Multiple sequence alignment - TraesCS3D01G213800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G213800 chr3D 100.000 5402 0 0 1 5402 288101583 288106984 0.000000e+00 9976
1 TraesCS3D01G213800 chr3D 91.847 834 64 4 36 867 374392356 374393187 0.000000e+00 1160
2 TraesCS3D01G213800 chr3D 90.728 852 74 5 33 880 607326556 607327406 0.000000e+00 1131
3 TraesCS3D01G213800 chr3D 91.138 835 67 5 40 867 66146272 66145438 0.000000e+00 1125
4 TraesCS3D01G213800 chr3D 97.384 344 6 2 5061 5402 15326116 15325774 2.800000e-162 582
5 TraesCS3D01G213800 chr3A 95.053 4124 118 41 959 5024 377793683 377797778 0.000000e+00 6407
6 TraesCS3D01G213800 chr3A 95.177 311 10 2 890 1200 377793382 377793687 2.260000e-133 486
7 TraesCS3D01G213800 chr3B 97.219 3632 72 12 872 4489 380886440 380890056 0.000000e+00 6120
8 TraesCS3D01G213800 chr3B 91.159 837 64 8 40 867 571135761 571134926 0.000000e+00 1127
9 TraesCS3D01G213800 chr3B 86.949 544 38 13 4540 5061 380890065 380890597 1.010000e-161 580
10 TraesCS3D01G213800 chr7D 91.415 827 68 3 43 867 454093250 454092425 0.000000e+00 1131
11 TraesCS3D01G213800 chr7D 97.681 345 5 2 5061 5402 517344040 517344384 1.680000e-164 590
12 TraesCS3D01G213800 chr6D 91.697 819 63 4 53 867 17973065 17972248 0.000000e+00 1131
13 TraesCS3D01G213800 chr5D 91.336 831 67 4 42 867 168013454 168014284 0.000000e+00 1131
14 TraesCS3D01G213800 chr5D 85.615 723 68 14 4355 5061 301383796 301383094 0.000000e+00 726
15 TraesCS3D01G213800 chr1D 91.346 832 63 8 40 867 452692938 452692112 0.000000e+00 1129
16 TraesCS3D01G213800 chr1D 97.965 344 4 2 5061 5402 379471006 379470664 1.300000e-165 593
17 TraesCS3D01G213800 chr1D 97.953 342 5 1 5063 5402 184481108 184481449 4.660000e-165 592
18 TraesCS3D01G213800 chr1D 97.661 342 6 1 5063 5402 400172752 400173093 2.170000e-163 586
19 TraesCS3D01G213800 chr1D 97.368 342 7 1 5063 5402 29926441 29926100 1.010000e-161 580
20 TraesCS3D01G213800 chr2D 90.471 850 75 5 34 879 574978549 574977702 0.000000e+00 1116
21 TraesCS3D01G213800 chr2D 98.256 344 4 1 5061 5402 20668462 20668119 7.740000e-168 601
22 TraesCS3D01G213800 chr2D 98.246 342 4 1 5063 5402 156044948 156044607 1.000000e-166 597
23 TraesCS3D01G213800 chr2D 97.384 344 7 2 5061 5402 617958128 617958471 7.800000e-163 584


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G213800 chr3D 288101583 288106984 5401 False 9976.0 9976 100.000 1 5402 1 chr3D.!!$F1 5401
1 TraesCS3D01G213800 chr3D 374392356 374393187 831 False 1160.0 1160 91.847 36 867 1 chr3D.!!$F2 831
2 TraesCS3D01G213800 chr3D 607326556 607327406 850 False 1131.0 1131 90.728 33 880 1 chr3D.!!$F3 847
3 TraesCS3D01G213800 chr3D 66145438 66146272 834 True 1125.0 1125 91.138 40 867 1 chr3D.!!$R2 827
4 TraesCS3D01G213800 chr3A 377793382 377797778 4396 False 3446.5 6407 95.115 890 5024 2 chr3A.!!$F1 4134
5 TraesCS3D01G213800 chr3B 380886440 380890597 4157 False 3350.0 6120 92.084 872 5061 2 chr3B.!!$F1 4189
6 TraesCS3D01G213800 chr3B 571134926 571135761 835 True 1127.0 1127 91.159 40 867 1 chr3B.!!$R1 827
7 TraesCS3D01G213800 chr7D 454092425 454093250 825 True 1131.0 1131 91.415 43 867 1 chr7D.!!$R1 824
8 TraesCS3D01G213800 chr6D 17972248 17973065 817 True 1131.0 1131 91.697 53 867 1 chr6D.!!$R1 814
9 TraesCS3D01G213800 chr5D 168013454 168014284 830 False 1131.0 1131 91.336 42 867 1 chr5D.!!$F1 825
10 TraesCS3D01G213800 chr5D 301383094 301383796 702 True 726.0 726 85.615 4355 5061 1 chr5D.!!$R1 706
11 TraesCS3D01G213800 chr1D 452692112 452692938 826 True 1129.0 1129 91.346 40 867 1 chr1D.!!$R3 827
12 TraesCS3D01G213800 chr2D 574977702 574978549 847 True 1116.0 1116 90.471 34 879 1 chr2D.!!$R3 845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 957 0.678048 GGCTCATTGGGCTTTCGAGT 60.678 55.000 8.71 0.0 0.00 4.18 F
1317 1569 1.073923 CAGGTTGCACCCCTCTTACTT 59.926 52.381 0.00 0.0 39.75 2.24 F
2149 2407 1.139498 TCTGTGGGAGCAAATGGGGA 61.139 55.000 0.00 0.0 0.00 4.81 F
3632 3914 0.916358 AGCTAATCCTGCCCCTGTGT 60.916 55.000 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 2700 1.767759 CCAATAAACAGGGGCTCCAG 58.232 55.0 4.79 0.00 34.83 3.86 R
2848 3129 5.470437 TGTTTAAGCATCGACATACACCAAA 59.530 36.0 0.00 0.00 0.00 3.28 R
3955 4240 1.032014 GTGCAAACCTGAAGCTTCCA 58.968 50.0 23.42 9.42 0.00 3.53 R
5100 5426 0.106708 GGCCGTATGCATCTTCCAGA 59.893 55.0 0.19 0.00 43.89 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.423018 CGCCTAGCAGCAGCCATA 59.577 61.111 0.00 0.00 43.56 2.74
22 23 1.667191 CGCCTAGCAGCAGCCATAG 60.667 63.158 0.00 0.00 43.56 2.23
23 24 1.302351 GCCTAGCAGCAGCCATAGG 60.302 63.158 10.92 10.92 43.56 2.57
24 25 1.374190 CCTAGCAGCAGCCATAGGG 59.626 63.158 8.15 0.00 43.56 3.53
25 26 1.414061 CCTAGCAGCAGCCATAGGGT 61.414 60.000 8.15 0.00 43.56 4.34
26 27 1.342074 CTAGCAGCAGCCATAGGGTA 58.658 55.000 0.00 0.00 43.56 3.69
27 28 1.694150 CTAGCAGCAGCCATAGGGTAA 59.306 52.381 0.00 0.00 43.56 2.85
28 29 1.143813 AGCAGCAGCCATAGGGTAAT 58.856 50.000 0.00 0.00 43.56 1.89
29 30 1.072965 AGCAGCAGCCATAGGGTAATC 59.927 52.381 0.00 0.00 43.56 1.75
30 31 1.202806 GCAGCAGCCATAGGGTAATCA 60.203 52.381 0.00 0.00 36.17 2.57
31 32 2.749466 GCAGCAGCCATAGGGTAATCAA 60.749 50.000 0.00 0.00 36.17 2.57
80 81 1.603455 CGTGTGGTGGGAGCCAAAT 60.603 57.895 0.00 0.00 40.68 2.32
91 92 2.988684 GCCAAATCCGCCCACACA 60.989 61.111 0.00 0.00 0.00 3.72
104 105 3.678806 CGCCCACACACTCTATAACACAT 60.679 47.826 0.00 0.00 0.00 3.21
105 106 3.623060 GCCCACACACTCTATAACACATG 59.377 47.826 0.00 0.00 0.00 3.21
112 113 6.663953 ACACACTCTATAACACATGGACTACT 59.336 38.462 0.00 0.00 0.00 2.57
221 231 7.312154 TGAAGATCCGTTTTCACCATTAAATG 58.688 34.615 0.00 0.00 0.00 2.32
337 352 4.455533 TGCCATGATGTTTACACTGAAGTC 59.544 41.667 0.00 0.00 0.00 3.01
341 356 1.493772 TGTTTACACTGAAGTCGCCG 58.506 50.000 0.00 0.00 0.00 6.46
621 638 5.945784 ACTACAGTGTAAACATCATGGCAAT 59.054 36.000 4.21 0.00 0.00 3.56
687 707 4.506886 AGTTTTGAAGATCTCGTCGAGT 57.493 40.909 21.15 9.33 0.00 4.18
807 828 5.241949 ACCTGTTCATACGTGGCAAAATAAA 59.758 36.000 0.00 0.00 0.00 1.40
822 843 3.715628 AATAAATGGTGATGAAGGCGC 57.284 42.857 0.00 0.00 0.00 6.53
834 855 2.877360 GAAGGCGCGTGGACGATGTA 62.877 60.000 8.43 0.00 43.02 2.29
841 862 0.711670 CGTGGACGATGTACAAACGG 59.288 55.000 22.74 7.31 43.02 4.44
867 888 2.366533 TGTGTGGGCGTTAGTTTTTCA 58.633 42.857 0.00 0.00 0.00 2.69
868 889 2.952978 TGTGTGGGCGTTAGTTTTTCAT 59.047 40.909 0.00 0.00 0.00 2.57
869 890 3.243234 TGTGTGGGCGTTAGTTTTTCATG 60.243 43.478 0.00 0.00 0.00 3.07
890 911 8.752005 TCATGTTTTCTTTTGAGGGATATAGG 57.248 34.615 0.00 0.00 0.00 2.57
892 913 7.039722 TGTTTTCTTTTGAGGGATATAGGGT 57.960 36.000 0.00 0.00 0.00 4.34
