Multiple sequence alignment - TraesCS3D01G214200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G214200 chr3D 100.000 3683 0 0 4684 8366 289112864 289116546 0.000000e+00 6802.0
1 TraesCS3D01G214200 chr3D 100.000 2764 0 0 1 2764 289108181 289110944 0.000000e+00 5105.0
2 TraesCS3D01G214200 chr3D 100.000 1472 0 0 2936 4407 289111116 289112587 0.000000e+00 2719.0
3 TraesCS3D01G214200 chr3D 92.620 271 17 2 239 506 470358301 470358031 3.660000e-103 387.0
4 TraesCS3D01G214200 chr3D 92.251 271 18 2 239 506 333121167 333121437 1.700000e-101 381.0
5 TraesCS3D01G214200 chr3B 96.941 2256 55 4 499 2754 381759747 381761988 0.000000e+00 3771.0
6 TraesCS3D01G214200 chr3B 96.273 2200 31 12 6195 8366 381765337 381767513 0.000000e+00 3561.0
7 TraesCS3D01G214200 chr3B 94.774 1416 46 11 2979 4394 381761996 381763383 0.000000e+00 2180.0
8 TraesCS3D01G214200 chr3B 93.165 834 42 3 4686 5519 381763634 381764452 0.000000e+00 1210.0
9 TraesCS3D01G214200 chr3B 93.246 533 12 2 5665 6197 381764455 381764963 0.000000e+00 763.0
10 TraesCS3D01G214200 chr3B 95.868 242 8 2 3 243 381759511 381759751 2.830000e-104 390.0
11 TraesCS3D01G214200 chr3A 95.822 1891 37 13 6195 8058 379832587 379834462 0.000000e+00 3016.0
12 TraesCS3D01G214200 chr3A 95.401 1522 54 8 4684 6197 379830701 379832214 0.000000e+00 2409.0
13 TraesCS3D01G214200 chr3A 95.096 1407 39 5 2961 4365 379829271 379830649 0.000000e+00 2189.0
14 TraesCS3D01G214200 chr3A 95.382 1386 30 8 502 1882 379826859 379828215 0.000000e+00 2174.0
15 TraesCS3D01G214200 chr3A 96.822 881 25 1 1874 2754 379828398 379829275 0.000000e+00 1469.0
16 TraesCS3D01G214200 chr3A 94.006 317 12 2 8057 8366 379834525 379834841 2.730000e-129 473.0
17 TraesCS3D01G214200 chr3A 82.158 241 21 8 1 232 379826629 379826856 3.990000e-43 187.0
18 TraesCS3D01G214200 chr2B 89.043 721 42 11 7040 7749 168603717 168604411 0.000000e+00 859.0
19 TraesCS3D01G214200 chr2B 86.432 199 9 5 7859 8052 168609814 168609999 1.420000e-47 202.0
20 TraesCS3D01G214200 chr2B 94.667 75 4 0 7780 7854 168604409 168604483 5.310000e-22 117.0
21 TraesCS3D01G214200 chr2D 89.427 681 44 11 7184 7854 117814902 117815564 0.000000e+00 833.0
22 TraesCS3D01G214200 chr2D 92.989 271 16 2 239 506 315799783 315800053 7.870000e-105 392.0
23 TraesCS3D01G214200 chr2D 89.634 164 13 3 7040 7202 117814718 117814878 1.100000e-48 206.0
24 TraesCS3D01G214200 chr2D 100.000 33 0 0 7184 7216 117814854 117814886 2.520000e-05 62.1
25 TraesCS3D01G214200 chr2D 100.000 33 0 0 7155 7187 117814882 117814914 2.520000e-05 62.1
26 TraesCS3D01G214200 chr4D 93.633 267 15 1 235 499 4090992 4091258 1.690000e-106 398.0
27 TraesCS3D01G214200 chr4D 92.251 271 18 2 239 506 413967135 413967405 1.700000e-101 381.0
28 TraesCS3D01G214200 chr1B 93.893 262 13 2 241 499 261969297 261969558 7.870000e-105 392.0
29 TraesCS3D01G214200 chr7D 92.620 271 17 2 239 506 508589988 508590258 3.660000e-103 387.0
30 TraesCS3D01G214200 chr1D 92.620 271 17 2 239 506 382053739 382054009 3.660000e-103 387.0
31 TraesCS3D01G214200 chr1D 92.035 113 6 2 4000 4109 193504491 193504379 1.120000e-33 156.0
32 TraesCS3D01G214200 chr5D 92.251 271 18 2 239 506 420522839 420523109 1.700000e-101 381.0
33 TraesCS3D01G214200 chr6D 90.984 122 8 2 3989 4107 65644093 65644214 2.420000e-35 161.0
34 TraesCS3D01G214200 chr1A 92.857 112 6 1 4000 4109 240310237 240310126 2.420000e-35 161.0
35 TraesCS3D01G214200 chr5A 92.105 114 7 1 4001 4112 382070070 382069957 8.690000e-35 159.0
36 TraesCS3D01G214200 chr4B 93.519 108 5 1 4000 4105 146469323 146469216 8.690000e-35 159.0
37 TraesCS3D01G214200 chr4A 91.304 115 8 1 4000 4112 460230756 460230642 1.120000e-33 156.0
38 TraesCS3D01G214200 chr6B 89.344 122 10 2 3989 4107 140764473 140764594 5.230000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G214200 chr3D 289108181 289116546 8365 False 4875.333333 6802 100.000000 1 8366 3 chr3D.!!$F2 8365
1 TraesCS3D01G214200 chr3B 381759511 381767513 8002 False 1979.166667 3771 95.044500 3 8366 6 chr3B.!!$F1 8363
2 TraesCS3D01G214200 chr3A 379826629 379834841 8212 False 1702.428571 3016 93.526714 1 8366 7 chr3A.!!$F1 8365
3 TraesCS3D01G214200 chr2B 168603717 168604483 766 False 488.000000 859 91.855000 7040 7854 2 chr2B.!!$F2 814
4 TraesCS3D01G214200 chr2D 117814718 117815564 846 False 290.800000 833 94.765250 7040 7854 4 chr2D.!!$F2 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 273 0.465642 GCTGGCCATAGTGGGGTAAC 60.466 60.0 5.51 0.0 38.19 2.50 F
1215 1232 0.391661 GGATGGTTGCTCTTCTGCGA 60.392 55.0 0.00 0.0 35.36 5.10 F
1434 1451 0.394216 TTGCTCAACTGGTGCTGTGT 60.394 50.0 0.00 0.0 36.94 3.72 F
3159 3367 0.475044 ACCCTACCTTTTGCCGTTCA 59.525 50.0 0.00 0.0 0.00 3.18 F
3319 3527 0.178301 TTGTGTCACTAACCGTGCCA 59.822 50.0 4.27 0.0 43.46 4.92 F
3320 3528 0.178301 TGTGTCACTAACCGTGCCAA 59.822 50.0 4.27 0.0 43.46 4.52 F
5237 5447 0.998928 TGGGCTTGTACATGTCCCAT 59.001 50.0 26.11 0.0 41.71 4.00 F
5525 5736 0.391661 CGGCTCATTGCTGTACCTGT 60.392 55.0 0.00 0.0 42.87 4.00 F
5843 6054 0.395724 TAGGAGCCTCATCGTGCTGA 60.396 55.0 0.00 0.0 38.11 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 1274 0.102481 TAGACGCGAGATTTCCTGCC 59.898 55.000 15.93 0.0 0.00 4.85 R
3119 3327 0.037590 GCAGGTGTGTTGGTATGGGA 59.962 55.000 0.00 0.0 0.00 4.37 R
3307 3515 1.679153 CCAAAGTTTGGCACGGTTAGT 59.321 47.619 21.39 0.0 45.17 2.24 R
5155 5365 0.176910 GAGGCTAGACTGGAAGGTGC 59.823 60.000 0.42 0.0 39.30 5.01 R
5267 5477 2.093658 GGATAACAACCTCGAAGGCTCA 60.094 50.000 0.00 0.0 39.63 4.26 R
5329 5539 1.961277 GTGTCGTGGTCTTGGGCTG 60.961 63.158 0.00 0.0 0.00 4.85 R
7092 8062 0.680280 ATGCTGCTGCCTCTTCCTTG 60.680 55.000 13.47 0.0 38.71 3.61 R
7329 8347 9.214953 CGAAGAATCTGCATTTAATGAGTTTAC 57.785 33.333 9.36 0.0 0.00 2.01 R
7641 8661 0.247695 GTTCGCTCCTGTTATTGCGC 60.248 55.000 0.00 0.0 46.73 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 0.527817 GTGTTATCGGCTCGTCCTGG 60.528 60.000 0.00 0.00 0.00 4.45
