Multiple sequence alignment - TraesCS3D01G213200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G213200 chr3D 100.000 3375 0 0 1 3375 287287086 287290460 0.000000e+00 6233
1 TraesCS3D01G213200 chr3D 100.000 3224 0 0 3551 6774 287290636 287293859 0.000000e+00 5954
2 TraesCS3D01G213200 chr3B 94.821 2452 70 16 935 3375 380503284 380505689 0.000000e+00 3771
3 TraesCS3D01G213200 chr3B 93.805 1130 39 9 3640 4748 380506007 380507126 0.000000e+00 1670
4 TraesCS3D01G213200 chr3B 92.352 876 32 14 5136 5977 380507117 380507991 0.000000e+00 1214
5 TraesCS3D01G213200 chr3B 84.727 622 31 20 6165 6774 380508105 380508674 1.280000e-156 564
6 TraesCS3D01G213200 chr3B 91.899 395 29 3 1 393 380494090 380494483 3.570000e-152 549
7 TraesCS3D01G213200 chr3B 83.453 417 44 10 4744 5135 765087626 765087210 1.390000e-96 364
8 TraesCS3D01G213200 chr3B 82.809 413 41 9 4748 5135 7079411 7079818 6.510000e-90 342
9 TraesCS3D01G213200 chr3B 87.864 206 19 3 425 627 380502658 380502860 3.160000e-58 237
10 TraesCS3D01G213200 chr3B 94.667 150 3 3 715 860 380502883 380503031 1.900000e-55 228
11 TraesCS3D01G213200 chr3A 94.565 1527 41 15 718 2219 376776968 376778477 0.000000e+00 2322
12 TraesCS3D01G213200 chr3A 93.306 1225 39 15 3552 4748 376780042 376781251 0.000000e+00 1768
13 TraesCS3D01G213200 chr3A 95.700 1093 20 8 2252 3343 376778685 376779751 0.000000e+00 1733
14 TraesCS3D01G213200 chr3A 91.667 876 33 15 5136 6001 376781242 376782087 0.000000e+00 1177
15 TraesCS3D01G213200 chr3A 87.883 652 46 17 1 627 376776278 376776921 0.000000e+00 736
16 TraesCS3D01G213200 chr3A 83.897 621 25 36 6017 6589 376782206 376782799 2.160000e-144 523
17 TraesCS3D01G213200 chr3A 84.977 426 41 11 4739 5143 63910700 63910277 1.760000e-110 411
18 TraesCS3D01G213200 chr3A 93.296 179 12 0 6596 6774 376782836 376783014 1.450000e-66 265
19 TraesCS3D01G213200 chr5D 86.765 408 32 10 4748 5134 47520672 47520266 1.040000e-117 435
20 TraesCS3D01G213200 chr5D 83.535 413 40 14 4747 5135 293375483 293375075 1.800000e-95 361
21 TraesCS3D01G213200 chr5D 79.496 278 35 12 6 278 433635863 433635603 1.940000e-40 178
22 TraesCS3D01G213200 chr5A 85.819 409 36 6 4748 5136 46498650 46498244 1.360000e-111 414
23 TraesCS3D01G213200 chr6D 85.337 416 36 12 4748 5138 436731065 436731480 2.270000e-109 407
24 TraesCS3D01G213200 chr6A 85.294 408 40 10 4748 5135 142076967 142077374 2.940000e-108 403
25 TraesCS3D01G213200 chr1B 84.390 410 42 5 4748 5135 69353625 69353216 3.830000e-102 383
26 TraesCS3D01G213200 chr1B 84.223 412 39 11 4748 5137 352877728 352878135 1.780000e-100 377
27 TraesCS3D01G213200 chr4A 84.058 414 43 12 4745 5139 67167235 67166826 1.780000e-100 377
28 TraesCS3D01G213200 chr2D 83.824 408 42 14 4749 5135 535300224 535300628 3.860000e-97 366
29 TraesCS3D01G213200 chr2A 83.824 408 43 8 4748 5135 214425505 214425909 3.860000e-97 366
30 TraesCS3D01G213200 chr2A 83.495 412 45 9 4748 5136 51660558 51660147 4.990000e-96 363
31 TraesCS3D01G213200 chr2A 83.698 411 40 15 4748 5135 744373819 744374225 4.990000e-96 363
32 TraesCS3D01G213200 chr1A 83.215 423 44 13 4744 5144 500075558 500075975 4.990000e-96 363
33 TraesCS3D01G213200 chr1A 91.160 181 16 0 4955 5135 471708154 471708334 5.250000e-61 246
34 TraesCS3D01G213200 chr1D 85.522 297 20 3 4862 5135 293808967 293809263 8.600000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G213200 chr3D 287287086 287293859 6773 False 6093.500000 6233 100.000000 1 6774 2 chr3D.!!$F1 6773
1 TraesCS3D01G213200 chr3B 380502658 380508674 6016 False 1280.666667 3771 91.372667 425 6774 6 chr3B.!!$F3 6349
2 TraesCS3D01G213200 chr3A 376776278 376783014 6736 False 1217.714286 2322 91.473429 1 6774 7 chr3A.!!$F1 6773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 724 0.103208 GCCCCGACTGTATGTCAGAG 59.897 60.0 6.72 1.69 46.27 3.35 F
1013 1268 0.462759 GATCTGCAACTAGCCGGCTT 60.463 55.0 37.74 16.15 44.83 4.35 F
1672 1941 0.392706 TCAGCCATCTGTGACGTGTT 59.607 50.0 0.00 0.00 41.10 3.32 F
1673 1942 0.514255 CAGCCATCTGTGACGTGTTG 59.486 55.0 0.00 0.00 35.61 3.33 F
1834 2103 0.535102 AACCTTCTCCCTTGCACACG 60.535 55.0 0.00 0.00 0.00 4.49 F
3357 3806 0.323629 CCTCTCCCGTGTGGCTTAAA 59.676 55.0 0.00 0.00 0.00 1.52 F
4765 5326 0.251354 TGAGAGAGGGATTGCAGCAC 59.749 55.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1870 0.034186 ATGAAAGGGATCTTGCGGCA 60.034 50.000 0.00 0.0 30.94 5.69 R
2236 2505 1.820519 GCAATGCTGTTGATTGGAGGA 59.179 47.619 0.00 0.0 32.38 3.71 R
2979 3427 2.775890 ACATCTTCACAGACAGCCAAG 58.224 47.619 0.00 0.0 0.00 3.61 R
3196 3644 3.953612 TCAATGGCCCTATCACAAACATC 59.046 43.478 0.00 0.0 0.00 3.06 R
3711 4249 0.107993 AGGCACACAGGTCGATGATG 60.108 55.000 0.00 0.0 0.00 3.07 R
5008 5569 0.035439 ACACACAATCCTAAGGCCCG 60.035 55.000 0.00 0.0 0.00 6.13 R
6360 7097 0.100682 GCTTGAGTATGAGACGGCGA 59.899 55.000 16.62 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.147473 CGCCCCTTGTTGCAAAAATC 58.853 50.000 1.65 0.00 0.00 2.17
41 42 1.270041 GCCCCTTGTTGCAAAAATCGA 60.270 47.619 1.65 0.00 0.00 3.59
58 59 4.094646 ATGCGGACATGTCGGGCA 62.095 61.111 32.10 32.10 41.53 5.36
75 76 1.797933 CAAGAGGCAGACGACGACG 60.798 63.158 5.58 5.58 45.75 5.12
157 161 4.926832 CGAAAGAAGGAGAAGGAAGAAGAC 59.073 45.833 0.00 0.00 0.00 3.01
166 170 5.163395 GGAGAAGGAAGAAGACGTTATGGAT 60.163 44.000 0.00 0.00 0.00 3.41
167 171 5.665459 AGAAGGAAGAAGACGTTATGGATG 58.335 41.667 0.00 0.00 0.00 3.51
170 174 6.049955 AGGAAGAAGACGTTATGGATGAAA 57.950 37.500 0.00 0.00 0.00 2.69
171 175 5.875359 AGGAAGAAGACGTTATGGATGAAAC 59.125 40.000 0.00 0.00 0.00 2.78
211 215 4.772100 ACAAATAGGAAGGTTTGGATGTGG 59.228 41.667 0.00 0.00 39.12 4.17
216 220 3.068064 GGTTTGGATGTGGCCCCG 61.068 66.667 0.00 0.00 0.00 5.73
264 268 2.171209 CTGTGGCCAGTCGACCATCA 62.171 60.000 5.11 3.13 38.46 3.07
281 285 4.080582 ACCATCAGGAATCGTTTACCATCA 60.081 41.667 0.00 0.00 38.69 3.07
295 299 2.200081 ACCATCAAGATGTGCCCTACT 58.800 47.619 9.04 0.00 37.11 2.57
305 309 0.690762 GTGCCCTACTCAGACCCAAA 59.309 55.000 0.00 0.00 0.00 3.28
306 310 1.282157 GTGCCCTACTCAGACCCAAAT 59.718 52.381 0.00 0.00 0.00 2.32
308 312 1.134068 GCCCTACTCAGACCCAAATCC 60.134 57.143 0.00 0.00 0.00 3.01
309 313 1.139058 CCCTACTCAGACCCAAATCCG 59.861 57.143 0.00 0.00 0.00 4.18
311 315 2.500098 CCTACTCAGACCCAAATCCGAA 59.500 50.000 0.00 0.00 0.00 4.30
312 316 3.134804 CCTACTCAGACCCAAATCCGAAT 59.865 47.826 0.00 0.00 0.00 3.34
314 318 2.205074 CTCAGACCCAAATCCGAATCG 58.795 52.381 0.00 0.00 0.00 3.34
332 336 7.069569 CCGAATCGGTAGTGCATAAAAATAAG 58.930 38.462 14.46 0.00 42.73 1.73
354 358 6.870971 AGCGGTTTACTAAATTTTGTCTCA 57.129 33.333 8.57 0.00 0.00 3.27
355 359 7.448748 AGCGGTTTACTAAATTTTGTCTCAT 57.551 32.000 8.57 0.00 0.00 2.90
356 360 7.305474 AGCGGTTTACTAAATTTTGTCTCATG 58.695 34.615 8.57 0.00 0.00 3.07
357 361 7.040686 AGCGGTTTACTAAATTTTGTCTCATGT 60.041 33.333 8.57 0.00 0.00 3.21
358 362 7.060633 GCGGTTTACTAAATTTTGTCTCATGTG 59.939 37.037 8.57 0.00 0.00 3.21
359 363 8.073768 CGGTTTACTAAATTTTGTCTCATGTGT 58.926 33.333 8.57 0.00 0.00 3.72
435 452 2.238646 TCCTACATGGCCACTGGTAAAG 59.761 50.000 8.16 6.05 35.26 1.85
448 465 5.763204 CCACTGGTAAAGAGTTTGCTTCTAA 59.237 40.000 0.00 0.00 0.00 2.10
523 549 9.088987 AGTGAAATTCATAACCATACCAAAACT 57.911 29.630 0.00 0.00 0.00 2.66
541 567 9.401058 ACCAAAACTTCCTCTATATTTGATGAG 57.599 33.333 0.00 0.00 31.23 2.90
557 583 4.610333 TGATGAGGGTCGCTATATATGGT 58.390 43.478 0.00 0.00 0.00 3.55
599 625 8.157476 ACCCAGCTTGTATACCTCTAAATATTG 58.843 37.037 0.00 0.00 0.00 1.90
631 657 9.098355 TGTTTTGAGAGATCTAAATATTGGACG 57.902 33.333 0.00 0.00 0.00 4.79
632 658 9.314321 GTTTTGAGAGATCTAAATATTGGACGA 57.686 33.333 0.00 0.00 0.00 4.20
633 659 9.534565 TTTTGAGAGATCTAAATATTGGACGAG 57.465 33.333 0.00 0.00 0.00 4.18
