | 2.014857 | GGGCGAGAATAGGGTTTTGAC | 58.985 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
658 | 660 | 1.913419 | AGGGCGAGAATAGGGTTTTGA | 59.087 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
659 | 661 | 2.420058 | AGGGCGAGAATAGGGTTTTG | 57.580 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
663 | 665 | 0.561680 | ACCTAGGGCGAGAATAGGGT | 59.438 | 55.000 | 14.81 | 0.00 | 40.40 | 4.34 |
666 | 668 | 2.232452 | CCATGACCTAGGGCGAGAATAG | 59.768 | 54.545 | 14.81 | 0.00 | 0.00 | 1.73 |
667 | 669 | 2.248248 | CCATGACCTAGGGCGAGAATA | 58.752 | 52.381 | 14.81 | 0.00 | 0.00 | 1.75 |
686 | 688 | 5.221342 | CCTGATGAATACCTATATCGAGGCC | 60.221 | 48.000 | 0.00 | 0.00 | 40.65 | 5.19 |
688 | 690 | 6.681616 | GCACCTGATGAATACCTATATCGAGG | 60.682 | 46.154 | 0.00 | 0.00 | 42.89 | 4.63 |
692 | 694 | 7.416964 | AGAGCACCTGATGAATACCTATATC | 57.583 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
731 | 733 | 4.501743 | GGCGGTGAGGGTTTTATTCAAAAA | 60.502 | 41.667 | 0.00 | 0.00 | 35.46 | 1.94 |
732 | 734 | 3.006003 | GGCGGTGAGGGTTTTATTCAAAA | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
733 | 735 | 2.559231 | GGCGGTGAGGGTTTTATTCAAA | 59.441 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
734 | 736 | 2.164338 | GGCGGTGAGGGTTTTATTCAA | 58.836 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
735 | 737 | 1.074084 | TGGCGGTGAGGGTTTTATTCA | 59.926 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
736 | 738 | 1.471287 | GTGGCGGTGAGGGTTTTATTC | 59.529 | 52.381 | 0.00 | 0.00 | 0.00 | 1.75 |
737 | 739 | 1.541379 | GTGGCGGTGAGGGTTTTATT | 58.459 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
738 | 740 | 0.323087 | GGTGGCGGTGAGGGTTTTAT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
777 | 779 | 5.451798 | GGAAGCCAGTTCAAATTCAACTTCA | 60.452 | 40.000 | 0.00 | 0.00 | 36.82 | 3.02 |
780 | 782 | 3.960102 | TGGAAGCCAGTTCAAATTCAACT | 59.040 | 39.130 | 0.00 | 0.00 | 36.82 | 3.16 |
787 | 789 | 1.757682 | AACGTGGAAGCCAGTTCAAA | 58.242 | 45.000 | 0.00 | 0.00 | 36.82 | 2.69 |
810 | 812 | 5.066246 | ACGTTACCGAAGTCCAATTCAAAAA | 59.934 | 36.000 | 0.00 | 0.00 | 37.88 | 1.94 |
811 | 813 | 4.575645 | ACGTTACCGAAGTCCAATTCAAAA | 59.424 | 37.500 | 0.00 | 0.00 | 37.88 | 2.44 |
812 | 814 | 4.024725 | CACGTTACCGAAGTCCAATTCAAA | 60.025 | 41.667 | 0.00 | 0.00 | 37.88 | 2.69 |
813 | 815 | 3.495377 | CACGTTACCGAAGTCCAATTCAA | 59.505 | 43.478 | 0.00 | 0.00 | 37.88 | 2.69 |
814 | 816 | 3.061322 | CACGTTACCGAAGTCCAATTCA | 58.939 | 45.455 | 0.00 | 0.00 | 37.88 | 2.57 |
815 | 817 | 3.319755 | TCACGTTACCGAAGTCCAATTC | 58.680 | 45.455 | 0.00 | 0.00 | 37.88 | 2.17 |