893 914 8.165267 TGTTTTCTTTTGAGGGATATAGGGTA 57.835 34.615 0.00 0.00 0.00 3.69
894 915 8.616598 TGTTTTCTTTTGAGGGATATAGGGTAA 58.383 33.333 0.00 0.00 0.00 2.85
895 916 9.642343 GTTTTCTTTTGAGGGATATAGGGTAAT 57.358 33.333 0.00 0.00 0.00 1.89
896 917 9.862149 TTTTCTTTTGAGGGATATAGGGTAATC 57.138 33.333 0.00 0.00 0.00 1.75
897 918 8.575736 TTCTTTTGAGGGATATAGGGTAATCA 57.424 34.615 0.00 0.00 0.00 2.57
898 919 8.575736 TCTTTTGAGGGATATAGGGTAATCAA 57.424 34.615 0.00 0.00 0.00 2.57
905 926 7.004691 AGGGATATAGGGTAATCAAAAAGTGC 58.995 38.462 0.00 0.00 0.00 4.40
936 957 0.678048 GGCTCATTGGGCTTTCGAGT 60.678 55.000 8.71 0.00 0.00 4.18
965 986 1.614160 GTCGTCCTACCCCCTCTCT 59.386 63.158 0.00 0.00 0.00 3.10
1102 1123 4.794439 CGGCTCATCCACGCGTCA 62.794 66.667 9.86 0.00 34.01 4.35
1105 1126 1.875813 GCTCATCCACGCGTCAGAG 60.876 63.158 9.86 15.07 0.00 3.35
1313 1565 2.845345 CCCAGGTTGCACCCCTCTT 61.845 63.158 0.00 0.00 39.75 2.85
1317 1569 1.073923 CAGGTTGCACCCCTCTTACTT 59.926 52.381 0.00 0.00 39.75 2.24
1365 1617 4.858433 CGCGCATGCACATTGGGG 62.858 66.667 19.57 4.55 42.97 4.96
1379 1631 4.343814 CACATTGGGGGTTTAGTGTTTCTT 59.656 41.667 0.00 0.00 0.00 2.52
1480 1732 5.482908 AGCATCATAAAGGTATCGATGGTC 58.517 41.667 8.54 0.00 39.85 4.02
1520 1772 5.477984 AGTCTTTAATCTCCATTGCTTGCAA 59.522 36.000 10.57 10.57 0.00 4.08
1545 1797 3.252215 TGGAAATGTGATTCGGTTGTCAC 59.748 43.478 0.00 0.00 43.81 3.67
2052 2310 6.128035 TGGTTGATTTACTCGATTGGTTGATG 60.128 38.462 0.00 0.00 0.00 3.07
2149 2407 1.139498 TCTGTGGGAGCAAATGGGGA 61.139 55.000 0.00 0.00 0.00 4.81
2442 2700 4.837896 AAAGGACAGTTAGCAAGCTTTC 57.162 40.909 0.00 0.00 0.00 2.62
2838 3119 2.350498 GCCATTGCTTATTTGCTTGCTG 59.650 45.455 0.00 0.00 33.53 4.41
2848 3129 6.294397 GCTTATTTGCTTGCTGGCTTAGATAT 60.294 38.462 3.49 0.00 0.00 1.63
2926 3208 3.244215 TGGACTGCCTTAGTGTTCTTCTG 60.244 47.826 0.00 0.00 40.53 3.02
3166 3448 7.849804 AGATTAATTACTGTGCAATCGTTCT 57.150 32.000 0.00 0.00 32.20 3.01
3259 3541 6.090493 GGAGACTCATCGTAGGTTTTACAAAC 59.910 42.308 4.53 0.00 0.00 2.93
3387 3669 1.808411 ACGTTGTCAATGGGCTAGTG 58.192 50.000 9.56 0.00 0.00 2.74
3445 3727 2.033424 GCCCGAAAGCAATGGAGATTAC 59.967 50.000 0.00 0.00 0.00 1.89
3584 3866 4.192317 ACACCTGAGTTGAACTGAAGAAC 58.808 43.478 0.90 0.00 0.00 3.01
3632 3914 0.916358 AGCTAATCCTGCCCCTGTGT 60.916 55.000 0.00 0.00 0.00 3.72
3637 3919 1.270414 ATCCTGCCCCTGTGTCTCTG 61.270 60.000 0.00 0.00 0.00 3.35
3639 3921 1.294780 CTGCCCCTGTGTCTCTGTC 59.705 63.158 0.00 0.00 0.00 3.51
3774 4056 6.259608 CACAAGGAATTATCTCATGGACTGTC 59.740 42.308 0.00 0.00 0.00 3.51
3955 4240 0.815734 GCAATCAAGCACTCTGCCAT 59.184 50.000 0.00 0.00 46.52 4.40
4070 4355 9.049523 TCTGTTGTTATCTTTGCAGATGATATC 57.950 33.333 0.00 0.00 40.28 1.63
4320 4605 1.078143 GGCTCGCCTGTTCCATTCT 60.078 57.895 0.00 0.00 0.00 2.40
4340 4625 0.322546 AGTGAAAAGCGGTGATCCCC 60.323 55.000 0.00 0.00 0.00 4.81
4420 4707 1.202348 GCAATTCCTGCCTGTTGTACC 59.798 52.381 0.00 0.00 46.13 3.34
4428 4715 2.941064 CTGCCTGTTGTACCTGATGATG 59.059 50.000 0.00 0.00 0.00 3.07
4443 4730 5.579904 CCTGATGATGTAGACAGTTGAGTTG 59.420 44.000 0.00 0.00 0.00 3.16
4444 4731 6.345096 TGATGATGTAGACAGTTGAGTTGA 57.655 37.500 0.00 0.00 0.00 3.18
4445 4732 6.393171 TGATGATGTAGACAGTTGAGTTGAG 58.607 40.000 0.00 0.00 0.00 3.02
4446 4733 5.791336 TGATGTAGACAGTTGAGTTGAGT 57.209 39.130 0.00 0.00 0.00 3.41
4447 4734 6.161855 TGATGTAGACAGTTGAGTTGAGTT 57.838 37.500 0.00 0.00 0.00 3.01
4452 4739 4.688021 AGACAGTTGAGTTGAGTTCAGAC 58.312 43.478 0.00 0.00 0.00 3.51
4496 4796 7.254932 GCTATTTTCTTGTATGCTACTTGGAGG 60.255 40.741 0.00 0.00 0.00 4.30
4526 4827 3.325870 CTGAAAACGTGTGCTAGGATGA 58.674 45.455 0.00 0.00 0.00 2.92
4546 4847 8.215050 AGGATGAATACAAATGTTATCGGGTTA 58.785 33.333 0.00 0.00 0.00 2.85
4547 4848 9.010029 GGATGAATACAAATGTTATCGGGTTAT 57.990 33.333 0.00 0.00 0.00 1.89
4552 4853 9.847224 AATACAAATGTTATCGGGTTATTCTCT 57.153 29.630 0.00 0.00 0.00 3.10
4590 4896 9.245962 GAAGTATATGTAATTACAGCGTTGTCT 57.754 33.333 22.03 11.32 39.92 3.41
4610 4916 1.138036 CAGCGGGTCGTCGTATGAA 59.862 57.895 0.00 0.00 0.00 2.57
4618 4924 4.430908 GGGTCGTCGTATGAATTTTCTCT 58.569 43.478 0.00 0.00 0.00 3.10
4649 4955 2.935201 TGCATTGTTGGTGAAGTTTTGC 59.065 40.909 0.00 0.00 0.00 3.68
4652 4958 2.957491 TGTTGGTGAAGTTTTGCTGG 57.043 45.000 0.00 0.00 0.00 4.85
4658 4964 1.367471 GAAGTTTTGCTGGGTGCCC 59.633 57.895 0.00 0.00 42.00 5.36
4701 5008 1.065491 TGTCCAGGTATGTGCATCCAC 60.065 52.381 0.00 0.00 42.40 4.02
4705 5012 2.684881 CCAGGTATGTGCATCCACTTTC 59.315 50.000 0.00 0.00 42.54 2.62
4710 5017 4.218417 GGTATGTGCATCCACTTTCAAAGT 59.782 41.667 0.00 0.00 44.06 2.66
4711 5018 3.988379 TGTGCATCCACTTTCAAAGTC 57.012 42.857 0.00 0.00 40.46 3.01
4735 5044 3.976169 TGCATTTTTGGCAGTCAAGTAC 58.024 40.909 0.00 0.00 36.11 2.73
4740 5049 6.402766 GCATTTTTGGCAGTCAAGTACGTATA 60.403 38.462 0.00 0.00 36.62 1.47
4742 5051 6.656314 TTTTGGCAGTCAAGTACGTATATG 57.344 37.500 0.00 1.16 36.62 1.78
4813 5122 2.166459 TCGCAGAAGATACAAGGACCTG 59.834 50.000 0.00 0.00 0.00 4.00
4901 5222 4.588951 TCTCAGAGAACACACACTGGTAAT 59.411 41.667 0.00 0.00 0.00 1.89
4976 5297 1.264288 GTGAAGAAGTGGAAAGTGCGG 59.736 52.381 0.00 0.00 0.00 5.69
4979 5300 2.165319 AGAAGTGGAAAGTGCGGTAC 57.835 50.000 0.00 0.00 0.00 3.34
5021 5347 6.319911 GGAAGGCTAGCTTCATTTACTTGATT 59.680 38.462 15.72 0.00 32.84 2.57
5022 5348 7.148000 GGAAGGCTAGCTTCATTTACTTGATTT 60.148 37.037 15.72 0.00 32.84 2.17
5023 5349 8.807948 AAGGCTAGCTTCATTTACTTGATTTA 57.192 30.769 15.72 0.00 0.00 1.40
5061 5387 6.882610 TTTTGATGATGAGTAGCACAAGTT 57.117 33.333 0.00 0.00 0.00 2.66
5062 5388 6.882610 TTTGATGATGAGTAGCACAAGTTT 57.117 33.333 0.00 0.00 0.00 2.66
5063 5389 6.882610 TTGATGATGAGTAGCACAAGTTTT 57.117 33.333 0.00 0.00 0.00 2.43
5064 5390 6.882610 TGATGATGAGTAGCACAAGTTTTT 57.117 33.333 0.00 0.00 0.00 1.94
5090 5416 0.331616 AAAAAGGAGGATGACCCCCG 59.668 55.000 0.00 0.00 36.73 5.73
5091 5417 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
5097 5423 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
5103 5429 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
5104 5430 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
5105 5431 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
5106 5432 2.586245 CGGCCTCTGCATCTGGAA 59.414 61.111 0.00 0.00 40.13 3.53
5107 5433 1.523258 CGGCCTCTGCATCTGGAAG 60.523 63.158 0.00 0.00 40.13 3.46
5118 5444 3.686622 TCTGGAAGATGCATACGGC 57.313 52.632 0.00 0.00 38.67 5.68
5119 5445 0.106708 TCTGGAAGATGCATACGGCC 59.893 55.000 0.00 0.00 38.67 6.13
5120 5446 0.179048 CTGGAAGATGCATACGGCCA 60.179 55.000 2.24 4.53 37.87 5.36
5121 5447 0.463654 TGGAAGATGCATACGGCCAC 60.464 55.000 2.24 0.00 43.89 5.01