634 660 7.220741 TGAGAGATCTAAATATTGGACGAGG 57.779 40.000 0.00 0.00 0.00 4.63
635 661 7.004691 TGAGAGATCTAAATATTGGACGAGGA 58.995 38.462 0.00 0.00 0.00 3.71
636 662 7.671819 TGAGAGATCTAAATATTGGACGAGGAT 59.328 37.037 0.00 0.00 0.00 3.24
637 663 8.062065 AGAGATCTAAATATTGGACGAGGATC 57.938 38.462 0.00 0.00 0.00 3.36
638 664 7.123547 AGAGATCTAAATATTGGACGAGGATCC 59.876 40.741 2.48 2.48 39.45 3.36
639 665 6.957020 AGATCTAAATATTGGACGAGGATCCT 59.043 38.462 16.13 16.13 39.75 3.24
640 666 6.346477 TCTAAATATTGGACGAGGATCCTG 57.654 41.667 22.02 14.05 39.75 3.86
641 667 5.839063 TCTAAATATTGGACGAGGATCCTGT 59.161 40.000 22.02 17.35 39.75 4.00
642 668 4.342862 AATATTGGACGAGGATCCTGTG 57.657 45.455 22.02 14.15 39.75 3.66
643 669 0.179000 ATTGGACGAGGATCCTGTGC 59.821 55.000 22.02 21.36 39.75 4.57
644 670 1.899437 TTGGACGAGGATCCTGTGCC 61.899 60.000 22.02 16.91 39.75 5.01
645 671 2.105128 GACGAGGATCCTGTGCCG 59.895 66.667 22.02 18.79 0.00 5.69
646 672 2.680352 ACGAGGATCCTGTGCCGT 60.680 61.111 22.02 19.51 0.00 5.68
647 673 2.202797 CGAGGATCCTGTGCCGTG 60.203 66.667 22.02 0.00 0.00 4.94
648 674 2.982130 GAGGATCCTGTGCCGTGT 59.018 61.111 22.02 0.00 0.00 4.49
649 675 1.448540 GAGGATCCTGTGCCGTGTG 60.449 63.158 22.02 0.00 0.00 3.82
650 676 2.436646 GGATCCTGTGCCGTGTGG 60.437 66.667 3.84 0.00 38.77 4.17
667 693 4.980805 GCAGGGTGCCGTTCGTCA 62.981 66.667 0.00 0.00 37.42 4.35
668 694 3.041940 CAGGGTGCCGTTCGTCAC 61.042 66.667 0.00 0.00 0.00 3.67
669 695 3.231736 AGGGTGCCGTTCGTCACT 61.232 61.111 6.36 0.00 33.91 3.41
670 696 3.041940 GGGTGCCGTTCGTCACTG 61.042 66.667 6.36 0.00 33.91 3.66
671 697 2.028484 GGTGCCGTTCGTCACTGA 59.972 61.111 6.36 0.00 33.91 3.41
672 698 2.308039 GGTGCCGTTCGTCACTGAC 61.308 63.158 6.36 0.00 33.91 3.51
673 699 1.299926 GTGCCGTTCGTCACTGACT 60.300 57.895 7.58 0.00 0.00 3.41
674 700 1.007734 TGCCGTTCGTCACTGACTC 60.008 57.895 7.58 0.00 0.00 3.36
675 701 2.081212 GCCGTTCGTCACTGACTCG 61.081 63.158 7.58 8.83 0.00 4.18
676 702 1.281960 CCGTTCGTCACTGACTCGT 59.718 57.895 7.58 0.00 0.00 4.18
677 703 0.997226 CCGTTCGTCACTGACTCGTG 60.997 60.000 7.58 0.00 36.25 4.35
678 704 0.997226 CGTTCGTCACTGACTCGTGG 60.997 60.000 7.58 0.00 35.63 4.94
679 705 0.663568 GTTCGTCACTGACTCGTGGG 60.664 60.000 7.58 0.00 35.63 4.61
680 706 2.416244 TTCGTCACTGACTCGTGGGC 62.416 60.000 7.58 0.00 35.63 5.36
681 707 2.048127 GTCACTGACTCGTGGGCC 60.048 66.667 0.00 0.00 35.63 5.80
682 708 3.311110 TCACTGACTCGTGGGCCC 61.311 66.667 17.59 17.59 35.63 5.80
683 709 4.394712 CACTGACTCGTGGGCCCC 62.395 72.222 22.27 10.05 0.00 5.80
690 716 4.682334 TCGTGGGCCCCGACTGTA 62.682 66.667 25.77 8.65 0.00 2.74
691 717 3.467226 CGTGGGCCCCGACTGTAT 61.467 66.667 22.27 0.00 0.00 2.29
692 718 2.189521 GTGGGCCCCGACTGTATG 59.810 66.667 22.27 0.00 0.00 2.39
693 719 2.285069 TGGGCCCCGACTGTATGT 60.285 61.111 22.27 0.00 0.00 2.29
694 720 2.363975 TGGGCCCCGACTGTATGTC 61.364 63.158 22.27 0.00 42.06 3.06
695 721 2.363975 GGGCCCCGACTGTATGTCA 61.364 63.158 12.23 0.00 45.60 3.58
696 722 1.144057 GGCCCCGACTGTATGTCAG 59.856 63.158 0.00 0.00 45.60 3.51
697 723 1.327690 GGCCCCGACTGTATGTCAGA 61.328 60.000 0.00 0.00 46.27 3.27
698 724 0.103208 GCCCCGACTGTATGTCAGAG 59.897 60.000 6.72 1.69 46.27 3.35
699 725 0.747255 CCCCGACTGTATGTCAGAGG 59.253 60.000 6.72 8.51 46.27 3.69
700 726 1.685180 CCCCGACTGTATGTCAGAGGA 60.685 57.143 14.57 0.00 46.27 3.71
701 727 1.678627 CCCGACTGTATGTCAGAGGAG 59.321 57.143 14.57 0.00 46.27 3.69
702 728 1.066303 CCGACTGTATGTCAGAGGAGC 59.934 57.143 6.72 0.00 46.27 4.70
703 729 2.020720 CGACTGTATGTCAGAGGAGCT 58.979 52.381 6.72 0.00 46.27 4.09
704 730 2.032799 CGACTGTATGTCAGAGGAGCTC 59.967 54.545 4.71 4.71 46.27 4.09
705 731 2.360801 GACTGTATGTCAGAGGAGCTCC 59.639 54.545 26.22 26.22 46.27 4.70
706 732 1.686052 CTGTATGTCAGAGGAGCTCCC 59.314 57.143 29.54 19.90 46.27 4.30
707 733 6.999084 GACTGTATGTCAGAGGAGCTCCCT 62.999 54.167 29.54 21.81 45.99 4.20
785 859 4.326504 AGTGTTGGCAATCCTGAAAAAG 57.673 40.909 1.92 0.00 0.00 2.27
789 863 5.584251 GTGTTGGCAATCCTGAAAAAGAAAA 59.416 36.000 1.92 0.00 0.00 2.29
885 962 2.123597 ACGTGCCTAGCCCGGATA 60.124 61.111 0.73 0.00 0.00 2.59
960 1215 9.125026 TCTTTTCTGGCTGATAGATAAAAATCC 57.875 33.333 0.00 0.00 0.00 3.01
1013 1268 0.462759 GATCTGCAACTAGCCGGCTT 60.463 55.000 37.74 16.15 44.83 4.35
1026 1281 3.930012 GGCTTCCCTCCCGATCCG 61.930 72.222 0.00 0.00 0.00 4.18
1275 1530 1.305930 GCCGCGTGGATCTTTTCCTT 61.306 55.000 21.76 0.00 45.68 3.36
1276 1531 0.727398 CCGCGTGGATCTTTTCCTTC 59.273 55.000 10.20 0.00 45.68 3.46
1342 1604 2.600790 GATCCCATCCATGCCAATTGA 58.399 47.619 7.12 0.00 0.00 2.57
1379 1644 8.040727 GGCCAATTGGAGATTTATTTTGTTAGT 58.959 33.333 29.02 0.00 37.39 2.24
1497 1763 0.877071 AGCAGGTTTGATGAGCAACG 59.123 50.000 0.00 0.00 35.91 4.10
1590 1856 1.676916 GCAACTCTGTAGCATCAGCCA 60.677 52.381 3.73 0.00 43.56 4.75
1591 1857 2.915349 CAACTCTGTAGCATCAGCCAT 58.085 47.619 3.73 0.00 43.56 4.40
1592 1858 2.871022 CAACTCTGTAGCATCAGCCATC 59.129 50.000 3.73 0.00 43.56 3.51
1593 1859 2.113807 ACTCTGTAGCATCAGCCATCA 58.886 47.619 3.73 0.00 43.56 3.07
1594 1860 2.502947 ACTCTGTAGCATCAGCCATCAA 59.497 45.455 3.73 0.00 43.56 2.57
1595 1861 3.132160 CTCTGTAGCATCAGCCATCAAG 58.868 50.000 3.73 0.00 43.56 3.02
1596 1862 2.767960 TCTGTAGCATCAGCCATCAAGA 59.232 45.455 3.73 0.00 43.56 3.02
1597 1863 3.390311 TCTGTAGCATCAGCCATCAAGAT 59.610 43.478 3.73 0.00 43.56 2.40
1598 1864 3.473625 TGTAGCATCAGCCATCAAGATG 58.526 45.455 3.07 3.07 43.56 2.90
1599 1865 3.135167 TGTAGCATCAGCCATCAAGATGA 59.865 43.478 11.48 0.00 41.18 2.92
1600 1866 3.292492 AGCATCAGCCATCAAGATGAA 57.708 42.857 11.48 0.00 41.18 2.57
1601 1867 3.833732 AGCATCAGCCATCAAGATGAAT 58.166 40.909 11.48 0.00 41.18 2.57
1603 1869 4.649674 AGCATCAGCCATCAAGATGAATTT 59.350 37.500 11.48 0.00 41.18 1.82
1604 1870 5.128827 AGCATCAGCCATCAAGATGAATTTT 59.871 36.000 11.48 0.00 41.18 1.82
1605 1871 5.234329 GCATCAGCCATCAAGATGAATTTTG 59.766 40.000 11.48 5.16 41.18 2.44
1606 1872 4.751060 TCAGCCATCAAGATGAATTTTGC 58.249 39.130 11.48 5.33 41.20 3.68
1607 1873 3.869246 CAGCCATCAAGATGAATTTTGCC 59.131 43.478 11.48 0.00 41.20 4.52
1608 1874 2.861935 GCCATCAAGATGAATTTTGCCG 59.138 45.455 11.48 0.00 41.20 5.69
1609 1875 2.861935 CCATCAAGATGAATTTTGCCGC 59.138 45.455 11.48 0.00 41.20 6.53
1610 1876 3.513662 CATCAAGATGAATTTTGCCGCA 58.486 40.909 4.01 0.00 41.20 5.69
1611 1877 3.657015 TCAAGATGAATTTTGCCGCAA 57.343 38.095 0.38 0.38 0.00 4.85
1642 1911 1.123077 TCCTCATTCATCCACTCCCG 58.877 55.000 0.00 0.00 0.00 5.14
1669 1938 1.512926 GTTTCAGCCATCTGTGACGT 58.487 50.000 0.00 0.00 41.10 4.34
1672 1941 0.392706 TCAGCCATCTGTGACGTGTT 59.607 50.000 0.00 0.00 41.10 3.32
1673 1942 0.514255 CAGCCATCTGTGACGTGTTG 59.486 55.000 0.00 0.00 35.61 3.33
1678 1947 0.588252 ATCTGTGACGTGTTGCAAGC 59.412 50.000 0.00 0.00 0.00 4.01
1694 1963 2.879826 CAAGCCGAATTCACCCAATTC 58.120 47.619 6.22 0.00 45.01 2.17
1742 2011 8.246871 TGCTCTTGTGCTATGATATACAGTATC 58.753 37.037 0.00 0.00 0.00 2.24
1834 2103 0.535102 AACCTTCTCCCTTGCACACG 60.535 55.000 0.00 0.00 0.00 4.49
1861 2130 2.533266 TTGTGGAGAAGTGCACTCTC 57.467 50.000 21.95 24.40 45.01 3.20
2017 2286 2.308570 ACATATCAAACCAGTGCAGGGA 59.691 45.455 11.19 0.00 0.00 4.20
2034 2303 1.278127 GGGAGGACTTCGGTTTGATCA 59.722 52.381 0.00 0.00 0.00 2.92
2085 2354 6.578023 TGGACACATGATCGATAATGTTGTA 58.422 36.000 23.49 9.52 34.81 2.41
2174 2443 4.485163 GGCATGTTTGACAGGTATTGTTC 58.515 43.478 0.00 0.00 41.05 3.18
2188 2457 5.073144 AGGTATTGTTCTGGTTCCTTTCTCA 59.927 40.000 0.00 0.00 0.00 3.27
2556 3000 8.322828 TGTACTAAAATATGGTGGCTTCTACAA 58.677 33.333 0.00 0.00 0.00 2.41
2676 3121 6.071952 TGTGTAATCTCCTTTCATTTGAAGCC 60.072 38.462 0.00 0.00 35.21 4.35