70 71 0.892358 TCGTCCTGGCGTCAGTACTT 60.892 55.000 17.16 0.00 39.31 2.24
220 232 2.498078 GTTTGGGGAGACAAAACCAACA 59.502 45.455 0.00 0.00 42.24 3.33
255 267 2.435372 TTTTAGGCTGGCCATAGTGG 57.565 50.000 5.51 0.00 41.55 4.00
256 268 0.550914 TTTAGGCTGGCCATAGTGGG 59.449 55.000 5.51 0.00 38.19 4.61
257 269 1.352622 TTAGGCTGGCCATAGTGGGG 61.353 60.000 5.51 0.00 38.19 4.96
258 270 2.561378 TAGGCTGGCCATAGTGGGGT 62.561 60.000 5.51 0.00 38.19 4.95
259 271 2.076184 GGCTGGCCATAGTGGGGTA 61.076 63.158 5.51 0.00 38.19 3.69
260 272 1.641552 GGCTGGCCATAGTGGGGTAA 61.642 60.000 5.51 0.00 38.19 2.85
261 273 0.465642 GCTGGCCATAGTGGGGTAAC 60.466 60.000 5.51 0.00 38.19 2.50
262 274 0.916086 CTGGCCATAGTGGGGTAACA 59.084 55.000 5.51 0.00 38.19 2.41
263 275 1.494721 CTGGCCATAGTGGGGTAACAT 59.505 52.381 5.51 0.00 38.19 2.71
264 276 2.708861 CTGGCCATAGTGGGGTAACATA 59.291 50.000 5.51 0.00 38.19 2.29
265 277 3.124066 TGGCCATAGTGGGGTAACATAA 58.876 45.455 0.00 0.00 38.19 1.90
266 278 3.137544 TGGCCATAGTGGGGTAACATAAG 59.862 47.826 0.00 0.00 38.19 1.73
267 279 3.137728 GGCCATAGTGGGGTAACATAAGT 59.862 47.826 0.00 0.00 38.19 2.24
268 280 4.348754 GGCCATAGTGGGGTAACATAAGTA 59.651 45.833 0.00 0.00 38.19 2.24
269 281 5.512576 GGCCATAGTGGGGTAACATAAGTAG 60.513 48.000 0.00 0.00 38.19 2.57
270 282 5.071384 GCCATAGTGGGGTAACATAAGTAGT 59.929 44.000 0.00 0.00 38.19 2.73
271 283 6.268387 GCCATAGTGGGGTAACATAAGTAGTA 59.732 42.308 0.00 0.00 38.19 1.82
272 284 7.038516 GCCATAGTGGGGTAACATAAGTAGTAT 60.039 40.741 0.00 0.00 38.19 2.12
273 285 8.529476 CCATAGTGGGGTAACATAAGTAGTATC 58.471 40.741 0.00 0.00 39.74 2.24
274 286 9.085645 CATAGTGGGGTAACATAAGTAGTATCA 57.914 37.037 0.00 0.00 39.74 2.15
275 287 9.839185 ATAGTGGGGTAACATAAGTAGTATCAT 57.161 33.333 0.00 0.00 39.74 2.45
276 288 7.963532 AGTGGGGTAACATAAGTAGTATCATG 58.036 38.462 0.00 0.00 39.74 3.07
277 289 6.649557 GTGGGGTAACATAAGTAGTATCATGC 59.350 42.308 0.00 0.00 39.74 4.06
278 290 6.327887 TGGGGTAACATAAGTAGTATCATGCA 59.672 38.462 0.00 0.00 39.74 3.96
279 291 6.649557 GGGGTAACATAAGTAGTATCATGCAC 59.350 42.308 0.00 0.00 39.74 4.57
280 292 7.442656 GGGTAACATAAGTAGTATCATGCACT 58.557 38.462 0.00 5.31 39.74 4.40
281 293 7.931948 GGGTAACATAAGTAGTATCATGCACTT 59.068 37.037 5.29 4.15 39.74 3.16
282 294 8.765219 GGTAACATAAGTAGTATCATGCACTTG 58.235 37.037 5.29 0.00 33.47 3.16
283 295 7.792374 AACATAAGTAGTATCATGCACTTGG 57.208 36.000 5.29 2.42 33.47 3.61
284 296 6.291377 ACATAAGTAGTATCATGCACTTGGG 58.709 40.000 5.29 2.16 33.47 4.12
285 297 6.099701 ACATAAGTAGTATCATGCACTTGGGA 59.900 38.462 5.29 0.00 33.47 4.37
286 298 5.435686 AAGTAGTATCATGCACTTGGGAA 57.564 39.130 5.29 0.00 30.28 3.97
287 299 5.636903 AGTAGTATCATGCACTTGGGAAT 57.363 39.130 5.29 0.00 0.00 3.01
288 300 5.615289 AGTAGTATCATGCACTTGGGAATC 58.385 41.667 5.29 0.00 0.00 2.52
289 301 3.470709 AGTATCATGCACTTGGGAATCG 58.529 45.455 0.00 0.00 0.00 3.34
290 302 2.425143 ATCATGCACTTGGGAATCGT 57.575 45.000 0.00 0.00 0.00 3.73
291 303 1.452110 TCATGCACTTGGGAATCGTG 58.548 50.000 0.00 0.00 0.00 4.35
292 304 1.003003 TCATGCACTTGGGAATCGTGA 59.997 47.619 0.00 0.00 0.00 4.35
293 305 1.811965 CATGCACTTGGGAATCGTGAA 59.188 47.619 0.00 0.00 0.00 3.18
294 306 1.234821 TGCACTTGGGAATCGTGAAC 58.765 50.000 0.00 0.00 0.00 3.18
295 307 1.234821 GCACTTGGGAATCGTGAACA 58.765 50.000 0.00 0.00 0.00 3.18
296 308 1.812571 GCACTTGGGAATCGTGAACAT 59.187 47.619 0.00 0.00 0.00 2.71
297 309 2.414559 GCACTTGGGAATCGTGAACATG 60.415 50.000 0.00 0.00 0.00 3.21
298 310 1.812571 ACTTGGGAATCGTGAACATGC 59.187 47.619 0.00 0.00 0.00 4.06
299 311 2.086869 CTTGGGAATCGTGAACATGCT 58.913 47.619 0.00 0.00 0.00 3.79
300 312 2.198827 TGGGAATCGTGAACATGCTT 57.801 45.000 0.00 0.00 0.00 3.91
301 313 3.342377 TGGGAATCGTGAACATGCTTA 57.658 42.857 0.00 0.00 0.00 3.09
302 314 3.884895 TGGGAATCGTGAACATGCTTAT 58.115 40.909 0.00 0.00 0.00 1.73
303 315 3.627123 TGGGAATCGTGAACATGCTTATG 59.373 43.478 0.00 0.00 0.00 1.90
304 316 3.627577 GGGAATCGTGAACATGCTTATGT 59.372 43.478 0.00 0.00 36.10 2.29
305 317 4.496341 GGGAATCGTGAACATGCTTATGTG 60.496 45.833 0.00 0.00 34.56 3.21
306 318 4.332543 GGAATCGTGAACATGCTTATGTGA 59.667 41.667 0.00 0.00 34.56 3.58
307 319 4.864916 ATCGTGAACATGCTTATGTGAC 57.135 40.909 0.00 0.00 34.56 3.67
308 320 3.658709 TCGTGAACATGCTTATGTGACA 58.341 40.909 0.00 0.00 34.56 3.58
309 321 3.679502 TCGTGAACATGCTTATGTGACAG 59.320 43.478 0.00 0.00 34.56 3.51
310 322 3.679502 CGTGAACATGCTTATGTGACAGA 59.320 43.478 0.00 0.00 34.56 3.41
311 323 4.434725 CGTGAACATGCTTATGTGACAGAC 60.435 45.833 0.00 0.00 34.56 3.51
312 324 4.452114 GTGAACATGCTTATGTGACAGACA 59.548 41.667 0.00 0.00 39.53 3.41
313 325 5.049474 GTGAACATGCTTATGTGACAGACAA 60.049 40.000 0.00 0.00 38.36 3.18
314 326 5.706833 TGAACATGCTTATGTGACAGACAAT 59.293 36.000 0.00 0.00 38.36 2.71
315 327 6.207221 TGAACATGCTTATGTGACAGACAATT 59.793 34.615 0.00 0.00 38.36 2.32
316 328 7.390162 TGAACATGCTTATGTGACAGACAATTA 59.610 33.333 0.00 0.00 38.36 1.40
317 329 7.686438 ACATGCTTATGTGACAGACAATTAA 57.314 32.000 0.00 0.00 38.36 1.40
318 330 8.109705 ACATGCTTATGTGACAGACAATTAAA 57.890 30.769 0.00 0.00 38.36 1.52
319 331 8.239314 ACATGCTTATGTGACAGACAATTAAAG 58.761 33.333 0.00 0.00 38.36 1.85
320 332 7.977789 TGCTTATGTGACAGACAATTAAAGA 57.022 32.000 0.00 0.00 38.36 2.52
321 333 8.389779 TGCTTATGTGACAGACAATTAAAGAA 57.610 30.769 0.00 0.00 38.36 2.52
322 334 8.506437 TGCTTATGTGACAGACAATTAAAGAAG 58.494 33.333 0.00 0.00 38.36 2.85
323 335 8.721478 GCTTATGTGACAGACAATTAAAGAAGA 58.279 33.333 0.00 0.00 38.36 2.87
325 337 9.996554 TTATGTGACAGACAATTAAAGAAGAGA 57.003 29.630 0.00 0.00 38.36 3.10
326 338 8.908786 ATGTGACAGACAATTAAAGAAGAGAA 57.091 30.769 0.00 0.00 38.36 2.87
327 339 8.731275 TGTGACAGACAATTAAAGAAGAGAAA 57.269 30.769 0.00 0.00 0.00 2.52
328 340 9.173021 TGTGACAGACAATTAAAGAAGAGAAAA 57.827 29.630 0.00 0.00 0.00 2.29
332 344 9.971922 ACAGACAATTAAAGAAGAGAAAAATGG 57.028 29.630 0.00 0.00 0.00 3.16