5122 5448 0.179045 GGAAGATGCATACGGCCACT 60.179 55.000 2.24 0.00 43.89 4.00
5123 5449 1.668419 GAAGATGCATACGGCCACTT 58.332 50.000 2.24 0.00 43.89 3.16
5124 5450 2.017049 GAAGATGCATACGGCCACTTT 58.983 47.619 2.24 0.00 43.89 2.66
5125 5451 3.202906 GAAGATGCATACGGCCACTTTA 58.797 45.455 2.24 0.00 43.89 1.85
5126 5452 3.492102 AGATGCATACGGCCACTTTAT 57.508 42.857 2.24 0.00 43.89 1.40
5127 5453 3.820557 AGATGCATACGGCCACTTTATT 58.179 40.909 2.24 0.00 43.89 1.40
5128 5454 4.968259 AGATGCATACGGCCACTTTATTA 58.032 39.130 2.24 0.00 43.89 0.98
5129 5455 5.373222 AGATGCATACGGCCACTTTATTAA 58.627 37.500 2.24 0.00 43.89 1.40
5130 5456 6.003950 AGATGCATACGGCCACTTTATTAAT 58.996 36.000 2.24 0.00 43.89 1.40
5131 5457 6.490040 AGATGCATACGGCCACTTTATTAATT 59.510 34.615 2.24 0.00 43.89 1.40
5132 5458 7.663905 AGATGCATACGGCCACTTTATTAATTA 59.336 33.333 2.24 0.00 43.89 1.40
5133 5459 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
5134 5460 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
5135 5461 8.293867 TGCATACGGCCACTTTATTAATTATTC 58.706 33.333 2.24 0.00 43.89 1.75
5136 5462 8.512138 GCATACGGCCACTTTATTAATTATTCT 58.488 33.333 2.24 0.00 36.11 2.40
5138 5464 7.186021 ACGGCCACTTTATTAATTATTCTCG 57.814 36.000 2.24 0.00 0.00 4.04
5139 5465 6.987992 ACGGCCACTTTATTAATTATTCTCGA 59.012 34.615 2.24 0.00 0.00 4.04
5140 5466 7.170998 ACGGCCACTTTATTAATTATTCTCGAG 59.829 37.037 5.93 5.93 0.00 4.04
5141 5467 7.360101 CGGCCACTTTATTAATTATTCTCGAGG 60.360 40.741 13.56 0.00 0.00 4.63
5142 5468 7.660208 GGCCACTTTATTAATTATTCTCGAGGA 59.340 37.037 13.56 3.44 0.00 3.71
5143 5469 8.496751 GCCACTTTATTAATTATTCTCGAGGAC 58.503 37.037 13.56 0.00 0.00 3.85
5144 5470 8.989980 CCACTTTATTAATTATTCTCGAGGACC 58.010 37.037 13.56 0.00 0.00 4.46
5145 5471 9.765795 CACTTTATTAATTATTCTCGAGGACCT 57.234 33.333 13.56 0.00 0.00 3.85
5152 5478 9.595823 TTAATTATTCTCGAGGACCTTACAAAG 57.404 33.333 13.56 0.00 0.00 2.77
5153 5479 6.600882 TTATTCTCGAGGACCTTACAAAGT 57.399 37.500 13.56 0.00 0.00 2.66
5154 5480 7.707624 TTATTCTCGAGGACCTTACAAAGTA 57.292 36.000 13.56 0.00 0.00 2.24
5155 5481 6.793505 ATTCTCGAGGACCTTACAAAGTAT 57.206 37.500 13.56 0.00 0.00 2.12
5156 5482 6.600882 TTCTCGAGGACCTTACAAAGTATT 57.399 37.500 13.56 0.00 0.00 1.89
5157 5483 7.707624 TTCTCGAGGACCTTACAAAGTATTA 57.292 36.000 13.56 0.00 0.00 0.98
5158 5484 7.093322 TCTCGAGGACCTTACAAAGTATTAC 57.907 40.000 13.56 0.00 0.00 1.89
5159 5485 6.660521 TCTCGAGGACCTTACAAAGTATTACA 59.339 38.462 13.56 0.00 0.00 2.41
5160 5486 7.177216 TCTCGAGGACCTTACAAAGTATTACAA 59.823 37.037 13.56 0.00 0.00 2.41
5161 5487 7.669427 TCGAGGACCTTACAAAGTATTACAAA 58.331 34.615 0.00 0.00 0.00 2.83
5162 5488 7.599998 TCGAGGACCTTACAAAGTATTACAAAC 59.400 37.037 0.00 0.00 0.00 2.93
5163 5489 7.385752 CGAGGACCTTACAAAGTATTACAAACA 59.614 37.037 0.00 0.00 0.00 2.83
5164 5490 8.983702 AGGACCTTACAAAGTATTACAAACAA 57.016 30.769 0.00 0.00 0.00 2.83
5165 5491 9.582648 AGGACCTTACAAAGTATTACAAACAAT 57.417 29.630 0.00 0.00 0.00 2.71
5183 5509 9.174166 ACAAACAATATACCTGAAACTACCATC 57.826 33.333 0.00 0.00 0.00 3.51
5184 5510 9.396022 CAAACAATATACCTGAAACTACCATCT 57.604 33.333 0.00 0.00 0.00 2.90
5185 5511 9.975218 AAACAATATACCTGAAACTACCATCTT 57.025 29.630 0.00 0.00 0.00 2.40
5186 5512 8.964476 ACAATATACCTGAAACTACCATCTTG 57.036 34.615 0.00 0.00 0.00 3.02
5187 5513 7.993183 ACAATATACCTGAAACTACCATCTTGG 59.007 37.037 0.00 0.00 45.02 3.61
5188 5514 3.073274 ACCTGAAACTACCATCTTGGC 57.927 47.619 0.00 0.00 42.67 4.52
5189 5515 2.375174 ACCTGAAACTACCATCTTGGCA 59.625 45.455 0.00 0.00 42.67 4.92
5190 5516 3.181434 ACCTGAAACTACCATCTTGGCAA 60.181 43.478 0.00 0.00 42.67 4.52
5191 5517 3.191371 CCTGAAACTACCATCTTGGCAAC 59.809 47.826 0.00 0.00 42.67 4.17
5206 5532 3.694364 CAACATATGCCGCTCCTCT 57.306 52.632 1.58 0.00 0.00 3.69
5207 5533 1.959042 CAACATATGCCGCTCCTCTT 58.041 50.000 1.58 0.00 0.00 2.85
5208 5534 3.111853 CAACATATGCCGCTCCTCTTA 57.888 47.619 1.58 0.00 0.00 2.10
5209 5535 3.668447 CAACATATGCCGCTCCTCTTAT 58.332 45.455 1.58 0.00 0.00 1.73
5210 5536 3.601443 ACATATGCCGCTCCTCTTATC 57.399 47.619 1.58 0.00 0.00 1.75
5211 5537 2.234908 ACATATGCCGCTCCTCTTATCC 59.765 50.000 1.58 0.00 0.00 2.59
5212 5538 2.009681 TATGCCGCTCCTCTTATCCA 57.990 50.000 0.00 0.00 0.00 3.41
5213 5539 1.356124 ATGCCGCTCCTCTTATCCAT 58.644 50.000 0.00 0.00 0.00 3.41
5214 5540 2.009681 TGCCGCTCCTCTTATCCATA 57.990 50.000 0.00 0.00 0.00 2.74
5215 5541 2.540383 TGCCGCTCCTCTTATCCATAT 58.460 47.619 0.00 0.00 0.00 1.78
5216 5542 2.234661 TGCCGCTCCTCTTATCCATATG 59.765 50.000 0.00 0.00 0.00 1.78
5217 5543 2.497675 GCCGCTCCTCTTATCCATATGA 59.502 50.000 3.65 0.00 0.00 2.15
5218 5544 3.133721 GCCGCTCCTCTTATCCATATGAT 59.866 47.826 3.65 0.00 37.49 2.45
5219 5545 4.691175 CCGCTCCTCTTATCCATATGATG 58.309 47.826 3.65 0.00 34.76 3.07
5220 5546 4.161189 CCGCTCCTCTTATCCATATGATGT 59.839 45.833 3.65 0.00 34.76 3.06
5221 5547 5.360999 CCGCTCCTCTTATCCATATGATGTA 59.639 44.000 3.65 0.00 34.76 2.29
5222 5548 6.460814 CCGCTCCTCTTATCCATATGATGTAG 60.461 46.154 3.65 0.00 34.76 2.74
5223 5549 6.460814 CGCTCCTCTTATCCATATGATGTAGG 60.461 46.154 3.65 3.68 34.76 3.18
5224 5550 6.183360 GCTCCTCTTATCCATATGATGTAGGG 60.183 46.154 3.65 0.00 34.76 3.53
5225 5551 7.056522 TCCTCTTATCCATATGATGTAGGGA 57.943 40.000 3.65 1.16 34.76 4.20
5226 5552 7.665922 TCCTCTTATCCATATGATGTAGGGAT 58.334 38.462 3.65 6.51 41.13 3.85
5227 5553 7.566509 TCCTCTTATCCATATGATGTAGGGATG 59.433 40.741 3.65 0.00 38.72 3.51
5228 5554 7.129457 TCTTATCCATATGATGTAGGGATGC 57.871 40.000 3.65 0.00 38.72 3.91
5229 5555 6.905215 TCTTATCCATATGATGTAGGGATGCT 59.095 38.462 3.65 0.00 38.72 3.79
5230 5556 8.067488 TCTTATCCATATGATGTAGGGATGCTA 58.933 37.037 3.65 0.00 38.72 3.49
5231 5557 6.744175 ATCCATATGATGTAGGGATGCTAG 57.256 41.667 3.65 0.00 37.00 3.42
5232 5558 4.406972 TCCATATGATGTAGGGATGCTAGC 59.593 45.833 8.10 8.10 0.00 3.42
5233 5559 4.408270 CCATATGATGTAGGGATGCTAGCT 59.592 45.833 17.23 0.83 0.00 3.32
5234 5560 3.977134 ATGATGTAGGGATGCTAGCTG 57.023 47.619 17.23 0.00 0.00 4.24
5235 5561 1.973515 TGATGTAGGGATGCTAGCTGG 59.026 52.381 17.23 0.00 0.00 4.85
5236 5562 1.277557 GATGTAGGGATGCTAGCTGGG 59.722 57.143 17.23 0.00 0.00 4.45
5237 5563 1.373059 GTAGGGATGCTAGCTGGGC 59.627 63.158 17.23 0.81 0.00 5.36
5238 5564 1.843376 TAGGGATGCTAGCTGGGCC 60.843 63.158 17.23 11.22 0.00 5.80
5239 5565 2.620048 TAGGGATGCTAGCTGGGCCA 62.620 60.000 17.23 5.85 0.00 5.36
5240 5566 2.203266 GGATGCTAGCTGGGCCAC 60.203 66.667 17.23 0.00 0.00 5.01
5241 5567 2.750657 GGATGCTAGCTGGGCCACT 61.751 63.158 17.23 8.06 0.00 4.00
5242 5568 1.410850 GGATGCTAGCTGGGCCACTA 61.411 60.000 17.23 8.85 0.00 2.74
5243 5569 0.250081 GATGCTAGCTGGGCCACTAC 60.250 60.000 17.23 5.65 0.00 2.73
