Multiple sequence alignment - TraesCS3D01G213400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G213400 chr3D 100.000 3978 0 0 1 3978 287302282 287298305 0.000000e+00 7347
1 TraesCS3D01G213400 chr3D 97.317 820 5 2 1 803 94439621 94438802 0.000000e+00 1376
2 TraesCS3D01G213400 chr3D 94.634 820 25 4 1 802 502027545 502028363 0.000000e+00 1253
3 TraesCS3D01G213400 chr3D 93.805 565 15 6 3434 3978 14341338 14340774 0.000000e+00 832
4 TraesCS3D01G213400 chr3D 93.628 565 16 5 3434 3978 370535922 370536486 0.000000e+00 826
5 TraesCS3D01G213400 chr3D 86.544 379 15 17 452 803 287308953 287309322 6.240000e-103 385
6 TraesCS3D01G213400 chr3D 83.747 363 45 11 451 801 184635594 184635954 8.240000e-87 331
7 TraesCS3D01G213400 chr3B 96.751 2524 60 10 814 3326 380515942 380513430 0.000000e+00 4187
8 TraesCS3D01G213400 chr3B 93.805 565 15 5 3434 3978 466279379 466279943 0.000000e+00 832
9 TraesCS3D01G213400 chr3A 95.946 2590 81 14 841 3424 376786282 376783711 0.000000e+00 4180
10 TraesCS3D01G213400 chr4D 97.680 819 2 2 1 802 41949107 41949925 0.000000e+00 1391
11 TraesCS3D01G213400 chr4D 97.044 812 7 2 1 795 480148044 480148855 0.000000e+00 1351
12 TraesCS3D01G213400 chr4D 93.366 829 28 10 1 803 481099009 481098182 0.000000e+00 1201
13 TraesCS3D01G213400 chr4D 92.647 272 7 2 546 806 480140376 480140107 2.900000e-101 379
14 TraesCS3D01G213400 chr2D 96.229 822 12 3 1 803 601044258 601045079 0.000000e+00 1328
15 TraesCS3D01G213400 chr6D 96.121 825 7 4 1 806 400558682 400557864 0.000000e+00 1323
16 TraesCS3D01G213400 chr7D 95.244 820 20 8 1 802 428977266 428978084 0.000000e+00 1280
17 TraesCS3D01G213400 chr7D 94.641 821 23 5 1 803 105213247 105212430 0.000000e+00 1253
18 TraesCS3D01G213400 chr7D 94.296 824 24 10 1 802 78261558 78262380 0.000000e+00 1240
19 TraesCS3D01G213400 chr7D 95.708 233 8 2 3552 3783 199913694 199913925 1.350000e-99 374
20 TraesCS3D01G213400 chr7D 91.379 232 9 1 3758 3978 252067730 252067499 1.390000e-79 307
21 TraesCS3D01G213400 chr7D 95.376 173 8 0 3806 3978 199913638 199913466 3.920000e-70 276
22 TraesCS3D01G213400 chr1D 93.805 565 15 5 3434 3978 28070331 28070895 0.000000e+00 832
23 TraesCS3D01G213400 chr7B 93.628 565 16 5 3434 3978 254083546 254084110 0.000000e+00 826
24 TraesCS3D01G213400 chr2A 93.628 565 16 5 3434 3978 677885849 677885285 0.000000e+00 826
25 TraesCS3D01G213400 chr2B 93.274 565 18 5 3434 3978 24944047 24943483 0.000000e+00 815
26 TraesCS3D01G213400 chr6B 92.623 488 16 5 3511 3978 675625512 675625025 0.000000e+00 684
27 TraesCS3D01G213400 chr1A 88.850 565 42 6 3434 3978 313133385 313133948 0.000000e+00 675
28 TraesCS3D01G213400 chr5A 88.496 565 45 5 3434 3978 591982917 591982353 0.000000e+00 665