816 | 818 | 3.389925 | TCACGTTACCGAAGTCCAATT | 57.610 | 42.857 | 0.00 | 0.00 | 37.88 | 2.32 |
817 | 819 | 3.389925 | TTCACGTTACCGAAGTCCAAT | 57.610 | 42.857 | 0.00 | 0.00 | 37.88 | 3.16 |
818 | 820 | 2.886862 | TTCACGTTACCGAAGTCCAA | 57.113 | 45.000 | 0.00 | 0.00 | 37.88 | 3.53 |
819 | 821 | 2.886862 | TTTCACGTTACCGAAGTCCA | 57.113 | 45.000 | 0.00 | 0.00 | 37.88 | 4.02 |
820 | 822 | 3.557185 | ACTTTTTCACGTTACCGAAGTCC | 59.443 | 43.478 | 0.00 | 0.00 | 37.88 | 3.85 |
821 | 823 | 4.783959 | ACTTTTTCACGTTACCGAAGTC | 57.216 | 40.909 | 0.00 | 0.00 | 37.88 | 3.01 |
822 | 824 | 5.232838 | CACTACTTTTTCACGTTACCGAAGT | 59.767 | 40.000 | 0.00 | 0.00 | 37.88 | 3.01 |
823 | 825 | 5.332808 | CCACTACTTTTTCACGTTACCGAAG | 60.333 | 44.000 | 0.00 | 0.00 | 37.88 | 3.79 |
824 | 826 | 4.507388 | CCACTACTTTTTCACGTTACCGAA | 59.493 | 41.667 | 0.00 | 0.00 | 37.88 | 4.30 |
825 | 827 | 4.050553 | CCACTACTTTTTCACGTTACCGA | 58.949 | 43.478 | 0.00 | 0.00 | 37.88 | 4.69 |
826 | 828 | 3.184986 | CCCACTACTTTTTCACGTTACCG | 59.815 | 47.826 | 0.00 | 0.00 | 40.83 | 4.02 |
1176 | 1304 | 1.455959 | GAGAGAGAGGCCGGGCTTA | 60.456 | 63.158 | 33.28 | 0.00 | 0.00 | 3.09 |
1356 | 1484 | 0.322975 | AAGAGACGCCAGCACTGATT | 59.677 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1358 | 1486 | 1.005748 | CAAGAGACGCCAGCACTGA | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
1416 | 1550 | 1.122019 | ACTTCTTGACCTCCGGCTGT | 61.122 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1458 | 1592 | 0.537188 | GGGGCACGATCTTCTTGAGA | 59.463 | 55.000 | 0.00 | 0.00 | 39.13 | 3.27 |
1692 | 1826 | 1.482593 | AGACCGAAGAAGGCGATGAAT | 59.517 | 47.619 | 0.00 | 0.00 | 33.69 | 2.57 |
1963 | 2097 | 1.403780 | CCTGGAAACTAACGACGGGAG | 60.404 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2032 | 2166 | 3.319755 | TGTTCTCGAATAACCAACCGTC | 58.680 | 45.455 | 7.60 | 0.00 | 0.00 | 4.79 |
2064 | 2198 | 2.166664 | AGCCGTCTAACCATTCTGAGAC | 59.833 | 50.000 | 0.00 | 0.00 | 35.91 | 3.36 |
2066 | 2200 | 2.166459 | TCAGCCGTCTAACCATTCTGAG | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2082 | 2216 | 2.549754 | CCCGTTTATGTCATCATCAGCC | 59.450 | 50.000 | 0.00 | 0.00 | 35.70 | 4.85 |
2100 | 2234 | 2.271800 | GACTACAAAGAGCACATCCCG | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
2105 | 2239 | 5.756347 | ACAAAATACGACTACAAAGAGCACA | 59.244 | 36.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2120 | 2254 | 4.394920 | ACAATGCAGGACCTACAAAATACG | 59.605 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2297 | 2443 | 1.064463 | ACCATATCCAGCCAGGTGTTG | 60.064 | 52.381 | 0.00 | 0.00 | 39.02 | 3.33 |