333 345 9.971922 CAGACAATTAAAGAAGAGAAAAATGGT 57.028 29.630 0.00 0.00 0.00 3.55
380 392 9.542462 ACGTAACATAATAAATGTGATGCTACT 57.458 29.630 0.00 0.00 31.80 2.57
388 400 8.962884 AATAAATGTGATGCTACTATGTGTCA 57.037 30.769 0.00 0.00 0.00 3.58
389 401 9.565090 AATAAATGTGATGCTACTATGTGTCAT 57.435 29.630 0.00 0.00 0.00 3.06
390 402 6.856135 AATGTGATGCTACTATGTGTCATG 57.144 37.500 0.00 0.00 0.00 3.07
391 403 4.122046 TGTGATGCTACTATGTGTCATGC 58.878 43.478 0.00 0.00 0.00 4.06
392 404 4.122046 GTGATGCTACTATGTGTCATGCA 58.878 43.478 0.00 0.00 35.34 3.96
393 405 4.753610 GTGATGCTACTATGTGTCATGCAT 59.246 41.667 0.00 0.00 40.30 3.96
394 406 4.753107 TGATGCTACTATGTGTCATGCATG 59.247 41.667 21.07 21.07 38.93 4.06
395 407 4.405116 TGCTACTATGTGTCATGCATGA 57.595 40.909 25.42 25.42 0.00 3.07
396 408 4.964593 TGCTACTATGTGTCATGCATGAT 58.035 39.130 30.89 18.01 39.30 2.45
397 409 6.100404 TGCTACTATGTGTCATGCATGATA 57.900 37.500 30.89 25.85 39.30 2.15
398 410 6.523840 TGCTACTATGTGTCATGCATGATAA 58.476 36.000 30.89 19.84 39.30 1.75
399 411 7.163441 TGCTACTATGTGTCATGCATGATAAT 58.837 34.615 30.89 24.01 39.30 1.28
400 412 8.313292 TGCTACTATGTGTCATGCATGATAATA 58.687 33.333 30.89 23.87 39.30 0.98
401 413 9.154847 GCTACTATGTGTCATGCATGATAATAA 57.845 33.333 30.89 17.58 39.30 1.40
407 419 8.680039 TGTGTCATGCATGATAATAAATGAGA 57.320 30.769 30.89 2.41 39.30 3.27
408 420 8.562052 TGTGTCATGCATGATAATAAATGAGAC 58.438 33.333 30.89 14.97 39.30 3.36
409 421 8.019669 GTGTCATGCATGATAATAAATGAGACC 58.980 37.037 30.89 13.81 39.30 3.85
410 422 7.720515 TGTCATGCATGATAATAAATGAGACCA 59.279 33.333 30.89 16.11 39.30 4.02
411 423 8.737175 GTCATGCATGATAATAAATGAGACCAT 58.263 33.333 30.89 0.00 39.30 3.55
412 424 8.953313 TCATGCATGATAATAAATGAGACCATC 58.047 33.333 25.42 0.00 31.40 3.51
413 425 8.957466 CATGCATGATAATAAATGAGACCATCT 58.043 33.333 22.59 0.00 31.40 2.90
426 438 7.968014 ATGAGACCATCTATGATACTATGCA 57.032 36.000 0.00 0.00 0.00 3.96
427 439 7.163001 TGAGACCATCTATGATACTATGCAC 57.837 40.000 0.00 0.00 0.00 4.57
428 440 6.950619 TGAGACCATCTATGATACTATGCACT 59.049 38.462 0.00 0.00 0.00 4.40
429 441 8.109634 TGAGACCATCTATGATACTATGCACTA 58.890 37.037 0.00 0.00 0.00 2.74
430 442 9.130661 GAGACCATCTATGATACTATGCACTAT 57.869 37.037 0.00 0.00 0.00 2.12
444 456 8.624367 ACTATGCACTATAGAGGTAGTAACAG 57.376 38.462 6.78 0.00 41.10 3.16
445 457 8.438373 ACTATGCACTATAGAGGTAGTAACAGA 58.562 37.037 6.78 0.00 41.10 3.41
446 458 6.939132 TGCACTATAGAGGTAGTAACAGAC 57.061 41.667 6.78 0.00 33.29 3.51
447 459 6.660800 TGCACTATAGAGGTAGTAACAGACT 58.339 40.000 6.78 0.00 42.69 3.24
448 460 7.799081 TGCACTATAGAGGTAGTAACAGACTA 58.201 38.462 6.78 0.00 39.81 2.59
449 461 8.270030 TGCACTATAGAGGTAGTAACAGACTAA 58.730 37.037 6.78 0.00 42.43 2.24
450 462 9.287373 GCACTATAGAGGTAGTAACAGACTAAT 57.713 37.037 6.78 0.00 42.43 1.73
460 472 9.976511 GGTAGTAACAGACTAATAACATATGCA 57.023 33.333 1.58 0.00 42.43 3.96
482 494 7.769220 TGCATGTTACTAGTCTAAGTTACTCC 58.231 38.462 0.00 0.00 31.82 3.85
483 495 7.147949 TGCATGTTACTAGTCTAAGTTACTCCC 60.148 40.741 0.00 0.00 31.82 4.30
484 496 7.683945 GCATGTTACTAGTCTAAGTTACTCCCC 60.684 44.444 0.00 0.00 31.82 4.81
485 497 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
486 498 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
487 499 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
488 500 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
489 501 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
490 502 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
491 503 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
492 504 6.130569 AGTCTAAGTTACTCCCCACTATGAG 58.869 44.000 0.00 0.00 34.73 2.90
493 505 4.894114 TCTAAGTTACTCCCCACTATGAGC 59.106 45.833 0.00 0.00 31.65 4.26
494 506 3.116096 AGTTACTCCCCACTATGAGCA 57.884 47.619 0.00 0.00 31.65 4.26
495 507 3.034635 AGTTACTCCCCACTATGAGCAG 58.965 50.000 0.00 0.00 31.65 4.24
496 508 1.414158 TACTCCCCACTATGAGCAGC 58.586 55.000 0.00 0.00 31.65 5.25
497 509 1.341156 ACTCCCCACTATGAGCAGCC 61.341 60.000 0.00 0.00 31.65 4.85
522 534 7.072581 CCTTAGGGTATTCTTCTCCCACTAATT 59.927 40.741 0.00 0.00 43.31 1.40
843 860 2.360980 CCTCCTGACCCTCGTCCT 59.639 66.667 0.00 0.00 38.32 3.85
1089 1106 2.429930 CCAGGAAAGTGGCGGACA 59.570 61.111 0.00 0.00 0.00 4.02
1210 1227 2.115291 GCCGGGATGGTTGCTCTTC 61.115 63.158 2.18 0.00 41.21 2.87
1215 1232 0.391661 GGATGGTTGCTCTTCTGCGA 60.392 55.000 0.00 0.00 35.36 5.10
1257 1274 2.513897 GGCGATCGGTTGGGAAGG 60.514 66.667 18.30 0.00 0.00 3.46
1401 1418 4.039609 TCACGATATTGGACAGATCAGCAT 59.960 41.667 0.00 0.00 0.00 3.79
1406 1423 3.657398 TTGGACAGATCAGCATGGAAT 57.343 42.857 0.00 0.00 36.16 3.01
1434 1451 0.394216 TTGCTCAACTGGTGCTGTGT 60.394 50.000 0.00 0.00 36.94 3.72
1476 1493 4.663334 AGATACCATCCGTGCTATGACTA 58.337 43.478 0.00 0.00 0.00 2.59
1628 1645 5.698832 CATGATGAAACGAGTTGGCTTTAA 58.301 37.500 0.00 0.00 0.00 1.52
1653 1670 5.013568 TGTCTGACGTTTGTTTCCTCTTA 57.986 39.130 2.98 0.00 0.00 2.10
1660 1677 4.885325 ACGTTTGTTTCCTCTTATGGTGTT 59.115 37.500 0.00 0.00 0.00 3.32
1661 1678 5.212194 CGTTTGTTTCCTCTTATGGTGTTG 58.788 41.667 0.00 0.00 0.00 3.33
1662 1679 4.846779 TTGTTTCCTCTTATGGTGTTGC 57.153 40.909 0.00 0.00 0.00 4.17
1663 1680 4.098914 TGTTTCCTCTTATGGTGTTGCT 57.901 40.909 0.00 0.00 0.00 3.91
1664 1681 3.820467 TGTTTCCTCTTATGGTGTTGCTG 59.180 43.478 0.00 0.00 0.00 4.41
1665 1682 4.072131 GTTTCCTCTTATGGTGTTGCTGA 58.928 43.478 0.00 0.00 0.00 4.26
1666 1683 4.365514 TTCCTCTTATGGTGTTGCTGAA 57.634 40.909 0.00 0.00 0.00 3.02
1877 2085 6.543831 CCATAGTCTTGGTTTCCAGGAATAAG 59.456 42.308 1.58 8.59 41.83 1.73
1997 2205 2.895242 ATGGCTCAAGAGAAAAGGCT 57.105 45.000 0.32 0.00 36.60 4.58
2182 2390 9.379791 GTCAGTTGCTAGGTTAGTGTATAAATT 57.620 33.333 0.00 0.00 0.00 1.82
2256 2464 9.828852 CAAAATTGTTCCATCAATGTAAATTGG 57.171 29.630 5.78 0.00 37.96 3.16
2278 2486 0.743345 GGTGTTGACCCGTAGCCATC 60.743 60.000 0.00 0.00 36.03 3.51