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G213400 chr3D 287298305 287302282 3977 True 7347 7347 100.000 1 3978 1 chr3D.!!$R3 3977
1 TraesCS3D01G213400 chr3D 94438802 94439621 819 True 1376 1376 97.317 1 803 1 chr3D.!!$R2 802
2 TraesCS3D01G213400 chr3D 502027545 502028363 818 False 1253 1253 94.634 1 802 1 chr3D.!!$F4 801
3 TraesCS3D01G213400 chr3D 14340774 14341338 564 True 832 832 93.805 3434 3978 1 chr3D.!!$R1 544
4 TraesCS3D01G213400 chr3D 370535922 370536486 564 False 826 826 93.628 3434 3978 1 chr3D.!!$F3 544
5 TraesCS3D01G213400 chr3B 380513430 380515942 2512 True 4187 4187 96.751 814 3326 1 chr3B.!!$R1 2512
6 TraesCS3D01G213400 chr3B 466279379 466279943 564 False 832 832 93.805 3434 3978 1 chr3B.!!$F1 544
7 TraesCS3D01G213400 chr3A 376783711 376786282 2571 True 4180 4180 95.946 841 3424 1 chr3A.!!$R1 2583
8 TraesCS3D01G213400 chr4D 41949107 41949925 818 False 1391 1391 97.680 1 802 1 chr4D.!!$F1 801
9 TraesCS3D01G213400 chr4D 480148044 480148855 811 False 1351 1351 97.044 1 795 1 chr4D.!!$F2 794
10 TraesCS3D01G213400 chr4D 481098182 481099009 827 True 1201 1201 93.366 1 803 1 chr4D.!!$R2 802
11 TraesCS3D01G213400 chr2D 601044258 601045079 821 False 1328 1328 96.229 1 803 1 chr2D.!!$F1 802
12 TraesCS3D01G213400 chr6D 400557864 400558682 818 True 1323 1323 96.121 1 806 1 chr6D.!!$R1 805
13 TraesCS3D01G213400 chr7D 428977266 428978084 818 False 1280 1280 95.244 1 802 1 chr7D.!!$F3 801
14 TraesCS3D01G213400 chr7D 105212430 105213247 817 True 1253 1253 94.641 1 803 1 chr7D.!!$R1 802
15 TraesCS3D01G213400 chr7D 78261558 78262380 822 False 1240 1240 94.296 1 802 1 chr7D.!!$F1 801
16 TraesCS3D01G213400 chr1D 28070331 28070895 564 False 832 832 93.805 3434 3978 1 chr1D.!!$F1 544
17 TraesCS3D01G213400 chr7B 254083546 254084110 564 False 826 826 93.628 3434 3978 1 chr7B.!!$F1 544
18 TraesCS3D01G213400 chr2A 677885285 677885849 564 True 826 826 93.628 3434 3978 1 chr2A.!!$R1 544
19 TraesCS3D01G213400 chr2B 24943483 24944047 564 True 815 815 93.274 3434 3978 1 chr2B.!!$R1 544
20 TraesCS3D01G213400 chr1A 313133385 313133948 563 False 675 675 88.850 3434 3978 1 chr1A.!!$F1 544
21 TraesCS3D01G213400 chr5A 591982353 591982917 564 True 665 665 88.496 3434 3978 1 chr5A.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 271 1.202615 CCATCATGTGCAGAGGACGAT 60.203 52.381 0.0 0.0 0.0 3.73 F
1234 1262 0.179089 CATCCTCTCCCTCGCACTTG 60.179 60.000 0.0 0.0 0.0 3.16 F
1440 1475 0.517316 GTTCTCATTCCGTGTGTGCC 59.483 55.000 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 1327 0.394352 GATCAAGGTGGGGAATGCGT 60.394 55.000 0.0 0.0 0.00 5.24 R