2303 | 2449 | 0.179048 | TGCGAACCATATCCAGCCAG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2322 | 2468 | 6.754178 | ACTATCTAAGAAGGGGTTAGAAGGT | 58.246 | 40.000 | 0.00 | 0.00 | 39.40 | 3.50 |
2352 | 2623 | 4.802999 | AGCTTTGCTCAAGACTAAATTGC | 58.197 | 39.130 | 0.79 | 0.00 | 30.62 | 3.56 |
2353 | 2624 | 7.487189 | CCATTAGCTTTGCTCAAGACTAAATTG | 59.513 | 37.037 | 0.00 | 9.44 | 40.44 | 2.32 |
2355 | 2626 | 6.660949 | ACCATTAGCTTTGCTCAAGACTAAAT | 59.339 | 34.615 | 0.00 | 0.00 | 40.44 | 1.40 |
2356 | 2627 | 6.003950 | ACCATTAGCTTTGCTCAAGACTAAA | 58.996 | 36.000 | 0.00 | 0.00 | 40.44 | 1.85 |
2359 | 2630 | 4.026356 | ACCATTAGCTTTGCTCAAGACT | 57.974 | 40.909 | 0.00 | 1.06 | 40.44 | 3.24 |
2360 | 2631 | 4.333926 | CCTACCATTAGCTTTGCTCAAGAC | 59.666 | 45.833 | 0.00 | 0.00 | 40.44 | 3.01 |
2361 | 2632 | 4.019321 | ACCTACCATTAGCTTTGCTCAAGA | 60.019 | 41.667 | 0.00 | 0.00 | 40.44 | 3.02 |
2362 | 2633 | 4.265073 | ACCTACCATTAGCTTTGCTCAAG | 58.735 | 43.478 | 0.00 | 0.00 | 40.44 | 3.02 |
2363 | 2634 | 4.301072 | ACCTACCATTAGCTTTGCTCAA | 57.699 | 40.909 | 0.00 | 0.00 | 40.44 | 3.02 |
2364 | 2635 | 4.301072 | AACCTACCATTAGCTTTGCTCA | 57.699 | 40.909 | 0.00 | 0.00 | 40.44 | 4.26 |
2365 | 2636 | 5.644977 | AAAACCTACCATTAGCTTTGCTC | 57.355 | 39.130 | 0.00 | 0.00 | 40.44 | 4.26 |
2366 | 2637 | 5.783111 | CAAAAACCTACCATTAGCTTTGCT | 58.217 | 37.500 | 0.00 | 0.00 | 43.41 | 3.91 |
2367 | 2638 | 4.388773 | GCAAAAACCTACCATTAGCTTTGC | 59.611 | 41.667 | 0.00 | 0.00 | 37.06 | 3.68 |
2368 | 2639 | 5.537188 | TGCAAAAACCTACCATTAGCTTTG | 58.463 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
2369 | 2640 | 5.799827 | TGCAAAAACCTACCATTAGCTTT | 57.200 | 34.783 | 0.00 | 0.00 | 0.00 | 3.51 |
2370 | 2641 | 6.358974 | AATGCAAAAACCTACCATTAGCTT | 57.641 | 33.333 | 0.00 | 0.00 | 0.00 | 3.74 |
2371 | 2642 | 7.341769 | TCATAATGCAAAAACCTACCATTAGCT | 59.658 | 33.333 | 0.00 | 0.00 | 33.46 | 3.32 |
2372 | 2643 | 7.435192 | GTCATAATGCAAAAACCTACCATTAGC | 59.565 | 37.037 | 0.00 | 0.00 | 33.46 | 3.09 |
2373 | 2644 | 8.686334 | AGTCATAATGCAAAAACCTACCATTAG | 58.314 | 33.333 | 0.00 | 0.00 | 33.46 | 1.73 |
2374 | 2645 | 8.588290 | AGTCATAATGCAAAAACCTACCATTA | 57.412 | 30.769 | 0.00 | 0.00 | 34.18 | 1.90 |
2375 | 2646 | 7.480760 | AGTCATAATGCAAAAACCTACCATT | 57.519 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2376 | 2647 | 7.834181 | AGTAGTCATAATGCAAAAACCTACCAT | 59.166 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2377 | 2648 | 7.172342 | AGTAGTCATAATGCAAAAACCTACCA | 58.828 | 34.615 | 0.00 | 0.00 | 0.00 | 3.25 |