2756 3202 4.356405 TGTGTGACAGATCTCCATGTTT 57.644 40.909 0.00 0.00 0.00 2.83
2880 3326 5.243207 ACTTTGGTCTATTGTAGGTTTCCG 58.757 41.667 0.00 0.00 0.00 4.30
2979 3427 3.621715 GGTTTCCGTATGGTCATGAAGAC 59.378 47.826 0.00 0.00 46.83 3.01
3283 3731 0.895530 TAGGCTGAACACTTCCTCCG 59.104 55.000 0.00 0.00 0.00 4.63
3357 3806 0.323629 CCTCTCCCGTGTGGCTTAAA 59.676 55.000 0.00 0.00 0.00 1.52
3358 3807 1.271163 CCTCTCCCGTGTGGCTTAAAA 60.271 52.381 0.00 0.00 0.00 1.52
3359 3808 2.500229 CTCTCCCGTGTGGCTTAAAAA 58.500 47.619 0.00 0.00 0.00 1.94
3573 4108 6.083925 CGACAGTAGCAACAGTCTATTTTC 57.916 41.667 0.00 0.00 39.34 2.29
3679 4216 1.048601 TTCGTGTTCCTGAGCTTCCT 58.951 50.000 0.00 0.00 0.00 3.36
3702 4239 1.651235 AGGGCCAATTTATCCTGGGTT 59.349 47.619 6.18 0.00 32.95 4.11
3712 4250 4.243550 CCTGGGTTAGGGGACACA 57.756 61.111 0.00 0.00 43.33 3.72
3713 4251 2.709992 CCTGGGTTAGGGGACACAT 58.290 57.895 0.00 0.00 43.33 3.21
3750 4288 4.444022 GCCTGGCTTATCTGAGAAGAATGA 60.444 45.833 15.71 0.00 0.00 2.57
3816 4360 1.968493 AGTCAAACTCGGCTTACTGGA 59.032 47.619 0.00 0.00 0.00 3.86
3891 4435 2.159099 TGGTCTCATTCTGTCATACGGC 60.159 50.000 0.00 0.00 0.00 5.68
4040 4591 7.148474 GCTAGCATTTTAGCTAACAGTAACACA 60.148 37.037 10.63 0.00 45.69 3.72
4041 4592 6.899114 AGCATTTTAGCTAACAGTAACACAC 58.101 36.000 5.45 0.00 44.50 3.82
4102 4653 4.464597 GGTCTCTCTTGTTAGGATGACTGT 59.535 45.833 0.00 0.00 0.00 3.55
4140 4691 9.149225 GATTTATGCTCTCTAGGATGTATTGTG 57.851 37.037 0.00 0.00 35.16 3.33
4222 4773 9.906660 TTTGTTGTTGTGGAGATGATAATAAAC 57.093 29.630 0.00 0.00 0.00 2.01
4240 4791 9.732130 ATAATAAACAGAGCATAGGGAAATCTC 57.268 33.333 0.00 0.00 0.00 2.75
4278 4829 8.223330 AGTATTTCAAGAGGGATTGCATCTAAT 58.777 33.333 0.00 0.00 0.00 1.73
4686 5246 8.669243 ACACTCAATAAAGATTAGCAGTAAAGC 58.331 33.333 0.00 0.00 0.00 3.51
4689 5249 8.792830 TCAATAAAGATTAGCAGTAAAGCAGT 57.207 30.769 0.00 0.00 36.85 4.40
4690 5250 9.884636 TCAATAAAGATTAGCAGTAAAGCAGTA 57.115 29.630 0.00 0.00 36.85 2.74
4694 5254 7.979444 AAGATTAGCAGTAAAGCAGTAAACA 57.021 32.000 0.00 0.00 36.85 2.83
4695 5255 7.365840 AGATTAGCAGTAAAGCAGTAAACAC 57.634 36.000 0.00 0.00 36.85 3.32
4696 5256 5.934935 TTAGCAGTAAAGCAGTAAACACC 57.065 39.130 0.00 0.00 36.85 4.16
4748 5309 2.118233 TAACACGCCCAGCCACATGA 62.118 55.000 0.00 0.00 0.00 3.07
4749 5310 3.129502 CACGCCCAGCCACATGAG 61.130 66.667 0.00 0.00 0.00 2.90
4750 5311 3.321648 ACGCCCAGCCACATGAGA 61.322 61.111 0.00 0.00 0.00 3.27
4751 5312 2.513204 CGCCCAGCCACATGAGAG 60.513 66.667 0.00 0.00 0.00 3.20
4752 5313 2.993008 GCCCAGCCACATGAGAGA 59.007 61.111 0.00 0.00 0.00 3.10
4753 5314 1.153208 GCCCAGCCACATGAGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
4754 5315 1.525923 CCCAGCCACATGAGAGAGG 59.474 63.158 0.00 0.00 0.00 3.69
4755 5316 1.525923 CCAGCCACATGAGAGAGGG 59.474 63.158 0.00 0.00 0.00 4.30
4756 5317 0.979709 CCAGCCACATGAGAGAGGGA 60.980 60.000 0.00 0.00 0.00 4.20
4757 5318 1.129917 CAGCCACATGAGAGAGGGAT 58.870 55.000 0.00 0.00 0.00 3.85
4758 5319 1.489649 CAGCCACATGAGAGAGGGATT 59.510 52.381 0.00 0.00 0.00 3.01
4759 5320 1.489649 AGCCACATGAGAGAGGGATTG 59.510 52.381 0.00 0.00 0.00 2.67
4760 5321 1.964552 CCACATGAGAGAGGGATTGC 58.035 55.000 0.00 0.00 0.00 3.56
4761 5322 1.211212 CCACATGAGAGAGGGATTGCA 59.789 52.381 0.00 0.00 0.00 4.08
4762 5323 2.562635 CACATGAGAGAGGGATTGCAG 58.437 52.381 0.00 0.00 0.00 4.41
4763 5324 1.134159 ACATGAGAGAGGGATTGCAGC 60.134 52.381 0.00 0.00 0.00 5.25
4764 5325 1.134189 CATGAGAGAGGGATTGCAGCA 60.134 52.381 0.00 0.00 0.00 4.41
4765 5326 0.251354 TGAGAGAGGGATTGCAGCAC 59.749 55.000 0.00 0.00 0.00 4.40
4766 5327 0.463474 GAGAGAGGGATTGCAGCACC 60.463 60.000 0.00 0.00 0.00 5.01
4767 5328 1.452833 GAGAGGGATTGCAGCACCC 60.453 63.158 12.47 12.47 43.55 4.61
4770 5331 2.825836 GGGATTGCAGCACCCGAG 60.826 66.667 5.33 0.00 34.03 4.63
4771 5332 3.512516 GGATTGCAGCACCCGAGC 61.513 66.667 0.00 0.00 0.00 5.03
4773 5334 2.437359 ATTGCAGCACCCGAGCTC 60.437 61.111 2.73 2.73 44.54 4.09
4774 5335 3.984193 ATTGCAGCACCCGAGCTCC 62.984 63.158 8.47 0.00 44.54 4.70
4777 5338 3.699894 CAGCACCCGAGCTCCACT 61.700 66.667 8.47 0.00 44.54 4.00
4778 5339 3.699894 AGCACCCGAGCTCCACTG 61.700 66.667 8.47 1.41 42.18 3.66
4790 5351 4.387026 AGCTCCACTGCTCTCTATATCT 57.613 45.455 0.00 0.00 39.34 1.98
4791 5352 5.512942 AGCTCCACTGCTCTCTATATCTA 57.487 43.478 0.00 0.00 39.34 1.98
4792 5353 5.886609 AGCTCCACTGCTCTCTATATCTAA 58.113 41.667 0.00 0.00 39.34 2.10
4793 5354 6.310941 AGCTCCACTGCTCTCTATATCTAAA 58.689 40.000 0.00 0.00 39.34 1.85
4794 5355 6.208599 AGCTCCACTGCTCTCTATATCTAAAC 59.791 42.308 0.00 0.00 39.34 2.01
4795 5356 6.015856 GCTCCACTGCTCTCTATATCTAAACA 60.016 42.308 0.00 0.00 0.00 2.83
4796 5357 7.309744 GCTCCACTGCTCTCTATATCTAAACAT 60.310 40.741 0.00 0.00 0.00 2.71
4797 5358 8.484214 TCCACTGCTCTCTATATCTAAACATT 57.516 34.615 0.00 0.00 0.00 2.71
4798 5359 8.928448 TCCACTGCTCTCTATATCTAAACATTT 58.072 33.333 0.00 0.00 0.00 2.32
4799 5360 9.553064 CCACTGCTCTCTATATCTAAACATTTT 57.447 33.333 0.00 0.00 0.00 1.82
4853 5414 5.852282 ATGAAATTTTTCCCAGGGATACG 57.148 39.130 9.80 0.00 36.36 3.06
4854 5415 4.668636 TGAAATTTTTCCCAGGGATACGT 58.331 39.130 9.80 0.00 36.36 3.57
4855 5416 5.817784 TGAAATTTTTCCCAGGGATACGTA 58.182 37.500 9.80 0.00 36.36 3.57
4856 5417 6.428295 TGAAATTTTTCCCAGGGATACGTAT 58.572 36.000 9.80 8.05 36.36 3.06
4857 5418 7.575505 TGAAATTTTTCCCAGGGATACGTATA 58.424 34.615 9.80 0.00 36.36 1.47
4858 5419 7.499895 TGAAATTTTTCCCAGGGATACGTATAC 59.500 37.037 9.80 9.47 36.36 1.47
4859 5420 5.954153 TTTTTCCCAGGGATACGTATACA 57.046 39.130 19.35 0.00 37.60 2.29
4860 5421 6.503560 TTTTTCCCAGGGATACGTATACAT 57.496 37.500 19.35 9.83 37.60 2.29
4861 5422 7.615039 TTTTTCCCAGGGATACGTATACATA 57.385 36.000 19.35 0.00 37.60 2.29
4862 5423 7.801893 TTTTCCCAGGGATACGTATACATAT 57.198 36.000 19.35 2.03 37.60 1.78
4863 5424 7.801893 TTTCCCAGGGATACGTATACATATT 57.198 36.000 19.35 0.00 37.60 1.28
4864 5425 7.414222 TTCCCAGGGATACGTATACATATTC 57.586 40.000 19.35 1.67 37.60 1.75
4865 5426 5.895534 TCCCAGGGATACGTATACATATTCC 59.104 44.000 19.35 8.05 37.60 3.01
4866 5427 5.897824 CCCAGGGATACGTATACATATTCCT 59.102 44.000 19.35 12.26 37.27 3.36
4867 5428 7.064866 CCCAGGGATACGTATACATATTCCTA 58.935 42.308 16.71 0.00 34.93 2.94
4868 5429 7.562454 CCCAGGGATACGTATACATATTCCTAA 59.438 40.741 16.71 0.00 34.93 2.69
4869 5430 9.144298 CCAGGGATACGTATACATATTCCTAAT 57.856 37.037 16.71 0.00 34.93 1.73
4878 5439 9.464714 CGTATACATATTCCTAATATCTGTGGC 57.535 37.037 3.32 0.00 31.83 5.01
4881 5442 9.896645 ATACATATTCCTAATATCTGTGGCAAG 57.103 33.333 0.00 0.00 31.83 4.01
4882 5443 7.749666 ACATATTCCTAATATCTGTGGCAAGT 58.250 34.615 0.00 0.00 31.83 3.16
4883 5444 8.220559 ACATATTCCTAATATCTGTGGCAAGTT 58.779 33.333 0.00 0.00 31.83 2.66
4884 5445 9.071276 CATATTCCTAATATCTGTGGCAAGTTT 57.929 33.333 0.00 0.00 31.83 2.66
4885 5446 7.573968 ATTCCTAATATCTGTGGCAAGTTTC 57.426 36.000 0.00 0.00 0.00 2.78
4886 5447 5.116180 TCCTAATATCTGTGGCAAGTTTCG 58.884 41.667 0.00 0.00 0.00 3.46
4887 5448 4.273480 CCTAATATCTGTGGCAAGTTTCGG 59.727 45.833 0.00 0.00 0.00 4.30
4888 5449 2.851263 TATCTGTGGCAAGTTTCGGT 57.149 45.000 0.00 0.00 0.00 4.69
4889 5450 2.851263 ATCTGTGGCAAGTTTCGGTA 57.149 45.000 0.00 0.00 0.00 4.02
4890 5451 2.163818 TCTGTGGCAAGTTTCGGTAG 57.836 50.000 0.00 0.00 0.00 3.18
4891 5452 1.689813 TCTGTGGCAAGTTTCGGTAGA 59.310 47.619 0.00 0.00 0.00 2.59
4892 5453 2.103432 TCTGTGGCAAGTTTCGGTAGAA 59.897 45.455 0.00 0.00 33.98 2.10
4893 5454 2.875933 CTGTGGCAAGTTTCGGTAGAAA 59.124 45.455 0.00 0.00 43.44 2.52
4894 5455 3.482436 TGTGGCAAGTTTCGGTAGAAAT 58.518 40.909 0.00 0.00 46.64 2.17
4895 5456 3.500680 TGTGGCAAGTTTCGGTAGAAATC 59.499 43.478 0.00 0.00 46.64 2.17