2449 2486 0.250295 ACGTGAGGCTTAAAGCAGCA 60.250 50.000 0.0 0.0 44.75 4.41 R
3326 3368 1.135859 CGCAGCTCCTCAAACAATGTC 60.136 52.381 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 271 1.202615 CCATCATGTGCAGAGGACGAT 60.203 52.381 0.00 0.00 0.00 3.73
353 362 2.591085 ACCTAACCCTAACCCTAGCTCT 59.409 50.000 0.00 0.00 0.00 4.09
806 834 4.211374 ACTTCTGTGCAATTTACTCGACAC 59.789 41.667 0.00 0.00 0.00 3.67
807 835 3.064207 TCTGTGCAATTTACTCGACACC 58.936 45.455 0.00 0.00 0.00 4.16
808 836 2.805671 CTGTGCAATTTACTCGACACCA 59.194 45.455 0.00 0.00 0.00 4.17
809 837 2.805671 TGTGCAATTTACTCGACACCAG 59.194 45.455 0.00 0.00 0.00 4.00
810 838 1.804151 TGCAATTTACTCGACACCAGC 59.196 47.619 0.00 0.00 0.00 4.85
811 839 1.804151 GCAATTTACTCGACACCAGCA 59.196 47.619 0.00 0.00 0.00 4.41
812 840 2.412847 GCAATTTACTCGACACCAGCAC 60.413 50.000 0.00 0.00 0.00 4.40
1054 1082 4.767255 CCAGAGGTGCCGCCAGTC 62.767 72.222 0.00 0.00 40.61 3.51
1055 1083 4.767255 CAGAGGTGCCGCCAGTCC 62.767 72.222 0.00 0.00 40.61 3.85
1115 1143 4.574828 TCTTGATGATGCTGTGATGTGATG 59.425 41.667 0.00 0.00 0.00 3.07
1116 1144 3.881220 TGATGATGCTGTGATGTGATGT 58.119 40.909 0.00 0.00 0.00 3.06
1117 1145 3.625764 TGATGATGCTGTGATGTGATGTG 59.374 43.478 0.00 0.00 0.00 3.21
1118 1146 3.337694 TGATGCTGTGATGTGATGTGA 57.662 42.857 0.00 0.00 0.00 3.58
1119 1147 3.881220 TGATGCTGTGATGTGATGTGAT 58.119 40.909 0.00 0.00 0.00 3.06
1234 1262 0.179089 CATCCTCTCCCTCGCACTTG 60.179 60.000 0.00 0.00 0.00 3.16
1291 1326 3.384532 TCCCAGTTACGGTCCGCC 61.385 66.667 12.28 0.00 0.00 6.13
1292 1327 3.697747 CCCAGTTACGGTCCGCCA 61.698 66.667 12.28 0.00 34.09 5.69
1385 1420 2.813908 CCTCTGTACCGCCGTTGC 60.814 66.667 0.00 0.00 0.00 4.17
1440 1475 0.517316 GTTCTCATTCCGTGTGTGCC 59.483 55.000 0.00 0.00 0.00 5.01
1485 1522 1.565390 TTGGCCATGGAGGGAGACTG 61.565 60.000 18.40 0.00 38.09 3.51
1543 1580 2.599408 TAGGGACCGTCTCTTCACTT 57.401 50.000 6.16 0.00 0.00 3.16
1567 1604 2.143122 CAACGAGCTGCCAGAACTTTA 58.857 47.619 0.00 0.00 0.00 1.85
1771 1808 4.669728 GTCTAGTATTTGTGCGCTACTACG 59.330 45.833 9.73 6.46 0.00 3.51
1927 1964 2.435938 TAAGCCGCCTTTGCTCCG 60.436 61.111 0.00 0.00 38.34 4.63
2091 2128 8.766493 TTTTATTCGCTGATGAATATTTCACG 57.234 30.769 0.00 0.00 43.48 4.35
2250 2287 3.208594 TCTGCAATATGGTGATCACTGC 58.791 45.455 24.50 23.73 32.53 4.40
2310 2347 4.701765 CTTGAACTCCAGTATCTCCATGG 58.298 47.826 4.97 4.97 35.30 3.66
2392 2429 4.933400 GGTGTATTCGGAAGCAAAGAACTA 59.067 41.667 0.00 0.00 0.00 2.24
2413 2450 1.661617 TCAGTTGGTGTTGACGTTTCG 59.338 47.619 0.00 0.00 0.00 3.46
2449 2486 7.370383 CAACTAGCAATTTCACCAAGTACAAT 58.630 34.615 0.00 0.00 0.00 2.71
2509 2547 6.323210 TCACTCCACCTGTAAGTATCTCTA 57.677 41.667 0.00 0.00 0.00 2.43