5244 5570 1.700042 ATGCTAGCTGGGCCACTACC 61.700 60.000 17.23 1.99 0.00 3.18
5252 5578 4.090723 GGCCACTACCCAAACCAC 57.909 61.111 0.00 0.00 0.00 4.16
5253 5579 1.458927 GGCCACTACCCAAACCACT 59.541 57.895 0.00 0.00 0.00 4.00
5254 5580 0.608308 GGCCACTACCCAAACCACTC 60.608 60.000 0.00 0.00 0.00 3.51
5255 5581 0.109723 GCCACTACCCAAACCACTCA 59.890 55.000 0.00 0.00 0.00 3.41
5256 5582 1.892209 CCACTACCCAAACCACTCAC 58.108 55.000 0.00 0.00 0.00 3.51
5257 5583 1.544759 CCACTACCCAAACCACTCACC 60.545 57.143 0.00 0.00 0.00 4.02
5258 5584 1.420138 CACTACCCAAACCACTCACCT 59.580 52.381 0.00 0.00 0.00 4.00
5259 5585 2.635915 CACTACCCAAACCACTCACCTA 59.364 50.000 0.00 0.00 0.00 3.08
5260 5586 3.071892 CACTACCCAAACCACTCACCTAA 59.928 47.826 0.00 0.00 0.00 2.69
5261 5587 3.717913 ACTACCCAAACCACTCACCTAAA 59.282 43.478 0.00 0.00 0.00 1.85
5262 5588 2.940158 ACCCAAACCACTCACCTAAAC 58.060 47.619 0.00 0.00 0.00 2.01
5263 5589 2.235891 CCCAAACCACTCACCTAAACC 58.764 52.381 0.00 0.00 0.00 3.27
5264 5590 2.158519 CCCAAACCACTCACCTAAACCT 60.159 50.000 0.00 0.00 0.00 3.50
5265 5591 3.073356 CCCAAACCACTCACCTAAACCTA 59.927 47.826 0.00 0.00 0.00 3.08
5266 5592 4.446600 CCCAAACCACTCACCTAAACCTAA 60.447 45.833 0.00 0.00 0.00 2.69
5267 5593 4.517832 CCAAACCACTCACCTAAACCTAAC 59.482 45.833 0.00 0.00 0.00 2.34
5268 5594 5.127491 CAAACCACTCACCTAAACCTAACA 58.873 41.667 0.00 0.00 0.00 2.41
5269 5595 5.578157 AACCACTCACCTAAACCTAACAT 57.422 39.130 0.00 0.00 0.00 2.71
5270 5596 5.161943 ACCACTCACCTAAACCTAACATC 57.838 43.478 0.00 0.00 0.00 3.06
5271 5597 4.595781 ACCACTCACCTAAACCTAACATCA 59.404 41.667 0.00 0.00 0.00 3.07
5272 5598 5.072600 ACCACTCACCTAAACCTAACATCAA 59.927 40.000 0.00 0.00 0.00 2.57
5273 5599 6.001460 CCACTCACCTAAACCTAACATCAAA 58.999 40.000 0.00 0.00 0.00 2.69
5274 5600 6.488683 CCACTCACCTAAACCTAACATCAAAA 59.511 38.462 0.00 0.00 0.00 2.44
5275 5601 7.308589 CCACTCACCTAAACCTAACATCAAAAG 60.309 40.741 0.00 0.00 0.00 2.27
5276 5602 6.206829 ACTCACCTAAACCTAACATCAAAAGC 59.793 38.462 0.00 0.00 0.00 3.51
5277 5603 5.475564 TCACCTAAACCTAACATCAAAAGCC 59.524 40.000 0.00 0.00 0.00 4.35
5278 5604 4.457949 ACCTAAACCTAACATCAAAAGCCG 59.542 41.667 0.00 0.00 0.00 5.52
5279 5605 3.934457 AAACCTAACATCAAAAGCCGG 57.066 42.857 0.00 0.00 0.00 6.13
5280 5606 2.871096 ACCTAACATCAAAAGCCGGA 57.129 45.000 5.05 0.00 0.00 5.14
5281 5607 3.149005 ACCTAACATCAAAAGCCGGAA 57.851 42.857 5.05 0.00 0.00 4.30
5282 5608 3.081804 ACCTAACATCAAAAGCCGGAAG 58.918 45.455 5.05 0.00 0.00 3.46
5283 5609 2.159379 CCTAACATCAAAAGCCGGAAGC 60.159 50.000 5.05 0.00 44.25 3.86
5284 5610 0.603065 AACATCAAAAGCCGGAAGCC 59.397 50.000 5.05 0.00 45.47 4.35
5285 5611 1.250840 ACATCAAAAGCCGGAAGCCC 61.251 55.000 5.05 0.00 45.47 5.19
5286 5612 1.682344 ATCAAAAGCCGGAAGCCCC 60.682 57.895 5.05 0.00 45.47 5.80
5287 5613 2.439553 ATCAAAAGCCGGAAGCCCCA 62.440 55.000 5.05 0.00 45.47 4.96
5288 5614 2.283173 AAAAGCCGGAAGCCCCAG 60.283 61.111 5.05 0.00 45.47 4.45
5300 5626 3.479203 CCCCAGCCGAGCCACATA 61.479 66.667 0.00 0.00 0.00 2.29
5301 5627 2.203070 CCCAGCCGAGCCACATAC 60.203 66.667 0.00 0.00 0.00 2.39
5302 5628 2.203070 CCAGCCGAGCCACATACC 60.203 66.667 0.00 0.00 0.00 2.73
5303 5629 2.586079 CAGCCGAGCCACATACCG 60.586 66.667 0.00 0.00 0.00 4.02
5304 5630 3.849951 AGCCGAGCCACATACCGG 61.850 66.667 0.00 0.00 44.34 5.28
5305 5631 4.910585 GCCGAGCCACATACCGGG 62.911 72.222 6.32 0.00 42.02 5.73
5306 5632 3.467226 CCGAGCCACATACCGGGT 61.467 66.667 6.32 4.46 38.42 5.28
5307 5633 2.106332 CGAGCCACATACCGGGTC 59.894 66.667 6.32 0.00 45.62 4.46
5308 5634 2.423898 CGAGCCACATACCGGGTCT 61.424 63.158 6.32 0.00 46.65 3.85
5309 5635 1.144057 GAGCCACATACCGGGTCTG 59.856 63.158 6.32 7.03 45.62 3.51
5310 5636 2.189521 GCCACATACCGGGTCTGG 59.810 66.667 15.92 13.91 0.00 3.86
5311 5637 2.908015 CCACATACCGGGTCTGGG 59.092 66.667 15.92 12.10 0.00 4.45
5312 5638 2.742116 CCACATACCGGGTCTGGGG 61.742 68.421 18.26 18.26 27.30 4.96
5313 5639 3.087906 ACATACCGGGTCTGGGGC 61.088 66.667 15.92 0.00 0.00 5.80
5314 5640 3.087253 CATACCGGGTCTGGGGCA 61.087 66.667 6.32 0.00 0.00 5.36
5315 5641 3.087906 ATACCGGGTCTGGGGCAC 61.088 66.667 6.32 0.00 0.00 5.01
5316 5642 3.935456 ATACCGGGTCTGGGGCACA 62.935 63.158 6.32 0.00 0.00 4.57
5318 5644 4.047125 CCGGGTCTGGGGCACAAT 62.047 66.667 0.00 0.00 0.00 2.71
5319 5645 2.438434 CGGGTCTGGGGCACAATC 60.438 66.667 0.00 0.00 0.00 2.67
5320 5646 2.043953 GGGTCTGGGGCACAATCC 60.044 66.667 0.00 0.00 0.00 3.01
5321 5647 2.438434 GGTCTGGGGCACAATCCG 60.438 66.667 0.00 0.00 0.00 4.18
5322 5648 2.438434 GTCTGGGGCACAATCCGG 60.438 66.667 0.00 0.00 0.00 5.14
5323 5649 2.933287 TCTGGGGCACAATCCGGT 60.933 61.111 0.00 0.00 0.00 5.28
5324 5650 2.438434 CTGGGGCACAATCCGGTC 60.438 66.667 0.00 0.00 0.00 4.79
5325 5651 3.253061 TGGGGCACAATCCGGTCA 61.253 61.111 0.00 0.00 0.00 4.02
5326 5652 2.438434 GGGGCACAATCCGGTCAG 60.438 66.667 0.00 0.00 0.00 3.51
5327 5653 2.668632 GGGCACAATCCGGTCAGA 59.331 61.111 0.00 0.00 0.00 3.27
5328 5654 1.745489 GGGCACAATCCGGTCAGAC 60.745 63.158 0.00 0.00 0.00 3.51
5329 5655 2.100631 GGCACAATCCGGTCAGACG 61.101 63.158 0.00 0.00 0.00 4.18
5330 5656 2.740714 GCACAATCCGGTCAGACGC 61.741 63.158 0.00 0.00 0.00 5.19
5331 5657 1.374125 CACAATCCGGTCAGACGCA 60.374 57.895 0.00 0.00 0.00 5.24
5332 5658 1.374252 ACAATCCGGTCAGACGCAC 60.374 57.895 0.00 0.00 0.00 5.34
5333 5659 1.079819 CAATCCGGTCAGACGCACT 60.080 57.895 0.00 0.00 0.00 4.40
5334 5660 0.670546 CAATCCGGTCAGACGCACTT 60.671 55.000 0.00 0.00 0.00 3.16
5335 5661 0.670546 AATCCGGTCAGACGCACTTG 60.671 55.000 0.00 0.00 0.00 3.16
5336 5662 1.816863 ATCCGGTCAGACGCACTTGT 61.817 55.000 0.00 0.00 0.00 3.16
5337 5663 2.310233 CCGGTCAGACGCACTTGTG 61.310 63.158 0.00 0.00 0.00 3.33
5338 5664 1.591594 CGGTCAGACGCACTTGTGT 60.592 57.895 0.00 0.00 42.13 3.72
5343 5669 2.837280 GACGCACTTGTGTCGTCG 59.163 61.111 23.17 12.95 44.27 5.12
5344 5670 3.264487 GACGCACTTGTGTCGTCGC 62.264 63.158 23.17 11.34 44.27 5.19
5345 5671 4.059459 CGCACTTGTGTCGTCGCC 62.059 66.667 2.61 0.00 0.00 5.54
5346 5672 4.059459 GCACTTGTGTCGTCGCCG 62.059 66.667 2.61 0.00 0.00 6.46
5347 5673 4.059459 CACTTGTGTCGTCGCCGC 62.059 66.667 0.00 0.00 0.00 6.53
5350 5676 4.673298 TTGTGTCGTCGCCGCCAT 62.673 61.111 0.00 0.00 0.00 4.40
5352 5678 4.796231 GTGTCGTCGCCGCCATCT 62.796 66.667 0.00 0.00 0.00 2.90
5353 5679 4.063967 TGTCGTCGCCGCCATCTT 62.064 61.111 0.00 0.00 0.00 2.40
5354 5680 3.255379 GTCGTCGCCGCCATCTTC 61.255 66.667 0.00 0.00 0.00 2.87
5355 5681 4.508128 TCGTCGCCGCCATCTTCC 62.508 66.667 0.00 0.00 0.00 3.46
5356 5682 4.812476 CGTCGCCGCCATCTTCCA 62.812 66.667 0.00 0.00 0.00 3.53
5357 5683 3.195698 GTCGCCGCCATCTTCCAC 61.196 66.667 0.00 0.00 0.00 4.02