4896 5457 3.751698 GTGGCAAGTTTCGGTAGAAATCT 59.248 43.478 0.00 0.00 46.64 2.40
4897 5458 4.000988 TGGCAAGTTTCGGTAGAAATCTC 58.999 43.478 0.00 0.00 46.64 2.75
4898 5459 4.000988 GGCAAGTTTCGGTAGAAATCTCA 58.999 43.478 0.00 0.00 46.64 3.27
4899 5460 4.636206 GGCAAGTTTCGGTAGAAATCTCAT 59.364 41.667 0.00 0.00 46.64 2.90
4900 5461 5.123979 GGCAAGTTTCGGTAGAAATCTCATT 59.876 40.000 0.00 0.00 46.64 2.57
4901 5462 6.349363 GGCAAGTTTCGGTAGAAATCTCATTT 60.349 38.462 0.00 0.00 46.64 2.32
4902 5463 7.084486 GCAAGTTTCGGTAGAAATCTCATTTT 58.916 34.615 0.00 0.00 46.64 1.82
4903 5464 7.061094 GCAAGTTTCGGTAGAAATCTCATTTTG 59.939 37.037 0.00 0.00 46.64 2.44
4904 5465 7.745620 AGTTTCGGTAGAAATCTCATTTTGT 57.254 32.000 0.00 0.00 46.64 2.83
4905 5466 8.166422 AGTTTCGGTAGAAATCTCATTTTGTT 57.834 30.769 0.00 0.00 46.64 2.83
4906 5467 8.630037 AGTTTCGGTAGAAATCTCATTTTGTTT 58.370 29.630 0.00 0.00 46.64 2.83
4907 5468 9.244799 GTTTCGGTAGAAATCTCATTTTGTTTT 57.755 29.630 0.00 0.00 46.64 2.43
4908 5469 9.810545 TTTCGGTAGAAATCTCATTTTGTTTTT 57.189 25.926 0.00 0.00 41.06 1.94
4909 5470 8.795786 TCGGTAGAAATCTCATTTTGTTTTTG 57.204 30.769 0.00 0.00 31.47 2.44
4910 5471 7.865385 TCGGTAGAAATCTCATTTTGTTTTTGG 59.135 33.333 0.00 0.00 31.47 3.28
4911 5472 7.359181 CGGTAGAAATCTCATTTTGTTTTTGGC 60.359 37.037 0.00 0.00 31.47 4.52
4912 5473 7.657354 GGTAGAAATCTCATTTTGTTTTTGGCT 59.343 33.333 0.00 0.00 31.47 4.75
4913 5474 9.691362 GTAGAAATCTCATTTTGTTTTTGGCTA 57.309 29.630 0.00 0.00 31.47 3.93
4951 5512 9.844257 ATTTCTGACAGAATATAGGAGAAAAGG 57.156 33.333 18.38 0.00 33.67 3.11
4952 5513 7.366847 TCTGACAGAATATAGGAGAAAAGGG 57.633 40.000 1.64 0.00 0.00 3.95
4953 5514 7.132805 TCTGACAGAATATAGGAGAAAAGGGA 58.867 38.462 1.64 0.00 0.00 4.20
4954 5515 7.791766 TCTGACAGAATATAGGAGAAAAGGGAT 59.208 37.037 1.64 0.00 0.00 3.85
4955 5516 8.337118 TGACAGAATATAGGAGAAAAGGGATT 57.663 34.615 0.00 0.00 0.00 3.01
4956 5517 8.781951 TGACAGAATATAGGAGAAAAGGGATTT 58.218 33.333 0.00 0.00 0.00 2.17
4957 5518 9.278978 GACAGAATATAGGAGAAAAGGGATTTC 57.721 37.037 0.00 0.00 46.45 2.17
4997 5558 9.974980 TCCCATAACACAAAGTATTTCTTTTTC 57.025 29.630 0.00 0.00 42.95 2.29
4998 5559 9.757227 CCCATAACACAAAGTATTTCTTTTTCA 57.243 29.630 0.00 0.00 42.95 2.69
5010 5571 9.908152 AGTATTTCTTTTTCAGATTTTTACCGG 57.092 29.630 0.00 0.00 0.00 5.28
5011 5572 9.135843 GTATTTCTTTTTCAGATTTTTACCGGG 57.864 33.333 6.32 0.00 0.00 5.73
5012 5573 5.128992 TCTTTTTCAGATTTTTACCGGGC 57.871 39.130 6.32 0.00 0.00 6.13
5013 5574 3.945981 TTTTCAGATTTTTACCGGGCC 57.054 42.857 6.32 0.00 0.00 5.80
5014 5575 2.891191 TTCAGATTTTTACCGGGCCT 57.109 45.000 6.32 0.00 0.00 5.19
5015 5576 2.891191 TCAGATTTTTACCGGGCCTT 57.109 45.000 6.32 0.00 0.00 4.35
5016 5577 4.304048 TTCAGATTTTTACCGGGCCTTA 57.696 40.909 6.32 0.00 0.00 2.69
5017 5578 3.881220 TCAGATTTTTACCGGGCCTTAG 58.119 45.455 6.32 0.00 0.00 2.18
5018 5579 2.949644 CAGATTTTTACCGGGCCTTAGG 59.050 50.000 6.32 6.82 0.00 2.69
5019 5580 2.848071 AGATTTTTACCGGGCCTTAGGA 59.152 45.455 17.14 0.00 0.00 2.94
5020 5581 3.462205 AGATTTTTACCGGGCCTTAGGAT 59.538 43.478 17.14 6.24 0.00 3.24
5021 5582 3.743092 TTTTTACCGGGCCTTAGGATT 57.257 42.857 17.14 1.21 0.00 3.01
5022 5583 2.721425 TTTACCGGGCCTTAGGATTG 57.279 50.000 17.14 0.00 0.00 2.67
5023 5584 1.587066 TTACCGGGCCTTAGGATTGT 58.413 50.000 17.14 0.00 0.00 2.71
5024 5585 0.834612 TACCGGGCCTTAGGATTGTG 59.165 55.000 17.14 0.00 0.00 3.33
5025 5586 1.205460 ACCGGGCCTTAGGATTGTGT 61.205 55.000 17.14 0.00 0.00 3.72
5026 5587 0.748005 CCGGGCCTTAGGATTGTGTG 60.748 60.000 0.69 0.00 0.00 3.82
5027 5588 0.035439 CGGGCCTTAGGATTGTGTGT 60.035 55.000 0.69 0.00 0.00 3.72
5028 5589 1.208535 CGGGCCTTAGGATTGTGTGTA 59.791 52.381 0.69 0.00 0.00 2.90
5029 5590 2.158813 CGGGCCTTAGGATTGTGTGTAT 60.159 50.000 0.69 0.00 0.00 2.29
5030 5591 3.214328 GGGCCTTAGGATTGTGTGTATG 58.786 50.000 0.69 0.00 0.00 2.39
5031 5592 3.371595 GGGCCTTAGGATTGTGTGTATGT 60.372 47.826 0.69 0.00 0.00 2.29
5032 5593 4.141574 GGGCCTTAGGATTGTGTGTATGTA 60.142 45.833 0.69 0.00 0.00 2.29
5033 5594 5.456186 GGGCCTTAGGATTGTGTGTATGTAT 60.456 44.000 0.69 0.00 0.00 2.29
5034 5595 6.062095 GGCCTTAGGATTGTGTGTATGTATT 58.938 40.000 0.69 0.00 0.00 1.89
5035 5596 6.204882 GGCCTTAGGATTGTGTGTATGTATTC 59.795 42.308 0.69 0.00 0.00 1.75
5036 5597 6.765989 GCCTTAGGATTGTGTGTATGTATTCA 59.234 38.462 0.69 0.00 0.00 2.57
5037 5598 7.254795 GCCTTAGGATTGTGTGTATGTATTCAC 60.255 40.741 0.69 0.00 35.43 3.18
5038 5599 7.042725 CCTTAGGATTGTGTGTATGTATTCACG 60.043 40.741 0.00 0.00 37.38 4.35
5039 5600 5.730550 AGGATTGTGTGTATGTATTCACGT 58.269 37.500 0.00 0.00 37.38 4.49
5040 5601 6.869695 AGGATTGTGTGTATGTATTCACGTA 58.130 36.000 0.00 0.00 37.38 3.57
5041 5602 7.497595 AGGATTGTGTGTATGTATTCACGTAT 58.502 34.615 0.00 0.00 37.38 3.06
5042 5603 7.985184 AGGATTGTGTGTATGTATTCACGTATT 59.015 33.333 0.00 0.00 37.38 1.89
5043 5604 8.609176 GGATTGTGTGTATGTATTCACGTATTT 58.391 33.333 0.00 0.00 37.38 1.40
5044 5605 9.420966 GATTGTGTGTATGTATTCACGTATTTG 57.579 33.333 0.00 0.00 37.38 2.32
5045 5606 8.535690 TTGTGTGTATGTATTCACGTATTTGA 57.464 30.769 0.00 0.00 37.38 2.69
5046 5607 8.710835 TGTGTGTATGTATTCACGTATTTGAT 57.289 30.769 0.00 0.00 37.38 2.57
5047 5608 9.157104 TGTGTGTATGTATTCACGTATTTGATT 57.843 29.630 0.00 0.00 37.38 2.57
5048 5609 9.982291 GTGTGTATGTATTCACGTATTTGATTT 57.018 29.630 0.00 0.00 37.38 2.17
5089 5650 7.428282 ACGGAAGTGTGTTTTTCAAAATTTT 57.572 28.000 0.00 0.00 46.97 1.82
5090 5651 7.514805 ACGGAAGTGTGTTTTTCAAAATTTTC 58.485 30.769 0.00 0.00 46.97 2.29
5091 5652 7.171678 ACGGAAGTGTGTTTTTCAAAATTTTCA 59.828 29.630 0.00 0.00 46.97 2.69
5092 5653 8.012241 CGGAAGTGTGTTTTTCAAAATTTTCAA 58.988 29.630 0.00 0.00 0.00 2.69
5093 5654 9.670719 GGAAGTGTGTTTTTCAAAATTTTCAAA 57.329 25.926 0.00 0.00 0.00 2.69
5103 5664 7.961325 TTCAAAATTTTCAAATACCAGGAGC 57.039 32.000 0.00 0.00 0.00 4.70
5104 5665 6.463360 TCAAAATTTTCAAATACCAGGAGCC 58.537 36.000 0.00 0.00 0.00 4.70
5105 5666 6.042552 TCAAAATTTTCAAATACCAGGAGCCA 59.957 34.615 0.00 0.00 0.00 4.75
5106 5667 6.625532 AAATTTTCAAATACCAGGAGCCAT 57.374 33.333 0.00 0.00 0.00 4.40
5107 5668 5.603170 ATTTTCAAATACCAGGAGCCATG 57.397 39.130 0.00 0.00 0.00 3.66
5108 5669 2.734755 TCAAATACCAGGAGCCATGG 57.265 50.000 7.63 7.63 43.87 3.66
5109 5670 2.204463 TCAAATACCAGGAGCCATGGA 58.796 47.619 18.40 0.00 40.51 3.41
5110 5671 2.173356 TCAAATACCAGGAGCCATGGAG 59.827 50.000 18.40 0.00 40.51 3.86
5111 5672 2.173356 CAAATACCAGGAGCCATGGAGA 59.827 50.000 18.40 1.52 40.51 3.71
5112 5673 1.428869 ATACCAGGAGCCATGGAGAC 58.571 55.000 18.40 3.66 40.51 3.36
5113 5674 0.691078 TACCAGGAGCCATGGAGACC 60.691 60.000 18.40 14.67 40.51 3.85
5114 5675 1.692042 CCAGGAGCCATGGAGACCT 60.692 63.158 18.40 16.76 40.51 3.85
5115 5676 1.525923 CAGGAGCCATGGAGACCTG 59.474 63.158 26.14 26.14 41.29 4.00
5116 5677 1.692042 AGGAGCCATGGAGACCTGG 60.692 63.158 18.40 0.00 35.53 4.45
5117 5678 1.690633 GGAGCCATGGAGACCTGGA 60.691 63.158 18.40 0.00 34.24 3.86
5118 5679 1.694133 GGAGCCATGGAGACCTGGAG 61.694 65.000 18.40 0.00 34.24 3.86
5119 5680 2.191641 GCCATGGAGACCTGGAGC 59.808 66.667 18.40 0.00 34.24 4.70
5120 5681 2.373707 GCCATGGAGACCTGGAGCT 61.374 63.158 18.40 0.00 34.24 4.09
5121 5682 1.525923 CCATGGAGACCTGGAGCTG 59.474 63.158 5.56 0.00 34.24 4.24
5122 5683 1.153208 CATGGAGACCTGGAGCTGC 60.153 63.158 0.00 0.00 0.00 5.25
5123 5684 1.614525 ATGGAGACCTGGAGCTGCA 60.615 57.895 7.99 7.99 36.89 4.41
5124 5685 1.203441 ATGGAGACCTGGAGCTGCAA 61.203 55.000 9.92 0.00 36.08 4.08
5125 5686 1.078567 GGAGACCTGGAGCTGCAAG 60.079 63.158 9.92 5.71 0.00 4.01
5137 5698 2.792374 CTGCAAGCAGTTTTCGCAG 58.208 52.632 13.72 0.00 43.55 5.18
5138 5699 1.273455 CTGCAAGCAGTTTTCGCAGC 61.273 55.000 13.72 0.00 43.09 5.25