2570 2608 9.638176 ATTCTTTCAAGATTGATAGGTAATGCT 57.362 29.630 11.50 0.00 37.03 3.79
2618 2656 0.593128 GTCAAGTGCGGTGCTTCATT 59.407 50.000 0.00 0.00 0.00 2.57
2621 2659 1.174712 AAGTGCGGTGCTTCATTGCT 61.175 50.000 0.00 0.00 0.00 3.91
2622 2660 1.174712 AGTGCGGTGCTTCATTGCTT 61.175 50.000 0.00 0.00 0.00 3.91
2896 2934 0.110486 AATGGCGACCCAAGTCACTT 59.890 50.000 0.00 0.00 46.14 3.16
2923 2961 3.220999 CTCCGGCGAGGTTGACACA 62.221 63.158 9.30 0.00 41.99 3.72
3061 3100 0.846427 TGGCCCCAGGTCATCTCTTT 60.846 55.000 0.00 0.00 29.54 2.52
3184 3223 3.181497 CGCCTGTCAATAATTTCTGGTGG 60.181 47.826 0.00 0.00 0.00 4.61
3195 3234 8.674607 CAATAATTTCTGGTGGTTAAGACCTAC 58.325 37.037 5.41 0.00 46.66 3.18
3326 3368 4.445453 TCTTGGATGCATGCTTAGTACTG 58.555 43.478 20.33 2.81 0.00 2.74
3354 3396 2.959357 GAGGAGCTGCGTGTTGTGC 61.959 63.158 0.00 0.00 0.00 4.57
3358 3400 1.640428 GAGCTGCGTGTTGTGCTATA 58.360 50.000 0.00 0.00 35.76 1.31
3359 3401 1.590238 GAGCTGCGTGTTGTGCTATAG 59.410 52.381 0.00 0.00 35.76 1.31
3360 3402 1.066858 AGCTGCGTGTTGTGCTATAGT 60.067 47.619 0.84 0.00 33.64 2.12
3361 3403 1.061131 GCTGCGTGTTGTGCTATAGTG 59.939 52.381 0.84 0.00 0.00 2.74
3362 3404 1.660607 CTGCGTGTTGTGCTATAGTGG 59.339 52.381 0.84 0.00 0.00 4.00
3363 3405 1.001520 TGCGTGTTGTGCTATAGTGGT 59.998 47.619 0.84 0.00 0.00 4.16
3364 3406 2.231721 TGCGTGTTGTGCTATAGTGGTA 59.768 45.455 0.84 0.00 0.00 3.25
3366 3408 3.061697 GCGTGTTGTGCTATAGTGGTAAC 59.938 47.826 0.84 3.55 0.00 2.50
3367 3409 3.302434 CGTGTTGTGCTATAGTGGTAACG 59.698 47.826 0.84 2.21 42.51 3.18
3368 3410 4.487948 GTGTTGTGCTATAGTGGTAACGA 58.512 43.478 0.84 0.00 42.51 3.85
3369 3411 5.107133 GTGTTGTGCTATAGTGGTAACGAT 58.893 41.667 0.84 0.00 42.51 3.73
3370 3412 5.579511 GTGTTGTGCTATAGTGGTAACGATT 59.420 40.000 0.84 0.00 42.51 3.34
3372 3414 7.276218 GTGTTGTGCTATAGTGGTAACGATTTA 59.724 37.037 0.84 0.00 42.51 1.40
3373 3415 7.982919 TGTTGTGCTATAGTGGTAACGATTTAT 59.017 33.333 0.84 0.00 42.51 1.40
3399 3441 7.833285 AAGAAGCTAAATAACAAAACCTGGA 57.167 32.000 0.00 0.00 0.00 3.86
3401 3443 7.658261 AGAAGCTAAATAACAAAACCTGGAAC 58.342 34.615 0.00 0.00 0.00 3.62
3404 3446 7.962441 AGCTAAATAACAAAACCTGGAACAAT 58.038 30.769 0.00 0.00 38.70 2.71
3417 3459 5.721960 ACCTGGAACAATAGTCTGTCATACT 59.278 40.000 0.00 0.00 38.70 2.12
3424 3466 6.586344 ACAATAGTCTGTCATACTTGGGATG 58.414 40.000 0.00 0.00 0.00 3.51
3425 3467 6.156949 ACAATAGTCTGTCATACTTGGGATGT 59.843 38.462 0.00 0.00 0.00 3.06
3426 3468 4.478206 AGTCTGTCATACTTGGGATGTG 57.522 45.455 0.00 0.00 0.00 3.21
3427 3469 3.198635 AGTCTGTCATACTTGGGATGTGG 59.801 47.826 0.00 0.00 0.00 4.17
3428 3470 3.055094 GTCTGTCATACTTGGGATGTGGT 60.055 47.826 0.00 0.00 0.00 4.16