5358 5684 3.700970 TCGCCGCCATCTTCCACA 61.701 61.111 0.00 0.00 0.00 4.17
5359 5685 2.745884 CGCCGCCATCTTCCACAA 60.746 61.111 0.00 0.00 0.00 3.33
5360 5686 2.753966 CGCCGCCATCTTCCACAAG 61.754 63.158 0.00 0.00 0.00 3.16
5361 5687 1.675641 GCCGCCATCTTCCACAAGT 60.676 57.895 0.00 0.00 0.00 3.16
5362 5688 1.648467 GCCGCCATCTTCCACAAGTC 61.648 60.000 0.00 0.00 0.00 3.01
5363 5689 1.026718 CCGCCATCTTCCACAAGTCC 61.027 60.000 0.00 0.00 0.00 3.85
5364 5690 1.361668 CGCCATCTTCCACAAGTCCG 61.362 60.000 0.00 0.00 0.00 4.79
5365 5691 0.321653 GCCATCTTCCACAAGTCCGT 60.322 55.000 0.00 0.00 0.00 4.69
5366 5692 1.726853 CCATCTTCCACAAGTCCGTC 58.273 55.000 0.00 0.00 0.00 4.79
5367 5693 1.276421 CCATCTTCCACAAGTCCGTCT 59.724 52.381 0.00 0.00 0.00 4.18
5368 5694 2.289694 CCATCTTCCACAAGTCCGTCTT 60.290 50.000 0.00 0.00 36.75 3.01
5369 5695 2.814280 TCTTCCACAAGTCCGTCTTC 57.186 50.000 0.00 0.00 33.63 2.87
5370 5696 2.036387 TCTTCCACAAGTCCGTCTTCA 58.964 47.619 0.00 0.00 33.63 3.02
5371 5697 2.035961 TCTTCCACAAGTCCGTCTTCAG 59.964 50.000 0.00 0.00 33.63 3.02
5372 5698 1.699730 TCCACAAGTCCGTCTTCAGA 58.300 50.000 0.00 0.00 33.63 3.27
5373 5699 2.248248 TCCACAAGTCCGTCTTCAGAT 58.752 47.619 0.00 0.00 33.63 2.90
5374 5700 2.632996 TCCACAAGTCCGTCTTCAGATT 59.367 45.455 0.00 0.00 33.63 2.40
5375 5701 3.830178 TCCACAAGTCCGTCTTCAGATTA 59.170 43.478 0.00 0.00 33.63 1.75
5376 5702 4.466370 TCCACAAGTCCGTCTTCAGATTAT 59.534 41.667 0.00 0.00 33.63 1.28
5377 5703 5.655090 TCCACAAGTCCGTCTTCAGATTATA 59.345 40.000 0.00 0.00 33.63 0.98
5378 5704 6.323996 TCCACAAGTCCGTCTTCAGATTATAT 59.676 38.462 0.00 0.00 33.63 0.86
5379 5705 6.986817 CCACAAGTCCGTCTTCAGATTATATT 59.013 38.462 0.00 0.00 33.63 1.28
5380 5706 7.042456 CCACAAGTCCGTCTTCAGATTATATTG 60.042 40.741 0.00 0.00 33.63 1.90
5381 5707 7.706607 CACAAGTCCGTCTTCAGATTATATTGA 59.293 37.037 0.00 0.00 33.63 2.57
5382 5708 8.258007 ACAAGTCCGTCTTCAGATTATATTGAA 58.742 33.333 0.00 0.00 33.63 2.69
5383 5709 9.265901 CAAGTCCGTCTTCAGATTATATTGAAT 57.734 33.333 0.00 0.00 33.25 2.57
5384 5710 9.482627 AAGTCCGTCTTCAGATTATATTGAATC 57.517 33.333 0.00 0.00 36.28 2.52
5385 5711 8.865090 AGTCCGTCTTCAGATTATATTGAATCT 58.135 33.333 0.00 0.00 45.17 2.40
5386 5712 9.482627 GTCCGTCTTCAGATTATATTGAATCTT 57.517 33.333 0.00 0.00 42.33 2.40
5387 5713 9.698309 TCCGTCTTCAGATTATATTGAATCTTC 57.302 33.333 0.00 0.00 42.33 2.87
5388 5714 9.703892 CCGTCTTCAGATTATATTGAATCTTCT 57.296 33.333 0.00 0.00 42.33 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.814615 TATGGCTGCTGCTAGGCGC 62.815 63.158 15.64 0.00 45.43 6.53
4 5 1.667191 CTATGGCTGCTGCTAGGCG 60.667 63.158 15.64 0.00 45.43 5.52
6 7 1.374190 CCCTATGGCTGCTGCTAGG 59.626 63.158 18.58 18.58 37.06 3.02
7 8 1.342074 TACCCTATGGCTGCTGCTAG 58.658 55.000 15.64 9.79 39.59 3.42
8 9 1.801242 TTACCCTATGGCTGCTGCTA 58.199 50.000 15.64 10.07 39.59 3.49
9 10 1.072965 GATTACCCTATGGCTGCTGCT 59.927 52.381 15.64 0.00 39.59 4.24
10 11 1.202806 TGATTACCCTATGGCTGCTGC 60.203 52.381 7.10 7.10 38.76 5.25
11 12 2.936919 TGATTACCCTATGGCTGCTG 57.063 50.000 0.00 0.00 33.59 4.41
12 13 4.459852 AATTGATTACCCTATGGCTGCT 57.540 40.909 0.00 0.00 33.59 4.24
13 14 5.535753 AAAATTGATTACCCTATGGCTGC 57.464 39.130 0.00 0.00 33.59 5.25
80 81 1.479323 GTTATAGAGTGTGTGGGCGGA 59.521 52.381 0.00 0.00 0.00 5.54
91 92 7.956328 TGAAGTAGTCCATGTGTTATAGAGT 57.044 36.000 0.00 0.00 0.00 3.24
104 105 2.495669 TGCGATGACATGAAGTAGTCCA 59.504 45.455 0.00 0.00 33.89 4.02
105 106 3.165058 TGCGATGACATGAAGTAGTCC 57.835 47.619 0.00 0.00 33.89 3.85
195 205 6.494893 TTAATGGTGAAAACGGATCTTCAG 57.505 37.500 0.00 0.00 32.36 3.02
281 296 7.486551 GTGCAATAGATACGGCAATTTTTAACA 59.513 33.333 0.00 0.00 38.10 2.41
289 304 4.388485 TCATGTGCAATAGATACGGCAAT 58.612 39.130 0.00 0.00 38.10 3.56
337 352 1.290203 AGCTGAAACATATCACGGCG 58.710 50.000 4.80 4.80 39.28 6.46
400 416 5.944007 GGCAAGTCTAGTTTCTTAATTCCCA 59.056 40.000 0.00 0.00 0.00 4.37
537 554 9.421806 CAAATTTAGTTTGTAGATCATGGCAAA 57.578 29.630 0.00 0.00 41.80 3.68
567 584 8.673711 CATAGTGCTTAAACTAAAGTTGCCATA 58.326 33.333 0.00 0.00 38.44 2.74
659 679 4.773149 ACGAGATCTTCAAAACTAGACCCT 59.227 41.667 0.00 0.00 0.00 4.34
767 788 5.593909 TGAACAGGTGACATCAACAGAATTT 59.406 36.000 0.00 0.00 35.62 1.82
769 790 4.717877 TGAACAGGTGACATCAACAGAAT 58.282 39.130 0.00 0.00 35.62 2.40
784 805 3.848272 ATTTTGCCACGTATGAACAGG 57.152 42.857 0.00 0.00 0.00 4.00
807 828 2.108514 CACGCGCCTTCATCACCAT 61.109 57.895 5.73 0.00 0.00 3.55
822 843 0.711670 CCGTTTGTACATCGTCCACG 59.288 55.000 15.97 9.46 41.45 4.94
834 855 1.732917 CACACATGTGGCCGTTTGT 59.267 52.632 28.64 3.06 42.10 2.83
867 888 7.652554 ACCCTATATCCCTCAAAAGAAAACAT 58.347 34.615 0.00 0.00 0.00 2.71
868 889 7.039722 ACCCTATATCCCTCAAAAGAAAACA 57.960 36.000 0.00 0.00 0.00 2.83
869 890 9.642343 ATTACCCTATATCCCTCAAAAGAAAAC 57.358 33.333 0.00 0.00 0.00 2.43
889 910 3.130516 GGGCTAGCACTTTTTGATTACCC 59.869 47.826 18.24 0.00 0.00 3.69
890 911 3.181500 CGGGCTAGCACTTTTTGATTACC 60.181 47.826 16.47 1.48 0.00 2.85
892 913 3.013921 CCGGGCTAGCACTTTTTGATTA 58.986 45.455 16.47 0.00 0.00 1.75
893 914 1.818674 CCGGGCTAGCACTTTTTGATT 59.181 47.619 16.47 0.00 0.00 2.57
894 915 1.463674 CCGGGCTAGCACTTTTTGAT 58.536 50.000 16.47 0.00 0.00 2.57
895 916 1.241315 GCCGGGCTAGCACTTTTTGA 61.241 55.000 16.47 0.00 0.00 2.69
896 917 1.212751 GCCGGGCTAGCACTTTTTG 59.787 57.895 16.47 0.00 0.00 2.44
897 918 1.977009 GGCCGGGCTAGCACTTTTT 60.977 57.895 22.87 0.00 0.00 1.94
898 919 2.361230 GGCCGGGCTAGCACTTTT 60.361 61.111 22.87 0.00 0.00 2.27
936 957 0.888736 TAGGACGACGACGGGTTTCA 60.889 55.000 12.58 0.00 44.46 2.69
1102 1123 3.503227 GGATATGTAAGGAGGGAGGCTCT 60.503 52.174 15.23 0.00 0.00 4.09
1105 1126 2.835156 GAGGATATGTAAGGAGGGAGGC 59.165 54.545 0.00 0.00 0.00 4.70
1302 1554 3.585289 TGTATGAAAGTAAGAGGGGTGCA 59.415 43.478 0.00 0.00 0.00 4.57
1345 1597 1.297819 CCAATGTGCATGCGCGTAG 60.298 57.895 25.34 16.16 42.97 3.51
1365 1617 9.855021 AATGTGCATAATAAGAAACACTAAACC 57.145 29.630 0.00 0.00 0.00 3.27
1379 1631 5.181056 CCGCATAGACCAAATGTGCATAATA 59.819 40.000 0.00 0.00 34.77 0.98
1520 1772 3.826157 ACAACCGAATCACATTTCCACAT 59.174 39.130 0.00 0.00 0.00 3.21
1545 1797 1.900486 ACTCCGGAACTAACCTTCCAG 59.100 52.381 5.23 0.00 39.98 3.86
1773 2025 7.772757 TGTGGCACATTACATGATTCTAATACA 59.227 33.333 17.96 0.00 44.52 2.29
1968 2225 9.832445 AACACTTAATACGATTCTGAATACCAT 57.168 29.630 2.28 0.00 0.00 3.55
1969 2226 9.661563 AAACACTTAATACGATTCTGAATACCA 57.338 29.630 2.28 0.00 0.00 3.25
2052 2310 9.311916 CTCTTATCTCATAAGCCATAGCATAAC 57.688 37.037 0.00 0.00 41.52 1.89
2149 2407 6.550854 TCAATCAAATTCACCTTCTCTGGTTT 59.449 34.615 0.00 0.00 38.45 3.27