5139 5700 2.018324 GCAAGCAGTTTTCGCAGCC 61.018 57.895 0.00 0.00 0.00 4.85
5140 5701 1.359833 CAAGCAGTTTTCGCAGCCA 59.640 52.632 0.00 0.00 0.00 4.75
5141 5702 0.936297 CAAGCAGTTTTCGCAGCCAC 60.936 55.000 0.00 0.00 0.00 5.01
5142 5703 1.383456 AAGCAGTTTTCGCAGCCACA 61.383 50.000 0.00 0.00 0.00 4.17
5143 5704 1.174712 AGCAGTTTTCGCAGCCACAT 61.175 50.000 0.00 0.00 0.00 3.21
5144 5705 1.005294 GCAGTTTTCGCAGCCACATG 61.005 55.000 0.00 0.00 0.00 3.21
5168 5729 0.462581 ACTGATGCATACCAGCGTGG 60.463 55.000 13.78 2.92 45.02 4.94
5211 5776 1.950973 TATGCGCTAACCAGCCACGA 61.951 55.000 9.73 0.00 45.64 4.35
5404 5994 5.667626 AGAATTTAAGGTGGGAGCTCTGATA 59.332 40.000 14.64 0.00 0.00 2.15
5412 6002 4.262420 GGTGGGAGCTCTGATATTCTCTTC 60.262 50.000 14.64 0.00 0.00 2.87
5413 6003 4.588528 GTGGGAGCTCTGATATTCTCTTCT 59.411 45.833 14.64 0.00 0.00 2.85
5414 6004 5.070313 GTGGGAGCTCTGATATTCTCTTCTT 59.930 44.000 14.64 0.00 0.00 2.52
5433 6026 4.460263 TCTTGTTTGTGCAGTTCCACTAT 58.540 39.130 0.00 0.00 36.68 2.12
5508 6101 1.065926 TGGATCTCTGAATGCGTTGCT 60.066 47.619 0.00 0.00 0.00 3.91
5641 6234 2.553602 TGCACACTTTACAAGCTCATGG 59.446 45.455 0.00 0.00 0.00 3.66
5900 6498 3.951037 TGGAACTTGTGCAGCTTAGAAAA 59.049 39.130 0.00 0.00 0.00 2.29
5920 6518 2.893424 AGACATGGAAATTGTTGGGCT 58.107 42.857 0.00 0.00 0.00 5.19
5921 6519 3.242011 AGACATGGAAATTGTTGGGCTT 58.758 40.909 0.00 0.00 0.00 4.35
5922 6520 3.647590 AGACATGGAAATTGTTGGGCTTT 59.352 39.130 0.00 0.00 0.00 3.51
5926 6527 4.227864 TGGAAATTGTTGGGCTTTGTTT 57.772 36.364 0.00 0.00 0.00 2.83
5954 6555 3.589735 TGTGTATTTTCCCAAGCCTCCTA 59.410 43.478 0.00 0.00 0.00 2.94
6001 6606 7.976135 ATAGATCATGAAAATGCAGGTCTAC 57.024 36.000 0.00 0.00 0.00 2.59
6004 6609 4.183865 TCATGAAAATGCAGGTCTACGAG 58.816 43.478 0.00 0.00 0.00 4.18
6005 6610 3.678056 TGAAAATGCAGGTCTACGAGT 57.322 42.857 0.00 0.00 0.00 4.18
6007 6612 5.339008 TGAAAATGCAGGTCTACGAGTAT 57.661 39.130 0.00 0.00 0.00 2.12
6008 6613 5.109210 TGAAAATGCAGGTCTACGAGTATG 58.891 41.667 0.00 0.00 0.00 2.39
6009 6614 4.737855 AAATGCAGGTCTACGAGTATGT 57.262 40.909 0.00 0.00 0.00 2.29
6010 6615 3.717400 ATGCAGGTCTACGAGTATGTG 57.283 47.619 0.00 0.00 0.00 3.21
6011 6616 2.718563 TGCAGGTCTACGAGTATGTGA 58.281 47.619 0.00 0.00 0.00 3.58
6012 6617 3.288092 TGCAGGTCTACGAGTATGTGAT 58.712 45.455 0.00 0.00 0.00 3.06
6013 6618 4.457466 TGCAGGTCTACGAGTATGTGATA 58.543 43.478 0.00 0.00 0.00 2.15
6015 6620 4.515944 GCAGGTCTACGAGTATGTGATAGT 59.484 45.833 0.00 0.00 0.00 2.12
6016 6621 5.699915 GCAGGTCTACGAGTATGTGATAGTA 59.300 44.000 0.00 0.00 0.00 1.82
6017 6622 6.204301 GCAGGTCTACGAGTATGTGATAGTAA 59.796 42.308 0.00 0.00 0.00 2.24
6018 6623 7.571613 GCAGGTCTACGAGTATGTGATAGTAAG 60.572 44.444 0.00 0.00 0.00 2.34
6020 6625 7.992033 AGGTCTACGAGTATGTGATAGTAAGTT 59.008 37.037 0.00 0.00 0.00 2.66
6021 6626 8.619546 GGTCTACGAGTATGTGATAGTAAGTTT 58.380 37.037 0.00 0.00 0.00 2.66
6022 6627 9.649024 GTCTACGAGTATGTGATAGTAAGTTTC 57.351 37.037 0.00 0.00 0.00 2.78
6025 6630 8.858003 ACGAGTATGTGATAGTAAGTTTCATG 57.142 34.615 0.00 0.00 0.00 3.07
6026 6631 8.467598 ACGAGTATGTGATAGTAAGTTTCATGT 58.532 33.333 0.00 0.00 0.00 3.21
6027 6632 9.946165 CGAGTATGTGATAGTAAGTTTCATGTA 57.054 33.333 0.00 0.00 0.00 2.29
6102 6826 4.571176 TCACGTATATATCTCGGCAGCTAG 59.429 45.833 12.56 0.00 0.00 3.42
6105 6833 4.024725 CGTATATATCTCGGCAGCTAGGTC 60.025 50.000 0.00 0.00 0.00 3.85
6117 6845 0.040246 GCTAGGTCGTACATCCGCTC 60.040 60.000 0.00 0.00 0.00 5.03
6122 6853 1.002033 GGTCGTACATCCGCTCGTATT 60.002 52.381 0.00 0.00 0.00 1.89
6131 6865 0.928229 CCGCTCGTATTGTTAGGTGC 59.072 55.000 0.00 0.00 32.29 5.01
6286 7023 6.555360 CCTCCTTGTTCTTACCTATGGTATCT 59.445 42.308 0.00 0.00 38.05 1.98
6307 7044 1.685820 CCACTTGAACCCCTCCTCC 59.314 63.158 0.00 0.00 0.00 4.30
6309 7046 2.269241 CTTGAACCCCTCCTCCGC 59.731 66.667 0.00 0.00 0.00 5.54
6350 7087 1.548269 CTTTCTTCTCCCTCTGCGTCT 59.452 52.381 0.00 0.00 0.00 4.18
6351 7088 1.178276 TTCTTCTCCCTCTGCGTCTC 58.822 55.000 0.00 0.00 0.00 3.36
6352 7089 0.681564 TCTTCTCCCTCTGCGTCTCC 60.682 60.000 0.00 0.00 0.00 3.71
6353 7090 1.999071 CTTCTCCCTCTGCGTCTCCG 61.999 65.000 0.00 0.00 37.07 4.63
6354 7091 2.752238 CTCCCTCTGCGTCTCCGT 60.752 66.667 0.00 0.00 36.15 4.69
6355 7092 2.750637 TCCCTCTGCGTCTCCGTC 60.751 66.667 0.00 0.00 36.15 4.79
6356 7093 2.752238 CCCTCTGCGTCTCCGTCT 60.752 66.667 0.00 0.00 36.15 4.18
6357 7094 2.766400 CCCTCTGCGTCTCCGTCTC 61.766 68.421 0.00 0.00 36.15 3.36
6358 7095 1.747367 CCTCTGCGTCTCCGTCTCT 60.747 63.158 0.00 0.00 36.15 3.10
6359 7096 1.427419 CTCTGCGTCTCCGTCTCTG 59.573 63.158 0.00 0.00 36.15 3.35
6360 7097 1.302383 CTCTGCGTCTCCGTCTCTGT 61.302 60.000 0.00 0.00 36.15 3.41
6361 7098 1.135731 CTGCGTCTCCGTCTCTGTC 59.864 63.158 0.00 0.00 36.15 3.51
6366 7103 3.432588 CTCCGTCTCTGTCGCCGT 61.433 66.667 0.00 0.00 0.00 5.68
6398 7135 1.609320 GCTTCTCCTTGTGGTCCTGAC 60.609 57.143 0.00 0.00 34.23 3.51
6461 7207 1.525619 GTTTCCTGTCGTCCACTTTCG 59.474 52.381 0.00 0.00 0.00 3.46
6491 7261 1.258445 TTCCTTGGCCGTCTCCTCTC 61.258 60.000 0.00 0.00 0.00 3.20
6503 7273 2.284921 CCTCTCTGTGCCTCCCCA 60.285 66.667 0.00 0.00 0.00 4.96
6592 7368 3.408851 GGTTTGTCGCCGACGTCC 61.409 66.667 13.18 10.64 41.18 4.79
6679 7488 1.307355 TTGCGTCGAGGTCGGATGTA 61.307 55.000 7.01 0.00 40.29 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.268079 TGTCCGCATCGATTTTTGCAA 59.732 42.857 9.23 0.00 38.80 4.08
39 40 2.961721 CCCGACATGTCCGCATCG 60.962 66.667 20.03 7.79 31.99 3.84
41 42 3.620419 TTGCCCGACATGTCCGCAT 62.620 57.895 26.96 0.00 33.28 4.73
58 59 2.561885 CGTCGTCGTCTGCCTCTT 59.438 61.111 0.00 0.00 0.00 2.85
157 161 1.305201 CCCCCGTTTCATCCATAACG 58.695 55.000 0.00 0.00 44.85 3.18
211 215 4.642542 GCGACGTCCTATCGGGGC 62.643 72.222 10.58 0.58 39.99 5.80
251 255 1.536922 CGATTCCTGATGGTCGACTGG 60.537 57.143 16.46 10.09 34.85 4.00
254 258 2.295253 AACGATTCCTGATGGTCGAC 57.705 50.000 7.13 7.13 35.98 4.20
255 259 3.429822 GGTAAACGATTCCTGATGGTCGA 60.430 47.826 0.30 0.00 35.98 4.20
264 268 5.586243 CACATCTTGATGGTAAACGATTCCT 59.414 40.000 14.18 0.00 0.00 3.36
281 285 1.834263 GGTCTGAGTAGGGCACATCTT 59.166 52.381 0.00 0.00 0.00 2.40
295 299 2.309528 CGATTCGGATTTGGGTCTGA 57.690 50.000 0.00 0.00 0.00 3.27
308 312 6.573725 GCTTATTTTTATGCACTACCGATTCG 59.426 38.462 0.00 0.00 0.00 3.34
309 313 6.573725 CGCTTATTTTTATGCACTACCGATTC 59.426 38.462 0.00 0.00 0.00 2.52
311 315 5.049680 CCGCTTATTTTTATGCACTACCGAT 60.050 40.000 0.00 0.00 0.00 4.18
312 316 4.271533 CCGCTTATTTTTATGCACTACCGA 59.728 41.667 0.00 0.00 0.00 4.69
314 318 5.494632 ACCGCTTATTTTTATGCACTACC 57.505 39.130 0.00 0.00 0.00 3.18
315 319 8.179615 AGTAAACCGCTTATTTTTATGCACTAC 58.820 33.333 0.00 0.00 0.00 2.73
332 336 7.060633 CACATGAGACAAAATTTAGTAAACCGC 59.939 37.037 0.00 0.00 0.00 5.68
351 355 8.404000 ACTACTACGGTTTTATAGACACATGAG 58.596 37.037 0.00 0.00 0.00 2.90
388 392 8.450780 TCCTCCCTTTCCTTCCTTTATATATC 57.549 38.462 0.00 0.00 0.00 1.63
389 393 9.063484 GATCCTCCCTTTCCTTCCTTTATATAT 57.937 37.037 0.00 0.00 0.00 0.86
420 437 3.157087 CAAACTCTTTACCAGTGGCCAT 58.843 45.455 9.72 0.00 0.00 4.40
421 438 2.582052 CAAACTCTTTACCAGTGGCCA 58.418 47.619 9.78 0.00 0.00 5.36
427 444 5.106515 GCCTTAGAAGCAAACTCTTTACCAG 60.107 44.000 0.00 0.00 0.00 4.00
435 452 2.784347 ACCAGCCTTAGAAGCAAACTC 58.216 47.619 0.00 0.00 0.00 3.01
448 465 5.763876 AACTCTAACAAAGATACCAGCCT 57.236 39.130 0.00 0.00 32.41 4.58
515 541 9.401058 CTCATCAAATATAGAGGAAGTTTTGGT 57.599 33.333 0.00 0.00 0.00 3.67
541 567 5.410355 TGGTAAACCATATATAGCGACCC 57.590 43.478 0.00 0.00 42.01 4.46
557 583 3.355378 CTGGGTCATGCTGATTGGTAAA 58.645 45.455 0.00 0.00 0.00 2.01
568 594 2.158755 AGGTATACAAGCTGGGTCATGC 60.159 50.000 5.01 0.00 33.68 4.06