3429 3471 4.161565 GTCTGTCATACTTGGGATGTGGTA 59.838 45.833 0.00 0.00 0.00 3.25
3430 3472 4.780554 TCTGTCATACTTGGGATGTGGTAA 59.219 41.667 0.00 0.00 0.00 2.85
3431 3473 4.839121 TGTCATACTTGGGATGTGGTAAC 58.161 43.478 0.00 0.00 0.00 2.50
3432 3474 3.869246 GTCATACTTGGGATGTGGTAACG 59.131 47.826 0.00 0.00 42.51 3.18
3545 3587 2.779755 TCGGATATTGCACCACAAGT 57.220 45.000 0.00 0.00 42.87 3.16
3585 3636 3.906846 AGATGGAGTAAGGGCCTATTCTG 59.093 47.826 6.41 0.00 0.00 3.02
3706 3757 2.691011 CTCTAGGCTTAAGCGGAGAGTT 59.309 50.000 30.80 13.30 41.62 3.01
3715 3766 2.317530 AGCGGAGAGTTATTGCCTTC 57.682 50.000 0.00 0.00 0.00 3.46
3841 3903 3.062099 CACATACACCGTATCAAGCACAC 59.938 47.826 0.00 0.00 0.00 3.82
3917 3979 0.618458 CCTCGACCATGGGAAAAGGA 59.382 55.000 18.09 2.80 0.00 3.36
3960 4022 0.409484 CTGGGAGGGGTTGGACATTT 59.591 55.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 271 7.432869 AGGATTTCGTTTGATTTGATTTGTCA 58.567 30.769 0.00 0.00 0.00 3.58
353 362 6.575649 GCTGAACCAGGTAAGTTACTCCATTA 60.576 42.308 12.65 0.00 31.21 1.90
806 834 1.452110 TTGGATGATTCGTGTGCTGG 58.548 50.000 0.00 0.00 0.00 4.85
807 835 3.557577 TTTTGGATGATTCGTGTGCTG 57.442 42.857 0.00 0.00 0.00 4.41
808 836 3.181507 CGATTTTGGATGATTCGTGTGCT 60.182 43.478 0.00 0.00 0.00 4.40
809 837 3.100817 CGATTTTGGATGATTCGTGTGC 58.899 45.455 0.00 0.00 0.00 4.57
810 838 3.100817 GCGATTTTGGATGATTCGTGTG 58.899 45.455 0.00 0.00 32.65 3.82
811 839 2.746904 TGCGATTTTGGATGATTCGTGT 59.253 40.909 0.00 0.00 32.65 4.49
812 840 3.063861 TCTGCGATTTTGGATGATTCGTG 59.936 43.478 0.00 0.00 32.65 4.35
1054 1082 1.232792 CAGAGGAGGGGAGAGAGGG 59.767 68.421 0.00 0.00 0.00 4.30
1055 1083 0.859760 ATCAGAGGAGGGGAGAGAGG 59.140 60.000 0.00 0.00 0.00 3.69
1115 1143 2.353889 AGATCTGCGTGCAAATCATCAC 59.646 45.455 10.51 0.00 0.00 3.06
1116 1144 2.353579 CAGATCTGCGTGCAAATCATCA 59.646 45.455 10.38 0.00 0.00 3.07
1117 1145 2.983166 CAGATCTGCGTGCAAATCATC 58.017 47.619 10.38 3.50 0.00 2.92
1291 1326 0.680921 ATCAAGGTGGGGAATGCGTG 60.681 55.000 0.00 0.00 0.00 5.34
1292 1327 0.394352 GATCAAGGTGGGGAATGCGT 60.394 55.000 0.00 0.00 0.00 5.24
1305 1340 5.475273 TGTACCGTAAGTAGTCGATCAAG 57.525 43.478 0.00 0.00 0.00 3.02
1440 1475 5.468072 ACTGAAAACTCTACATGCAGAACAG 59.532 40.000 0.00 5.10 0.00 3.16
1485 1522 2.851263 TGTAACACATGAGGGTCCAC 57.149 50.000 0.00 0.00 0.00 4.02
1567 1604 2.246327 TCAAGGTGAAAGGGAAAAGGGT 59.754 45.455 0.00 0.00 0.00 4.34
1641 1678 9.601810 ACCTAAACCATATACTGATCATGAGTA 57.398 33.333 0.09 0.00 0.00 2.59
1792 1829 0.449388 GCAGCTGTGATTGCCTGTAC 59.551 55.000 16.64 0.00 34.28 2.90
1927 1964 4.608948 TGTGAGAGAAAAAGGGAGAGTC 57.391 45.455 0.00 0.00 0.00 3.36