2378 | 2649 | 7.625828 | AGTAGTCATAATGCAAAAACCTACC | 57.374 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2379 | 2650 | 8.947115 | AGAAGTAGTCATAATGCAAAAACCTAC | 58.053 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2380 | 2651 | 9.162764 | GAGAAGTAGTCATAATGCAAAAACCTA | 57.837 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
2381 | 2652 | 7.885399 | AGAGAAGTAGTCATAATGCAAAAACCT | 59.115 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
2382 | 2653 | 8.045176 | AGAGAAGTAGTCATAATGCAAAAACC | 57.955 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
2383 | 2654 | 9.548208 | GAAGAGAAGTAGTCATAATGCAAAAAC | 57.452 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2384 | 2655 | 8.730680 | GGAAGAGAAGTAGTCATAATGCAAAAA | 58.269 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2385 | 2656 | 7.882791 | TGGAAGAGAAGTAGTCATAATGCAAAA | 59.117 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
2386 | 2657 | 7.394016 | TGGAAGAGAAGTAGTCATAATGCAAA | 58.606 | 34.615 | 0.00 | 0.00 | 0.00 | 3.68 |
2387 | 2658 | 6.946340 | TGGAAGAGAAGTAGTCATAATGCAA | 58.054 | 36.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2388 | 2659 | 6.381133 | TCTGGAAGAGAAGTAGTCATAATGCA | 59.619 | 38.462 | 0.00 | 0.00 | 38.67 | 3.96 |
2389 | 2660 | 6.810911 | TCTGGAAGAGAAGTAGTCATAATGC | 58.189 | 40.000 | 0.00 | 0.00 | 38.67 | 3.56 |
2408 | 2679 | 2.576191 | CAAGGTACCCTTCCATTCTGGA | 59.424 | 50.000 | 8.74 | 0.00 | 46.61 | 3.86 |
2409 | 2680 | 2.308866 | ACAAGGTACCCTTCCATTCTGG | 59.691 | 50.000 | 8.74 | 0.00 | 42.67 | 3.86 |
2410 | 2681 | 3.721087 | ACAAGGTACCCTTCCATTCTG | 57.279 | 47.619 | 8.74 | 0.00 | 42.67 | 3.02 |
2411 | 2682 | 3.655777 | TGAACAAGGTACCCTTCCATTCT | 59.344 | 43.478 | 8.74 | 0.00 | 42.67 | 2.40 |
2513 | 2909 | 9.706691 | TCTCCTTCTGTACACTTATTTTTAGTG | 57.293 | 33.333 | 0.00 | 0.00 | 46.56 | 2.74 |
2528 | 2924 | 7.836685 | AGACATTATCTCTGTTCTCCTTCTGTA | 59.163 | 37.037 | 0.00 | 0.00 | 28.16 | 2.74 |
2532 | 2928 | 7.106439 | TCAGACATTATCTCTGTTCTCCTTC | 57.894 | 40.000 | 0.00 | 0.00 | 37.12 | 3.46 |
2535 | 2931 | 8.729805 | ATTTTCAGACATTATCTCTGTTCTCC | 57.270 | 34.615 | 0.00 | 0.00 | 37.12 | 3.71 |
2572 | 2988 | 2.751259 | ACAGGTGCTAAGCATGACAATG | 59.249 | 45.455 | 0.00 | 0.00 | 41.91 | 2.82 |
2573 | 2989 | 3.077484 | ACAGGTGCTAAGCATGACAAT | 57.923 | 42.857 | 0.00 | 0.00 | 41.91 | 2.71 |
2574 | 2990 | 2.566833 | ACAGGTGCTAAGCATGACAA | 57.433 | 45.000 | 0.00 | 0.00 | 41.91 | 3.18 |
2575 | 2991 | 3.055167 | ACATACAGGTGCTAAGCATGACA | 60.055 | 43.478 | 0.00 | 0.00 | 41.91 | 3.58 |
2578 | 2994 | 4.970662 | AAACATACAGGTGCTAAGCATG | 57.029 | 40.909 | 0.00 | 0.00 | 41.91 | 4.06 |
2579 | 2995 | 5.009631 | TGAAAACATACAGGTGCTAAGCAT | 58.990 | 37.500 | 0.00 | 0.00 | 41.91 | 3.79 |