606 632 9.314321 TCGTCCAATATTTAGATCTCTCAAAAC 57.686 33.333 0.00 0.00 0.00 2.43
614 640 6.957020 AGGATCCTCGTCCAATATTTAGATCT 59.043 38.462 9.02 0.00 40.90 2.75
618 644 5.928839 CACAGGATCCTCGTCCAATATTTAG 59.071 44.000 12.69 0.00 40.90 1.85
619 645 5.741964 GCACAGGATCCTCGTCCAATATTTA 60.742 44.000 12.69 0.00 40.90 1.40
620 646 4.708177 CACAGGATCCTCGTCCAATATTT 58.292 43.478 12.69 0.00 40.90 1.40
621 647 3.495100 GCACAGGATCCTCGTCCAATATT 60.495 47.826 12.69 0.00 40.90 1.28
622 648 2.037772 GCACAGGATCCTCGTCCAATAT 59.962 50.000 12.69 0.00 40.90 1.28
623 649 1.412710 GCACAGGATCCTCGTCCAATA 59.587 52.381 12.69 0.00 40.90 1.90
624 650 0.179000 GCACAGGATCCTCGTCCAAT 59.821 55.000 12.69 0.00 40.90 3.16
625 651 1.596934 GCACAGGATCCTCGTCCAA 59.403 57.895 12.69 0.00 40.90 3.53
626 652 2.359169 GGCACAGGATCCTCGTCCA 61.359 63.158 12.69 0.00 40.90 4.02
627 653 2.501610 GGCACAGGATCCTCGTCC 59.498 66.667 12.69 9.10 38.62 4.79
628 654 2.105128 CGGCACAGGATCCTCGTC 59.895 66.667 12.69 6.78 0.00 4.20
629 655 2.680352 ACGGCACAGGATCCTCGT 60.680 61.111 17.86 17.86 0.00 4.18
630 656 2.202797 CACGGCACAGGATCCTCG 60.203 66.667 12.69 15.15 0.00 4.63
631 657 1.448540 CACACGGCACAGGATCCTC 60.449 63.158 12.69 0.00 0.00 3.71
632 658 2.665000 CACACGGCACAGGATCCT 59.335 61.111 9.02 9.02 0.00 3.24
633 659 2.436646 CCACACGGCACAGGATCC 60.437 66.667 2.48 2.48 0.00 3.36
650 676 4.980805 TGACGAACGGCACCCTGC 62.981 66.667 0.00 0.00 44.08 4.85
656 682 1.007734 GAGTCAGTGACGAACGGCA 60.008 57.895 17.40 0.00 37.67 5.69
657 683 2.081212 CGAGTCAGTGACGAACGGC 61.081 63.158 22.68 9.53 37.67 5.68
658 684 0.997226 CACGAGTCAGTGACGAACGG 60.997 60.000 28.63 19.73 44.43 4.44
659 685 0.997226 CCACGAGTCAGTGACGAACG 60.997 60.000 26.00 26.00 44.43 3.95
660 686 0.663568 CCCACGAGTCAGTGACGAAC 60.664 60.000 17.40 11.79 44.43 3.95
661 687 1.658114 CCCACGAGTCAGTGACGAA 59.342 57.895 17.40 0.00 44.43 3.85
662 688 2.916052 GCCCACGAGTCAGTGACGA 61.916 63.158 17.40 0.00 44.43 4.20
663 689 2.430921 GCCCACGAGTCAGTGACG 60.431 66.667 17.40 9.50 44.43 4.35
664 690 2.048127 GGCCCACGAGTCAGTGAC 60.048 66.667 15.78 15.78 44.43 3.67
665 691 3.311110 GGGCCCACGAGTCAGTGA 61.311 66.667 19.95 0.00 44.43 3.41
666 692 4.394712 GGGGCCCACGAGTCAGTG 62.395 72.222 26.86 7.78 41.53 3.66
673 699 3.968837 ATACAGTCGGGGCCCACGA 62.969 63.158 26.86 26.21 38.13 4.35
674 700 3.467226 ATACAGTCGGGGCCCACG 61.467 66.667 26.86 24.26 0.00 4.94
675 701 2.189521 CATACAGTCGGGGCCCAC 59.810 66.667 26.86 19.24 0.00 4.61
676 702 2.285069 ACATACAGTCGGGGCCCA 60.285 61.111 26.86 7.03 0.00 5.36
677 703 2.504519 GACATACAGTCGGGGCCC 59.495 66.667 15.76 15.76 37.53 5.80
678 704 3.231424 CTCTGACATACAGTCGGGGCC 62.231 61.905 0.00 0.00 46.61 5.80
679 705 0.103208 CTCTGACATACAGTCGGGGC 59.897 60.000 4.42 0.00 46.61 5.80
684 710 4.805956 GGGAGCTCCTCTGACATACAGTC 61.806 56.522 31.36 6.42 45.86 3.51
685 711 2.383855 GGAGCTCCTCTGACATACAGT 58.616 52.381 26.25 0.00 45.86 3.55
686 712 1.686052 GGGAGCTCCTCTGACATACAG 59.314 57.143 31.36 0.00 46.97 2.74
687 713 1.289231 AGGGAGCTCCTCTGACATACA 59.711 52.381 31.36 0.00 44.06 2.29
688 714 2.080654 AGGGAGCTCCTCTGACATAC 57.919 55.000 31.36 11.99 44.06 2.39
698 724 3.910627 TGAATATTTAGGGAGGGAGCTCC 59.089 47.826 25.59 25.59 42.62 4.70
699 725 4.348168 TGTGAATATTTAGGGAGGGAGCTC 59.652 45.833 4.71 4.71 0.00 4.09
700 726 4.307259 TGTGAATATTTAGGGAGGGAGCT 58.693 43.478 0.00 0.00 0.00 4.09
701 727 4.706842 TGTGAATATTTAGGGAGGGAGC 57.293 45.455 0.00 0.00 0.00 4.70
702 728 6.841601 TCAATGTGAATATTTAGGGAGGGAG 58.158 40.000 0.00 0.00 0.00 4.30
703 729 6.840090 TCAATGTGAATATTTAGGGAGGGA 57.160 37.500 0.00 0.00 0.00 4.20
704 730 7.233632 TGATCAATGTGAATATTTAGGGAGGG 58.766 38.462 0.00 0.00 0.00 4.30
705 731 8.571336 GTTGATCAATGTGAATATTTAGGGAGG 58.429 37.037 12.12 0.00 0.00 4.30
706 732 9.347240 AGTTGATCAATGTGAATATTTAGGGAG 57.653 33.333 12.12 0.00 0.00 4.30
745 771 9.345517 CCAACACTACTTTATTGATCAAATGTG 57.654 33.333 13.09 14.26 0.00 3.21
746 772 8.028938 GCCAACACTACTTTATTGATCAAATGT 58.971 33.333 13.09 10.92 0.00 2.71
747 773 8.028354 TGCCAACACTACTTTATTGATCAAATG 58.972 33.333 13.09 5.62 0.00 2.32
748 774 8.121305 TGCCAACACTACTTTATTGATCAAAT 57.879 30.769 13.09 4.08 0.00 2.32
749 775 7.517614 TGCCAACACTACTTTATTGATCAAA 57.482 32.000 13.09 0.00 0.00 2.69
785 859 6.420903 GCCAGGAGACAAAATTTAGTGTTTTC 59.579 38.462 0.00 0.00 0.00 2.29
789 863 4.520492 CAGCCAGGAGACAAAATTTAGTGT 59.480 41.667 0.00 0.00 0.00 3.55
885 962 0.394080 GGGCTCAGCTTGCTTCTGAT 60.394 55.000 0.00 0.00 39.56 2.90
960 1215 3.443045 GCTTGCGGATGTGGTGGG 61.443 66.667 0.00 0.00 0.00 4.61
992 1247 1.592669 CCGGCTAGTTGCAGATCCG 60.593 63.158 0.00 7.63 45.15 4.18
1013 1268 2.195139 GAGACGGATCGGGAGGGA 59.805 66.667 5.18 0.00 0.00 4.20
1275 1530 4.507335 CCAATCCAACCCAAAGAAGAGAGA 60.507 45.833 0.00 0.00 0.00 3.10
1276 1531 3.760684 CCAATCCAACCCAAAGAAGAGAG 59.239 47.826 0.00 0.00 0.00 3.20
1328 1590 3.072038 TCGAGATCTCAATTGGCATGGAT 59.928 43.478 22.31 2.61 0.00 3.41
1342 1604 2.173356 TCCAATTGGCCAATCGAGATCT 59.827 45.455 30.74 11.12 34.44 2.75
1379 1644 2.972713 GGTGCAGTCTCCCCTATTATCA 59.027 50.000 0.00 0.00 0.00 2.15
1474 1740 1.372087 GCTCATCAAACCTGCTCCCG 61.372 60.000 0.00 0.00 0.00 5.14
1497 1763 1.445871 AGATTAACACCGCCCGTTTC 58.554 50.000 0.00 0.00 0.00 2.78
1590 1856 3.872511 TGCGGCAAAATTCATCTTGAT 57.127 38.095 0.00 0.00 0.00 2.57
1591 1857 3.255395 TCTTGCGGCAAAATTCATCTTGA 59.745 39.130 17.13 3.51 0.00 3.02
1592 1858 3.577667 TCTTGCGGCAAAATTCATCTTG 58.422 40.909 17.13 1.03 0.00 3.02
1593 1859 3.940209 TCTTGCGGCAAAATTCATCTT 57.060 38.095 17.13 0.00 0.00 2.40
1594 1860 3.181483 GGATCTTGCGGCAAAATTCATCT 60.181 43.478 17.13 0.00 0.00 2.90
1595 1861 3.118542 GGATCTTGCGGCAAAATTCATC 58.881 45.455 17.13 11.84 0.00 2.92
1596 1862 2.159057 GGGATCTTGCGGCAAAATTCAT 60.159 45.455 17.13 3.97 0.00 2.57
1597 1863 1.204467 GGGATCTTGCGGCAAAATTCA 59.796 47.619 17.13 0.00 0.00 2.57
1598 1864 1.478105 AGGGATCTTGCGGCAAAATTC 59.522 47.619 17.13 7.87 0.00 2.17
1599 1865 1.560505 AGGGATCTTGCGGCAAAATT 58.439 45.000 17.13 4.21 0.00 1.82
1600 1866 1.560505 AAGGGATCTTGCGGCAAAAT 58.439 45.000 17.13 9.30 0.00 1.82
1601 1867 1.272212 GAAAGGGATCTTGCGGCAAAA 59.728 47.619 17.13 3.56 32.75 2.44
1603 1869 0.251121 TGAAAGGGATCTTGCGGCAA 60.251 50.000 15.55 15.55 30.94 4.52
1604 1870 0.034186 ATGAAAGGGATCTTGCGGCA 60.034 50.000 0.00 0.00 30.94 5.69
1605 1871 0.665298 GATGAAAGGGATCTTGCGGC 59.335 55.000 0.00 0.00 30.94 6.53
1606 1872 1.133976 AGGATGAAAGGGATCTTGCGG 60.134 52.381 0.00 0.00 30.94 5.69
1607 1873 2.216898 GAGGATGAAAGGGATCTTGCG 58.783 52.381 0.00 0.00 30.94 4.85
1608 1874 3.287867 TGAGGATGAAAGGGATCTTGC 57.712 47.619 0.00 0.00 32.75 4.01
1609 1875 5.443283 TGAATGAGGATGAAAGGGATCTTG 58.557 41.667 0.00 0.00 32.75 3.02
1610 1876 5.722172 TGAATGAGGATGAAAGGGATCTT 57.278 39.130 0.00 0.00 34.07 2.40
1611 1877 5.222089 GGATGAATGAGGATGAAAGGGATCT 60.222 44.000 0.00 0.00 0.00 2.75
1669 1938 0.313672 GGTGAATTCGGCTTGCAACA 59.686 50.000 0.00 0.00 0.00 3.33
1672 1941 0.825425 TTGGGTGAATTCGGCTTGCA 60.825 50.000 0.04 0.00 0.00 4.08
1673 1942 0.532115 ATTGGGTGAATTCGGCTTGC 59.468 50.000 0.04 0.00 0.00 4.01
1694 1963 7.709947 AGCACATTAATGGAACTGATGTAATG 58.290 34.615 19.37 5.17 30.39 1.90
1742 2011 4.727734 GCATAGAACAAACATACACAGCGG 60.728 45.833 0.00 0.00 0.00 5.52
1834 2103 3.066621 TGCACTTCTCCACAATTGTTGTC 59.933 43.478 8.77 0.83 43.23 3.18
1861 2130 5.630680 GTGTTTGTATTCATCAACCAGCTTG 59.369 40.000 0.00 0.00 0.00 4.01
1940 2209 4.070716 GCATCCTAGCAGTGCTTCATTAT 58.929 43.478 25.23 7.56 40.44 1.28
2017 2286 4.181578 CGTTATGATCAAACCGAAGTCCT 58.818 43.478 0.00 0.00 0.00 3.85
2034 2303 5.299279 CCTGCAGAAAACATTATCCCGTTAT 59.701 40.000 17.39 0.00 0.00 1.89