2442 2700 1.767759 CCAATAAACAGGGGCTCCAG 58.232 55.000 4.79 0.00 34.83 3.86
2838 3119 6.220930 TCGACATACACCAAATATCTAAGCC 58.779 40.000 0.00 0.00 0.00 4.35
2848 3129 5.470437 TGTTTAAGCATCGACATACACCAAA 59.530 36.000 0.00 0.00 0.00 3.28
2926 3208 8.082242 AGTTTCAGAATAAACCATACAACTTGC 58.918 33.333 0.00 0.00 39.66 4.01
3584 3866 3.708890 TGTACACACTACGGTCAACAAG 58.291 45.455 0.00 0.00 0.00 3.16
3618 3900 1.081833 AGAGACACAGGGGCAGGAT 59.918 57.895 0.00 0.00 0.00 3.24
3632 3914 9.594478 TTAGCAATTTATTTATGTCGACAGAGA 57.406 29.630 24.41 15.35 0.00 3.10
3774 4056 6.664515 TGCTTACAGAATTGTTCGTAAAAGG 58.335 36.000 0.00 0.00 38.76 3.11
3802 4087 9.950496 ACATGTCATTTATTCAAGAGACTAGTT 57.050 29.630 0.00 0.00 0.00 2.24
3837 4122 7.971183 TTGCCTGCATATATATCGTTGTTTA 57.029 32.000 0.00 0.00 0.00 2.01
3955 4240 1.032014 GTGCAAACCTGAAGCTTCCA 58.968 50.000 23.42 9.42 0.00 3.53
4070 4355 1.825191 CATTGGCCCATGGACGGAG 60.825 63.158 15.22 0.00 29.56 4.63
4320 4605 1.065709 GGGGATCACCGCTTTTCACTA 60.066 52.381 0.00 0.00 44.32 2.74
4340 4625 7.504924 TGGTTAACAGATTACACAAAGGAAG 57.495 36.000 8.10 0.00 0.00 3.46
4376 4661 9.647797 TGCAGAGAGTCTCGTTATTTTTATTAA 57.352 29.630 14.47 0.00 35.36 1.40
4377 4662 9.647797 TTGCAGAGAGTCTCGTTATTTTTATTA 57.352 29.630 14.47 0.00 35.36 0.98
4410 4697 5.105351 TGTCTACATCATCAGGTACAACAGG 60.105 44.000 0.00 0.00 0.00 4.00
4411 4698 5.965922 TGTCTACATCATCAGGTACAACAG 58.034 41.667 0.00 0.00 0.00 3.16
4412 4699 5.480422 ACTGTCTACATCATCAGGTACAACA 59.520 40.000 0.00 0.00 32.92 3.33
4413 4700 5.967088 ACTGTCTACATCATCAGGTACAAC 58.033 41.667 0.00 0.00 32.92 3.32
4420 4707 6.393171 TCAACTCAACTGTCTACATCATCAG 58.607 40.000 0.00 0.00 0.00 2.90
4428 4715 5.688176 GTCTGAACTCAACTCAACTGTCTAC 59.312 44.000 0.00 0.00 0.00 2.59
4443 4730 3.691609 CCAAATAAGCCTGGTCTGAACTC 59.308 47.826 0.00 0.00 0.00 3.01
4444 4731 3.562176 CCCAAATAAGCCTGGTCTGAACT 60.562 47.826 0.00 0.00 0.00 3.01
4445 4732 2.755103 CCCAAATAAGCCTGGTCTGAAC 59.245 50.000 0.00 0.00 0.00 3.18
4446 4733 2.378547 ACCCAAATAAGCCTGGTCTGAA 59.621 45.455 0.00 0.00 0.00 3.02
4447 4734 1.992557 ACCCAAATAAGCCTGGTCTGA 59.007 47.619 0.00 0.00 0.00 3.27
4452 4739 1.329913 GCCCACCCAAATAAGCCTGG 61.330 60.000 0.00 0.00 0.00 4.45
4496 4796 3.680789 CACACGTTTTCAGGACTTGTTC 58.319 45.455 0.00 0.00 28.41 3.18
4502 4802 1.798813 CCTAGCACACGTTTTCAGGAC 59.201 52.381 0.00 0.00 0.00 3.85
4526 4827 9.847224 AGAGAATAACCCGATAACATTTGTATT 57.153 29.630 0.00 0.00 0.00 1.89
4573 4879 4.638963 GCTGAAGACAACGCTGTAATTAC 58.361 43.478 8.75 8.75 35.30 1.89
4590 4896 1.138036 CATACGACGACCCGCTGAA 59.862 57.895 0.00 0.00 0.00 3.02
4610 4916 3.748083 TGCAGCAAGAGACAGAGAAAAT 58.252 40.909 0.00 0.00 0.00 1.82
4618 4924 1.610038 CCAACAATGCAGCAAGAGACA 59.390 47.619 0.00 0.00 0.00 3.41
4675 4982 1.645034 CACATACCTGGACAGCTTCG 58.355 55.000 0.00 0.00 0.00 3.79
4681 4988 1.065491 GTGGATGCACATACCTGGACA 60.065 52.381 13.07 0.00 0.00 4.02
4691 4998 3.554934 AGACTTTGAAAGTGGATGCACA 58.445 40.909 20.21 0.00 43.03 4.57
4701 5008 5.050567 GCCAAAAATGCAGAGACTTTGAAAG 60.051 40.000 2.89 2.89 0.00 2.62
4705 5012 3.719924 TGCCAAAAATGCAGAGACTTTG 58.280 40.909 0.00 0.00 34.05 2.77
4735 5044 8.570096 TTCCTTGTTTCTATCGAACATATACG 57.430 34.615 0.00 0.00 0.00 3.06
4740 5049 8.454106 CAAGAATTCCTTGTTTCTATCGAACAT 58.546 33.333 0.65 0.00 45.52 2.71
4813 5122 4.440127 CAATGCAACCAGGGCGGC 62.440 66.667 0.00 0.00 39.03 6.53
4857 5171 6.596888 TGAGACTACGTATGTTAGTACTGCTT 59.403 38.462 5.39 0.00 0.00 3.91
4901 5222 1.079490 AGATCAACTCCCTCCCTGTGA 59.921 52.381 0.00 0.00 0.00 3.58
4976 5297 2.034053 CCTCCATCTCAGCTCTTCGTAC 59.966 54.545 0.00 0.00 0.00 3.67
4979 5300 1.397672 TCCTCCATCTCAGCTCTTCG 58.602 55.000 0.00 0.00 0.00 3.79
5040 5366 6.882610 AAAACTTGTGCTACTCATCATCAA 57.117 33.333 0.00 0.00 0.00 2.57
5041 5367 6.882610 AAAAACTTGTGCTACTCATCATCA 57.117 33.333 0.00 0.00 0.00 3.07
5080 5406 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
5086 5412 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
5087 5413 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
5088 5414 2.937379 CTTCCAGATGCAGAGGCCGG 62.937 65.000 0.00 0.00 40.13 6.13
5089 5415 1.523258 CTTCCAGATGCAGAGGCCG 60.523 63.158 0.00 0.00 40.13 6.13
5090 5416 0.473326 ATCTTCCAGATGCAGAGGCC 59.527 55.000 0.00 0.00 40.13 5.19
5091 5417 1.595466 CATCTTCCAGATGCAGAGGC 58.405 55.000 0.84 0.00 44.69 4.70
5099 5425 1.271054 GGCCGTATGCATCTTCCAGAT 60.271 52.381 0.19 0.00 43.89 2.90
5100 5426 0.106708 GGCCGTATGCATCTTCCAGA 59.893 55.000 0.19 0.00 43.89 3.86
5101 5427 0.179048 TGGCCGTATGCATCTTCCAG 60.179 55.000 0.19 0.00 43.89 3.86
5102 5428 0.463654 GTGGCCGTATGCATCTTCCA 60.464 55.000 0.19 4.04 43.89 3.53
5103 5429 0.179045 AGTGGCCGTATGCATCTTCC 60.179 55.000 0.19 1.09 43.89 3.46
5104 5430 1.668419 AAGTGGCCGTATGCATCTTC 58.332 50.000 0.19 0.00 43.89 2.87
5105 5431 2.128771 AAAGTGGCCGTATGCATCTT 57.871 45.000 0.19 0.00 43.89 2.40
5106 5432 3.492102 ATAAAGTGGCCGTATGCATCT 57.508 42.857 0.19 0.00 43.89 2.90
5107 5433 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
5108 5434 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
5109 5435 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
5110 5436 8.512138 AGAATAATTAATAAAGTGGCCGTATGC 58.488 33.333 0.00 0.00 40.16 3.14
5112 5438 8.932791 CGAGAATAATTAATAAAGTGGCCGTAT 58.067 33.333 0.00 0.00 0.00 3.06
5113 5439 8.143193 TCGAGAATAATTAATAAAGTGGCCGTA 58.857 33.333 0.00 0.00 0.00 4.02
5114 5440 6.987992 TCGAGAATAATTAATAAAGTGGCCGT 59.012 34.615 0.00 0.00 0.00 5.68
5115 5441 7.360101 CCTCGAGAATAATTAATAAAGTGGCCG 60.360 40.741 15.71 0.00 0.00 6.13
5116 5442 7.660208 TCCTCGAGAATAATTAATAAAGTGGCC 59.340 37.037 15.71 0.00 0.00 5.36
5117 5443 8.496751 GTCCTCGAGAATAATTAATAAAGTGGC 58.503 37.037 15.71 0.00 0.00 5.01
5118 5444 8.989980 GGTCCTCGAGAATAATTAATAAAGTGG 58.010 37.037 15.71 0.00 0.00 4.00
5119 5445 9.765795 AGGTCCTCGAGAATAATTAATAAAGTG 57.234 33.333 15.71 0.00 0.00 3.16
5126 5452 9.595823 CTTTGTAAGGTCCTCGAGAATAATTAA 57.404 33.333 15.71 0.00 0.00 1.40
5127 5453 8.755977 ACTTTGTAAGGTCCTCGAGAATAATTA 58.244 33.333 15.71 3.67 0.00 1.40
5128 5454 7.621796 ACTTTGTAAGGTCCTCGAGAATAATT 58.378 34.615 15.71 4.65 0.00 1.40
5129 5455 7.184067 ACTTTGTAAGGTCCTCGAGAATAAT 57.816 36.000 15.71 0.00 0.00 1.28
5130 5456 6.600882 ACTTTGTAAGGTCCTCGAGAATAA 57.399 37.500 15.71 0.00 0.00 1.40
5131 5457 7.893124 ATACTTTGTAAGGTCCTCGAGAATA 57.107 36.000 15.71 0.00 0.00 1.75
5132 5458 6.793505 ATACTTTGTAAGGTCCTCGAGAAT 57.206 37.500 15.71 0.00 0.00 2.40
5133 5459 6.600882 AATACTTTGTAAGGTCCTCGAGAA 57.399 37.500 15.71 0.00 0.00 2.87
5134 5460 6.660521 TGTAATACTTTGTAAGGTCCTCGAGA 59.339 38.462 15.71 0.00 0.00 4.04