2580 | 2996 | 4.393834 | TGAAAACATACAGGTGCTAAGCA | 58.606 | 39.130 | 0.00 | 0.00 | 35.60 | 3.91 |
2581 | 2997 | 5.371115 | TTGAAAACATACAGGTGCTAAGC | 57.629 | 39.130 | 0.00 | 0.00 | 0.00 | 3.09 |
2582 | 2998 | 6.071952 | ACCATTGAAAACATACAGGTGCTAAG | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 2.18 |
2590 | 3006 | 9.559958 | GATAACTGAACCATTGAAAACATACAG | 57.440 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2766 | 3182 | 7.502895 | GTCTTCAGATACATAACTCCCTCACTA | 59.497 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
3061 | 3477 | 3.759618 | ACTACAACAGTGAGCTCCTACTC | 59.240 | 47.826 | 12.15 | 0.00 | 35.62 | 2.59 |
3078 | 3494 | 2.729194 | ACCAACAAGGCAACAACTACA | 58.271 | 42.857 | 0.00 | 0.00 | 43.14 | 2.74 |
3096 | 3640 | 4.864704 | ATACAAACACCATGGTCAAACC | 57.135 | 40.909 | 16.53 | 0.00 | 39.22 | 3.27 |
3097 | 3641 | 4.447389 | GCAATACAAACACCATGGTCAAAC | 59.553 | 41.667 | 16.53 | 0.00 | 0.00 | 2.93 |
3098 | 3642 | 4.343526 | AGCAATACAAACACCATGGTCAAA | 59.656 | 37.500 | 16.53 | 0.00 | 0.00 | 2.69 |
3099 | 3643 | 3.894427 | AGCAATACAAACACCATGGTCAA | 59.106 | 39.130 | 16.53 | 0.00 | 0.00 | 3.18 |
3100 | 3644 | 3.255395 | CAGCAATACAAACACCATGGTCA | 59.745 | 43.478 | 16.53 | 0.00 | 0.00 | 4.02 |
3101 | 3645 | 3.255642 | ACAGCAATACAAACACCATGGTC | 59.744 | 43.478 | 16.53 | 0.00 | 0.00 | 4.02 |
3102 | 3646 | 3.230134 | ACAGCAATACAAACACCATGGT | 58.770 | 40.909 | 13.00 | 13.00 | 0.00 | 3.55 |
3103 | 3647 | 3.367292 | GGACAGCAATACAAACACCATGG | 60.367 | 47.826 | 11.19 | 11.19 | 0.00 | 3.66 |
3104 | 3648 | 3.507233 | AGGACAGCAATACAAACACCATG | 59.493 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
3105 | 3649 | 3.507233 | CAGGACAGCAATACAAACACCAT | 59.493 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
3106 | 3650 | 2.884012 | CAGGACAGCAATACAAACACCA | 59.116 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
3107 | 3651 | 2.351738 | GCAGGACAGCAATACAAACACC | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3108 | 3652 | 2.554032 | AGCAGGACAGCAATACAAACAC | 59.446 | 45.455 | 0.00 | 0.00 | 36.85 | 3.32 |
3109 | 3653 | 2.553602 | CAGCAGGACAGCAATACAAACA | 59.446 | 45.455 | 0.00 | 0.00 | 36.85 | 2.83 |
3110 | 3654 | 2.554032 | ACAGCAGGACAGCAATACAAAC | 59.446 | 45.455 | 0.00 | 0.00 | 36.85 | 2.93 |
3111 | 3655 | 2.813754 | GACAGCAGGACAGCAATACAAA | 59.186 | 45.455 | 0.00 | 0.00 | 36.85 | 2.83 |
3112 | 3656 | 2.426522 | GACAGCAGGACAGCAATACAA | 58.573 | 47.619 | 0.00 | 0.00 | 36.85 | 2.41 |
3113 | 3657 | 1.339055 | GGACAGCAGGACAGCAATACA | 60.339 | 52.381 | 0.00 | 0.00 | 36.85 | 2.29 |
3114 | 3658 | 1.339055 | TGGACAGCAGGACAGCAATAC | 60.339 | 52.381 | 0.00 | 0.00 | 36.85 | 1.89 |
