Multiple sequence alignment - TraesCS3D01G216700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G216700 chr3D 100.000 3470 0 0 1 3470 294047395 294050864 0.000000e+00 6408
1 TraesCS3D01G216700 chr3D 92.364 275 20 1 1261 1535 31092519 31092792 1.170000e-104 390
2 TraesCS3D01G216700 chr3D 93.103 87 5 1 697 782 294041630 294041716 3.640000e-25 126
3 TraesCS3D01G216700 chr3A 92.188 2829 78 51 719 3470 388801760 388804522 0.000000e+00 3868
4 TraesCS3D01G216700 chr3A 74.419 473 98 19 1369 1830 30544407 30544867 7.650000e-42 182
5 TraesCS3D01G216700 chr3A 92.727 110 5 1 4 113 388801545 388801651 4.640000e-34 156
6 TraesCS3D01G216700 chr3A 88.889 108 11 1 582 689 733486463 733486569 7.810000e-27 132
7 TraesCS3D01G216700 chr3B 94.299 1947 69 22 707 2633 387886588 387888512 0.000000e+00 2942
8 TraesCS3D01G216700 chr3B 92.188 512 16 10 2973 3469 387889518 387890020 0.000000e+00 702
9 TraesCS3D01G216700 chr3B 86.376 367 16 12 2630 2971 387888883 387889240 1.520000e-98 370
10 TraesCS3D01G216700 chr3B 83.108 296 46 2 292 583 703118409 703118704 2.050000e-67 267
11 TraesCS3D01G216700 chr3B 79.208 404 67 10 292 684 827401561 827401164 7.380000e-67 265
12 TraesCS3D01G216700 chr3B 79.208 404 67 10 292 684 830789240 830789637 7.380000e-67 265
13 TraesCS3D01G216700 chr3B 73.895 475 106 18 1369 1835 36543826 36543362 1.280000e-39 174
14 TraesCS3D01G216700 chr3B 83.206 131 17 3 141 268 387838826 387838954 7.870000e-22 115
15 TraesCS3D01G216700 chr1D 85.856 403 45 7 292 684 6522782 6522382 5.360000e-113 418
16 TraesCS3D01G216700 chr5D 84.804 408 49 8 292 689 13784198 13784602 6.980000e-107 398
17 TraesCS3D01G216700 chr5D 90.173 173 11 3 424 590 445106488 445106660 1.620000e-53 220
18 TraesCS3D01G216700 chr7B 84.553 369 46 7 294 653 467988942 467989308 4.260000e-94 355
19 TraesCS3D01G216700 chr7B 87.850 107 10 2 580 684 679501170 679501065 4.700000e-24 122
20 TraesCS3D01G216700 chr6D 86.207 319 40 3 292 606 448381410 448381728 3.320000e-90 342
21 TraesCS3D01G216700 chr4A 85.809 303 32 4 292 583 274744758 274745060 9.350000e-81 311
22 TraesCS3D01G216700 chr4A 90.909 88 8 0 1244 1331 541017812 541017899 6.080000e-23 119
23 TraesCS3D01G216700 chr2D 79.419 413 62 15 292 689 621264280 621263876 1.590000e-68 270
24 TraesCS3D01G216700 chr2D 91.667 168 9 2 424 586 420278321 420278154 9.690000e-56 228
25 TraesCS3D01G216700 chr2A 92.265 181 14 0 1243 1423 211481983 211481803 1.240000e-64 257
26 TraesCS3D01G216700 chr1B 91.765 170 9 2 423 587 65568945 65568776 7.490000e-57 231
27 TraesCS3D01G216700 chr1B 83.761 117 15 4 570 684 647833494 647833608 1.320000e-19 108
28 TraesCS3D01G216700 chr4B 92.715 151 11 0 288 438 611495452 611495602 5.830000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G216700 chr3D 294047395 294050864 3469 False 6408 6408 100.000000 1 3470 1 chr3D.!!$F3 3469
1 TraesCS3D01G216700 chr3A 388801545 388804522 2977 False 2012 3868 92.457500 4 3470 2 chr3A.!!$F3 3466
2 TraesCS3D01G216700 chr3B 387886588 387890020 3432 False 1338 2942 90.954333 707 3469 3 chr3B.!!$F4 2762


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.035458 CCACAGTCAGGTCTTCCCAC 59.965 60.0 0.0 0.0 34.66 4.61 F
966 999 0.036952 CCACTCCAGTACAGCACCAG 60.037 60.0 0.0 0.0 0.00 4.00 F
967 1000 0.671781 CACTCCAGTACAGCACCAGC 60.672 60.0 0.0 0.0 42.56 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 1440 0.331954 TGAAGTACTCTCCGCTCCCT 59.668 55.000 0.00 0.0 0.00 4.20 R
2409 2454 1.666872 GTCGAACACCACCCGGAAG 60.667 63.158 0.73 0.0 35.59 3.46 R
2623 2680 1.734163 AACAAACCGCCTTATCCTCG 58.266 50.000 0.00 0.0 0.00 4.63 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.753272 ACACGCAGTAGCAAGAAAATGAT 59.247 39.130 0.00 0.00 41.61 2.45
36 37 4.935205 ACACGCAGTAGCAAGAAAATGATA 59.065 37.500 0.00 0.00 41.61 2.15
37 38 5.163854 ACACGCAGTAGCAAGAAAATGATAC 60.164 40.000 0.00 0.00 41.61 2.24
78 79 3.443925 GGCAGGGGAAAAGCTCGC 61.444 66.667 0.00 0.00 36.26 5.03
113 114 1.080569 CAACAATGGCTGGTTCCGC 60.081 57.895 0.00 0.00 0.00 5.54
120 121 3.741476 GCTGGTTCCGCCTTGCTG 61.741 66.667 0.00 0.00 38.35 4.41
121 122 2.032528 CTGGTTCCGCCTTGCTGA 59.967 61.111 0.00 0.00 38.35 4.26
122 123 1.377725 CTGGTTCCGCCTTGCTGAT 60.378 57.895 0.00 0.00 38.35 2.90
123 124 1.651240 CTGGTTCCGCCTTGCTGATG 61.651 60.000 0.00 0.00 38.35 3.07
124 125 2.409870 GGTTCCGCCTTGCTGATGG 61.410 63.158 0.00 0.00 0.00 3.51
125 126 1.675641 GTTCCGCCTTGCTGATGGT 60.676 57.895 0.00 0.00 0.00 3.55
126 127 1.675310 TTCCGCCTTGCTGATGGTG 60.675 57.895 0.00 0.00 0.00 4.17
127 128 2.360350 CCGCCTTGCTGATGGTGT 60.360 61.111 0.00 0.00 32.37 4.16
128 129 2.693762 CCGCCTTGCTGATGGTGTG 61.694 63.158 0.00 0.00 32.37 3.82
129 130 2.570181 GCCTTGCTGATGGTGTGC 59.430 61.111 0.00 0.00 0.00 4.57
130 131 2.998279 GCCTTGCTGATGGTGTGCC 61.998 63.158 0.00 0.00 0.00 5.01
131 132 2.345760 CCTTGCTGATGGTGTGCCC 61.346 63.158 0.00 0.00 0.00 5.36
149 150 3.525268 CCCAATACAGGCACAAAATCC 57.475 47.619 0.00 0.00 0.00 3.01
150 151 2.159254 CCCAATACAGGCACAAAATCCG 60.159 50.000 0.00 0.00 0.00 4.18
151 152 2.529151 CAATACAGGCACAAAATCCGC 58.471 47.619 0.00 0.00 0.00 5.54
152 153 0.732571 ATACAGGCACAAAATCCGCG 59.267 50.000 0.00 0.00 0.00 6.46
153 154 0.604243 TACAGGCACAAAATCCGCGT 60.604 50.000 4.92 0.00 0.00 6.01
154 155 1.154225 CAGGCACAAAATCCGCGTC 60.154 57.895 4.92 0.00 0.00 5.19
155 156 1.599518 AGGCACAAAATCCGCGTCA 60.600 52.632 4.92 0.00 0.00 4.35
156 157 1.154225 GGCACAAAATCCGCGTCAG 60.154 57.895 4.92 0.00 0.00 3.51
177 178 0.387622 TTGCGCATTTGCTCTTGCTC 60.388 50.000 12.75 0.00 40.48 4.26
199 200 3.869272 CTGCAAGCCGGATCACGC 61.869 66.667 5.05 3.16 42.52 5.34
200 201 4.393155 TGCAAGCCGGATCACGCT 62.393 61.111 5.05 0.12 42.52 5.07
201 202 3.567797 GCAAGCCGGATCACGCTC 61.568 66.667 5.05 0.00 42.52 5.03
202 203 2.892425 CAAGCCGGATCACGCTCC 60.892 66.667 5.05 0.00 42.52 4.70
203 204 3.390521 AAGCCGGATCACGCTCCA 61.391 61.111 5.05 0.00 42.52 3.86
204 205 3.665675 AAGCCGGATCACGCTCCAC 62.666 63.158 5.05 0.00 42.52 4.02
206 207 4.873129 CCGGATCACGCTCCACCG 62.873 72.222 0.00 0.00 42.52 4.94
230 231 2.957484 TACGCCGACACCACACACAC 62.957 60.000 0.00 0.00 0.00 3.82
231 232 2.512745 GCCGACACCACACACACA 60.513 61.111 0.00 0.00 0.00 3.72
247 248 0.179084 CACAAGACGTGTCCACACCT 60.179 55.000 0.00 0.00 43.66 4.00
267 268 0.322975 CCAGGTCTTCCCACAGTCAG 59.677 60.000 0.00 0.00 34.66 3.51
268 269 0.322975 CAGGTCTTCCCACAGTCAGG 59.677 60.000 0.00 0.00 34.66 3.86