5135 5461 6.860080 TGTAATACTTTGTAAGGTCCTCGAG 58.140 40.000 5.13 5.13 0.00 4.04
5136 5462 6.839124 TGTAATACTTTGTAAGGTCCTCGA 57.161 37.500 0.00 0.00 0.00 4.04
5137 5463 7.385752 TGTTTGTAATACTTTGTAAGGTCCTCG 59.614 37.037 0.00 0.00 0.00 4.63
5138 5464 8.611654 TGTTTGTAATACTTTGTAAGGTCCTC 57.388 34.615 0.00 0.00 0.00 3.71
5139 5465 8.983702 TTGTTTGTAATACTTTGTAAGGTCCT 57.016 30.769 0.00 0.00 0.00 3.85
5157 5483 9.174166 GATGGTAGTTTCAGGTATATTGTTTGT 57.826 33.333 0.00 0.00 0.00 2.83
5158 5484 9.396022 AGATGGTAGTTTCAGGTATATTGTTTG 57.604 33.333 0.00 0.00 0.00 2.93
5159 5485 9.975218 AAGATGGTAGTTTCAGGTATATTGTTT 57.025 29.630 0.00 0.00 0.00 2.83
5160 5486 9.396022 CAAGATGGTAGTTTCAGGTATATTGTT 57.604 33.333 0.00 0.00 0.00 2.83
5161 5487 7.993183 CCAAGATGGTAGTTTCAGGTATATTGT 59.007 37.037 0.00 0.00 31.35 2.71
5162 5488 7.041098 GCCAAGATGGTAGTTTCAGGTATATTG 60.041 40.741 0.00 0.00 40.46 1.90
5163 5489 6.998673 GCCAAGATGGTAGTTTCAGGTATATT 59.001 38.462 0.00 0.00 40.46 1.28
5164 5490 6.101150 TGCCAAGATGGTAGTTTCAGGTATAT 59.899 38.462 0.00 0.00 40.46 0.86
5165 5491 5.427157 TGCCAAGATGGTAGTTTCAGGTATA 59.573 40.000 0.00 0.00 40.46 1.47
5166 5492 4.227300 TGCCAAGATGGTAGTTTCAGGTAT 59.773 41.667 0.00 0.00 40.46 2.73
5167 5493 3.585289 TGCCAAGATGGTAGTTTCAGGTA 59.415 43.478 0.00 0.00 40.46 3.08
5168 5494 2.375174 TGCCAAGATGGTAGTTTCAGGT 59.625 45.455 0.00 0.00 40.46 4.00
5169 5495 3.071874 TGCCAAGATGGTAGTTTCAGG 57.928 47.619 0.00 0.00 40.46 3.86
5170 5496 3.820467 TGTTGCCAAGATGGTAGTTTCAG 59.180 43.478 0.00 0.00 40.46 3.02
5171 5497 3.826524 TGTTGCCAAGATGGTAGTTTCA 58.173 40.909 0.00 0.00 40.46 2.69
5172 5498 6.498304 CATATGTTGCCAAGATGGTAGTTTC 58.502 40.000 0.00 0.00 40.46 2.78
5173 5499 5.163519 GCATATGTTGCCAAGATGGTAGTTT 60.164 40.000 4.29 0.00 46.15 2.66
5174 5500 4.339247 GCATATGTTGCCAAGATGGTAGTT 59.661 41.667 4.29 0.00 46.15 2.24
5175 5501 3.885297 GCATATGTTGCCAAGATGGTAGT 59.115 43.478 4.29 0.00 46.15 2.73
5176 5502 4.494350 GCATATGTTGCCAAGATGGTAG 57.506 45.455 4.29 0.00 46.15 3.18
5188 5514 1.959042 AAGAGGAGCGGCATATGTTG 58.041 50.000 1.45 0.00 0.00 3.33
5189 5515 3.307059 GGATAAGAGGAGCGGCATATGTT 60.307 47.826 1.45 0.00 0.00 2.71
5190 5516 2.234908 GGATAAGAGGAGCGGCATATGT 59.765 50.000 1.45 0.00 0.00 2.29
5191 5517 2.234661 TGGATAAGAGGAGCGGCATATG 59.765 50.000 1.45 0.00 0.00 1.78
5192 5518 2.540383 TGGATAAGAGGAGCGGCATAT 58.460 47.619 1.45 0.00 0.00 1.78
5193 5519 2.009681 TGGATAAGAGGAGCGGCATA 57.990 50.000 1.45 0.00 0.00 3.14
5194 5520 1.356124 ATGGATAAGAGGAGCGGCAT 58.644 50.000 1.45 0.00 0.00 4.40
5195 5521 2.009681 TATGGATAAGAGGAGCGGCA 57.990 50.000 1.45 0.00 0.00 5.69
5196 5522 2.497675 TCATATGGATAAGAGGAGCGGC 59.502 50.000 2.13 0.00 0.00 6.53
5197 5523 4.161189 ACATCATATGGATAAGAGGAGCGG 59.839 45.833 2.13 0.00 33.95 5.52
5198 5524 5.336150 ACATCATATGGATAAGAGGAGCG 57.664 43.478 2.13 0.00 33.95 5.03
5199 5525 6.183360 CCCTACATCATATGGATAAGAGGAGC 60.183 46.154 2.13 0.00 33.29 4.70
5200 5526 7.128751 TCCCTACATCATATGGATAAGAGGAG 58.871 42.308 2.13 0.00 33.29 3.69
5201 5527 7.056522 TCCCTACATCATATGGATAAGAGGA 57.943 40.000 2.13 0.00 33.29 3.71
5202 5528 7.688820 GCATCCCTACATCATATGGATAAGAGG 60.689 44.444 2.13 3.08 34.12 3.69
5203 5529 7.070946 AGCATCCCTACATCATATGGATAAGAG 59.929 40.741 2.13 0.00 34.12 2.85
5204 5530 6.905215 AGCATCCCTACATCATATGGATAAGA 59.095 38.462 2.13 0.00 34.12 2.10
5205 5531 7.134362 AGCATCCCTACATCATATGGATAAG 57.866 40.000 2.13 0.00 34.12 1.73
5206 5532 7.202038 GCTAGCATCCCTACATCATATGGATAA 60.202 40.741 10.63 0.00 34.12 1.75
5207 5533 6.268617 GCTAGCATCCCTACATCATATGGATA 59.731 42.308 10.63 0.00 34.12 2.59
5208 5534 5.071519 GCTAGCATCCCTACATCATATGGAT 59.928 44.000 10.63 0.00 36.26 3.41
5209 5535 4.406972 GCTAGCATCCCTACATCATATGGA 59.593 45.833 10.63 0.00 33.60 3.41
5210 5536 4.408270 AGCTAGCATCCCTACATCATATGG 59.592 45.833 18.83 0.00 33.60 2.74
5211 5537 5.358090 CAGCTAGCATCCCTACATCATATG 58.642 45.833 18.83 0.00 0.00 1.78
5212 5538 4.408270 CCAGCTAGCATCCCTACATCATAT 59.592 45.833 18.83 0.00 0.00 1.78
5213 5539 3.771479 CCAGCTAGCATCCCTACATCATA 59.229 47.826 18.83 0.00 0.00 2.15
5214 5540 2.570752 CCAGCTAGCATCCCTACATCAT 59.429 50.000 18.83 0.00 0.00 2.45
5215 5541 1.973515 CCAGCTAGCATCCCTACATCA 59.026 52.381 18.83 0.00 0.00 3.07
5216 5542 1.277557 CCCAGCTAGCATCCCTACATC 59.722 57.143 18.83 0.00 0.00 3.06
5217 5543 1.356124 CCCAGCTAGCATCCCTACAT 58.644 55.000 18.83 0.00 0.00 2.29
5218 5544 1.410850 GCCCAGCTAGCATCCCTACA 61.411 60.000 18.83 0.00 0.00 2.74
5219 5545 1.373059 GCCCAGCTAGCATCCCTAC 59.627 63.158 18.83 0.00 0.00 3.18
5220 5546 1.843376 GGCCCAGCTAGCATCCCTA 60.843 63.158 18.83 0.00 0.00 3.53
5221 5547 3.174265 GGCCCAGCTAGCATCCCT 61.174 66.667 18.83 0.00 0.00 4.20
5222 5548 3.492353 TGGCCCAGCTAGCATCCC 61.492 66.667 18.83 11.71 0.00 3.85
5223 5549 1.410850 TAGTGGCCCAGCTAGCATCC 61.411 60.000 18.83 12.03 0.00 3.51
5224 5550 0.250081 GTAGTGGCCCAGCTAGCATC 60.250 60.000 18.83 2.23 0.00 3.91
5225 5551 1.700042 GGTAGTGGCCCAGCTAGCAT 61.700 60.000 18.83 0.00 36.18 3.79
5226 5552 2.367202 GGTAGTGGCCCAGCTAGCA 61.367 63.158 18.83 0.00 36.18 3.49
5227 5553 2.506472 GGTAGTGGCCCAGCTAGC 59.494 66.667 6.62 6.62 0.00 3.42
5235 5561 0.608308 GAGTGGTTTGGGTAGTGGCC 60.608 60.000 0.00 0.00 0.00 5.36
5236 5562 0.109723 TGAGTGGTTTGGGTAGTGGC 59.890 55.000 0.00 0.00 0.00 5.01
5237 5563 1.544759 GGTGAGTGGTTTGGGTAGTGG 60.545 57.143 0.00 0.00 0.00 4.00
5238 5564 1.420138 AGGTGAGTGGTTTGGGTAGTG 59.580 52.381 0.00 0.00 0.00 2.74
5239 5565 1.815757 AGGTGAGTGGTTTGGGTAGT 58.184 50.000 0.00 0.00 0.00 2.73
5240 5566 4.070009 GTTTAGGTGAGTGGTTTGGGTAG 58.930 47.826 0.00 0.00 0.00 3.18
5241 5567 3.181441 GGTTTAGGTGAGTGGTTTGGGTA 60.181 47.826 0.00 0.00 0.00 3.69
5242 5568 2.423803 GGTTTAGGTGAGTGGTTTGGGT 60.424 50.000 0.00 0.00 0.00 4.51
5243 5569 2.158519 AGGTTTAGGTGAGTGGTTTGGG 60.159 50.000 0.00 0.00 0.00 4.12
5244 5570 3.223674 AGGTTTAGGTGAGTGGTTTGG 57.776 47.619 0.00 0.00 0.00 3.28
5245 5571 5.127491 TGTTAGGTTTAGGTGAGTGGTTTG 58.873 41.667 0.00 0.00 0.00 2.93
5246 5572 5.376756 TGTTAGGTTTAGGTGAGTGGTTT 57.623 39.130 0.00 0.00 0.00 3.27
5247 5573 5.072600 TGATGTTAGGTTTAGGTGAGTGGTT 59.927 40.000 0.00 0.00 0.00 3.67
5248 5574 4.595781 TGATGTTAGGTTTAGGTGAGTGGT 59.404 41.667 0.00 0.00 0.00 4.16
5249 5575 5.160607 TGATGTTAGGTTTAGGTGAGTGG 57.839 43.478 0.00 0.00 0.00 4.00
5250 5576 7.504924 TTTTGATGTTAGGTTTAGGTGAGTG 57.495 36.000 0.00 0.00 0.00 3.51
5251 5577 6.206829 GCTTTTGATGTTAGGTTTAGGTGAGT 59.793 38.462 0.00 0.00 0.00 3.41
5252 5578 6.349363 GGCTTTTGATGTTAGGTTTAGGTGAG 60.349 42.308 0.00 0.00 0.00 3.51
5253 5579 5.475564 GGCTTTTGATGTTAGGTTTAGGTGA 59.524 40.000 0.00 0.00 0.00 4.02