3115 | 3659 | 0.983467 | TGGACAGCAGGACAGCAATA | 59.017 | 50.000 | 0.00 | 0.00 | 36.85 | 1.90 |
3116 | 3660 | 0.330604 | ATGGACAGCAGGACAGCAAT | 59.669 | 50.000 | 0.00 | 0.00 | 36.85 | 3.56 |
3117 | 3661 | 0.111061 | AATGGACAGCAGGACAGCAA | 59.889 | 50.000 | 0.00 | 0.00 | 36.85 | 3.91 |
3118 | 3662 | 0.607217 | CAATGGACAGCAGGACAGCA | 60.607 | 55.000 | 0.00 | 0.00 | 36.85 | 4.41 |
3119 | 3663 | 1.310933 | CCAATGGACAGCAGGACAGC | 61.311 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3120 | 3664 | 0.325933 | TCCAATGGACAGCAGGACAG | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3121 | 3665 | 0.325933 | CTCCAATGGACAGCAGGACA | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3122 | 3666 | 0.615331 | TCTCCAATGGACAGCAGGAC | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3123 | 3667 | 0.907486 | CTCTCCAATGGACAGCAGGA | 59.093 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3124 | 3668 | 0.747283 | GCTCTCCAATGGACAGCAGG | 60.747 | 60.000 | 22.02 | 1.25 | 42.12 | 4.85 |
3125 | 3669 | 0.035725 | TGCTCTCCAATGGACAGCAG | 60.036 | 55.000 | 24.99 | 8.03 | 45.97 | 4.24 |
3196 | 4031 | 1.473258 | TTCCATATGGCAGGCACAAC | 58.527 | 50.000 | 17.58 | 0.00 | 34.44 | 3.32 |
3707 | 4627 | 1.218316 | GGTAGCAAGGTCCCTCACG | 59.782 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
3767 | 4687 | 3.064545 | CCTTGAGCTTCGATTTCCATGTC | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
4141 | 5079 | 6.623549 | GCACTCTTGCTAAATATGTTCTGCAA | 60.624 | 38.462 | 11.91 | 11.91 | 46.17 | 4.08 |
4188 | 5126 | 4.774200 | GGAATATAGGCCATTTCCTTGCAT | 59.226 | 41.667 | 5.01 | 0.00 | 37.66 | 3.96 |
4438 | 5655 | 4.319766 | CCATACTAAATTCCGCATGACAGC | 60.320 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
4447 | 5664 | 5.811399 | TCAAGTTGCCATACTAAATTCCG | 57.189 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
4567 | 6488 | 4.984161 | CAGCAGGGAAAAACAAGTAATGTG | 59.016 | 41.667 | 0.00 | 0.00 | 42.99 | 3.21 |
4592 | 6513 | 4.979943 | ACAACACATGACAACACATTCA | 57.020 | 36.364 | 0.00 | 0.00 | 0.00 | 2.57 |
4623 | 6554 | 5.359576 | AGGAATTGCACTTGTTGAAAGTACA | 59.640 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4774 | 6708 | 3.689161 | GCATAACAATGGTGCAGTCAGTA | 59.311 | 43.478 | 0.00 | 0.00 | 38.68 | 2.74 |
4805 | 6739 | 6.507900 | TGCAAATTGATCGAACCAAAGTTAA | 58.492 | 32.000 | 0.00 | 0.00 | 35.94 | 2.01 |
4822 | 6756 | 3.494924 | GCCTTTCCCTTCAACTGCAAATT | 60.495 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
4953 | 6887 | 3.677700 | GCACGATGACCAACAGTATACCA | 60.678 | 47.826 | 0.00 | 0.00 | 0.00 | 3.25 |