2322 2530 7.510001 TGGAATGGAAATTCTATGCATACCATT 59.490 33.333 25.57 25.57 45.46 3.16
2518 2726 9.747898 TGTCCTATCATTACCAAAATTTGTACT 57.252 29.630 4.92 0.00 0.00 2.73
2538 2746 5.408880 ACTAGAGTCAAAAGGCCTTACTC 57.591 43.478 28.56 28.56 37.44 2.59
2591 2799 9.769093 CGGTTAATTAAAGTAAAATCAGGTGAG 57.231 33.333 0.00 0.00 0.00 3.51
2617 2825 5.130311 ACCTACATAACACACATAGCCATCA 59.870 40.000 0.00 0.00 0.00 3.07
2688 2896 0.876777 TGTTGCGGAAACATCGTCGT 60.877 50.000 0.00 0.00 43.96 4.34
2706 2914 1.534729 GTGGTGGTCCAGGAAACATC 58.465 55.000 0.00 0.00 45.24 3.06
2707 2915 1.144691 TGGTGGTCCAGGAAACATCA 58.855 50.000 4.56 4.56 39.03 3.07
2708 2916 1.710244 TGGTGGTCCAGGAAACATCAT 59.290 47.619 4.56 0.00 39.03 2.45
2750 2958 7.327975 TCCTTGATCTAGCGATTTAAACTTCA 58.672 34.615 0.00 0.00 0.00 3.02
2751 2959 7.277981 TCCTTGATCTAGCGATTTAAACTTCAC 59.722 37.037 0.00 0.00 0.00 3.18
2752 2960 7.278868 CCTTGATCTAGCGATTTAAACTTCACT 59.721 37.037 0.00 0.00 0.00 3.41
2753 2961 7.525688 TGATCTAGCGATTTAAACTTCACTG 57.474 36.000 0.00 0.00 0.00 3.66
2754 2962 5.779806 TCTAGCGATTTAAACTTCACTGC 57.220 39.130 0.00 0.00 0.00 4.40
2755 2963 5.234752 TCTAGCGATTTAAACTTCACTGCA 58.765 37.500 0.00 0.00 0.00 4.41
2756 2964 4.829064 AGCGATTTAAACTTCACTGCAA 57.171 36.364 0.00 0.00 0.00 4.08
2757 2965 5.181690 AGCGATTTAAACTTCACTGCAAA 57.818 34.783 0.00 0.00 0.00 3.68
2758 2966 5.587289 AGCGATTTAAACTTCACTGCAAAA 58.413 33.333 0.00 0.00 0.00 2.44
2759 2967 6.039616 AGCGATTTAAACTTCACTGCAAAAA 58.960 32.000 0.00 0.00 0.00 1.94
2760 2968 6.701400 AGCGATTTAAACTTCACTGCAAAAAT 59.299 30.769 0.00 0.00 0.00 1.82
2761 2969 6.787043 GCGATTTAAACTTCACTGCAAAAATG 59.213 34.615 0.00 0.00 0.00 2.32
2762 2970 7.306515 GCGATTTAAACTTCACTGCAAAAATGA 60.307 33.333 0.00 0.00 0.00 2.57
2763 2971 8.538856 CGATTTAAACTTCACTGCAAAAATGAA 58.461 29.630 0.00 0.00 0.00 2.57
2957 3165 4.891516 GCGAGCTTCATAGAAGAAAGTTG 58.108 43.478 10.72 0.00 0.00 3.16
2958 3166 4.726306 GCGAGCTTCATAGAAGAAAGTTGC 60.726 45.833 10.72 3.90 0.00 4.17
2959 3167 4.389992 CGAGCTTCATAGAAGAAAGTTGCA 59.610 41.667 10.72 0.00 0.00 4.08
2960 3168 5.106948 CGAGCTTCATAGAAGAAAGTTGCAA 60.107 40.000 10.72 0.00 0.00 4.08
3119 3327 1.757118 CACTACCTCGATGTCCACCAT 59.243 52.381 0.00 0.00 36.13 3.55
3136 3344 1.284785 CCATCCCATACCAACACACCT 59.715 52.381 0.00 0.00 0.00 4.00
3159 3367 0.475044 ACCCTACCTTTTGCCGTTCA 59.525 50.000 0.00 0.00 0.00 3.18
3195 3403 3.423154 GCCGAAGCGAACCCACAG 61.423 66.667 0.00 0.00 0.00 3.66
3205 3413 3.286694 AACCCACAGCGCCATCCAT 62.287 57.895 2.29 0.00 0.00 3.41
3273 3481 1.439365 GCAAGCACAAGAAGCGTCG 60.439 57.895 0.00 0.00 37.01 5.12
3302 3510 1.134753 TCACAGCTGTGCCAAACTTTG 59.865 47.619 36.76 13.93 45.25 2.77
3303 3511 1.135024 CACAGCTGTGCCAAACTTTGT 60.135 47.619 32.39 0.00 39.39 2.83
3304 3512 1.135024 ACAGCTGTGCCAAACTTTGTG 60.135 47.619 20.97 0.00 0.00 3.33
3305 3513 1.135024 CAGCTGTGCCAAACTTTGTGT 60.135 47.619 5.25 0.00 0.00 3.72
3306 3514 1.134946 AGCTGTGCCAAACTTTGTGTC 59.865 47.619 0.88 0.00 0.00 3.67
3307 3515 1.135141 GCTGTGCCAAACTTTGTGTCA 60.135 47.619 0.88 0.00 0.00 3.58
3308 3516 2.529151 CTGTGCCAAACTTTGTGTCAC 58.471 47.619 0.00 0.00 0.00 3.67
3309 3517 2.164219 CTGTGCCAAACTTTGTGTCACT 59.836 45.455 4.27 0.00 0.00 3.41
3310 3518 3.348119 TGTGCCAAACTTTGTGTCACTA 58.652 40.909 4.27 0.00 0.00 2.74
3311 3519 3.759086 TGTGCCAAACTTTGTGTCACTAA 59.241 39.130 4.27 1.94 0.00 2.24
3312 3520 4.102649 GTGCCAAACTTTGTGTCACTAAC 58.897 43.478 4.27 0.00 0.00 2.34
3313 3521 3.129638 TGCCAAACTTTGTGTCACTAACC 59.870 43.478 4.27 0.00 0.00 2.85
3314 3522 3.790789 GCCAAACTTTGTGTCACTAACCG 60.791 47.826 4.27 0.00 0.00 4.44
3315 3523 3.375922 CCAAACTTTGTGTCACTAACCGT 59.624 43.478 4.27 0.00 0.00 4.83
3316 3524 4.339429 CAAACTTTGTGTCACTAACCGTG 58.661 43.478 4.27 0.00 45.18 4.94
3317 3525 1.937899 ACTTTGTGTCACTAACCGTGC 59.062 47.619 4.27 0.00 43.46 5.34
3318 3526 1.263217 CTTTGTGTCACTAACCGTGCC 59.737 52.381 4.27 0.00 43.46 5.01
3319 3527 0.178301 TTGTGTCACTAACCGTGCCA 59.822 50.000 4.27 0.00 43.46 4.92
3320 3528 0.178301 TGTGTCACTAACCGTGCCAA 59.822 50.000 4.27 0.00 43.46 4.52
3321 3529 1.301423 GTGTCACTAACCGTGCCAAA 58.699 50.000 0.00 0.00 43.46 3.28
3322 3530 1.003223 GTGTCACTAACCGTGCCAAAC 60.003 52.381 0.00 0.00 43.46 2.93
3323 3531 1.134340 TGTCACTAACCGTGCCAAACT 60.134 47.619 0.00 0.00 43.46 2.66
3324 3532 1.944709 GTCACTAACCGTGCCAAACTT 59.055 47.619 0.00 0.00 43.46 2.66
3325 3533 2.356695 GTCACTAACCGTGCCAAACTTT 59.643 45.455 0.00 0.00 43.46 2.66
3645 3853 2.239907 GCTACCTGGAATTGGAGGAAGT 59.760 50.000 0.00 0.00 33.16 3.01
3668 3876 2.072874 ATCCTGCAGGCACTTGTGGT 62.073 55.000 28.91 0.00 34.60 4.16
3804 4012 7.049754 GGGAGTTTCTGTTATTACCGGATTAA 58.950 38.462 9.46 0.00 0.00 1.40
4237 4446 4.946157 GCATATTCTGTGCTATAGGGCATT 59.054 41.667 1.04 0.00 44.34 3.56
4289 4499 6.435292 AGTTGAGGTTTTAGTCAGGTGTAT 57.565 37.500 0.00 0.00 0.00 2.29
4324 4534 4.488126 TTGCTTGAAGTCTTATGTGTGC 57.512 40.909 0.00 0.00 0.00 4.57
4329 4539 5.506317 GCTTGAAGTCTTATGTGTGCAACTT 60.506 40.000 0.00 0.00 38.04 2.66
4389 4599 7.892778 TTTTGAATGATGAATGGTTGACATG 57.107 32.000 0.00 0.00 40.44 3.21
4405 4615 2.343484 CATGACCACATGGCAGATCT 57.657 50.000 0.00 0.00 46.95 2.75
4406 4616 3.480505 CATGACCACATGGCAGATCTA 57.519 47.619 0.00 0.00 46.95 1.98
4893 5103 3.138304 TGCCATTATAGCCACTTAAGCG 58.862 45.455 1.29 0.00 34.64 4.68
4926 5136 4.883006 TCAAATACCGTACCCCTATTTTGC 59.117 41.667 0.00 0.00 0.00 3.68
4950 5160 3.013921 TGTCTGTTCCAAGGACACAAAC 58.986 45.455 0.00 0.00 35.44 2.93
5027 5237 2.357517 CTTCCCGCAGTTCGCACT 60.358 61.111 0.00 0.00 42.60 4.40
5038 5248 2.036571 TTCGCACTCAGCAGCATGG 61.037 57.895 0.00 0.00 46.13 3.66
5142 5352 1.677633 GGCCACAACGCCCACTATT 60.678 57.895 0.00 0.00 43.66 1.73
5155 5365 1.670811 CCACTATTGCTGGCTTTACGG 59.329 52.381 0.00 0.00 0.00 4.02
5218 5428 3.081409 CTTCGTCCCGGTCCCCAT 61.081 66.667 0.00 0.00 0.00 4.00
5237 5447 0.998928 TGGGCTTGTACATGTCCCAT 59.001 50.000 26.11 0.00 41.71 4.00