5254 5580 5.619086 CGGCTTTTGATGTTAGGTTTAGGTG 60.619 44.000 0.00 0.00 0.00 4.00
5255 5581 4.457949 CGGCTTTTGATGTTAGGTTTAGGT 59.542 41.667 0.00 0.00 0.00 3.08
5256 5582 4.142469 CCGGCTTTTGATGTTAGGTTTAGG 60.142 45.833 0.00 0.00 0.00 2.69
5257 5583 4.698304 TCCGGCTTTTGATGTTAGGTTTAG 59.302 41.667 0.00 0.00 0.00 1.85
5258 5584 4.653868 TCCGGCTTTTGATGTTAGGTTTA 58.346 39.130 0.00 0.00 0.00 2.01
5259 5585 3.492337 TCCGGCTTTTGATGTTAGGTTT 58.508 40.909 0.00 0.00 0.00 3.27
5260 5586 3.149005 TCCGGCTTTTGATGTTAGGTT 57.851 42.857 0.00 0.00 0.00 3.50
5261 5587 2.871096 TCCGGCTTTTGATGTTAGGT 57.129 45.000 0.00 0.00 0.00 3.08
5262 5588 2.159379 GCTTCCGGCTTTTGATGTTAGG 60.159 50.000 0.00 0.00 38.06 2.69
5263 5589 2.159379 GGCTTCCGGCTTTTGATGTTAG 60.159 50.000 0.00 0.00 41.46 2.34
5264 5590 1.816224 GGCTTCCGGCTTTTGATGTTA 59.184 47.619 0.00 0.00 41.46 2.41
5265 5591 0.603065 GGCTTCCGGCTTTTGATGTT 59.397 50.000 0.00 0.00 41.46 2.71
5266 5592 1.250840 GGGCTTCCGGCTTTTGATGT 61.251 55.000 0.00 0.00 41.46 3.06
5267 5593 1.512694 GGGCTTCCGGCTTTTGATG 59.487 57.895 0.00 0.00 41.46 3.07
5268 5594 1.682344 GGGGCTTCCGGCTTTTGAT 60.682 57.895 0.00 0.00 41.46 2.57
5269 5595 2.282887 GGGGCTTCCGGCTTTTGA 60.283 61.111 0.00 0.00 41.46 2.69
5270 5596 2.600173 TGGGGCTTCCGGCTTTTG 60.600 61.111 0.00 0.00 41.46 2.44
5271 5597 2.283173 CTGGGGCTTCCGGCTTTT 60.283 61.111 0.00 0.00 41.46 2.27
5283 5609 3.479203 TATGTGGCTCGGCTGGGG 61.479 66.667 0.00 0.00 0.00 4.96
5284 5610 2.203070 GTATGTGGCTCGGCTGGG 60.203 66.667 0.00 0.00 0.00 4.45
5285 5611 2.203070 GGTATGTGGCTCGGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
5286 5612 2.586079 CGGTATGTGGCTCGGCTG 60.586 66.667 0.00 0.00 0.00 4.85
5287 5613 3.849951 CCGGTATGTGGCTCGGCT 61.850 66.667 0.00 0.00 35.95 5.52
5288 5614 4.910585 CCCGGTATGTGGCTCGGC 62.911 72.222 0.00 0.00 41.02 5.54
5289 5615 3.441011 GACCCGGTATGTGGCTCGG 62.441 68.421 0.00 0.00 41.90 4.63
5290 5616 2.106332 GACCCGGTATGTGGCTCG 59.894 66.667 0.00 0.00 0.00 5.03
5291 5617 1.144057 CAGACCCGGTATGTGGCTC 59.856 63.158 3.86 0.00 0.00 4.70
5292 5618 2.367202 CCAGACCCGGTATGTGGCT 61.367 63.158 11.23 0.00 0.00 4.75
5293 5619 2.189521 CCAGACCCGGTATGTGGC 59.810 66.667 11.23 0.00 0.00 5.01
5294 5620 2.742116 CCCCAGACCCGGTATGTGG 61.742 68.421 11.23 11.22 0.00 4.17
5295 5621 2.908015 CCCCAGACCCGGTATGTG 59.092 66.667 11.23 0.00 0.00 3.21
5296 5622 3.087906 GCCCCAGACCCGGTATGT 61.088 66.667 11.23 0.00 0.00 2.29
5297 5623 3.087253 TGCCCCAGACCCGGTATG 61.087 66.667 5.11 5.11 0.00 2.39
5298 5624 3.087906 GTGCCCCAGACCCGGTAT 61.088 66.667 0.00 0.00 0.00 2.73
5299 5625 4.642488 TGTGCCCCAGACCCGGTA 62.642 66.667 0.00 0.00 0.00 4.02
5301 5627 3.995506 GATTGTGCCCCAGACCCGG 62.996 68.421 0.00 0.00 0.00 5.73
5302 5628 2.438434 GATTGTGCCCCAGACCCG 60.438 66.667 0.00 0.00 0.00 5.28
5303 5629 2.043953 GGATTGTGCCCCAGACCC 60.044 66.667 0.00 0.00 0.00 4.46
5304 5630 2.438434 CGGATTGTGCCCCAGACC 60.438 66.667 0.00 0.00 0.00 3.85
5305 5631 2.438434 CCGGATTGTGCCCCAGAC 60.438 66.667 0.00 0.00 0.00 3.51
5306 5632 2.933287 ACCGGATTGTGCCCCAGA 60.933 61.111 9.46 0.00 0.00 3.86
5307 5633 2.438434 GACCGGATTGTGCCCCAG 60.438 66.667 9.46 0.00 0.00 4.45
5308 5634 3.253061 TGACCGGATTGTGCCCCA 61.253 61.111 9.46 0.00 0.00 4.96
5309 5635 2.438434 CTGACCGGATTGTGCCCC 60.438 66.667 9.46 0.00 0.00 5.80
5310 5636 1.745489 GTCTGACCGGATTGTGCCC 60.745 63.158 9.46 0.00 0.00 5.36
5311 5637 2.100631 CGTCTGACCGGATTGTGCC 61.101 63.158 9.46 0.00 0.00 5.01
5312 5638 2.740714 GCGTCTGACCGGATTGTGC 61.741 63.158 9.46 0.21 0.00 4.57
5313 5639 1.374125 TGCGTCTGACCGGATTGTG 60.374 57.895 9.46 0.00 0.00 3.33
5314 5640 1.374252 GTGCGTCTGACCGGATTGT 60.374 57.895 9.46 0.00 0.00 2.71
5315 5641 0.670546 AAGTGCGTCTGACCGGATTG 60.671 55.000 9.46 0.00 0.00 2.67
5316 5642 0.670546 CAAGTGCGTCTGACCGGATT 60.671 55.000 9.46 0.00 0.00 3.01
5317 5643 1.079819 CAAGTGCGTCTGACCGGAT 60.080 57.895 9.46 0.00 0.00 4.18
5318 5644 2.338620 CAAGTGCGTCTGACCGGA 59.661 61.111 9.46 0.00 0.00 5.14
5319 5645 2.029073 ACAAGTGCGTCTGACCGG 59.971 61.111 0.00 0.00 0.00 5.28
5320 5646 1.548973 GACACAAGTGCGTCTGACCG 61.549 60.000 1.55 0.00 0.00 4.79
5321 5647 1.548973 CGACACAAGTGCGTCTGACC 61.549 60.000 1.55 0.00 0.00 4.02
5322 5648 0.870307 ACGACACAAGTGCGTCTGAC 60.870 55.000 13.88 0.00 38.31 3.51
5323 5649 0.594028 GACGACACAAGTGCGTCTGA 60.594 55.000 26.92 0.00 46.29 3.27
5324 5650 1.846648 GACGACACAAGTGCGTCTG 59.153 57.895 26.92 11.33 46.29 3.51
5325 5651 1.657487 CGACGACACAAGTGCGTCT 60.657 57.895 28.85 11.46 46.90 4.18
5326 5652 2.837280 CGACGACACAAGTGCGTC 59.163 61.111 25.63 25.63 46.31 5.19
5327 5653 3.327754 GCGACGACACAAGTGCGT 61.328 61.111 17.70 17.70 42.56 5.24
5328 5654 4.059459 GGCGACGACACAAGTGCG 62.059 66.667 0.00 12.88 36.62 5.34
5340 5666 3.195698 GTGGAAGATGGCGGCGAC 61.196 66.667 12.98 9.31 0.00 5.19
5341 5667 3.247056 TTGTGGAAGATGGCGGCGA 62.247 57.895 12.98 0.00 0.00 5.54
5342 5668 2.745884 TTGTGGAAGATGGCGGCG 60.746 61.111 0.51 0.51 0.00 6.46
5343 5669 1.648467 GACTTGTGGAAGATGGCGGC 61.648 60.000 0.00 0.00 32.98 6.53
5344 5670 1.026718 GGACTTGTGGAAGATGGCGG 61.027 60.000 0.00 0.00 32.98 6.13
5345 5671 1.361668 CGGACTTGTGGAAGATGGCG 61.362 60.000 0.00 0.00 32.98 5.69
5346 5672 0.321653 ACGGACTTGTGGAAGATGGC 60.322 55.000 0.00 0.00 32.98 4.40
5347 5673 1.276421 AGACGGACTTGTGGAAGATGG 59.724 52.381 0.00 0.00 32.98 3.51
5348 5674 2.751166 AGACGGACTTGTGGAAGATG 57.249 50.000 0.00 0.00 32.98 2.90
5349 5675 2.632996 TGAAGACGGACTTGTGGAAGAT 59.367 45.455 0.00 0.00 39.13 2.40
5350 5676 2.035961 CTGAAGACGGACTTGTGGAAGA 59.964 50.000 0.00 0.00 39.13 2.87
5351 5677 2.035961 TCTGAAGACGGACTTGTGGAAG 59.964 50.000 0.00 0.00 39.13 3.46
5352 5678 2.036387 TCTGAAGACGGACTTGTGGAA 58.964 47.619 0.00 0.00 39.13 3.53
5353 5679 1.699730 TCTGAAGACGGACTTGTGGA 58.300 50.000 0.00 0.00 39.13 4.02
5354 5680 2.751166 ATCTGAAGACGGACTTGTGG 57.249 50.000 0.00 0.00 39.13 4.17
5355 5681 7.706607 TCAATATAATCTGAAGACGGACTTGTG 59.293 37.037 0.00 0.00 39.13 3.33
5356 5682 7.782049 TCAATATAATCTGAAGACGGACTTGT 58.218 34.615 0.00 0.00 39.13 3.16
5357 5683 8.648557 TTCAATATAATCTGAAGACGGACTTG 57.351 34.615 0.00 0.00 39.13 3.16
5358 5684 9.482627 GATTCAATATAATCTGAAGACGGACTT 57.517 33.333 0.00 0.00 35.14 3.01
5359 5685 8.865090 AGATTCAATATAATCTGAAGACGGACT 58.135 33.333 0.75 0.00 43.09 3.85
5360 5686 9.482627 AAGATTCAATATAATCTGAAGACGGAC 57.517 33.333 2.19 0.00 43.75 4.79
5361 5687 9.698309 GAAGATTCAATATAATCTGAAGACGGA 57.302 33.333 2.19 0.00 43.75 4.69
5362 5688 9.703892 AGAAGATTCAATATAATCTGAAGACGG 57.296 33.333 2.19 0.00 43.75 4.79
5375 5701 8.970859 CCTTCACAAGGTAGAAGATTCAATAT 57.029 34.615 0.00 0.00 42.95 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.