270 271 0.321996 GGTCTTCCCACAGTCAGGTC 59.678 60.000 0.00 0.00 0.00 3.85
272 273 1.694696 GTCTTCCCACAGTCAGGTCTT 59.305 52.381 0.00 0.00 0.00 3.01
273 274 1.971357 TCTTCCCACAGTCAGGTCTTC 59.029 52.381 0.00 0.00 0.00 2.87
275 276 0.836400 TCCCACAGTCAGGTCTTCCC 60.836 60.000 0.00 0.00 0.00 3.97
276 277 1.127567 CCCACAGTCAGGTCTTCCCA 61.128 60.000 0.00 0.00 34.66 4.37
277 278 0.035458 CCACAGTCAGGTCTTCCCAC 59.965 60.000 0.00 0.00 34.66 4.61
278 279 0.758734 CACAGTCAGGTCTTCCCACA 59.241 55.000 0.00 0.00 34.66 4.17
279 280 1.051812 ACAGTCAGGTCTTCCCACAG 58.948 55.000 0.00 0.00 34.66 3.66
280 281 1.051812 CAGTCAGGTCTTCCCACAGT 58.948 55.000 0.00 0.00 34.66 3.55
281 282 1.001406 CAGTCAGGTCTTCCCACAGTC 59.999 57.143 0.00 0.00 34.66 3.51
282 283 1.048601 GTCAGGTCTTCCCACAGTCA 58.951 55.000 0.00 0.00 34.66 3.41
283 284 1.416401 GTCAGGTCTTCCCACAGTCAA 59.584 52.381 0.00 0.00 34.66 3.18
284 285 2.123589 TCAGGTCTTCCCACAGTCAAA 58.876 47.619 0.00 0.00 34.66 2.69
285 286 2.711009 TCAGGTCTTCCCACAGTCAAAT 59.289 45.455 0.00 0.00 34.66 2.32
286 287 3.077359 CAGGTCTTCCCACAGTCAAATC 58.923 50.000 0.00 0.00 34.66 2.17
287 288 2.982488 AGGTCTTCCCACAGTCAAATCT 59.018 45.455 0.00 0.00 34.66 2.40
288 289 3.077359 GGTCTTCCCACAGTCAAATCTG 58.923 50.000 0.00 0.00 40.80 2.90
290 291 3.748568 GTCTTCCCACAGTCAAATCTGTC 59.251 47.826 0.00 0.00 45.37 3.51
291 292 3.390967 TCTTCCCACAGTCAAATCTGTCA 59.609 43.478 0.00 0.00 45.37 3.58
292 293 3.407424 TCCCACAGTCAAATCTGTCAG 57.593 47.619 0.00 0.00 45.37 3.51
293 294 2.038952 TCCCACAGTCAAATCTGTCAGG 59.961 50.000 0.00 0.00 45.37 3.86
294 295 1.808945 CCACAGTCAAATCTGTCAGGC 59.191 52.381 0.00 0.00 45.37 4.85
295 296 2.551721 CCACAGTCAAATCTGTCAGGCT 60.552 50.000 0.00 0.00 45.37 4.58
296 297 2.483106 CACAGTCAAATCTGTCAGGCTG 59.517 50.000 8.58 8.58 45.37 4.85
297 298 2.082231 CAGTCAAATCTGTCAGGCTGG 58.918 52.381 15.73 0.00 0.00 4.85
298 299 1.701847 AGTCAAATCTGTCAGGCTGGT 59.298 47.619 15.73 0.00 0.00 4.00
299 300 2.079925 GTCAAATCTGTCAGGCTGGTC 58.920 52.381 15.73 9.03 0.00 4.02
300 301 1.699083 TCAAATCTGTCAGGCTGGTCA 59.301 47.619 15.73 13.10 0.00 4.02
301 302 2.306805 TCAAATCTGTCAGGCTGGTCAT 59.693 45.455 15.73 0.00 0.00 3.06
302 303 3.519107 TCAAATCTGTCAGGCTGGTCATA 59.481 43.478 15.73 7.76 0.00 2.15
303 304 3.834489 AATCTGTCAGGCTGGTCATAG 57.166 47.619 15.73 3.34 0.00 2.23
304 305 2.238084 TCTGTCAGGCTGGTCATAGT 57.762 50.000 15.73 0.00 0.00 2.12
305 306 1.827344 TCTGTCAGGCTGGTCATAGTG 59.173 52.381 15.73 3.46 0.00 2.74
306 307 0.904649 TGTCAGGCTGGTCATAGTGG 59.095 55.000 15.73 0.00 0.00 4.00
307 308 1.195115 GTCAGGCTGGTCATAGTGGA 58.805 55.000 15.73 0.00 0.00 4.02
308 309 1.555075 GTCAGGCTGGTCATAGTGGAA 59.445 52.381 15.73 0.00 0.00 3.53
309 310 2.027192 GTCAGGCTGGTCATAGTGGAAA 60.027 50.000 15.73 0.00 0.00 3.13
310 311 2.237143 TCAGGCTGGTCATAGTGGAAAG 59.763 50.000 15.73 0.00 0.00 2.62
311 312 2.026822 CAGGCTGGTCATAGTGGAAAGT 60.027 50.000 6.61 0.00 0.00 2.66
312 313 3.197766 CAGGCTGGTCATAGTGGAAAGTA 59.802 47.826 6.61 0.00 0.00 2.24
313 314 3.844211 AGGCTGGTCATAGTGGAAAGTAA 59.156 43.478 0.00 0.00 0.00 2.24
314 315 3.939592 GGCTGGTCATAGTGGAAAGTAAC 59.060 47.826 0.00 0.00 0.00 2.50
315 316 4.564821 GGCTGGTCATAGTGGAAAGTAACA 60.565 45.833 0.00 0.00 0.00 2.41
316 317 5.186198 GCTGGTCATAGTGGAAAGTAACAT 58.814 41.667 0.00 0.00 0.00 2.71
317 318 6.346096 GCTGGTCATAGTGGAAAGTAACATA 58.654 40.000 0.00 0.00 0.00 2.29
318 319 6.992715 GCTGGTCATAGTGGAAAGTAACATAT 59.007 38.462 0.00 0.00 0.00 1.78
319 320 8.148351 GCTGGTCATAGTGGAAAGTAACATATA 58.852 37.037 0.00 0.00 0.00 0.86
320 321 9.477484 CTGGTCATAGTGGAAAGTAACATATAC 57.523 37.037 0.00 0.00 0.00 1.47
321 322 9.209048 TGGTCATAGTGGAAAGTAACATATACT 57.791 33.333 0.00 0.00 0.00 2.12
361 362 9.170584 CGATGCTAGTGTATAATATTACATCCG 57.829 37.037 0.00 0.00 34.76 4.18
368 369 8.799367 AGTGTATAATATTACATCCGTAGTGCA 58.201 33.333 0.00 0.00 34.76 4.57
369 370 9.582431 GTGTATAATATTACATCCGTAGTGCAT 57.418 33.333 0.00 0.00 34.76 3.96
376 377 6.887626 TTACATCCGTAGTGCATAGTATCA 57.112 37.500 0.00 0.00 0.00 2.15
377 378 5.984695 ACATCCGTAGTGCATAGTATCAT 57.015 39.130 0.00 0.00 0.00 2.45
378 379 8.570068 TTACATCCGTAGTGCATAGTATCATA 57.430 34.615 0.00 0.00 0.00 2.15
379 380 7.462571 ACATCCGTAGTGCATAGTATCATAA 57.537 36.000 0.00 0.00 0.00 1.90
380 381 7.892609 ACATCCGTAGTGCATAGTATCATAAA 58.107 34.615 0.00 0.00 0.00 1.40
381 382 8.364894 ACATCCGTAGTGCATAGTATCATAAAA 58.635 33.333 0.00 0.00 0.00 1.52
382 383 9.371136 CATCCGTAGTGCATAGTATCATAAAAT 57.629 33.333 0.00 0.00 0.00 1.82
385 386 9.856488 CCGTAGTGCATAGTATCATAAAATAGT 57.144 33.333 0.00 0.00 0.00 2.12
409 410 9.664332 AGTATCATAGATGGTCTCATTTATTGC 57.336 33.333 0.00 0.00 30.94 3.56
410 411 9.664332 GTATCATAGATGGTCTCATTTATTGCT 57.336 33.333 0.00 0.00 30.94 3.91
413 414 9.662947 TCATAGATGGTCTCATTTATTGCTATG 57.337 33.333 0.00 0.00 34.93 2.23
414 415 6.814506 AGATGGTCTCATTTATTGCTATGC 57.185 37.500 0.00 0.00 32.98 3.14
415 416 6.301486 AGATGGTCTCATTTATTGCTATGCA 58.699 36.000 0.00 0.00 32.81 3.96
416 417 6.946583 AGATGGTCTCATTTATTGCTATGCAT 59.053 34.615 3.79 3.79 34.08 3.96
417 418 6.321848 TGGTCTCATTTATTGCTATGCATG 57.678 37.500 10.16 0.26 38.76 4.06
418 419 6.063404 TGGTCTCATTTATTGCTATGCATGA 58.937 36.000 10.16 0.00 38.76 3.07
419 420 6.016860 TGGTCTCATTTATTGCTATGCATGAC 60.017 38.462 10.16 2.96 38.76 3.06
420 421 6.016860 GGTCTCATTTATTGCTATGCATGACA 60.017 38.462 10.16 4.24 38.76 3.58
421 422 6.854892 GTCTCATTTATTGCTATGCATGACAC 59.145 38.462 10.16 0.00 38.76 3.67
422 423 6.543100 TCTCATTTATTGCTATGCATGACACA 59.457 34.615 10.16 0.00 38.76 3.72
423 424 7.229907 TCTCATTTATTGCTATGCATGACACAT 59.770 33.333 10.16 6.58 38.76 3.21
424 425 8.393671 TCATTTATTGCTATGCATGACACATA 57.606 30.769 10.16 5.74 38.76 2.29
425 426 8.291740 TCATTTATTGCTATGCATGACACATAC 58.708 33.333 10.16 0.00 38.76 2.39
426 427 7.806409 TTTATTGCTATGCATGACACATACT 57.194 32.000 10.16 0.00 38.76 2.12
427 428 5.936686 ATTGCTATGCATGACACATACTC 57.063 39.130 10.16 0.00 38.76 2.59
428 429 3.732212 TGCTATGCATGACACATACTCC 58.268 45.455 10.16 0.00 31.71 3.85
429 430 3.070018 GCTATGCATGACACATACTCCC 58.930 50.000 10.16 0.00 0.00 4.30
430 431 3.244353 GCTATGCATGACACATACTCCCT 60.244 47.826 10.16 0.00 0.00 4.20
431 432 2.988010 TGCATGACACATACTCCCTC 57.012 50.000 0.00 0.00 0.00 4.30
432 433 1.486310 TGCATGACACATACTCCCTCC 59.514 52.381 0.00 0.00 0.00 4.30