5267 5477 2.271800 CGGAAGCTGCTTATCGAGTTT 58.728 47.619 23.98 0.00 0.00 2.66
5329 5539 4.803908 GTGTAGCAGGGCCTGGGC 62.804 72.222 33.43 21.14 41.06 5.36
5346 5556 2.425592 CAGCCCAAGACCACGACA 59.574 61.111 0.00 0.00 0.00 4.35
5354 5564 3.936203 GACCACGACACTGCCCCA 61.936 66.667 0.00 0.00 0.00 4.96
5379 5589 1.204941 GTACCACGATGCTCTCAAGGT 59.795 52.381 0.00 0.00 35.50 3.50
5391 5601 1.385347 TCAAGGTGGTGGAGGTGGT 60.385 57.895 0.00 0.00 0.00 4.16
5414 5624 2.032528 CAGCCAAGCCGACCAAGA 59.967 61.111 0.00 0.00 0.00 3.02
5504 5715 2.398554 ATGTGTCGCGCCAACATCC 61.399 57.895 12.77 3.06 28.38 3.51
5523 5734 4.941609 CGGCTCATTGCTGTACCT 57.058 55.556 0.00 0.00 42.87 3.08
5524 5735 2.387309 CGGCTCATTGCTGTACCTG 58.613 57.895 0.00 0.00 42.87 4.00
5525 5736 0.391661 CGGCTCATTGCTGTACCTGT 60.392 55.000 0.00 0.00 42.87 4.00
5526 5737 1.134818 CGGCTCATTGCTGTACCTGTA 60.135 52.381 0.00 0.00 42.87 2.74
5527 5738 2.280628 GGCTCATTGCTGTACCTGTAC 58.719 52.381 0.45 0.45 42.39 2.90
5550 5761 2.184020 TACCATGGCAAGCTCGCACT 62.184 55.000 13.04 0.00 0.00 4.40
5564 5775 3.352447 GCACTCATGCGCTCTCTAA 57.648 52.632 9.73 0.00 43.33 2.10
5577 5788 4.440250 GCGCTCTCTAACAAGATGGACTTA 60.440 45.833 0.00 0.00 37.03 2.24
5599 5810 2.954753 GAGTTCTGCAACGCGTGGG 61.955 63.158 14.98 10.06 37.61 4.61
5736 5947 2.642171 ACTGGATCCTACCAACTCCA 57.358 50.000 14.23 0.00 39.59 3.86
5843 6054 0.395724 TAGGAGCCTCATCGTGCTGA 60.396 55.000 0.00 0.00 38.11 4.26
5868 6079 3.003763 GGTCGAGGAGCCCAACCT 61.004 66.667 0.00 0.00 40.80 3.50
5962 6180 7.043125 CGAAGAACTAAACGATCATCACATCAT 60.043 37.037 0.00 0.00 0.00 2.45
6074 6292 8.225416 AGAGAGTGGGAAGTTATTTAGGTTTTT 58.775 33.333 0.00 0.00 0.00 1.94
6209 7178 8.597167 CATCTATAGATGTATTTGGAAGGTCCA 58.403 37.037 27.83 0.00 44.43 4.02
6226 7195 4.102996 AGGTCCAGTGGCATTTTTCAAAAT 59.897 37.500 3.51 0.00 39.07 1.82
6236 7205 9.558648 GTGGCATTTTTCAAAATATGGAAATTC 57.441 29.630 0.00 0.00 36.39 2.17
6885 7855 6.078479 GTGGTCTATCATGTATCGAACTACG 58.922 44.000 0.00 0.00 44.09 3.51
6913 7883 6.643770 AGAAATGCACATTTTAGTTGCTTCTG 59.356 34.615 9.81 0.00 40.77 3.02
7092 8062 5.819379 ACTGGATATGATGACACACATGAAC 59.181 40.000 0.00 0.00 39.56 3.18
7558 8576 2.069165 AACCCTGGCTCACCCTTCAC 62.069 60.000 0.00 0.00 33.59 3.18
7559 8577 2.352805 CCTGGCTCACCCTTCACC 59.647 66.667 0.00 0.00 33.59 4.02
7560 8578 2.352805 CTGGCTCACCCTTCACCC 59.647 66.667 0.00 0.00 33.59 4.61
7561 8579 2.121963 TGGCTCACCCTTCACCCT 60.122 61.111 0.00 0.00 33.59 4.34
7562 8580 1.774217 TGGCTCACCCTTCACCCTT 60.774 57.895 0.00 0.00 33.59 3.95
7563 8581 1.002011 GGCTCACCCTTCACCCTTC 60.002 63.158 0.00 0.00 0.00 3.46
7564 8582 1.761174 GCTCACCCTTCACCCTTCA 59.239 57.895 0.00 0.00 0.00 3.02
7863 8918 6.183360 TGGTTTAGCACGATGATAATTGCATT 60.183 34.615 0.00 0.00 37.44 3.56
7969 9026 3.118629 TGCGCTCTTCATATCTGTTCCTT 60.119 43.478 9.73 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.107133 CGTCTTTTGTCGTCACCCTTATAT 58.893 41.667 0.00 0.00 0.00 0.86
59 60 2.592194 TCGAATGACAAGTACTGACGC 58.408 47.619 0.00 0.00 0.00 5.19
70 71 8.518702 TCAAAATTATGAAACCATCGAATGACA 58.481 29.630 0.00 0.00 0.00 3.58
237 249 0.550914 CCCACTATGGCCAGCCTAAA 59.449 55.000 13.05 0.00 35.79 1.85
238 250 1.352622 CCCCACTATGGCCAGCCTAA 61.353 60.000 13.05 0.00 35.79 2.69
239 251 1.770110 CCCCACTATGGCCAGCCTA 60.770 63.158 13.05 0.00 35.79 3.93
240 252 2.561378 TACCCCACTATGGCCAGCCT 62.561 60.000 13.05 0.00 35.79 4.58
241 253 1.641552 TTACCCCACTATGGCCAGCC 61.642 60.000 13.05 0.38 35.79 4.85
242 254 0.465642 GTTACCCCACTATGGCCAGC 60.466 60.000 13.05 0.00 35.79 4.85
243 255 0.916086 TGTTACCCCACTATGGCCAG 59.084 55.000 13.05 0.00 35.79 4.85
244 256 1.602440 ATGTTACCCCACTATGGCCA 58.398 50.000 8.56 8.56 35.79 5.36
245 257 3.137728 ACTTATGTTACCCCACTATGGCC 59.862 47.826 0.00 0.00 35.79 5.36
246 258 4.432980 ACTTATGTTACCCCACTATGGC 57.567 45.455 0.00 0.00 35.79 4.40
247 259 6.742559 ACTACTTATGTTACCCCACTATGG 57.257 41.667 0.00 0.00 37.25 2.74
248 260 9.085645 TGATACTACTTATGTTACCCCACTATG 57.914 37.037 0.00 0.00 0.00 2.23
249 261 9.839185 ATGATACTACTTATGTTACCCCACTAT 57.161 33.333 0.00 0.00 0.00 2.12
250 262 9.085645 CATGATACTACTTATGTTACCCCACTA 57.914 37.037 0.00 0.00 0.00 2.74
251 263 7.472945 GCATGATACTACTTATGTTACCCCACT 60.473 40.741 0.00 0.00 0.00 4.00
252 264 6.649557 GCATGATACTACTTATGTTACCCCAC 59.350 42.308 0.00 0.00 0.00 4.61
253 265 6.327887 TGCATGATACTACTTATGTTACCCCA 59.672 38.462 0.00 0.00 0.00 4.96
254 266 6.649557 GTGCATGATACTACTTATGTTACCCC 59.350 42.308 0.00 0.00 0.00 4.95
255 267 7.442656 AGTGCATGATACTACTTATGTTACCC 58.557 38.462 0.00 0.00 0.00 3.69
256 268 8.765219 CAAGTGCATGATACTACTTATGTTACC 58.235 37.037 0.00 0.00 32.53 2.85
257 269 8.765219 CCAAGTGCATGATACTACTTATGTTAC 58.235 37.037 0.00 0.00 32.53 2.50
258 270 7.931407 CCCAAGTGCATGATACTACTTATGTTA 59.069 37.037 0.00 0.00 32.53 2.41
259 271 6.767902 CCCAAGTGCATGATACTACTTATGTT 59.232 38.462 0.00 0.00 32.53 2.71
260 272 6.099701 TCCCAAGTGCATGATACTACTTATGT 59.900 38.462 0.00 0.00 32.53 2.29
261 273 6.524734 TCCCAAGTGCATGATACTACTTATG 58.475 40.000 0.00 0.00 32.53 1.90
262 274 6.747414 TCCCAAGTGCATGATACTACTTAT 57.253 37.500 0.00 0.00 32.53 1.73
263 275 6.553953 TTCCCAAGTGCATGATACTACTTA 57.446 37.500 0.00 0.00 32.53 2.24
264 276 5.435686 TTCCCAAGTGCATGATACTACTT 57.564 39.130 0.00 0.00 33.94 2.24
265 277 5.615289 GATTCCCAAGTGCATGATACTACT 58.385 41.667 0.00 0.00 0.00 2.57
266 278 4.449068 CGATTCCCAAGTGCATGATACTAC 59.551 45.833 0.00 0.00 0.00 2.73
267 279 4.100963 ACGATTCCCAAGTGCATGATACTA 59.899 41.667 0.00 0.00 0.00 1.82
268 280 3.118261 ACGATTCCCAAGTGCATGATACT 60.118 43.478 0.00 0.00 0.00 2.12
269 281 3.002656 CACGATTCCCAAGTGCATGATAC 59.997 47.826 0.00 0.00 0.00 2.24
270 282 3.118445 TCACGATTCCCAAGTGCATGATA 60.118 43.478 0.00 0.00 35.97 2.15
271 283 2.019249 CACGATTCCCAAGTGCATGAT 58.981 47.619 0.00 0.00 0.00 2.45
272 284 1.003003 TCACGATTCCCAAGTGCATGA 59.997 47.619 0.00 0.00 35.97 3.07