2085 2354 5.321102 TGCAATGTCCCAGTAACAATAAGT 58.679 37.500 0.00 0.00 0.00 2.24
2174 2443 7.510549 TTAACAGAAATGAGAAAGGAACCAG 57.489 36.000 0.00 0.00 0.00 4.00
2236 2505 1.820519 GCAATGCTGTTGATTGGAGGA 59.179 47.619 0.00 0.00 32.38 3.71
2238 2507 3.119280 TGATGCAATGCTGTTGATTGGAG 60.119 43.478 6.82 0.00 35.02 3.86
2239 2508 2.826725 TGATGCAATGCTGTTGATTGGA 59.173 40.909 6.82 0.00 35.86 3.53
2734 3179 4.564782 AACATGGAGATCTGTCACACAT 57.435 40.909 0.00 0.00 0.00 3.21
2756 3202 4.637091 CAGATGTCTGTGAATGTAATGGCA 59.363 41.667 1.84 0.00 39.09 4.92
2880 3326 5.420409 AGTAATGCTAGTGCTACTTCCAAC 58.580 41.667 0.00 0.00 40.48 3.77
2979 3427 2.775890 ACATCTTCACAGACAGCCAAG 58.224 47.619 0.00 0.00 0.00 3.61
3196 3644 3.953612 TCAATGGCCCTATCACAAACATC 59.046 43.478 0.00 0.00 0.00 3.06
3283 3731 6.587273 AGGTATGAAGCTTCTCCATTCTTAC 58.413 40.000 26.09 11.34 34.93 2.34
3553 4084 6.425114 ACACAGAAAATAGACTGTTGCTACTG 59.575 38.462 3.77 3.77 43.52 2.74
3573 4108 8.161610 CGTTTTTGGCAATAATTATCAACACAG 58.838 33.333 0.00 0.00 0.00 3.66
3679 4216 3.273618 ACCCAGGATAAATTGGCCCTAAA 59.726 43.478 0.00 0.00 32.98 1.85
3702 4239 1.063190 AGGTCGATGATGTGTCCCCTA 60.063 52.381 0.00 0.00 0.00 3.53
3710 4248 0.391661 GGCACACAGGTCGATGATGT 60.392 55.000 0.00 0.00 0.00 3.06
3711 4249 0.107993 AGGCACACAGGTCGATGATG 60.108 55.000 0.00 0.00 0.00 3.07
3712 4250 0.107993 CAGGCACACAGGTCGATGAT 60.108 55.000 0.00 0.00 0.00 2.45
3713 4251 1.293179 CAGGCACACAGGTCGATGA 59.707 57.895 0.00 0.00 0.00 2.92
3750 4288 6.183360 CCACAAAAGCATCTCCAATGGAATAT 60.183 38.462 2.61 0.00 0.00 1.28
3816 4360 5.374921 ACTGCAGCTGATATAAAAGAGCAT 58.625 37.500 20.43 0.00 33.67 3.79
3891 4435 5.118664 TGTTAATCTTCGTGCGAGAAAAGAG 59.881 40.000 0.00 0.00 31.75 2.85
3925 4469 8.667463 CCACATAGGGCAATTTTCAATAAAAAG 58.333 33.333 0.00 0.00 40.09 2.27
4018 4569 6.664515 TGTGTGTTACTGTTAGCTAAAATGC 58.335 36.000 7.99 0.00 0.00 3.56
4102 4653 7.170965 AGAGAGCATAAATCAGAACAGGAAAA 58.829 34.615 0.00 0.00 0.00 2.29
4140 4691 5.941948 AATGTAGTAGCACACTCAAAACC 57.058 39.130 0.00 0.00 38.80 3.27
4222 4773 4.774124 TGTTGAGATTTCCCTATGCTCTG 58.226 43.478 0.00 0.00 0.00 3.35
4240 4791 7.246311 CCTCTTGAAATACTACATGCTTGTTG 58.754 38.462 10.85 11.28 37.28 3.33
4362 4919 3.321648 ACCTGCGGGATGAGCACA 61.322 61.111 21.41 0.00 40.01 4.57
4564 5121 9.431887 TGTTGTTATTCCTGTCAGATAGTTTAC 57.568 33.333 0.00 0.00 0.00 2.01
4695 5255 7.851114 TGACTAAATCAGCCTACCAATAGTTGG 60.851 40.741 7.16 7.16 43.87 3.77
4696 5256 7.047891 TGACTAAATCAGCCTACCAATAGTTG 58.952 38.462 0.00 0.00 31.91 3.16
4748 5309 1.606531 GGTGCTGCAATCCCTCTCT 59.393 57.895 2.77 0.00 0.00 3.10
4749 5310 1.452833 GGGTGCTGCAATCCCTCTC 60.453 63.158 18.40 0.00 38.29 3.20
4750 5311 2.679716 GGGTGCTGCAATCCCTCT 59.320 61.111 18.40 0.00 38.29 3.69
4751 5312 2.825836 CGGGTGCTGCAATCCCTC 60.826 66.667 21.79 2.61 39.10 4.30
4752 5313 3.329889 TCGGGTGCTGCAATCCCT 61.330 61.111 21.79 0.00 39.10 4.20
4753 5314 2.825836 CTCGGGTGCTGCAATCCC 60.826 66.667 16.31 16.31 37.98 3.85
4754 5315 3.512516 GCTCGGGTGCTGCAATCC 61.513 66.667 2.77 8.58 0.00 3.01
4755 5316 2.437359 AGCTCGGGTGCTGCAATC 60.437 61.111 2.77 0.00 42.33 2.67
4756 5317 2.437359 GAGCTCGGGTGCTGCAAT 60.437 61.111 2.77 0.00 44.17 3.56
4760 5321 3.699894 AGTGGAGCTCGGGTGCTG 61.700 66.667 7.83 0.00 44.17 4.41
4763 5324 3.699894 AGCAGTGGAGCTCGGGTG 61.700 66.667 7.83 5.57 42.18 4.61
4770 5331 6.015856 TGTTTAGATATAGAGAGCAGTGGAGC 60.016 42.308 0.00 0.00 0.00 4.70
4771 5332 7.517614 TGTTTAGATATAGAGAGCAGTGGAG 57.482 40.000 0.00 0.00 0.00 3.86
4772 5333 8.484214 AATGTTTAGATATAGAGAGCAGTGGA 57.516 34.615 0.00 0.00 0.00 4.02
4773 5334 9.553064 AAAATGTTTAGATATAGAGAGCAGTGG 57.447 33.333 0.00 0.00 0.00 4.00
4827 5388 8.421002 CGTATCCCTGGGAAAAATTTCATATTT 58.579 33.333 21.42 0.00 38.92 1.40
4828 5389 7.563556 ACGTATCCCTGGGAAAAATTTCATATT 59.436 33.333 21.42 0.22 38.92 1.28
4829 5390 7.066781 ACGTATCCCTGGGAAAAATTTCATAT 58.933 34.615 21.42 0.44 38.92 1.78
4830 5391 6.428295 ACGTATCCCTGGGAAAAATTTCATA 58.572 36.000 21.42 0.74 38.92 2.15
4831 5392 5.269189 ACGTATCCCTGGGAAAAATTTCAT 58.731 37.500 21.42 1.84 38.92 2.57
4832 5393 4.668636 ACGTATCCCTGGGAAAAATTTCA 58.331 39.130 21.42 0.00 38.92 2.69
4833 5394 6.954487 ATACGTATCCCTGGGAAAAATTTC 57.046 37.500 21.42 0.00 34.34 2.17
4834 5395 7.348033 TGTATACGTATCCCTGGGAAAAATTT 58.652 34.615 21.42 4.31 34.34 1.82
4835 5396 6.902408 TGTATACGTATCCCTGGGAAAAATT 58.098 36.000 21.42 5.14 34.34 1.82
4836 5397 6.503560 TGTATACGTATCCCTGGGAAAAAT 57.496 37.500 21.42 11.39 34.34 1.82
4837 5398 5.954153 TGTATACGTATCCCTGGGAAAAA 57.046 39.130 21.42 5.56 34.34 1.94
4838 5399 7.801893 ATATGTATACGTATCCCTGGGAAAA 57.198 36.000 21.42 8.38 34.34 2.29
4839 5400 7.093201 GGAATATGTATACGTATCCCTGGGAAA 60.093 40.741 21.42 0.00 34.34 3.13
4840 5401 6.381994 GGAATATGTATACGTATCCCTGGGAA 59.618 42.308 21.42 2.42 34.34 3.97
4841 5402 5.895534 GGAATATGTATACGTATCCCTGGGA 59.104 44.000 19.69 19.69 35.55 4.37
4842 5403 5.897824 AGGAATATGTATACGTATCCCTGGG 59.102 44.000 19.17 6.33 32.23 4.45
4843 5404 8.529424 TTAGGAATATGTATACGTATCCCTGG 57.471 38.462 25.54 0.00 34.10 4.45
4852 5413 9.464714 GCCACAGATATTAGGAATATGTATACG 57.535 37.037 0.00 0.00 34.31 3.06
4855 5416 9.896645 CTTGCCACAGATATTAGGAATATGTAT 57.103 33.333 0.00 0.00 34.31 2.29
4856 5417 8.880244 ACTTGCCACAGATATTAGGAATATGTA 58.120 33.333 0.00 0.00 34.31 2.29
4857 5418 7.749666 ACTTGCCACAGATATTAGGAATATGT 58.250 34.615 0.00 0.00 34.31 2.29
4858 5419 8.627208 AACTTGCCACAGATATTAGGAATATG 57.373 34.615 0.00 0.00 34.31 1.78
4859 5420 9.289782 GAAACTTGCCACAGATATTAGGAATAT 57.710 33.333 0.00 0.00 36.80 1.28
4860 5421 7.441157 CGAAACTTGCCACAGATATTAGGAATA 59.559 37.037 0.00 0.00 0.00 1.75
4861 5422 6.260936 CGAAACTTGCCACAGATATTAGGAAT 59.739 38.462 0.00 0.00 0.00 3.01
4862 5423 5.584649 CGAAACTTGCCACAGATATTAGGAA 59.415 40.000 0.00 0.00 0.00 3.36
4863 5424 5.116180 CGAAACTTGCCACAGATATTAGGA 58.884 41.667 0.00 0.00 0.00 2.94
4864 5425 4.273480 CCGAAACTTGCCACAGATATTAGG 59.727 45.833 0.00 0.00 0.00 2.69
4865 5426 4.876107 ACCGAAACTTGCCACAGATATTAG 59.124 41.667 0.00 0.00 0.00 1.73
4866 5427 4.839121 ACCGAAACTTGCCACAGATATTA 58.161 39.130 0.00 0.00 0.00 0.98
4867 5428 3.686016 ACCGAAACTTGCCACAGATATT 58.314 40.909 0.00 0.00 0.00 1.28
4868 5429 3.350219 ACCGAAACTTGCCACAGATAT 57.650 42.857 0.00 0.00 0.00 1.63
4869 5430 2.851263 ACCGAAACTTGCCACAGATA 57.149 45.000 0.00 0.00 0.00 1.98
4870 5431 2.301870 TCTACCGAAACTTGCCACAGAT 59.698 45.455 0.00 0.00 0.00 2.90
4871 5432 1.689813 TCTACCGAAACTTGCCACAGA 59.310 47.619 0.00 0.00 0.00 3.41
4872 5433 2.163818 TCTACCGAAACTTGCCACAG 57.836 50.000 0.00 0.00 0.00 3.66
4873 5434 2.623878 TTCTACCGAAACTTGCCACA 57.376 45.000 0.00 0.00 0.00 4.17
4874 5435 3.751698 AGATTTCTACCGAAACTTGCCAC 59.248 43.478 0.00 0.00 41.58 5.01
4875 5436 4.000988 GAGATTTCTACCGAAACTTGCCA 58.999 43.478 0.00 0.00 41.58 4.92
4876 5437 4.000988 TGAGATTTCTACCGAAACTTGCC 58.999 43.478 0.00 0.00 41.58 4.52
4877 5438 5.803020 ATGAGATTTCTACCGAAACTTGC 57.197 39.130 0.00 0.00 41.58 4.01
4878 5439 8.076178 ACAAAATGAGATTTCTACCGAAACTTG 58.924 33.333 0.00 0.00 41.58 3.16
4879 5440 8.166422 ACAAAATGAGATTTCTACCGAAACTT 57.834 30.769 0.00 0.00 41.58 2.66
4880 5441 7.745620 ACAAAATGAGATTTCTACCGAAACT 57.254 32.000 0.00 0.00 41.58 2.66
4881 5442 8.797266 AAACAAAATGAGATTTCTACCGAAAC 57.203 30.769 0.00 0.00 41.58 2.78
4882 5443 9.810545 AAAAACAAAATGAGATTTCTACCGAAA 57.189 25.926 0.00 0.00 42.83 3.46
4883 5444 9.243637 CAAAAACAAAATGAGATTTCTACCGAA 57.756 29.630 0.00 0.00 0.00 4.30
4884 5445 7.865385 CCAAAAACAAAATGAGATTTCTACCGA 59.135 33.333 0.00 0.00 0.00 4.69
4885 5446 7.359181 GCCAAAAACAAAATGAGATTTCTACCG 60.359 37.037 0.00 0.00 0.00 4.02
4886 5447 7.657354 AGCCAAAAACAAAATGAGATTTCTACC 59.343 33.333 0.00 0.00 0.00 3.18