5013 | 6947 | 1.956477 | TCTTTGGCCAAGCTTGAGAAC | 59.044 | 47.619 | 28.05 | 14.12 | 31.70 | 3.01 |
5095 | 7029 | 2.102420 | CCACCAATACATCAGTAGCCGA | 59.898 | 50.000 | 0.00 | 0.00 | 32.86 | 5.54 |
5197 | 7131 | 2.868964 | AACCAGTATCCTCCTGCCTA | 57.131 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
5209 | 7143 | 4.325028 | TTTCTGCTCAACGTAACCAGTA | 57.675 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
5261 | 7201 | 3.133901 | TGCTCACTGTTACAAACTCTGGA | 59.866 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
5263 | 7203 | 3.059325 | GCTGCTCACTGTTACAAACTCTG | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
5264 | 7204 | 3.134458 | GCTGCTCACTGTTACAAACTCT | 58.866 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
5265 | 7205 | 2.872245 | TGCTGCTCACTGTTACAAACTC | 59.128 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
5312 | 7254 | 4.211164 | GGCCAGTTGTCAAAATTTGCTTAC | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
5339 | 7281 | 4.715130 | ACCGGCTCACCAGGCCTA | 62.715 | 66.667 | 3.98 | 0.00 | 46.73 | 3.93 |
5389 | 7332 | 6.142139 | TGCGAGAACACAATAAAAATCTGTG | 58.858 | 36.000 | 0.08 | 0.08 | 44.81 | 3.66 |
5390 | 7333 | 6.312399 | TGCGAGAACACAATAAAAATCTGT | 57.688 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
5391 | 7334 | 7.379529 | ACTTTGCGAGAACACAATAAAAATCTG | 59.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
5392 | 7335 | 7.425606 | ACTTTGCGAGAACACAATAAAAATCT | 58.574 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
5393 | 7336 | 7.623268 | ACTTTGCGAGAACACAATAAAAATC | 57.377 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5394 | 7337 | 8.419076 | AAACTTTGCGAGAACACAATAAAAAT | 57.581 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
5396 | 7339 | 7.219917 | CAGAAACTTTGCGAGAACACAATAAAA | 59.780 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
5397 | 7340 | 6.690957 | CAGAAACTTTGCGAGAACACAATAAA | 59.309 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
5398 | 7341 | 6.183360 | ACAGAAACTTTGCGAGAACACAATAA | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
5399 | 7342 | 5.295787 | ACAGAAACTTTGCGAGAACACAATA | 59.704 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
5400 | 7343 | 4.096382 | ACAGAAACTTTGCGAGAACACAAT | 59.904 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
5401 | 7344 | 3.438781 | ACAGAAACTTTGCGAGAACACAA | 59.561 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
5402 | 7345 | 3.006940 | ACAGAAACTTTGCGAGAACACA | 58.993 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
5403 | 7346 | 3.063452 | TGACAGAAACTTTGCGAGAACAC | 59.937 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