273 285 1.452110 TCACGATTCCCAAGTGCATG 58.548 50.000 0.00 0.00 35.97 4.06
274 286 1.812571 GTTCACGATTCCCAAGTGCAT 59.187 47.619 0.00 0.00 35.97 3.96
275 287 1.234821 GTTCACGATTCCCAAGTGCA 58.765 50.000 0.00 0.00 35.97 4.57
276 288 1.234821 TGTTCACGATTCCCAAGTGC 58.765 50.000 0.00 0.00 35.97 4.40
277 289 2.414559 GCATGTTCACGATTCCCAAGTG 60.415 50.000 0.00 0.00 37.24 3.16
278 290 1.812571 GCATGTTCACGATTCCCAAGT 59.187 47.619 0.00 0.00 0.00 3.16
279 291 2.086869 AGCATGTTCACGATTCCCAAG 58.913 47.619 0.00 0.00 0.00 3.61
280 292 2.198827 AGCATGTTCACGATTCCCAA 57.801 45.000 0.00 0.00 0.00 4.12
281 293 2.198827 AAGCATGTTCACGATTCCCA 57.801 45.000 0.00 0.00 0.00 4.37
282 294 3.627577 ACATAAGCATGTTCACGATTCCC 59.372 43.478 0.00 0.00 42.98 3.97
283 295 4.332543 TCACATAAGCATGTTCACGATTCC 59.667 41.667 0.00 0.00 42.98 3.01
284 296 5.163864 TGTCACATAAGCATGTTCACGATTC 60.164 40.000 0.00 0.00 42.98 2.52
285 297 4.694982 TGTCACATAAGCATGTTCACGATT 59.305 37.500 0.00 0.00 42.98 3.34
286 298 4.252878 TGTCACATAAGCATGTTCACGAT 58.747 39.130 0.00 0.00 42.98 3.73
287 299 3.658709 TGTCACATAAGCATGTTCACGA 58.341 40.909 0.00 0.00 42.98 4.35
288 300 3.679502 TCTGTCACATAAGCATGTTCACG 59.320 43.478 0.00 0.00 42.98 4.35
289 301 4.452114 TGTCTGTCACATAAGCATGTTCAC 59.548 41.667 0.00 0.00 42.98 3.18
290 302 4.640364 TGTCTGTCACATAAGCATGTTCA 58.360 39.130 0.00 0.00 42.98 3.18
291 303 5.611796 TTGTCTGTCACATAAGCATGTTC 57.388 39.130 0.00 0.00 42.98 3.18
292 304 6.579666 AATTGTCTGTCACATAAGCATGTT 57.420 33.333 0.00 0.00 42.98 2.71
293 305 7.686438 TTAATTGTCTGTCACATAAGCATGT 57.314 32.000 0.00 0.00 46.58 3.21
294 306 8.453320 TCTTTAATTGTCTGTCACATAAGCATG 58.547 33.333 0.00 0.00 33.90 4.06
295 307 8.565896 TCTTTAATTGTCTGTCACATAAGCAT 57.434 30.769 0.00 0.00 33.90 3.79
296 308 7.977789 TCTTTAATTGTCTGTCACATAAGCA 57.022 32.000 0.00 0.00 33.90 3.91
297 309 8.721478 TCTTCTTTAATTGTCTGTCACATAAGC 58.279 33.333 0.00 0.00 33.90 3.09
299 311 9.996554 TCTCTTCTTTAATTGTCTGTCACATAA 57.003 29.630 0.00 0.00 33.90 1.90
300 312 9.996554 TTCTCTTCTTTAATTGTCTGTCACATA 57.003 29.630 0.00 0.00 33.90 2.29
301 313 8.908786 TTCTCTTCTTTAATTGTCTGTCACAT 57.091 30.769 0.00 0.00 33.90 3.21
302 314 8.731275 TTTCTCTTCTTTAATTGTCTGTCACA 57.269 30.769 0.00 0.00 0.00 3.58
306 318 9.971922 CCATTTTTCTCTTCTTTAATTGTCTGT 57.028 29.630 0.00 0.00 0.00 3.41
307 319 9.971922 ACCATTTTTCTCTTCTTTAATTGTCTG 57.028 29.630 0.00 0.00 0.00 3.51
354 366 9.542462 AGTAGCATCACATTTATTATGTTACGT 57.458 29.630 0.00 0.00 39.53 3.57
363 375 8.962884 TGACACATAGTAGCATCACATTTATT 57.037 30.769 0.00 0.00 0.00 1.40
364 376 8.996271 CATGACACATAGTAGCATCACATTTAT 58.004 33.333 0.00 0.00 0.00 1.40
365 377 7.041848 GCATGACACATAGTAGCATCACATTTA 60.042 37.037 0.00 0.00 0.00 1.40
366 378 6.238566 GCATGACACATAGTAGCATCACATTT 60.239 38.462 0.00 0.00 0.00 2.32
367 379 5.237996 GCATGACACATAGTAGCATCACATT 59.762 40.000 0.00 0.00 0.00 2.71
368 380 4.753610 GCATGACACATAGTAGCATCACAT 59.246 41.667 0.00 0.00 0.00 3.21
369 381 4.122046 GCATGACACATAGTAGCATCACA 58.878 43.478 0.00 0.00 0.00 3.58
370 382 4.122046 TGCATGACACATAGTAGCATCAC 58.878 43.478 0.00 0.00 30.65 3.06
371 383 4.405116 TGCATGACACATAGTAGCATCA 57.595 40.909 0.00 0.00 30.65 3.07
372 384 4.992951 TCATGCATGACACATAGTAGCATC 59.007 41.667 25.42 0.00 39.67 3.91
373 385 4.964593 TCATGCATGACACATAGTAGCAT 58.035 39.130 25.42 0.00 41.24 3.79
374 386 4.405116 TCATGCATGACACATAGTAGCA 57.595 40.909 25.42 0.00 37.13 3.49
375 387 7.606858 ATTATCATGCATGACACATAGTAGC 57.393 36.000 30.92 0.00 40.03 3.58
381 393 9.292195 TCTCATTTATTATCATGCATGACACAT 57.708 29.630 30.92 22.66 40.03 3.21
382 394 8.562052 GTCTCATTTATTATCATGCATGACACA 58.438 33.333 30.92 17.76 40.03 3.72
383 395 8.019669 GGTCTCATTTATTATCATGCATGACAC 58.980 37.037 30.92 12.09 40.03 3.67
384 396 7.720515 TGGTCTCATTTATTATCATGCATGACA 59.279 33.333 30.92 18.55 40.03 3.58
385 397 8.102800 TGGTCTCATTTATTATCATGCATGAC 57.897 34.615 30.92 13.79 40.03 3.06
386 398 8.873186 ATGGTCTCATTTATTATCATGCATGA 57.127 30.769 30.47 30.47 41.70 3.07
387 399 8.957466 AGATGGTCTCATTTATTATCATGCATG 58.043 33.333 21.07 21.07 32.98 4.06
400 412 8.819845 TGCATAGTATCATAGATGGTCTCATTT 58.180 33.333 0.00 0.00 32.98 2.32
401 413 8.256605 GTGCATAGTATCATAGATGGTCTCATT 58.743 37.037 0.00 0.00 32.98 2.57
402 414 7.618907 AGTGCATAGTATCATAGATGGTCTCAT 59.381 37.037 0.00 0.00 36.09 2.90
403 415 6.950619 AGTGCATAGTATCATAGATGGTCTCA 59.049 38.462 0.00 0.00 0.00 3.27
404 416 7.403312 AGTGCATAGTATCATAGATGGTCTC 57.597 40.000 0.00 0.00 0.00 3.36
418 430 9.722184 CTGTTACTACCTCTATAGTGCATAGTA 57.278 37.037 14.26 14.26 38.26 1.82
419 431 8.438373 TCTGTTACTACCTCTATAGTGCATAGT 58.562 37.037 15.54 15.54 38.26 2.12
420 432 8.723311 GTCTGTTACTACCTCTATAGTGCATAG 58.277 40.741 0.00 5.04 36.09 2.23
421 433 8.438373 AGTCTGTTACTACCTCTATAGTGCATA 58.562 37.037 0.00 0.00 36.36 3.14
422 434 7.291566 AGTCTGTTACTACCTCTATAGTGCAT 58.708 38.462 0.00 0.00 36.36 3.96
423 435 6.660800 AGTCTGTTACTACCTCTATAGTGCA 58.339 40.000 0.00 0.00 36.36 4.57
424 436 8.674263 TTAGTCTGTTACTACCTCTATAGTGC 57.326 38.462 0.00 0.00 40.48 4.40
434 446 9.976511 TGCATATGTTATTAGTCTGTTACTACC 57.023 33.333 4.29 0.00 40.48 3.18
456 468 8.414778 GGAGTAACTTAGACTAGTAACATGCAT 58.585 37.037 0.00 0.00 0.00 3.96
457 469 7.147949 GGGAGTAACTTAGACTAGTAACATGCA 60.148 40.741 0.00 0.00 0.00 3.96
458 470 7.201835 GGGAGTAACTTAGACTAGTAACATGC 58.798 42.308 0.00 0.00 0.00 4.06
459 471 7.341256 TGGGGAGTAACTTAGACTAGTAACATG 59.659 40.741 0.00 0.00 0.00 3.21
460 472 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
461 473 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
462 474 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
463 475 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
464 476 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
465 477 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
466 478 7.288560 TCATAGTGGGGAGTAACTTAGACTAG 58.711 42.308 0.00 0.00 0.00 2.57