433 434 1.539065 GCATGACACATACTCCCTCCG 60.539 57.143 0.00 0.00 0.00 4.63
434 435 1.757118 CATGACACATACTCCCTCCGT 59.243 52.381 0.00 0.00 0.00 4.69
435 436 1.933021 TGACACATACTCCCTCCGTT 58.067 50.000 0.00 0.00 0.00 4.44
436 437 1.822990 TGACACATACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
437 438 1.136500 GACACATACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
438 439 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
439 440 1.553248 CACATACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
440 441 2.027561 CACATACTCCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
441 442 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
442 443 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
443 444 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
444 445 5.132144 ACATACTCCCTCCGTTCCAAAATAT 59.868 40.000 0.00 0.00 0.00 1.28
445 446 6.328148 ACATACTCCCTCCGTTCCAAAATATA 59.672 38.462 0.00 0.00 0.00 0.86
446 447 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
447 448 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
448 449 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
449 450 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
450 451 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
451 452 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
452 453 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
453 454 7.201705 CCCTCCGTTCCAAAATATAAGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
454 455 7.553044 CCTCCGTTCCAAAATATAAGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
455 456 9.595823 CTCCGTTCCAAAATATAAGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
456 457 9.595823 TCCGTTCCAAAATATAAGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
457 458 9.595823 CCGTTCCAAAATATAAGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
467 468 7.979786 ATAAGTCTTTCTAGAGATTCCACCA 57.020 36.000 0.00 0.00 0.00 4.17
468 469 6.688073 AAGTCTTTCTAGAGATTCCACCAA 57.312 37.500 0.00 0.00 0.00 3.67
469 470 6.293004 AGTCTTTCTAGAGATTCCACCAAG 57.707 41.667 0.00 0.00 0.00 3.61
470 471 5.782845 AGTCTTTCTAGAGATTCCACCAAGT 59.217 40.000 0.00 0.00 0.00 3.16
471 472 5.872070 GTCTTTCTAGAGATTCCACCAAGTG 59.128 44.000 0.00 0.00 0.00 3.16
472 473 5.780282 TCTTTCTAGAGATTCCACCAAGTGA 59.220 40.000 0.00 0.00 35.23 3.41
473 474 5.407407 TTCTAGAGATTCCACCAAGTGAC 57.593 43.478 0.00 0.00 35.23 3.67
474 475 4.678256 TCTAGAGATTCCACCAAGTGACT 58.322 43.478 0.00 0.00 35.23 3.41
475 476 5.827756 TCTAGAGATTCCACCAAGTGACTA 58.172 41.667 0.00 0.00 35.23 2.59
476 477 4.810191 AGAGATTCCACCAAGTGACTAC 57.190 45.455 0.00 0.00 35.23 2.73
477 478 4.160329 AGAGATTCCACCAAGTGACTACA 58.840 43.478 0.00 0.00 35.23 2.74
478 479 4.780021 AGAGATTCCACCAAGTGACTACAT 59.220 41.667 0.00 0.00 35.23 2.29
479 480 5.958380 AGAGATTCCACCAAGTGACTACATA 59.042 40.000 0.00 0.00 35.23 2.29
480 481 5.978814 AGATTCCACCAAGTGACTACATAC 58.021 41.667 0.00 0.00 35.23 2.39
481 482 3.861276 TCCACCAAGTGACTACATACG 57.139 47.619 0.00 0.00 35.23 3.06
482 483 2.494471 TCCACCAAGTGACTACATACGG 59.506 50.000 0.00 0.00 35.23 4.02
483 484 2.494471 CCACCAAGTGACTACATACGGA 59.506 50.000 0.00 0.00 35.23 4.69
484 485 3.056393 CCACCAAGTGACTACATACGGAA 60.056 47.826 0.00 0.00 35.23 4.30
485 486 3.924686 CACCAAGTGACTACATACGGAAC 59.075 47.826 0.00 0.00 35.23 3.62
486 487 3.575256 ACCAAGTGACTACATACGGAACA 59.425 43.478 0.00 0.00 0.00 3.18
487 488 4.039488 ACCAAGTGACTACATACGGAACAA 59.961 41.667 0.00 0.00 0.00 2.83
488 489 4.992319 CCAAGTGACTACATACGGAACAAA 59.008 41.667 0.00 0.00 0.00 2.83
489 490 5.467399 CCAAGTGACTACATACGGAACAAAA 59.533 40.000 0.00 0.00 0.00 2.44
490 491 6.148811 CCAAGTGACTACATACGGAACAAAAT 59.851 38.462 0.00 0.00 0.00 1.82
491 492 6.721571 AGTGACTACATACGGAACAAAATG 57.278 37.500 0.00 0.00 0.00 2.32
492 493 6.460781 AGTGACTACATACGGAACAAAATGA 58.539 36.000 0.00 0.00 0.00 2.57
493 494 6.590292 AGTGACTACATACGGAACAAAATGAG 59.410 38.462 0.00 0.00 0.00 2.90
494 495 6.367969 GTGACTACATACGGAACAAAATGAGT 59.632 38.462 0.00 0.00 0.00 3.41
495 496 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
496 497 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
497 498 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
498 499 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
499 500 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
500 501 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
501 502 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
502 503 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
503 504 5.995282 ACGGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
504 505 6.073222 ACGGAACAAAATGAGTGAATCTACAC 60.073 38.462 0.00 0.00 40.60 2.90
519 520 8.969267 GTGAATCTACACTCTAAAATATGTCCG 58.031 37.037 0.00 0.00 37.73 4.79
520 521 7.652105 TGAATCTACACTCTAAAATATGTCCGC 59.348 37.037 0.00 0.00 0.00 5.54
521 522 6.459670 TCTACACTCTAAAATATGTCCGCA 57.540 37.500 0.00 0.00 0.00 5.69
522 523 7.050970 TCTACACTCTAAAATATGTCCGCAT 57.949 36.000 0.00 0.00 39.03 4.73
523 524 8.173542 TCTACACTCTAAAATATGTCCGCATA 57.826 34.615 0.00 0.00 41.31 3.14
524 525 8.080417 TCTACACTCTAAAATATGTCCGCATAC 58.920 37.037 0.00 0.00 40.05 2.39
525 526 6.578944 ACACTCTAAAATATGTCCGCATACA 58.421 36.000 0.00 0.00 40.05 2.29
526 527 7.217200 ACACTCTAAAATATGTCCGCATACAT 58.783 34.615 6.22 6.22 40.05 2.29
527 528 7.385205 ACACTCTAAAATATGTCCGCATACATC 59.615 37.037 4.30 0.00 40.05 3.06
528 529 6.874134 ACTCTAAAATATGTCCGCATACATCC 59.126 38.462 4.30 0.00 40.05 3.51
529 530 5.867174 TCTAAAATATGTCCGCATACATCCG 59.133 40.000 4.30 0.00 40.05 4.18
530 531 3.678056 AATATGTCCGCATACATCCGT 57.322 42.857 4.30 0.00 40.05 4.69
531 532 4.794278 AATATGTCCGCATACATCCGTA 57.206 40.909 4.30 0.00 40.05 4.02
532 533 5.339008 AATATGTCCGCATACATCCGTAT 57.661 39.130 4.30 0.00 40.05 3.06
549 550 9.997482 ACATCCGTATGTTGTAAATAAAATGTC 57.003 29.630 0.00 0.00 44.07 3.06
577 578 9.524106 AAAAAGACTTACATTTAAAAACGGAGG 57.476 29.630 0.00 0.00 0.00 4.30
578 579 6.812879 AGACTTACATTTAAAAACGGAGGG 57.187 37.500 0.00 0.00 0.00 4.30
579 580 6.536447 AGACTTACATTTAAAAACGGAGGGA 58.464 36.000 0.00 0.00 0.00 4.20
580 581 6.653740 AGACTTACATTTAAAAACGGAGGGAG 59.346 38.462 0.00 0.00 0.00 4.30
581 582 6.301486 ACTTACATTTAAAAACGGAGGGAGT 58.699 36.000 0.00 0.00 0.00 3.85
582 583 7.452562 ACTTACATTTAAAAACGGAGGGAGTA 58.547 34.615 0.00 0.00 0.00 2.59
583 584 7.605309 ACTTACATTTAAAAACGGAGGGAGTAG 59.395 37.037 0.00 0.00 0.00 2.57