5404 | 7347 | 3.063452 | GTGACAGAAACTTTGCGAGAACA | 59.937 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
5405 | 7348 | 3.063452 | TGTGACAGAAACTTTGCGAGAAC | 59.937 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
5406 | 7349 | 3.063452 | GTGTGACAGAAACTTTGCGAGAA | 59.937 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
5407 | 7350 | 2.607635 | GTGTGACAGAAACTTTGCGAGA | 59.392 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
5408 | 7351 | 2.597505 | CGTGTGACAGAAACTTTGCGAG | 60.598 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
5409 | 7352 | 1.326245 | CGTGTGACAGAAACTTTGCGA | 59.674 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
5410 | 7353 | 1.594518 | CCGTGTGACAGAAACTTTGCG | 60.595 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
5416 | 7359 | 0.531974 | TGAGCCCGTGTGACAGAAAC | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
5421 | 7364 | 1.069090 | GTTCTGAGCCCGTGTGACA | 59.931 | 57.895 | 0.00 | 0.00 | 0.00 | 3.58 |
5455 | 7406 | 1.648467 | GCGGAAATGAGACCAGGCAC | 61.648 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
5467 | 7418 | 2.094545 | GCAGTTCAATTCCAGCGGAAAT | 60.095 | 45.455 | 12.83 | 3.57 | 45.41 | 2.17 |
5471 | 7422 | 1.398390 | GTAGCAGTTCAATTCCAGCGG | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
5481 | 7432 | 4.793201 | TGCCTATAGAGAGTAGCAGTTCA | 58.207 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
5495 | 7446 | 2.627515 | TTGCTTGCTCCTGCCTATAG | 57.372 | 50.000 | 0.00 | 0.00 | 38.71 | 1.31 |
5501 | 7452 | 2.094390 | TGAATTCATTGCTTGCTCCTGC | 60.094 | 45.455 | 3.38 | 0.00 | 40.20 | 4.85 |
5622 | 7578 | 2.358898 | ACACAAAGTGTCAACATGAGGC | 59.641 | 45.455 | 0.00 | 0.00 | 43.92 | 4.70 |
5732 | 7688 | 4.615912 | CGACCTAGAAATGGGCAACAAAAG | 60.616 | 45.833 | 0.00 | 0.00 | 39.74 | 2.27 |
5756 | 7712 | 2.366301 | TTGGGCCGCCCTATGAGA | 60.366 | 61.111 | 28.97 | 4.75 | 45.70 | 3.27 |
5823 | 7779 | 6.183360 | GCAATCTCGTCCTCCTATATGTAGAG | 60.183 | 46.154 | 0.00 | 0.00 | 0.00 | 2.43 |
5824 | 7780 | 5.648526 | GCAATCTCGTCCTCCTATATGTAGA | 59.351 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5825 | 7781 | 5.416013 | TGCAATCTCGTCCTCCTATATGTAG | 59.584 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5826 | 7782 | 5.321927 | TGCAATCTCGTCCTCCTATATGTA | 58.678 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
5829 | 7785 | 4.774726 | ACATGCAATCTCGTCCTCCTATAT | 59.225 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 |
5841 | 7797 | 0.999406 | ACGCACGTACATGCAATCTC | 59.001 | 50.000 | 15.00 | 0.00 | 46.47 | 2.75 |
5958 | 7914 | 1.037493 | AGCCACGCATATAGACCGAA | 58.963 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.