467 479 7.217028 TCATAGTGGGGAGTAACTTAGACTA 57.783 40.000 0.00 0.00 0.00 2.59
468 480 6.088541 TCATAGTGGGGAGTAACTTAGACT 57.911 41.667 0.00 0.00 0.00 3.24
469 481 5.221283 GCTCATAGTGGGGAGTAACTTAGAC 60.221 48.000 0.00 0.00 33.66 2.59
470 482 4.894114 GCTCATAGTGGGGAGTAACTTAGA 59.106 45.833 0.00 0.00 33.66 2.10
471 483 4.649674 TGCTCATAGTGGGGAGTAACTTAG 59.350 45.833 0.00 0.00 33.66 2.18
472 484 4.616553 TGCTCATAGTGGGGAGTAACTTA 58.383 43.478 0.00 0.00 33.66 2.24
473 485 3.450904 TGCTCATAGTGGGGAGTAACTT 58.549 45.455 0.00 0.00 33.66 2.66
474 486 3.034635 CTGCTCATAGTGGGGAGTAACT 58.965 50.000 0.00 0.00 31.02 2.24
475 487 2.483889 GCTGCTCATAGTGGGGAGTAAC 60.484 54.545 0.37 0.00 38.69 2.50
476 488 1.762957 GCTGCTCATAGTGGGGAGTAA 59.237 52.381 0.37 0.00 38.69 2.24
477 489 1.414158 GCTGCTCATAGTGGGGAGTA 58.586 55.000 0.37 0.00 38.69 2.59
478 490 1.341156 GGCTGCTCATAGTGGGGAGT 61.341 60.000 0.00 0.00 38.69 3.85
479 491 1.053264 AGGCTGCTCATAGTGGGGAG 61.053 60.000 0.00 0.00 39.53 4.30
480 492 0.621571 AAGGCTGCTCATAGTGGGGA 60.622 55.000 0.00 0.00 0.00 4.81
481 493 1.071385 CTAAGGCTGCTCATAGTGGGG 59.929 57.143 0.00 0.00 0.00 4.96
482 494 1.071385 CCTAAGGCTGCTCATAGTGGG 59.929 57.143 0.00 0.00 0.00 4.61
483 495 1.071385 CCCTAAGGCTGCTCATAGTGG 59.929 57.143 0.00 1.06 0.00 4.00
484 496 1.765314 ACCCTAAGGCTGCTCATAGTG 59.235 52.381 0.00 0.00 36.11 2.74
485 497 2.182516 ACCCTAAGGCTGCTCATAGT 57.817 50.000 0.00 0.00 36.11 2.12
486 498 4.530161 AGAATACCCTAAGGCTGCTCATAG 59.470 45.833 0.00 0.08 36.11 2.23
487 499 4.493618 AGAATACCCTAAGGCTGCTCATA 58.506 43.478 0.00 0.00 36.11 2.15
488 500 3.321950 AGAATACCCTAAGGCTGCTCAT 58.678 45.455 0.00 0.00 36.11 2.90
489 501 2.764269 AGAATACCCTAAGGCTGCTCA 58.236 47.619 0.00 0.00 36.11 4.26
490 502 3.389656 AGAAGAATACCCTAAGGCTGCTC 59.610 47.826 0.00 0.00 36.11 4.26
491 503 3.388913 AGAAGAATACCCTAAGGCTGCT 58.611 45.455 0.00 0.00 36.11 4.24
492 504 3.495276 GGAGAAGAATACCCTAAGGCTGC 60.495 52.174 0.00 0.00 36.11 5.25
493 505 3.071747 GGGAGAAGAATACCCTAAGGCTG 59.928 52.174 0.00 0.00 40.39 4.85
494 506 3.311402 TGGGAGAAGAATACCCTAAGGCT 60.311 47.826 0.00 0.00 43.59 4.58
495 507 3.046374 TGGGAGAAGAATACCCTAAGGC 58.954 50.000 0.00 0.00 43.59 4.35
496 508 4.299485 AGTGGGAGAAGAATACCCTAAGG 58.701 47.826 0.00 0.00 43.59 2.69
497 509 7.619512 ATTAGTGGGAGAAGAATACCCTAAG 57.380 40.000 0.00 0.00 43.59 2.18
522 534 3.445987 TCTGTGTATGTATGTGGGACCA 58.554 45.455 0.00 0.00 0.00 4.02
916 933 2.033602 TCTCGTCTCGTCCTGCCA 59.966 61.111 0.00 0.00 0.00 4.92
1074 1091 0.322546 GGATTGTCCGCCACTTTCCT 60.323 55.000 0.00 0.00 0.00 3.36
1210 1227 1.689959 GCCACAATTTTCAGTCGCAG 58.310 50.000 0.00 0.00 0.00 5.18
1215 1232 0.591170 CCGTCGCCACAATTTTCAGT 59.409 50.000 0.00 0.00 0.00 3.41
1257 1274 0.102481 TAGACGCGAGATTTCCTGCC 59.898 55.000 15.93 0.00 0.00 4.85
1401 1418 4.074970 GTTGAGCAAAGGAGAGAATTCCA 58.925 43.478 0.65 0.00 39.84 3.53
1406 1423 2.439507 ACCAGTTGAGCAAAGGAGAGAA 59.560 45.455 9.20 0.00 0.00 2.87
1476 1493 3.963129 TCGAGAATTAATGGGGCAACTT 58.037 40.909 0.00 0.00 0.00 2.66
1628 1645 3.606687 AGGAAACAAACGTCAGACAACT 58.393 40.909 0.41 0.00 0.00 3.16
1661 1678 6.921857 ACAATATAGCAAAATCAGCATTCAGC 59.078 34.615 0.00 0.00 46.19 4.26
1662 1679 8.867112 AACAATATAGCAAAATCAGCATTCAG 57.133 30.769 0.00 0.00 0.00 3.02
1663 1680 9.089601 CAAACAATATAGCAAAATCAGCATTCA 57.910 29.630 0.00 0.00 0.00 2.57
1664 1681 9.304731 TCAAACAATATAGCAAAATCAGCATTC 57.695 29.630 0.00 0.00 0.00 2.67
1665 1682 9.826574 ATCAAACAATATAGCAAAATCAGCATT 57.173 25.926 0.00 0.00 0.00 3.56
1666 1683 9.826574 AATCAAACAATATAGCAAAATCAGCAT 57.173 25.926 0.00 0.00 0.00 3.79
1720 1737 6.003326 TCATTTGCATCTCAAAGAACTACCA 58.997 36.000 0.00 0.00 46.68 3.25
1877 2085 5.043903 ACTCAATGATACGCAGACACATAC 58.956 41.667 0.00 0.00 0.00 2.39
1997 2205 2.083774 CCTTGCTTCAACGCCATTCTA 58.916 47.619 0.00 0.00 0.00 2.10
2054 2262 5.101648 TGTCCAGATTATCTGCATCAACA 57.898 39.130 16.18 11.15 42.98 3.33
2256 2464 0.108472 GGCTACGGGTCAACACCTAC 60.108 60.000 0.00 0.00 43.22 3.18
2278 2486 7.775093 TCCATTCCAATCAACTTATGAACCTAG 59.225 37.037 0.00 0.00 42.54 3.02
2322 2530 1.138069 TGACAGGTCAGCAACTCGAAA 59.862 47.619 0.00 0.00 34.14 3.46
2419 2627 6.589830 AATCGAGTTATCACAGGAAAATCG 57.410 37.500 0.00 0.00 40.78 3.34
2564 2772 9.504708 TCACCTGATTTTACTTTAATTAACCGA 57.495 29.630 0.00 0.00 0.00 4.69
2591 2799 5.424757 TGGCTATGTGTGTTATGTAGGTTC 58.575 41.667 0.00 0.00 0.00 3.62
2597 2805 5.252547 TGTTGATGGCTATGTGTGTTATGT 58.747 37.500 0.00 0.00 0.00 2.29
2617 2825 1.529244 GCCAGAGTGCCCTGTTGTT 60.529 57.895 0.00 0.00 32.43 2.83
2688 2896 1.144691 TGATGTTTCCTGGACCACCA 58.855 50.000 0.00 0.00 44.76 4.17
2706 2914 2.569059 GAGTGATGGGTGATGTGGATG 58.431 52.381 0.00 0.00 0.00 3.51
2707 2915 1.492176 GGAGTGATGGGTGATGTGGAT 59.508 52.381 0.00 0.00 0.00 3.41
2708 2916 0.911769 GGAGTGATGGGTGATGTGGA 59.088 55.000 0.00 0.00 0.00 4.02
2935 3143 4.726306 GCAACTTTCTTCTATGAAGCTCGC 60.726 45.833 2.71 0.00 0.00 5.03
2936 3144 4.389992 TGCAACTTTCTTCTATGAAGCTCG 59.610 41.667 2.71 0.00 0.00 5.03
2937 3145 5.869753 TGCAACTTTCTTCTATGAAGCTC 57.130 39.130 2.71 0.00 0.00 4.09
2938 3146 6.264067 AGTTTGCAACTTTCTTCTATGAAGCT 59.736 34.615 0.00 0.00 39.04 3.74
2939 3147 6.361748 CAGTTTGCAACTTTCTTCTATGAAGC 59.638 38.462 0.00 0.00 40.46 3.86
2940 3148 6.860023 CCAGTTTGCAACTTTCTTCTATGAAG 59.140 38.462 0.00 1.23 40.46 3.02
2941 3149 6.735694 GCCAGTTTGCAACTTTCTTCTATGAA 60.736 38.462 0.00 0.00 40.46 2.57
2942 3150 5.278463 GCCAGTTTGCAACTTTCTTCTATGA 60.278 40.000 0.00 0.00 40.46 2.15
2943 3151 4.919754 GCCAGTTTGCAACTTTCTTCTATG 59.080 41.667 0.00 0.00 40.46 2.23
2944 3152 4.584325 TGCCAGTTTGCAACTTTCTTCTAT 59.416 37.500 0.00 0.00 40.46 1.98
2945 3153 3.951037 TGCCAGTTTGCAACTTTCTTCTA 59.049 39.130 0.00 0.00 40.46 2.10
2946 3154 2.760092 TGCCAGTTTGCAACTTTCTTCT 59.240 40.909 0.00 0.00 40.46 2.85
2947 3155 2.860136 GTGCCAGTTTGCAACTTTCTTC 59.140 45.455 0.00 0.00 44.11 2.87