584 585 5.872963 ACATTTAAAAACGGAGGGAGTAGT 58.127 37.500 0.00 0.00 0.00 2.73
585 586 7.008021 ACATTTAAAAACGGAGGGAGTAGTA 57.992 36.000 0.00 0.00 0.00 1.82
586 587 7.101700 ACATTTAAAAACGGAGGGAGTAGTAG 58.898 38.462 0.00 0.00 0.00 2.57
587 588 3.606595 AAAAACGGAGGGAGTAGTAGC 57.393 47.619 0.00 0.00 0.00 3.58
588 589 2.226962 AAACGGAGGGAGTAGTAGCA 57.773 50.000 0.00 0.00 0.00 3.49
589 590 2.456073 AACGGAGGGAGTAGTAGCAT 57.544 50.000 0.00 0.00 0.00 3.79
590 591 3.589951 AACGGAGGGAGTAGTAGCATA 57.410 47.619 0.00 0.00 0.00 3.14
591 592 3.589951 ACGGAGGGAGTAGTAGCATAA 57.410 47.619 0.00 0.00 0.00 1.90
592 593 3.220940 ACGGAGGGAGTAGTAGCATAAC 58.779 50.000 0.00 0.00 0.00 1.89
593 594 3.220110 CGGAGGGAGTAGTAGCATAACA 58.780 50.000 0.00 0.00 0.00 2.41
594 595 3.827302 CGGAGGGAGTAGTAGCATAACAT 59.173 47.826 0.00 0.00 0.00 2.71
595 596 4.281182 CGGAGGGAGTAGTAGCATAACATT 59.719 45.833 0.00 0.00 0.00 2.71
596 597 5.221461 CGGAGGGAGTAGTAGCATAACATTT 60.221 44.000 0.00 0.00 0.00 2.32
597 598 6.015688 CGGAGGGAGTAGTAGCATAACATTTA 60.016 42.308 0.00 0.00 0.00 1.40
598 599 7.309867 CGGAGGGAGTAGTAGCATAACATTTAT 60.310 40.741 0.00 0.00 0.00 1.40
599 600 8.376270 GGAGGGAGTAGTAGCATAACATTTATT 58.624 37.037 0.00 0.00 0.00 1.40
636 637 8.880991 TCTACCTATGTTATTATGACCCTCTC 57.119 38.462 0.00 0.00 0.00 3.20
637 638 8.679725 TCTACCTATGTTATTATGACCCTCTCT 58.320 37.037 0.00 0.00 0.00 3.10
638 639 7.784470 ACCTATGTTATTATGACCCTCTCTC 57.216 40.000 0.00 0.00 0.00 3.20
639 640 7.540183 ACCTATGTTATTATGACCCTCTCTCT 58.460 38.462 0.00 0.00 0.00 3.10
640 641 8.013667 ACCTATGTTATTATGACCCTCTCTCTT 58.986 37.037 0.00 0.00 0.00 2.85
641 642 8.527810 CCTATGTTATTATGACCCTCTCTCTTC 58.472 40.741 0.00 0.00 0.00 2.87
642 643 9.308000 CTATGTTATTATGACCCTCTCTCTTCT 57.692 37.037 0.00 0.00 0.00 2.85
643 644 7.979786 TGTTATTATGACCCTCTCTCTTCTT 57.020 36.000 0.00 0.00 0.00 2.52
644 645 8.380742 TGTTATTATGACCCTCTCTCTTCTTT 57.619 34.615 0.00 0.00 0.00 2.52
645 646 9.488762 TGTTATTATGACCCTCTCTCTTCTTTA 57.511 33.333 0.00 0.00 0.00 1.85
651 652 8.800370 ATGACCCTCTCTCTTCTTTAATTTTC 57.200 34.615 0.00 0.00 0.00 2.29
652 653 7.978925 TGACCCTCTCTCTTCTTTAATTTTCT 58.021 34.615 0.00 0.00 0.00 2.52
653 654 7.880195 TGACCCTCTCTCTTCTTTAATTTTCTG 59.120 37.037 0.00 0.00 0.00 3.02
654 655 7.750655 ACCCTCTCTCTTCTTTAATTTTCTGT 58.249 34.615 0.00 0.00 0.00 3.41
655 656 7.880713 ACCCTCTCTCTTCTTTAATTTTCTGTC 59.119 37.037 0.00 0.00 0.00 3.51
656 657 7.064016 CCCTCTCTCTTCTTTAATTTTCTGTCG 59.936 40.741 0.00 0.00 0.00 4.35
657 658 7.352719 TCTCTCTTCTTTAATTTTCTGTCGC 57.647 36.000 0.00 0.00 0.00 5.19
658 659 6.929049 TCTCTCTTCTTTAATTTTCTGTCGCA 59.071 34.615 0.00 0.00 0.00 5.10
659 660 7.604164 TCTCTCTTCTTTAATTTTCTGTCGCAT 59.396 33.333 0.00 0.00 0.00 4.73
660 661 8.771920 TCTCTTCTTTAATTTTCTGTCGCATA 57.228 30.769 0.00 0.00 0.00 3.14
661 662 9.214957 TCTCTTCTTTAATTTTCTGTCGCATAA 57.785 29.630 0.00 0.00 0.00 1.90
662 663 9.825972 CTCTTCTTTAATTTTCTGTCGCATAAA 57.174 29.630 0.00 0.00 0.00 1.40
671 672 8.880768 ATTTTCTGTCGCATAAATATATTCGC 57.119 30.769 0.00 1.87 29.78 4.70
672 673 7.414814 TTTCTGTCGCATAAATATATTCGCA 57.585 32.000 0.00 1.17 29.78 5.10
673 674 7.414814 TTCTGTCGCATAAATATATTCGCAA 57.585 32.000 0.00 0.00 29.78 4.85
674 675 7.049140 TCTGTCGCATAAATATATTCGCAAG 57.951 36.000 0.00 0.49 29.78 4.01
675 676 6.645003 TCTGTCGCATAAATATATTCGCAAGT 59.355 34.615 0.00 0.00 39.48 3.16
676 677 6.817396 TGTCGCATAAATATATTCGCAAGTC 58.183 36.000 0.00 0.00 39.48 3.01
677 678 6.128661 TGTCGCATAAATATATTCGCAAGTCC 60.129 38.462 0.00 0.00 39.48 3.85
678 679 5.350365 TCGCATAAATATATTCGCAAGTCCC 59.650 40.000 0.00 0.00 39.48 4.46
679 680 5.351465 CGCATAAATATATTCGCAAGTCCCT 59.649 40.000 0.00 0.00 39.48 4.20
680 681 6.533723 CGCATAAATATATTCGCAAGTCCCTA 59.466 38.462 0.00 0.00 39.48 3.53
681 682 7.064134 CGCATAAATATATTCGCAAGTCCCTAA 59.936 37.037 0.00 0.00 39.48 2.69
682 683 8.391106 GCATAAATATATTCGCAAGTCCCTAAG 58.609 37.037 0.00 0.00 39.48 2.18
683 684 9.436957 CATAAATATATTCGCAAGTCCCTAAGT 57.563 33.333 0.00 0.00 39.48 2.24
684 685 7.964604 AAATATATTCGCAAGTCCCTAAGTC 57.035 36.000 0.00 0.00 39.48 3.01
685 686 6.919775 ATATATTCGCAAGTCCCTAAGTCT 57.080 37.500 0.00 0.00 39.48 3.24
686 687 8.418597 AATATATTCGCAAGTCCCTAAGTCTA 57.581 34.615 0.00 0.00 39.48 2.59
687 688 6.919775 ATATTCGCAAGTCCCTAAGTCTAT 57.080 37.500 0.00 0.00 39.48 1.98
688 689 4.386867 TTCGCAAGTCCCTAAGTCTATG 57.613 45.455 0.00 0.00 39.48 2.23
689 690 2.100916 TCGCAAGTCCCTAAGTCTATGC 59.899 50.000 0.00 0.00 39.48 3.14
690 691 2.803492 CGCAAGTCCCTAAGTCTATGCC 60.803 54.545 0.00 0.00 0.00 4.40
691 692 2.485657 GCAAGTCCCTAAGTCTATGCCC 60.486 54.545 0.00 0.00 0.00 5.36
692 693 2.771943 CAAGTCCCTAAGTCTATGCCCA 59.228 50.000 0.00 0.00 0.00 5.36
693 694 2.683768 AGTCCCTAAGTCTATGCCCAG 58.316 52.381 0.00 0.00 0.00 4.45
694 695 1.070914 GTCCCTAAGTCTATGCCCAGC 59.929 57.143 0.00 0.00 0.00 4.85
695 696 0.398318 CCCTAAGTCTATGCCCAGCC 59.602 60.000 0.00 0.00 0.00 4.85
696 697 1.428869 CCTAAGTCTATGCCCAGCCT 58.571 55.000 0.00 0.00 0.00 4.58
697 698 1.346068 CCTAAGTCTATGCCCAGCCTC 59.654 57.143 0.00 0.00 0.00 4.70
698 699 2.042464 CTAAGTCTATGCCCAGCCTCA 58.958 52.381 0.00 0.00 0.00 3.86
699 700 1.289160 AAGTCTATGCCCAGCCTCAA 58.711 50.000 0.00 0.00 0.00 3.02
700 701 1.289160 AGTCTATGCCCAGCCTCAAA 58.711 50.000 0.00 0.00 0.00 2.69
701 702 1.065126 AGTCTATGCCCAGCCTCAAAC 60.065 52.381 0.00 0.00 0.00 2.93
702 703 0.991146 TCTATGCCCAGCCTCAAACA 59.009 50.000 0.00 0.00 0.00 2.83
703 704 1.354031 TCTATGCCCAGCCTCAAACAA 59.646 47.619 0.00 0.00 0.00 2.83
704 705 1.474077 CTATGCCCAGCCTCAAACAAC 59.526 52.381 0.00 0.00 0.00 3.32
705 706 0.469705 ATGCCCAGCCTCAAACAACA 60.470 50.000 0.00 0.00 0.00 3.33
804 829 2.566010 CCAACCCAAACATCCGCG 59.434 61.111 0.00 0.00 0.00 6.46
856 884 2.597578 ATCGCCCAATAATTACCCCC 57.402 50.000 0.00 0.00 0.00 5.40
936 964 0.104304 CCCTTCTTATACACGCCGCT 59.896 55.000 0.00 0.00 0.00 5.52
939 972 0.103572 TTCTTATACACGCCGCTCCC 59.896 55.000 0.00 0.00 0.00 4.30
964 997 0.247736 CTCCACTCCAGTACAGCACC 59.752 60.000 0.00 0.00 0.00 5.01
965 998 0.471022 TCCACTCCAGTACAGCACCA 60.471 55.000 0.00 0.00 0.00 4.17
966 999 0.036952 CCACTCCAGTACAGCACCAG 60.037 60.000 0.00 0.00 0.00 4.00
967 1000 0.671781 CACTCCAGTACAGCACCAGC 60.672 60.000 0.00 0.00 42.56 4.85
968 1001 1.121407 ACTCCAGTACAGCACCAGCA 61.121 55.000 0.00 0.00 45.49 4.41