2091 2128 2.838736 TGTTGTCAGAAGCTGGAAGAC 58.161 47.619 0.00 0.00 34.07 3.01
2276 2313 1.949525 GAGTTCAAGCTGTCAAGGCAA 59.050 47.619 0.00 0.00 0.00 4.52
2310 2347 1.062525 GCATTGACACCGGCGAATC 59.937 57.895 9.30 2.94 0.00 2.52
2392 2429 2.286833 CGAAACGTCAACACCAACTGAT 59.713 45.455 0.00 0.00 0.00 2.90
2413 2450 0.941542 TGCTAGTTGCCGTGTCAAAC 59.058 50.000 0.00 0.00 42.00 2.93
2449 2486 0.250295 ACGTGAGGCTTAAAGCAGCA 60.250 50.000 0.00 0.00 44.75 4.41
2569 2607 9.716531 TTAGTATGGAATCAGATTGCTAATCAG 57.283 33.333 15.07 4.16 40.42 2.90
2570 2608 9.716531 CTTAGTATGGAATCAGATTGCTAATCA 57.283 33.333 15.07 0.00 40.42 2.57
2896 2934 2.678580 TCGCCGGAGATGGTGACA 60.679 61.111 5.05 0.00 43.39 3.58
2923 2961 3.225104 TGTGCTCTTCTCAATTGCCTTT 58.775 40.909 0.00 0.00 0.00 3.11
3015 3053 5.904362 ATTCCAATCCAGCAGAACTTAAC 57.096 39.130 0.00 0.00 0.00 2.01
3016 3054 6.945435 TGTTATTCCAATCCAGCAGAACTTAA 59.055 34.615 0.00 0.00 0.00 1.85
3018 3056 5.324409 TGTTATTCCAATCCAGCAGAACTT 58.676 37.500 0.00 0.00 0.00 2.66
3061 3100 4.502171 TCAAGATCAAAATGAAAGCGCA 57.498 36.364 11.47 0.00 0.00 6.09
3184 3223 7.152645 TGACAAGATTCACAGTAGGTCTTAAC 58.847 38.462 0.00 0.00 0.00 2.01
3326 3368 1.135859 CGCAGCTCCTCAAACAATGTC 60.136 52.381 0.00 0.00 0.00 3.06
3358 3400 9.880157 TTAGCTTCTTAATAAATCGTTACCACT 57.120 29.630 0.00 0.00 0.00 4.00
3373 3415 9.357161 TCCAGGTTTTGTTATTTAGCTTCTTAA 57.643 29.630 0.00 0.00 0.00 1.85
3386 3428 7.057894 ACAGACTATTGTTCCAGGTTTTGTTA 58.942 34.615 0.00 0.00 0.00 2.41
3399 3441 6.620877 TCCCAAGTATGACAGACTATTGTT 57.379 37.500 2.57 0.00 0.00 2.83
3401 3443 6.481313 CACATCCCAAGTATGACAGACTATTG 59.519 42.308 2.57 0.00 0.00 1.90
3404 3446 4.405680 CCACATCCCAAGTATGACAGACTA 59.594 45.833 2.57 0.00 0.00 2.59
3408 3450 3.634397 ACCACATCCCAAGTATGACAG 57.366 47.619 0.00 0.00 0.00 3.51
3417 3459 3.704800 TGAATCGTTACCACATCCCAA 57.295 42.857 0.00 0.00 0.00 4.12
3424 3466 8.742554 AATTCTCAAATTTGAATCGTTACCAC 57.257 30.769 20.82 0.00 36.64 4.16
3425 3467 9.757227 AAAATTCTCAAATTTGAATCGTTACCA 57.243 25.926 20.82 0.00 42.82 3.25
3429 3471 9.323985 TCCAAAAATTCTCAAATTTGAATCGTT 57.676 25.926 20.82 10.67 42.82 3.85
3430 3472 8.764287 GTCCAAAAATTCTCAAATTTGAATCGT 58.236 29.630 20.82 5.48 42.82 3.73
3431 3473 8.981647 AGTCCAAAAATTCTCAAATTTGAATCG 58.018 29.630 20.82 10.43 42.82 3.34
3585 3636 2.691526 TGATGCATGATCTTGGCCTTTC 59.308 45.455 2.46 0.00 31.55 2.62
3719 3770 3.703001 TTTTCTCGCCCTCTCAAGAAT 57.297 42.857 0.00 0.00 0.00 2.40
3841 3903 2.244117 CTCAGTGACCCATCCACCGG 62.244 65.000 0.00 0.00 35.23 5.28
3917 3979 2.994995 TCTGTGGTCGCCGTGGAT 60.995 61.111 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.