2948 3156 2.735126 CGTGCCAGTTTGCAACTTTCTT 60.735 45.455 0.00 0.00 44.11 2.52
2949 3157 1.202290 CGTGCCAGTTTGCAACTTTCT 60.202 47.619 0.00 0.00 44.11 2.52
2950 3158 1.199624 CGTGCCAGTTTGCAACTTTC 58.800 50.000 0.00 0.00 44.11 2.62
2951 3159 0.814457 TCGTGCCAGTTTGCAACTTT 59.186 45.000 0.00 0.00 44.11 2.66
2952 3160 0.814457 TTCGTGCCAGTTTGCAACTT 59.186 45.000 0.00 0.00 44.11 2.66
2953 3161 0.814457 TTTCGTGCCAGTTTGCAACT 59.186 45.000 0.00 0.00 44.11 3.16
2954 3162 1.587946 CTTTTCGTGCCAGTTTGCAAC 59.412 47.619 0.00 0.00 44.11 4.17
2955 3163 1.919918 CTTTTCGTGCCAGTTTGCAA 58.080 45.000 0.00 0.00 44.11 4.08
2956 3164 0.527385 GCTTTTCGTGCCAGTTTGCA 60.527 50.000 0.00 0.00 39.37 4.08
2957 3165 2.216203 GCTTTTCGTGCCAGTTTGC 58.784 52.632 0.00 0.00 0.00 3.68
2977 3185 5.245751 AGAATGATCTCCAGTAGCCATAGTG 59.754 44.000 0.00 0.00 32.87 2.74
3119 3327 0.037590 GCAGGTGTGTTGGTATGGGA 59.962 55.000 0.00 0.00 0.00 4.37
3205 3413 4.980805 GCACGTGGCTTCGGTCCA 62.981 66.667 18.88 0.00 40.25 4.02
3307 3515 1.679153 CCAAAGTTTGGCACGGTTAGT 59.321 47.619 21.39 0.00 45.17 2.24
3308 3516 2.415697 CCAAAGTTTGGCACGGTTAG 57.584 50.000 21.39 0.00 45.17 2.34
3318 3526 3.573967 ACATGTCCTAAGGCCAAAGTTTG 59.426 43.478 5.01 8.73 0.00 2.93
3319 3527 3.844640 ACATGTCCTAAGGCCAAAGTTT 58.155 40.909 5.01 0.00 0.00 2.66
3320 3528 3.525800 ACATGTCCTAAGGCCAAAGTT 57.474 42.857 5.01 0.00 0.00 2.66
3321 3529 3.157087 CAACATGTCCTAAGGCCAAAGT 58.843 45.455 5.01 0.00 0.00 2.66
3322 3530 3.420893 TCAACATGTCCTAAGGCCAAAG 58.579 45.455 5.01 0.46 0.00 2.77
3323 3531 3.517296 TCAACATGTCCTAAGGCCAAA 57.483 42.857 5.01 0.00 0.00 3.28
3324 3532 3.420893 CTTCAACATGTCCTAAGGCCAA 58.579 45.455 5.01 0.00 0.00 4.52
3325 3533 2.879756 GCTTCAACATGTCCTAAGGCCA 60.880 50.000 5.01 0.00 0.00 5.36
3645 3853 0.035725 CAAGTGCCTGCAGGATCTCA 60.036 55.000 37.21 21.35 37.39 3.27
3654 3862 2.730094 CCAACCACAAGTGCCTGC 59.270 61.111 0.00 0.00 0.00 4.85
3655 3863 2.730094 GCCAACCACAAGTGCCTG 59.270 61.111 0.00 0.00 0.00 4.85
3656 3864 2.906897 CGCCAACCACAAGTGCCT 60.907 61.111 0.00 0.00 0.00 4.75
3776 3984 3.615496 CGGTAATAACAGAAACTCCCACG 59.385 47.826 0.00 0.00 0.00 4.94
3804 4012 7.770897 GGAAGGTCATTCTAATAGTGTTGTCAT 59.229 37.037 0.00 0.00 38.07 3.06
3912 4120 0.107456 CCAACTGGTGCACTGAGAGT 59.893 55.000 17.98 10.73 0.00 3.24
4091 4299 8.596293 CAAAAGTATATATTACCCCCTCCGTTA 58.404 37.037 0.00 0.00 0.00 3.18
4139 4348 2.113860 ATTGAACTACATGCACGGCT 57.886 45.000 0.00 0.00 0.00 5.52
4172 4381 5.046448 ACATCAAGCAATGCCCTAAAAATGA 60.046 36.000 0.00 0.00 0.00 2.57
4289 4499 5.359576 ACTTCAAGCAAATGAACAGTTACCA 59.640 36.000 0.00 0.00 35.55 3.25
4324 4534 3.318839 TCAGGAAATGGTGAAGCAAGTTG 59.681 43.478 0.00 0.00 0.00 3.16
4329 4539 6.662865 TTTATTTCAGGAAATGGTGAAGCA 57.337 33.333 15.61 0.00 40.83 3.91
4368 4578 5.125900 GGTCATGTCAACCATTCATCATTCA 59.874 40.000 0.00 0.00 36.75 2.57
4926 5136 3.278574 TGTGTCCTTGGAACAGACAAAG 58.721 45.455 0.00 0.00 43.42 2.77
4950 5160 2.825836 GCTGATGGGGCAAGGACG 60.826 66.667 0.00 0.00 0.00 4.79
5027 5237 1.676635 GAACAGGCCATGCTGCTGA 60.677 57.895 5.01 0.00 0.00 4.26
5038 5248 2.435059 GAGGAGTGCGGAACAGGC 60.435 66.667 0.00 0.00 0.00 4.85
5142 5352 2.671619 GGTGCCGTAAAGCCAGCA 60.672 61.111 0.00 0.00 0.00 4.41
5155 5365 0.176910 GAGGCTAGACTGGAAGGTGC 59.823 60.000 0.42 0.00 39.30 5.01
5218 5428 2.469162 TGGGACATGTACAAGCCCA 58.531 52.632 22.66 22.66 46.10 5.36
5267 5477 2.093658 GGATAACAACCTCGAAGGCTCA 60.094 50.000 0.00 0.00 39.63 4.26
5329 5539 1.961277 GTGTCGTGGTCTTGGGCTG 60.961 63.158 0.00 0.00 0.00 4.85
5346 5556 1.768482 TGGTACACACTGGGGCAGT 60.768 57.895 0.00 0.00 46.51 4.40
5368 5578 1.483595 CCTCCACCACCTTGAGAGCA 61.484 60.000 0.00 0.00 0.00 4.26
5406 5616 4.680237 TGGCAGCGGTCTTGGTCG 62.680 66.667 0.00 0.00 0.00 4.79
5414 5624 2.270205 CTCAGGATTGGCAGCGGT 59.730 61.111 0.00 0.00 0.00 5.68
5483 5693 3.353836 GTTGGCGCGACACATGGT 61.354 61.111 18.02 0.00 0.00 3.55
5489 5700 2.434185 GAGGATGTTGGCGCGACA 60.434 61.111 12.71 12.71 31.84 4.35
5550 5761 3.451526 CATCTTGTTAGAGAGCGCATGA 58.548 45.455 11.47 0.00 32.92 3.07
5564 5775 3.963428 ACTCGCTTAAGTCCATCTTGT 57.037 42.857 4.02 0.00 37.56 3.16
5577 5788 2.939022 GCGTTGCAGAACTCGCTT 59.061 55.556 12.36 0.00 44.28 4.68
5736 5947 1.599047 CCTGCATCCTCACCTCGTT 59.401 57.895 0.00 0.00 0.00 3.85
5808 6019 3.881952 CTACAGGCAGCACCGCACA 62.882 63.158 0.00 0.00 46.52 4.57
5962 6180 3.628008 TCTAGTACTTCCGCCAATCTCA 58.372 45.455 0.00 0.00 0.00 3.27
6074 6292 4.330250 CCCATCAGCTCAAAAGAAGAAGA 58.670 43.478 0.00 0.00 0.00 2.87
6209 7178 8.866970 ATTTCCATATTTTGAAAAATGCCACT 57.133 26.923 10.56 0.00 38.90 4.00
6226 7195 9.958180 TCAGAAAATGTCACTAGAATTTCCATA 57.042 29.630 0.00 0.00 0.00 2.74
6236 7205 7.812309 TCACGTATTCAGAAAATGTCACTAG 57.188 36.000 0.00 0.00 0.00 2.57
6555 7524 8.492673 AACTCAAGCAAATAGTATCGATCAAA 57.507 30.769 0.00 0.00 0.00 2.69
6603 7572 8.912988 ACAAAAGAAAGGAAATATTGACTGTCA 58.087 29.630 6.36 6.36 0.00 3.58
6885 7855 8.693542 AAGCAACTAAAATGTGCATTTCTATC 57.306 30.769 10.15 0.58 39.88 2.08
7092 8062 0.680280 ATGCTGCTGCCTCTTCCTTG 60.680 55.000 13.47 0.00 38.71 3.61
7329 8347 9.214953 CGAAGAATCTGCATTTAATGAGTTTAC 57.785 33.333 9.36 0.00 0.00 2.01
7558 8576 7.039434 TGCTACTAGATAACATCATCTGAAGGG 60.039 40.741 0.00 0.00 35.99 3.95
7559 8577 7.890515 TGCTACTAGATAACATCATCTGAAGG 58.109 38.462 0.00 0.00 35.99 3.46
7560 8578 9.571810 GATGCTACTAGATAACATCATCTGAAG 57.428 37.037 0.00 0.00 36.67 3.02
7561 8579 8.526978 GGATGCTACTAGATAACATCATCTGAA 58.473 37.037 16.03 0.00 37.89 3.02
7562 8580 7.892771 AGGATGCTACTAGATAACATCATCTGA 59.107 37.037 16.03 0.00 37.89 3.27
7563 8581 8.065473 AGGATGCTACTAGATAACATCATCTG 57.935 38.462 16.03 0.00 37.89 2.90
7564 8582 8.115384 AGAGGATGCTACTAGATAACATCATCT 58.885 37.037 20.41 20.41 45.78 2.90
7641 8661 0.247695 GTTCGCTCCTGTTATTGCGC 60.248 55.000 0.00 0.00 46.73 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.