969 1002 0.671781 CTCCAGTACAGCACCAGCAC 60.672 60.000 0.00 0.00 45.49 4.40
1057 1090 1.309347 CTCCTCCTCCTCCTGCTCA 59.691 63.158 0.00 0.00 0.00 4.26
1099 1132 1.534235 AAGCCCGTCCAGACTCAGT 60.534 57.895 0.00 0.00 0.00 3.41
1707 1752 2.344203 CGAGACCCTCACCTTCGCT 61.344 63.158 0.00 0.00 0.00 4.93
1944 1989 3.400054 GCCCTAGGCTCCACGGTT 61.400 66.667 2.05 0.00 46.69 4.44
2106 2151 1.977009 TGGCGTCATCGTGGACTCT 60.977 57.895 0.00 0.00 39.49 3.24
2409 2454 1.805254 CAACATACAGCAGCAGGGC 59.195 57.895 0.00 0.00 0.00 5.19
2476 2521 2.711009 CCCAGGGGCTGTTAAGATATGA 59.289 50.000 0.00 0.00 0.00 2.15
2477 2522 3.244700 CCCAGGGGCTGTTAAGATATGAG 60.245 52.174 0.00 0.00 0.00 2.90
2623 2680 3.712907 TCGGGCAGGGTAAGGTGC 61.713 66.667 0.00 0.00 39.08 5.01
2659 3090 5.290885 GGTTTGTTTGTTCAAGGCTGTAAAG 59.709 40.000 0.00 0.00 0.00 1.85
2698 3130 5.961421 ACAGGCTATCTCTCCTTTTTCTACT 59.039 40.000 0.00 0.00 0.00 2.57
2723 3167 6.597562 ACTCCATTTTACTAAACACCAGTGA 58.402 36.000 4.48 0.00 0.00 3.41
2777 3233 3.434984 GCTCTCTTTGTTGGATCACACTC 59.565 47.826 0.00 0.00 0.00 3.51
2893 3370 1.021390 ACGAAATTGCCCTCTGCTCG 61.021 55.000 0.00 0.00 42.00 5.03
2909 3386 1.939838 GCTCGGTCGTCATTTGGAAGT 60.940 52.381 0.00 0.00 0.00 3.01
2918 3395 4.921515 TCGTCATTTGGAAGTTCTCTAACG 59.078 41.667 2.25 6.33 40.73 3.18
2996 3749 0.966179 ATTGTCCAGGGCCGAAAAAC 59.034 50.000 0.00 0.00 0.00 2.43
3055 3812 2.664436 GGACGGTTTGTTCGCCTCG 61.664 63.158 0.00 0.00 0.00 4.63
3056 3813 3.291167 GACGGTTTGTTCGCCTCGC 62.291 63.158 0.00 0.00 0.00 5.03
3087 3844 1.374252 CGGAGGAGAACGTTGGTGG 60.374 63.158 5.00 0.00 0.00 4.61
3111 3873 1.678627 TGCTTTGCTTTGCCGTTCTTA 59.321 42.857 0.00 0.00 0.00 2.10
3225 3995 7.790000 TCCGAATTTCTTTAAAACACTCGTAG 58.210 34.615 0.00 0.00 0.00 3.51
3227 3997 8.702438 CCGAATTTCTTTAAAACACTCGTAGTA 58.298 33.333 0.00 0.00 0.00 1.82
3354 4133 0.813184 CCGGTTTCGCTAGAGGTGTA 59.187 55.000 0.00 0.00 34.56 2.90
3447 4232 0.878086 GCGCCAGCTACTCATCTTCC 60.878 60.000 0.00 0.00 41.01 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.571290 TGCTACTGCGTGTTTAGTGTTTTCAC 62.571 42.308 0.00 0.00 45.72 3.18
1 2 4.260456 GCTACTGCGTGTTTAGTGTTTTCA 60.260 41.667 0.00 0.00 0.00 2.69
2 3 4.209112 GCTACTGCGTGTTTAGTGTTTTC 58.791 43.478 0.00 0.00 0.00 2.29
9 10 4.725556 TTTCTTGCTACTGCGTGTTTAG 57.274 40.909 0.00 0.00 43.34 1.85
35 36 1.756950 CCCGCTCAGCCTGGTAGTA 60.757 63.158 0.00 0.00 0.00 1.82
36 37 3.077556 CCCGCTCAGCCTGGTAGT 61.078 66.667 0.00 0.00 0.00 2.73
37 38 3.854669 CCCCGCTCAGCCTGGTAG 61.855 72.222 0.00 0.00 0.00 3.18
106 107 2.409870 CCATCAGCAAGGCGGAACC 61.410 63.158 0.00 0.00 36.25 3.62
108 109 1.675310 CACCATCAGCAAGGCGGAA 60.675 57.895 0.00 0.00 36.25 4.30
113 114 2.345760 GGGCACACCATCAGCAAGG 61.346 63.158 0.00 0.00 39.85 3.61
115 116 2.519949 TGGGCACACCATCAGCAA 59.480 55.556 0.00 0.00 46.80 3.91
129 130 2.159254 CGGATTTTGTGCCTGTATTGGG 60.159 50.000 0.00 0.00 0.00 4.12
130 131 2.735126 GCGGATTTTGTGCCTGTATTGG 60.735 50.000 0.00 0.00 0.00 3.16
131 132 2.529151 GCGGATTTTGTGCCTGTATTG 58.471 47.619 0.00 0.00 0.00 1.90
132 133 1.132262 CGCGGATTTTGTGCCTGTATT 59.868 47.619 0.00 0.00 0.00 1.89
133 134 0.732571 CGCGGATTTTGTGCCTGTAT 59.267 50.000 0.00 0.00 0.00 2.29
134 135 0.604243 ACGCGGATTTTGTGCCTGTA 60.604 50.000 12.47 0.00 0.00 2.74
135 136 1.852067 GACGCGGATTTTGTGCCTGT 61.852 55.000 12.47 0.00 0.00 4.00
136 137 1.154225 GACGCGGATTTTGTGCCTG 60.154 57.895 12.47 0.00 0.00 4.85
137 138 1.577328 CTGACGCGGATTTTGTGCCT 61.577 55.000 12.47 0.00 0.00 4.75
138 139 1.154225 CTGACGCGGATTTTGTGCC 60.154 57.895 12.47 0.00 0.00 5.01
139 140 1.797537 GCTGACGCGGATTTTGTGC 60.798 57.895 12.47 0.00 0.00 4.57
140 141 0.238289 AAGCTGACGCGGATTTTGTG 59.762 50.000 12.47 0.00 42.32 3.33
141 142 0.238289 CAAGCTGACGCGGATTTTGT 59.762 50.000 12.47 0.00 42.32 2.83
142 143 1.067199 GCAAGCTGACGCGGATTTTG 61.067 55.000 12.47 9.50 42.32 2.44
143 144 1.210155 GCAAGCTGACGCGGATTTT 59.790 52.632 12.47 0.00 42.32 1.82
144 145 2.870372 GCAAGCTGACGCGGATTT 59.130 55.556 12.47 0.00 42.32 2.17
164 165 4.326255 CGGGGAGCAAGAGCAAAT 57.674 55.556 0.00 0.00 45.49 2.32
195 196 4.201679 TATCGGCGGTGGAGCGTG 62.202 66.667 7.21 0.00 38.18 5.34
196 197 4.203076 GTATCGGCGGTGGAGCGT 62.203 66.667 7.21 0.00 38.18 5.07
199 200 4.944372 GGCGTATCGGCGGTGGAG 62.944 72.222 7.21 0.00 43.33 3.86
207 208 2.581409 GTGGTGTCGGCGTATCGG 60.581 66.667 6.85 0.00 0.00 4.18
208 209 2.156446 GTGTGGTGTCGGCGTATCG 61.156 63.158 6.85 0.00 0.00 2.92
247 248 0.105194 TGACTGTGGGAAGACCTGGA 60.105 55.000 0.00 0.00 41.11 3.86
267 268 3.077359 CAGATTTGACTGTGGGAAGACC 58.923 50.000 0.00 0.00 40.81 3.85
277 278 2.082231 CCAGCCTGACAGATTTGACTG 58.918 52.381 3.32 0.00 42.78 3.51
278 279 1.701847 ACCAGCCTGACAGATTTGACT 59.298 47.619 3.32 0.00 0.00 3.41
279 280 2.079925 GACCAGCCTGACAGATTTGAC 58.920 52.381 3.32 0.00 0.00 3.18
280 281 1.699083 TGACCAGCCTGACAGATTTGA 59.301 47.619 3.32 0.00 0.00 2.69
281 282 2.189594 TGACCAGCCTGACAGATTTG 57.810 50.000 3.32 0.00 0.00 2.32
282 283 3.521126 ACTATGACCAGCCTGACAGATTT 59.479 43.478 3.32 0.00 0.00 2.17
283 284 3.110705 ACTATGACCAGCCTGACAGATT 58.889 45.455 3.32 0.00 0.00 2.40
284 285 2.433604 CACTATGACCAGCCTGACAGAT 59.566 50.000 3.32 0.00 0.00 2.90
285 286 1.827344 CACTATGACCAGCCTGACAGA 59.173 52.381 3.32 0.00 0.00 3.41
286 287 1.134580 CCACTATGACCAGCCTGACAG 60.135 57.143 0.00 0.00 0.00 3.51
287 288 0.904649 CCACTATGACCAGCCTGACA 59.095 55.000 0.00 0.00 0.00 3.58
288 289 1.195115 TCCACTATGACCAGCCTGAC 58.805 55.000 0.00 0.00 0.00 3.51
289 290 1.951209 TTCCACTATGACCAGCCTGA 58.049 50.000 0.00 0.00 0.00 3.86
290 291 2.026822 ACTTTCCACTATGACCAGCCTG 60.027 50.000 0.00 0.00 0.00 4.85
291 292 2.269940 ACTTTCCACTATGACCAGCCT 58.730 47.619 0.00 0.00 0.00 4.58
292 293 2.789409 ACTTTCCACTATGACCAGCC 57.211 50.000 0.00 0.00 0.00 4.85
293 294 4.575885 TGTTACTTTCCACTATGACCAGC 58.424 43.478 0.00 0.00 0.00 4.85
294 295 9.477484 GTATATGTTACTTTCCACTATGACCAG 57.523 37.037 0.00 0.00 0.00 4.00
295 296 9.209048 AGTATATGTTACTTTCCACTATGACCA 57.791 33.333 0.00 0.00 0.00 4.02
335 336 9.170584 CGGATGTAATATTATACACTAGCATCG 57.829 37.037 0.00 0.00 38.53 3.84
342 343 8.799367 TGCACTACGGATGTAATATTATACACT 58.201 33.333 0.00 0.00 38.53 3.55
343 344 8.975410 TGCACTACGGATGTAATATTATACAC 57.025 34.615 0.00 0.00 38.53 2.90
350 351 9.185680 TGATACTATGCACTACGGATGTAATAT 57.814 33.333 0.00 0.00 0.00 1.28
351 352 8.570068 TGATACTATGCACTACGGATGTAATA 57.430 34.615 0.00 0.00 0.00 0.98
352 353 7.462571 TGATACTATGCACTACGGATGTAAT 57.537 36.000 0.00 0.00 0.00 1.89
353 354 6.887626 TGATACTATGCACTACGGATGTAA 57.112 37.500 0.00 0.00 0.00 2.41
354 355 8.570068 TTATGATACTATGCACTACGGATGTA 57.430 34.615 0.00 0.00 0.00 2.29
355 356 5.984695 ATGATACTATGCACTACGGATGT 57.015 39.130 0.00 0.00 0.00 3.06
356 357 8.757164 TTTTATGATACTATGCACTACGGATG 57.243 34.615 0.00 0.00 0.00 3.51
359 360 9.856488 ACTATTTTATGATACTATGCACTACGG 57.144 33.333 0.00 0.00 0.00 4.02
383 384 9.664332 GCAATAAATGAGACCATCTATGATACT 57.336 33.333 0.00 0.00 31.40 2.12
384 385 9.664332 AGCAATAAATGAGACCATCTATGATAC 57.336 33.333 0.00 0.00 31.40 2.24
387 388 9.662947 CATAGCAATAAATGAGACCATCTATGA 57.337 33.333 0.00 0.00 34.92 2.15
388 389 8.396390 GCATAGCAATAAATGAGACCATCTATG 58.604 37.037 0.00 0.00 35.45 2.23
389 390 8.105197 TGCATAGCAATAAATGAGACCATCTAT 58.895 33.333 0.00 0.00 34.76 1.98
390 391 7.452562 TGCATAGCAATAAATGAGACCATCTA 58.547 34.615 0.00 0.00 34.76 1.98
391 392 6.301486 TGCATAGCAATAAATGAGACCATCT 58.699 36.000 0.00 0.00 34.76 2.90
392 393 6.564709 TGCATAGCAATAAATGAGACCATC 57.435 37.500 0.00 0.00 34.76 3.51
393 394 6.717997 TCATGCATAGCAATAAATGAGACCAT 59.282 34.615 0.00 0.00 43.62 3.55
394 395 6.016860 GTCATGCATAGCAATAAATGAGACCA 60.017 38.462 0.00 0.00 43.62 4.02
395 396 6.016860 TGTCATGCATAGCAATAAATGAGACC 60.017 38.462 0.00 0.00 43.62 3.85
396 397 6.854892 GTGTCATGCATAGCAATAAATGAGAC 59.145 38.462 0.00 0.00 43.62 3.36
397 398 6.543100 TGTGTCATGCATAGCAATAAATGAGA 59.457 34.615 0.00 0.00 43.62 3.27
398 399 6.731164 TGTGTCATGCATAGCAATAAATGAG 58.269 36.000 0.00 0.00 43.62 2.90
399 400 6.696441 TGTGTCATGCATAGCAATAAATGA 57.304 33.333 0.00 0.00 43.62 2.57
400 401 8.294577 AGTATGTGTCATGCATAGCAATAAATG 58.705 33.333 0.00 0.00 43.62 2.32
401 402 8.400184 AGTATGTGTCATGCATAGCAATAAAT 57.600 30.769 0.00 0.00 43.62 1.40
402 403 7.041167 GGAGTATGTGTCATGCATAGCAATAAA 60.041 37.037 0.00 0.00 43.62 1.40
403 404 6.427853 GGAGTATGTGTCATGCATAGCAATAA 59.572 38.462 0.00 0.00 43.62 1.40
404 405 5.934043 GGAGTATGTGTCATGCATAGCAATA 59.066 40.000 0.00 0.85 43.62 1.90
405 406 4.758674 GGAGTATGTGTCATGCATAGCAAT 59.241 41.667 0.00 1.69 43.62 3.56
406 407 4.129380 GGAGTATGTGTCATGCATAGCAA 58.871 43.478 0.00 0.00 43.62 3.91
407 408 3.494924 GGGAGTATGTGTCATGCATAGCA 60.495 47.826 0.00 0.00 44.86 3.49
408 409 3.070018 GGGAGTATGTGTCATGCATAGC 58.930 50.000 0.00 0.00 30.45 2.97
409 410 4.562347 GGAGGGAGTATGTGTCATGCATAG 60.562 50.000 0.00 0.00 30.45 2.23
410 411 3.324846 GGAGGGAGTATGTGTCATGCATA 59.675 47.826 0.00 0.00 0.00 3.14
411 412 2.105477 GGAGGGAGTATGTGTCATGCAT 59.895 50.000 0.00 0.00 0.00 3.96
412 413 1.486310 GGAGGGAGTATGTGTCATGCA 59.514 52.381 0.00 0.00 0.00 3.96
413 414 1.539065 CGGAGGGAGTATGTGTCATGC 60.539 57.143 0.00 0.00 0.00 4.06
414 415 1.757118 ACGGAGGGAGTATGTGTCATG 59.243 52.381 0.00 0.00 0.00 3.07
415 416 2.160721 ACGGAGGGAGTATGTGTCAT 57.839 50.000 0.00 0.00 0.00 3.06
416 417 1.822990 GAACGGAGGGAGTATGTGTCA 59.177 52.381 0.00 0.00 0.00 3.58
417 418 1.136500 GGAACGGAGGGAGTATGTGTC 59.864 57.143 0.00 0.00 0.00 3.67
418 419 1.192428 GGAACGGAGGGAGTATGTGT 58.808 55.000 0.00 0.00 0.00 3.72
419 420 1.191535 TGGAACGGAGGGAGTATGTG 58.808 55.000 0.00 0.00 0.00 3.21
420 421 1.946984 TTGGAACGGAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
421 422 3.343941 TTTTGGAACGGAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
422 423 5.906772 ATATTTTGGAACGGAGGGAGTAT 57.093 39.130 0.00 0.00 0.00 2.12
423 424 6.384886 ACTTATATTTTGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
424 425 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
425 426 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
426 427 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
427 428 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
428 429 7.553044 AGAAAGACTTATATTTTGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
429 430 8.494016 AGAAAGACTTATATTTTGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
430 431 9.595823 CTAGAAAGACTTATATTTTGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
431 432 9.595823 TCTAGAAAGACTTATATTTTGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
441 442 9.661954 TGGTGGAATCTCTAGAAAGACTTATAT 57.338 33.333 0.00 0.00 0.00 0.86
442 443 9.488762 TTGGTGGAATCTCTAGAAAGACTTATA 57.511 33.333 0.00 0.00 0.00 0.98
443 444 7.979786 TGGTGGAATCTCTAGAAAGACTTAT 57.020 36.000 0.00 0.00 0.00 1.73
444 445 7.455008 ACTTGGTGGAATCTCTAGAAAGACTTA 59.545 37.037 0.00 0.00 0.00 2.24
445 446 6.271159 ACTTGGTGGAATCTCTAGAAAGACTT 59.729 38.462 0.00 0.00 0.00 3.01
446 447 5.782845 ACTTGGTGGAATCTCTAGAAAGACT 59.217 40.000 0.00 0.00 0.00 3.24
447 448 5.872070 CACTTGGTGGAATCTCTAGAAAGAC 59.128 44.000 0.00 0.00 0.00 3.01
448 449 5.780282 TCACTTGGTGGAATCTCTAGAAAGA 59.220 40.000 0.00 0.00 33.87 2.52
449 450 5.872070 GTCACTTGGTGGAATCTCTAGAAAG 59.128 44.000 0.00 0.00 33.87 2.62
450 451 5.544176 AGTCACTTGGTGGAATCTCTAGAAA 59.456 40.000 0.00 0.00 33.87 2.52
451 452 5.087323 AGTCACTTGGTGGAATCTCTAGAA 58.913 41.667 0.00 0.00 33.87 2.10
452 453 4.678256 AGTCACTTGGTGGAATCTCTAGA 58.322 43.478 0.00 0.00 33.87 2.43
453 454 5.419155 TGTAGTCACTTGGTGGAATCTCTAG 59.581 44.000 0.00 0.00 33.87 2.43
454 455 5.330233 TGTAGTCACTTGGTGGAATCTCTA 58.670 41.667 0.00 0.00 33.87 2.43
455 456 4.160329 TGTAGTCACTTGGTGGAATCTCT 58.840 43.478 0.00 0.00 33.87 3.10
456 457 4.537135 TGTAGTCACTTGGTGGAATCTC 57.463 45.455 0.00 0.00 33.87 2.75
457 458 5.394224 CGTATGTAGTCACTTGGTGGAATCT 60.394 44.000 0.00 0.00 33.87 2.40
458 459 4.804139 CGTATGTAGTCACTTGGTGGAATC 59.196 45.833 0.00 0.00 33.87 2.52
459 460 4.382685 CCGTATGTAGTCACTTGGTGGAAT 60.383 45.833 0.00 0.00 33.87 3.01
460 461 3.056393 CCGTATGTAGTCACTTGGTGGAA 60.056 47.826 0.00 0.00 33.87 3.53
461 462 2.494471 CCGTATGTAGTCACTTGGTGGA 59.506 50.000 0.00 0.00 33.87 4.02
462 463 2.494471 TCCGTATGTAGTCACTTGGTGG 59.506 50.000 0.00 0.00 33.87 4.61
463 464 3.861276 TCCGTATGTAGTCACTTGGTG 57.139 47.619 0.00 0.00 34.45 4.17
464 465 3.575256 TGTTCCGTATGTAGTCACTTGGT 59.425 43.478 0.00 0.00 0.00 3.67
465 466 4.182693 TGTTCCGTATGTAGTCACTTGG 57.817 45.455 0.00 0.00 0.00 3.61
466 467 6.533819 TTTTGTTCCGTATGTAGTCACTTG 57.466 37.500 0.00 0.00 0.00 3.16
467 468 6.932400 TCATTTTGTTCCGTATGTAGTCACTT 59.068 34.615 0.00 0.00 0.00 3.16
468 469 6.460781 TCATTTTGTTCCGTATGTAGTCACT 58.539 36.000 0.00 0.00 0.00 3.41
469 470 6.367969 ACTCATTTTGTTCCGTATGTAGTCAC 59.632 38.462 0.00 0.00 0.00 3.67
470 471 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
471 472 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
472 473 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
473 474 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
474 475 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
475 476 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
476 477 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
477 478 7.822334 TGTAGATTCACTCATTTTGTTCCGTAT 59.178 33.333 0.00 0.00 0.00 3.06
478 479 7.117236 GTGTAGATTCACTCATTTTGTTCCGTA 59.883 37.037 0.00 0.00 35.68 4.02
479 480 5.995282 TGTAGATTCACTCATTTTGTTCCGT 59.005 36.000 0.00 0.00 0.00 4.69
480 481 6.147821 AGTGTAGATTCACTCATTTTGTTCCG 59.852 38.462 0.00 0.00 44.07 4.30
481 482 7.440523 AGTGTAGATTCACTCATTTTGTTCC 57.559 36.000 0.00 0.00 44.07 3.62
493 494 8.969267 CGGACATATTTTAGAGTGTAGATTCAC 58.031 37.037 0.00 0.00 38.46 3.18
494 495 7.652105 GCGGACATATTTTAGAGTGTAGATTCA 59.348 37.037 0.00 0.00 0.00 2.57
495 496 7.652105 TGCGGACATATTTTAGAGTGTAGATTC 59.348 37.037 0.00 0.00 0.00 2.52
496 497 7.497595 TGCGGACATATTTTAGAGTGTAGATT 58.502 34.615 0.00 0.00 0.00 2.40
497 498 7.050970 TGCGGACATATTTTAGAGTGTAGAT 57.949 36.000 0.00 0.00 0.00 1.98
498 499 6.459670 TGCGGACATATTTTAGAGTGTAGA 57.540 37.500 0.00 0.00 0.00 2.59
499 500 7.865889 TGTATGCGGACATATTTTAGAGTGTAG 59.134 37.037 0.00 0.00 40.79 2.74
500 501 7.718525 TGTATGCGGACATATTTTAGAGTGTA 58.281 34.615 0.00 0.00 40.79 2.90
501 502 6.578944 TGTATGCGGACATATTTTAGAGTGT 58.421 36.000 0.00 0.00 40.79 3.55
502 503 7.148573 GGATGTATGCGGACATATTTTAGAGTG 60.149 40.741 3.46 0.00 40.18 3.51
503 504 6.874134 GGATGTATGCGGACATATTTTAGAGT 59.126 38.462 3.46 0.00 40.18 3.24
504 505 6.035005 CGGATGTATGCGGACATATTTTAGAG 59.965 42.308 3.46 0.00 40.18 2.43
505 506 5.867174 CGGATGTATGCGGACATATTTTAGA 59.133 40.000 3.46 0.00 40.18 2.10
506 507 5.637810 ACGGATGTATGCGGACATATTTTAG 59.362 40.000 10.41 0.00 46.28 1.85
507 508 5.543714 ACGGATGTATGCGGACATATTTTA 58.456 37.500 10.41 0.00 46.28 1.52
508 509 4.385825 ACGGATGTATGCGGACATATTTT 58.614 39.130 10.41 0.00 46.28 1.82
509 510 4.002906 ACGGATGTATGCGGACATATTT 57.997 40.909 10.41 0.00 46.28 1.40
510 511 3.678056 ACGGATGTATGCGGACATATT 57.322 42.857 10.41 0.00 46.28 1.28
551 552 9.524106 CCTCCGTTTTTAAATGTAAGTCTTTTT 57.476 29.630 0.00 0.00 0.00 1.94
552 553 8.139350 CCCTCCGTTTTTAAATGTAAGTCTTTT 58.861 33.333 0.00 0.00 0.00 2.27
553 554 7.503230 TCCCTCCGTTTTTAAATGTAAGTCTTT 59.497 33.333 0.00 0.00 0.00 2.52
554 555 6.999871 TCCCTCCGTTTTTAAATGTAAGTCTT 59.000 34.615 0.00 0.00 0.00 3.01
555 556 6.536447 TCCCTCCGTTTTTAAATGTAAGTCT 58.464 36.000 0.00 0.00 0.00 3.24
556 557 6.429078 ACTCCCTCCGTTTTTAAATGTAAGTC 59.571 38.462 0.00 0.00 0.00 3.01
557 558 6.301486 ACTCCCTCCGTTTTTAAATGTAAGT 58.699 36.000 0.00 0.00 0.00 2.24
558 559 6.812879 ACTCCCTCCGTTTTTAAATGTAAG 57.187 37.500 0.00 0.00 0.00 2.34
559 560 7.452562 ACTACTCCCTCCGTTTTTAAATGTAA 58.547 34.615 0.00 0.00 0.00 2.41
560 561 7.008021 ACTACTCCCTCCGTTTTTAAATGTA 57.992 36.000 0.00 0.00 0.00 2.29
561 562 5.872963 ACTACTCCCTCCGTTTTTAAATGT 58.127 37.500 0.00 0.00 0.00 2.71
562 563 6.036844 GCTACTACTCCCTCCGTTTTTAAATG 59.963 42.308 0.00 0.00 0.00 2.32
563 564 6.111382 GCTACTACTCCCTCCGTTTTTAAAT 58.889 40.000 0.00 0.00 0.00 1.40
564 565 5.011943 TGCTACTACTCCCTCCGTTTTTAAA 59.988 40.000 0.00 0.00 0.00 1.52
565 566 4.527816 TGCTACTACTCCCTCCGTTTTTAA 59.472 41.667 0.00 0.00 0.00 1.52
566 567 4.088634 TGCTACTACTCCCTCCGTTTTTA 58.911 43.478 0.00 0.00 0.00 1.52
567 568 2.901839 TGCTACTACTCCCTCCGTTTTT 59.098 45.455 0.00 0.00 0.00 1.94
568 569 2.532843 TGCTACTACTCCCTCCGTTTT 58.467 47.619 0.00 0.00 0.00 2.43
569 570 2.226962 TGCTACTACTCCCTCCGTTT 57.773 50.000 0.00 0.00 0.00 3.60
570 571 2.456073 ATGCTACTACTCCCTCCGTT 57.544 50.000 0.00 0.00 0.00 4.44
571 572 3.220940 GTTATGCTACTACTCCCTCCGT 58.779 50.000 0.00 0.00 0.00 4.69
572 573 3.220110 TGTTATGCTACTACTCCCTCCG 58.780 50.000 0.00 0.00 0.00 4.63
573 574 5.810080 AATGTTATGCTACTACTCCCTCC 57.190 43.478 0.00 0.00 0.00 4.30
610 611 9.482175 GAGAGGGTCATAATAACATAGGTAGAT 57.518 37.037 0.00 0.00 0.00 1.98
611 612 8.679725 AGAGAGGGTCATAATAACATAGGTAGA 58.320 37.037 0.00 0.00 0.00 2.59
612 613 8.887264 AGAGAGGGTCATAATAACATAGGTAG 57.113 38.462 0.00 0.00 0.00 3.18
613 614 8.679725 AGAGAGAGGGTCATAATAACATAGGTA 58.320 37.037 0.00 0.00 0.00 3.08
614 615 7.540183 AGAGAGAGGGTCATAATAACATAGGT 58.460 38.462 0.00 0.00 0.00 3.08
615 616 8.429237 AAGAGAGAGGGTCATAATAACATAGG 57.571 38.462 0.00 0.00 0.00 2.57
616 617 9.308000 AGAAGAGAGAGGGTCATAATAACATAG 57.692 37.037 0.00 0.00 0.00 2.23
617 618 9.661954 AAGAAGAGAGAGGGTCATAATAACATA 57.338 33.333 0.00 0.00 0.00 2.29
618 619 8.560124 AAGAAGAGAGAGGGTCATAATAACAT 57.440 34.615 0.00 0.00 0.00 2.71
619 620 7.979786 AAGAAGAGAGAGGGTCATAATAACA 57.020 36.000 0.00 0.00 0.00 2.41
625 626 9.892130 GAAAATTAAAGAAGAGAGAGGGTCATA 57.108 33.333 0.00 0.00 0.00 2.15
626 627 8.610369 AGAAAATTAAAGAAGAGAGAGGGTCAT 58.390 33.333 0.00 0.00 0.00 3.06
627 628 7.880195 CAGAAAATTAAAGAAGAGAGAGGGTCA 59.120 37.037 0.00 0.00 0.00 4.02
628 629 7.880713 ACAGAAAATTAAAGAAGAGAGAGGGTC 59.119 37.037 0.00 0.00 0.00 4.46
629 630 7.750655 ACAGAAAATTAAAGAAGAGAGAGGGT 58.249 34.615 0.00 0.00 0.00 4.34
630 631 7.064016 CGACAGAAAATTAAAGAAGAGAGAGGG 59.936 40.741 0.00 0.00 0.00 4.30
631 632 7.412455 GCGACAGAAAATTAAAGAAGAGAGAGG 60.412 40.741 0.00 0.00 0.00 3.69
632 633 7.116948 TGCGACAGAAAATTAAAGAAGAGAGAG 59.883 37.037 0.00 0.00 0.00 3.20
633 634 6.929049 TGCGACAGAAAATTAAAGAAGAGAGA 59.071 34.615 0.00 0.00 0.00 3.10
634 635 7.121974 TGCGACAGAAAATTAAAGAAGAGAG 57.878 36.000 0.00 0.00 0.00 3.20
635 636 7.672983 ATGCGACAGAAAATTAAAGAAGAGA 57.327 32.000 0.00 0.00 0.00 3.10
636 637 9.825972 TTTATGCGACAGAAAATTAAAGAAGAG 57.174 29.630 0.00 0.00 0.00 2.85
645 646 9.329913 GCGAATATATTTATGCGACAGAAAATT 57.670 29.630 7.65 1.38 38.91 1.82
646 647 8.503196 TGCGAATATATTTATGCGACAGAAAAT 58.497 29.630 7.65 6.16 38.91 1.82
647 648 7.856556 TGCGAATATATTTATGCGACAGAAAA 58.143 30.769 7.65 0.24 38.91 2.29
648 649 7.414814 TGCGAATATATTTATGCGACAGAAA 57.585 32.000 7.65 2.94 38.91 2.52
649 650 7.170828 ACTTGCGAATATATTTATGCGACAGAA 59.829 33.333 7.65 0.00 38.91 3.02
650 651 6.645003 ACTTGCGAATATATTTATGCGACAGA 59.355 34.615 7.65 0.00 38.91 3.41
651 652 6.821482 ACTTGCGAATATATTTATGCGACAG 58.179 36.000 7.65 4.80 38.91 3.51
652 653 6.128661 GGACTTGCGAATATATTTATGCGACA 60.129 38.462 7.65 3.00 38.91 4.35
653 654 6.241385 GGACTTGCGAATATATTTATGCGAC 58.759 40.000 7.65 0.70 38.91 5.19
654 655 5.350365 GGGACTTGCGAATATATTTATGCGA 59.650 40.000 7.65 7.80 38.91 5.10
655 656 5.351465 AGGGACTTGCGAATATATTTATGCG 59.649 40.000 0.00 0.00 35.94 4.73
656 657 6.743575 AGGGACTTGCGAATATATTTATGC 57.256 37.500 0.00 5.53 27.25 3.14
657 658 9.436957 ACTTAGGGACTTGCGAATATATTTATG 57.563 33.333 0.00 0.00 41.75 1.90
658 659 9.654663 GACTTAGGGACTTGCGAATATATTTAT 57.345 33.333 0.00 0.00 41.75 1.40
659 660 8.867097 AGACTTAGGGACTTGCGAATATATTTA 58.133 33.333 0.00 0.00 41.75 1.40
660 661 7.736893 AGACTTAGGGACTTGCGAATATATTT 58.263 34.615 0.00 0.00 41.75 1.40
661 662 7.304497 AGACTTAGGGACTTGCGAATATATT 57.696 36.000 0.00 0.00 41.75 1.28
662 663 6.919775 AGACTTAGGGACTTGCGAATATAT 57.080 37.500 0.00 0.00 41.75 0.86
663 664 7.577046 GCATAGACTTAGGGACTTGCGAATATA 60.577 40.741 0.00 0.00 41.75 0.86
664 665 6.692486 CATAGACTTAGGGACTTGCGAATAT 58.308 40.000 0.00 0.00 41.75 1.28
665 666 5.509163 GCATAGACTTAGGGACTTGCGAATA 60.509 44.000 0.00 0.00 41.75 1.75
666 667 4.740934 GCATAGACTTAGGGACTTGCGAAT 60.741 45.833 0.00 0.00 41.75 3.34
667 668 3.430374 GCATAGACTTAGGGACTTGCGAA 60.430 47.826 0.00 0.00 41.75 4.70
668 669 2.100916 GCATAGACTTAGGGACTTGCGA 59.899 50.000 0.00 0.00 41.75 5.10
669 670 2.474816 GCATAGACTTAGGGACTTGCG 58.525 52.381 0.00 0.00 41.75 4.85
670 671 2.485657 GGGCATAGACTTAGGGACTTGC 60.486 54.545 0.00 0.00 41.75 4.01
671 672 2.771943 TGGGCATAGACTTAGGGACTTG 59.228 50.000 0.00 0.00 41.75 3.16
672 673 3.041946 CTGGGCATAGACTTAGGGACTT 58.958 50.000 0.00 0.00 41.75 3.01
673 674 2.683768 CTGGGCATAGACTTAGGGACT 58.316 52.381 0.00 0.00 46.37 3.85
674 675 1.070914 GCTGGGCATAGACTTAGGGAC 59.929 57.143 0.00 0.00 0.00 4.46
675 676 1.424638 GCTGGGCATAGACTTAGGGA 58.575 55.000 0.00 0.00 0.00 4.20
676 677 0.398318 GGCTGGGCATAGACTTAGGG 59.602 60.000 0.00 0.00 0.00 3.53
677 678 1.346068 GAGGCTGGGCATAGACTTAGG 59.654 57.143 0.00 0.00 35.77 2.69
678 679 2.042464 TGAGGCTGGGCATAGACTTAG 58.958 52.381 0.00 0.00 35.77 2.18
679 680 2.174685 TGAGGCTGGGCATAGACTTA 57.825 50.000 0.00 0.00 35.77 2.24
680 681 1.289160 TTGAGGCTGGGCATAGACTT 58.711 50.000 0.00 0.00 35.77 3.01
681 682 1.065126 GTTTGAGGCTGGGCATAGACT 60.065 52.381 0.00 0.00 39.24 3.24
682 683 1.340017 TGTTTGAGGCTGGGCATAGAC 60.340 52.381 0.00 0.00 0.00 2.59
683 684 0.991146 TGTTTGAGGCTGGGCATAGA 59.009 50.000 0.00 0.00 0.00 1.98
684 685 1.474077 GTTGTTTGAGGCTGGGCATAG 59.526 52.381 0.00 0.00 0.00 2.23
685 686 1.202989 TGTTGTTTGAGGCTGGGCATA 60.203 47.619 0.00 0.00 0.00 3.14
686 687 0.469705 TGTTGTTTGAGGCTGGGCAT 60.470 50.000 0.00 0.00 0.00 4.40
687 688 0.685785 TTGTTGTTTGAGGCTGGGCA 60.686 50.000 0.00 0.00 0.00 5.36
688 689 0.463620 TTTGTTGTTTGAGGCTGGGC 59.536 50.000 0.00 0.00 0.00 5.36
689 690 2.093764 TGTTTTGTTGTTTGAGGCTGGG 60.094 45.455 0.00 0.00 0.00 4.45
690 691 3.244033 TGTTTTGTTGTTTGAGGCTGG 57.756 42.857 0.00 0.00 0.00 4.85
691 692 4.091800 CACTTGTTTTGTTGTTTGAGGCTG 59.908 41.667 0.00 0.00 0.00 4.85
692 693 4.244862 CACTTGTTTTGTTGTTTGAGGCT 58.755 39.130 0.00 0.00 0.00 4.58
693 694 3.993736 ACACTTGTTTTGTTGTTTGAGGC 59.006 39.130 0.00 0.00 0.00 4.70
694 695 4.625311 GGACACTTGTTTTGTTGTTTGAGG 59.375 41.667 0.00 0.00 0.00 3.86
695 696 5.118510 GTGGACACTTGTTTTGTTGTTTGAG 59.881 40.000 0.00 0.00 0.00 3.02
696 697 4.985409 GTGGACACTTGTTTTGTTGTTTGA 59.015 37.500 0.00 0.00 0.00 2.69
697 698 4.987912 AGTGGACACTTGTTTTGTTGTTTG 59.012 37.500 0.00 0.00 38.83 2.93
698 699 5.208463 AGTGGACACTTGTTTTGTTGTTT 57.792 34.783 0.00 0.00 38.83 2.83
699 700 4.321675 GGAGTGGACACTTGTTTTGTTGTT 60.322 41.667 6.40 0.00 42.66 2.83
700 701 3.192633 GGAGTGGACACTTGTTTTGTTGT 59.807 43.478 6.40 0.00 42.66 3.32
701 702 3.443681 AGGAGTGGACACTTGTTTTGTTG 59.556 43.478 6.40 0.00 42.66 3.33
702 703 3.694566 GAGGAGTGGACACTTGTTTTGTT 59.305 43.478 6.40 0.00 42.66 2.83
703 704 3.054361 AGAGGAGTGGACACTTGTTTTGT 60.054 43.478 6.40 0.00 42.66 2.83
704 705 3.313526 CAGAGGAGTGGACACTTGTTTTG 59.686 47.826 6.40 0.00 42.66 2.44
705 706 3.545703 CAGAGGAGTGGACACTTGTTTT 58.454 45.455 6.40 0.00 42.66 2.43
804 829 6.073003 CGGGGCAATTAATGAGATAGTTCTTC 60.073 42.308 0.00 0.00 30.30 2.87
856 884 8.912988 TGCATTAAATTAAGATTAGAAGGGTGG 58.087 33.333 0.00 0.00 0.00 4.61
936 964 3.695825 GGAGTGGAGGGGAGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
939 972 0.688087 GTACTGGAGTGGAGGGGAGG 60.688 65.000 0.00 0.00 0.00 4.30
944 977 0.247736 GTGCTGTACTGGAGTGGAGG 59.752 60.000 1.65 0.00 0.00 4.30
969 1002 4.410400 GAACTGGAGGTGGGGCGG 62.410 72.222 0.00 0.00 0.00 6.13
1199 1244 3.154584 AAACGAACTGTCCCGGCGA 62.155 57.895 9.30 0.00 0.00 5.54
1395 1440 0.331954 TGAAGTACTCTCCGCTCCCT 59.668 55.000 0.00 0.00 0.00 4.20
1404 1449 2.761208 CCCGATCTTGGTGAAGTACTCT 59.239 50.000 0.00 0.00 0.00 3.24
1944 1989 3.319198 GGGGTGAAGGACGAGGCA 61.319 66.667 0.00 0.00 0.00 4.75
2409 2454 1.666872 GTCGAACACCACCCGGAAG 60.667 63.158 0.73 0.00 35.59 3.46
2459 2504 3.648545 ACTCCTCATATCTTAACAGCCCC 59.351 47.826 0.00 0.00 0.00 5.80
2476 2521 3.734293 GCTAATCAAGCGACGTTACTCCT 60.734 47.826 0.00 0.00 42.53 3.69
2477 2522 2.534757 GCTAATCAAGCGACGTTACTCC 59.465 50.000 0.00 0.00 42.53 3.85
2503 2551 3.537580 TGACTGACAAAGCCGTACTTTT 58.462 40.909 0.00 0.00 46.73 2.27
2623 2680 1.734163 AACAAACCGCCTTATCCTCG 58.266 50.000 0.00 0.00 0.00 4.63
2698 3130 7.737869 TCACTGGTGTTTAGTAAAATGGAGTA 58.262 34.615 0.00 0.00 0.00 2.59
2723 3167 2.200373 AGGCCAGCACGTAAAAAGAT 57.800 45.000 5.01 0.00 0.00 2.40
2893 3370 3.665190 AGAGAACTTCCAAATGACGACC 58.335 45.455 0.00 0.00 0.00 4.79
2909 3386 3.771216 ACTCCTTGGTACCGTTAGAGAA 58.229 45.455 21.28 3.79 0.00 2.87
2918 3395 4.021632 ACGTCTCTTTTACTCCTTGGTACC 60.022 45.833 4.43 4.43 0.00 3.34
2996 3749 4.452733 GTGGCCTCTTCGGTCCCG 62.453 72.222 3.32 0.00 36.18 5.14
3056 3813 0.467106 TCCTCCGCTCCTCATCAGAG 60.467 60.000 0.00 0.00 41.72 3.35
3087 3844 1.006086 ACGGCAAAGCAAAGCAAAAC 58.994 45.000 0.00 0.00 0.00 2.43
3111 3873 4.371417 CAGGCAGCCCCACCACAT 62.371 66.667 8.22 0.00 35.39 3.21
3225 3995 2.809601 CGGGTCGCAGCACAGTAC 60.810 66.667 0.00 0.00 0.00 2.73
3354 4133 1.269012 CCTCCCATGTGCCATGTTTT 58.731 50.000 12.36 0.00 0.00 2.43
3447 4232 0.168788 CACTGTACGCATTTGCTGGG 59.831 55.000 0.51 0.00 43.21 4.45



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.