4887 5448 8.593492 AGCCAAAAACAAAATGAGATTTCTAC 57.407 30.769 0.00 0.00 0.00 2.59
4925 5486 9.844257 CCTTTTCTCCTATATTCTGTCAGAAAT 57.156 33.333 18.93 14.78 37.82 2.17
4926 5487 8.267894 CCCTTTTCTCCTATATTCTGTCAGAAA 58.732 37.037 18.93 9.18 37.82 2.52
4927 5488 7.623677 TCCCTTTTCTCCTATATTCTGTCAGAA 59.376 37.037 17.46 17.46 38.78 3.02
4928 5489 7.132805 TCCCTTTTCTCCTATATTCTGTCAGA 58.867 38.462 0.00 0.00 0.00 3.27
4929 5490 7.366847 TCCCTTTTCTCCTATATTCTGTCAG 57.633 40.000 0.00 0.00 0.00 3.51
4930 5491 7.937700 ATCCCTTTTCTCCTATATTCTGTCA 57.062 36.000 0.00 0.00 0.00 3.58
4931 5492 9.278978 GAAATCCCTTTTCTCCTATATTCTGTC 57.721 37.037 0.00 0.00 40.54 3.51
4971 5532 9.974980 GAAAAAGAAATACTTTGTGTTATGGGA 57.025 29.630 0.00 0.00 46.55 4.37
4972 5533 9.757227 TGAAAAAGAAATACTTTGTGTTATGGG 57.243 29.630 0.00 0.00 46.55 4.00
4984 5545 9.908152 CCGGTAAAAATCTGAAAAAGAAATACT 57.092 29.630 0.00 0.00 38.79 2.12
4985 5546 9.135843 CCCGGTAAAAATCTGAAAAAGAAATAC 57.864 33.333 0.00 0.00 38.79 1.89
4986 5547 7.815549 GCCCGGTAAAAATCTGAAAAAGAAATA 59.184 33.333 0.00 0.00 38.79 1.40
4987 5548 6.649141 GCCCGGTAAAAATCTGAAAAAGAAAT 59.351 34.615 0.00 0.00 38.79 2.17
4988 5549 5.986741 GCCCGGTAAAAATCTGAAAAAGAAA 59.013 36.000 0.00 0.00 38.79 2.52
4989 5550 5.510009 GGCCCGGTAAAAATCTGAAAAAGAA 60.510 40.000 0.00 0.00 38.79 2.52
4990 5551 4.021807 GGCCCGGTAAAAATCTGAAAAAGA 60.022 41.667 0.00 0.00 39.94 2.52
4991 5552 4.021456 AGGCCCGGTAAAAATCTGAAAAAG 60.021 41.667 0.00 0.00 0.00 2.27
4992 5553 3.898741 AGGCCCGGTAAAAATCTGAAAAA 59.101 39.130 0.00 0.00 0.00 1.94
4993 5554 3.502356 AGGCCCGGTAAAAATCTGAAAA 58.498 40.909 0.00 0.00 0.00 2.29
4994 5555 3.163616 AGGCCCGGTAAAAATCTGAAA 57.836 42.857 0.00 0.00 0.00 2.69
4995 5556 2.891191 AGGCCCGGTAAAAATCTGAA 57.109 45.000 0.00 0.00 0.00 3.02
4996 5557 2.891191 AAGGCCCGGTAAAAATCTGA 57.109 45.000 0.00 0.00 0.00 3.27
4997 5558 2.949644 CCTAAGGCCCGGTAAAAATCTG 59.050 50.000 0.00 0.00 0.00 2.90
4998 5559 2.848071 TCCTAAGGCCCGGTAAAAATCT 59.152 45.455 0.00 0.00 0.00 2.40
4999 5560 3.286329 TCCTAAGGCCCGGTAAAAATC 57.714 47.619 0.00 0.00 0.00 2.17
5000 5561 3.958147 CAATCCTAAGGCCCGGTAAAAAT 59.042 43.478 0.00 0.00 0.00 1.82
5001 5562 3.245336 ACAATCCTAAGGCCCGGTAAAAA 60.245 43.478 0.00 0.00 0.00 1.94
5002 5563 2.309458 ACAATCCTAAGGCCCGGTAAAA 59.691 45.455 0.00 0.00 0.00 1.52
5003 5564 1.917568 ACAATCCTAAGGCCCGGTAAA 59.082 47.619 0.00 0.00 0.00 2.01
5004 5565 1.210967 CACAATCCTAAGGCCCGGTAA 59.789 52.381 0.00 0.00 0.00 2.85
5005 5566 0.834612 CACAATCCTAAGGCCCGGTA 59.165 55.000 0.00 0.00 0.00 4.02
5006 5567 1.205460 ACACAATCCTAAGGCCCGGT 61.205 55.000 0.00 0.00 0.00 5.28
5007 5568 0.748005 CACACAATCCTAAGGCCCGG 60.748 60.000 0.00 0.00 0.00 5.73
5008 5569 0.035439 ACACACAATCCTAAGGCCCG 60.035 55.000 0.00 0.00 0.00 6.13
5009 5570 3.214328 CATACACACAATCCTAAGGCCC 58.786 50.000 0.00 0.00 0.00 5.80
5010 5571 3.886123 ACATACACACAATCCTAAGGCC 58.114 45.455 0.00 0.00 0.00 5.19
5011 5572 6.765989 TGAATACATACACACAATCCTAAGGC 59.234 38.462 0.00 0.00 0.00 4.35
5012 5573 7.042725 CGTGAATACATACACACAATCCTAAGG 60.043 40.741 0.00 0.00 36.91 2.69
5013 5574 7.491372 ACGTGAATACATACACACAATCCTAAG 59.509 37.037 0.00 0.00 36.91 2.18
5014 5575 7.324935 ACGTGAATACATACACACAATCCTAA 58.675 34.615 0.00 0.00 36.91 2.69
5015 5576 6.869695 ACGTGAATACATACACACAATCCTA 58.130 36.000 0.00 0.00 36.91 2.94
5016 5577 5.730550 ACGTGAATACATACACACAATCCT 58.269 37.500 0.00 0.00 36.91 3.24
5017 5578 7.709269 ATACGTGAATACATACACACAATCC 57.291 36.000 0.00 0.00 36.91 3.01
5018 5579 9.420966 CAAATACGTGAATACATACACACAATC 57.579 33.333 0.00 0.00 36.91 2.67
5019 5580 9.157104 TCAAATACGTGAATACATACACACAAT 57.843 29.630 0.00 0.00 36.91 2.71
5020 5581 8.535690 TCAAATACGTGAATACATACACACAA 57.464 30.769 0.00 0.00 36.91 3.33
5021 5582 8.710835 ATCAAATACGTGAATACATACACACA 57.289 30.769 0.00 0.00 36.91 3.72
5022 5583 9.982291 AAATCAAATACGTGAATACATACACAC 57.018 29.630 0.00 0.00 36.91 3.82
5056 5617 2.553086 ACACACTTCCGTCGCTAAAAA 58.447 42.857 0.00 0.00 0.00 1.94
5057 5618 2.228138 ACACACTTCCGTCGCTAAAA 57.772 45.000 0.00 0.00 0.00 1.52
5058 5619 2.228138 AACACACTTCCGTCGCTAAA 57.772 45.000 0.00 0.00 0.00 1.85
5059 5620 2.228138 AAACACACTTCCGTCGCTAA 57.772 45.000 0.00 0.00 0.00 3.09
5060 5621 2.228138 AAAACACACTTCCGTCGCTA 57.772 45.000 0.00 0.00 0.00 4.26
5061 5622 1.329599 GAAAAACACACTTCCGTCGCT 59.670 47.619 0.00 0.00 0.00 4.93
5062 5623 1.062880 TGAAAAACACACTTCCGTCGC 59.937 47.619 0.00 0.00 0.00 5.19
5063 5624 3.392769 TTGAAAAACACACTTCCGTCG 57.607 42.857 0.00 0.00 0.00 5.12
5064 5625 6.641176 AATTTTGAAAAACACACTTCCGTC 57.359 33.333 0.00 0.00 0.00 4.79
5065 5626 7.171678 TGAAAATTTTGAAAAACACACTTCCGT 59.828 29.630 8.47 0.00 0.00 4.69
5066 5627 7.513968 TGAAAATTTTGAAAAACACACTTCCG 58.486 30.769 8.47 0.00 0.00 4.30
5067 5628 9.670719 TTTGAAAATTTTGAAAAACACACTTCC 57.329 25.926 12.33 0.00 0.00 3.46
5077 5638 8.835439 GCTCCTGGTATTTGAAAATTTTGAAAA 58.165 29.630 17.51 13.22 27.73 2.29
5078 5639 7.443879 GGCTCCTGGTATTTGAAAATTTTGAAA 59.556 33.333 16.22 16.22 0.00 2.69
5079 5640 6.934083 GGCTCCTGGTATTTGAAAATTTTGAA 59.066 34.615 8.47 3.01 0.00 2.69
5080 5641 6.042552 TGGCTCCTGGTATTTGAAAATTTTGA 59.957 34.615 8.47 0.00 0.00 2.69
5081 5642 6.229733 TGGCTCCTGGTATTTGAAAATTTTG 58.770 36.000 8.47 0.00 0.00 2.44
5082 5643 6.432403 TGGCTCCTGGTATTTGAAAATTTT 57.568 33.333 2.28 2.28 0.00 1.82
5083 5644 6.408869 CATGGCTCCTGGTATTTGAAAATTT 58.591 36.000 0.00 0.00 0.00 1.82
5084 5645 5.104817 CCATGGCTCCTGGTATTTGAAAATT 60.105 40.000 0.00 0.00 0.00 1.82
5085 5646 4.406649 CCATGGCTCCTGGTATTTGAAAAT 59.593 41.667 0.00 0.00 0.00 1.82
5086 5647 3.768757 CCATGGCTCCTGGTATTTGAAAA 59.231 43.478 0.00 0.00 0.00 2.29
5087 5648 3.011144 TCCATGGCTCCTGGTATTTGAAA 59.989 43.478 6.96 0.00 35.19 2.69
5088 5649 2.580322 TCCATGGCTCCTGGTATTTGAA 59.420 45.455 6.96 0.00 35.19 2.69
5089 5650 2.173356 CTCCATGGCTCCTGGTATTTGA 59.827 50.000 6.96 0.00 35.19 2.69
5090 5651 2.173356 TCTCCATGGCTCCTGGTATTTG 59.827 50.000 6.96 0.00 35.19 2.32
5091 5652 2.173569 GTCTCCATGGCTCCTGGTATTT 59.826 50.000 6.96 0.00 35.19 1.40
5092 5653 1.771255 GTCTCCATGGCTCCTGGTATT 59.229 52.381 6.96 0.00 35.19 1.89
5093 5654 1.428869 GTCTCCATGGCTCCTGGTAT 58.571 55.000 6.96 0.00 35.19 2.73
5094 5655 0.691078 GGTCTCCATGGCTCCTGGTA 60.691 60.000 6.96 0.00 35.19 3.25
5095 5656 1.997874 GGTCTCCATGGCTCCTGGT 60.998 63.158 6.96 0.00 35.19 4.00
5096 5657 1.692042 AGGTCTCCATGGCTCCTGG 60.692 63.158 17.28 0.00 34.93 4.45
5097 5658 1.525923 CAGGTCTCCATGGCTCCTG 59.474 63.158 24.41 24.41 39.41 3.86
5098 5659 1.692042 CCAGGTCTCCATGGCTCCT 60.692 63.158 6.96 11.36 0.00 3.69
5099 5660 1.690633 TCCAGGTCTCCATGGCTCC 60.691 63.158 6.96 9.14 36.47 4.70
5100 5661 1.828768 CTCCAGGTCTCCATGGCTC 59.171 63.158 6.96 0.00 36.47 4.70
5101 5662 2.373707 GCTCCAGGTCTCCATGGCT 61.374 63.158 6.96 0.00 36.47 4.75
5102 5663 2.191641 GCTCCAGGTCTCCATGGC 59.808 66.667 6.96 0.00 36.47 4.40
5103 5664 1.525923 CAGCTCCAGGTCTCCATGG 59.474 63.158 4.97 4.97 37.97 3.66
5104 5665 1.153208 GCAGCTCCAGGTCTCCATG 60.153 63.158 0.00 0.00 0.00 3.66
5105 5666 1.203441 TTGCAGCTCCAGGTCTCCAT 61.203 55.000 0.00 0.00 0.00 3.41
5106 5667 1.834856 CTTGCAGCTCCAGGTCTCCA 61.835 60.000 0.00 0.00 0.00 3.86
5107 5668 1.078567 CTTGCAGCTCCAGGTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
5108 5669 1.744741 GCTTGCAGCTCCAGGTCTC 60.745 63.158 0.00 0.00 38.45 3.36
5109 5670 2.350514 GCTTGCAGCTCCAGGTCT 59.649 61.111 0.00 0.00 38.45 3.85
5110 5671 2.033141 TGCTTGCAGCTCCAGGTC 59.967 61.111 9.12 0.00 42.97 3.85
5111 5672 2.033757 CTGCTTGCAGCTCCAGGT 59.966 61.111 9.78 0.00 42.97 4.00
5112 5673 1.177256 AAACTGCTTGCAGCTCCAGG 61.177 55.000 20.92 0.00 42.97 4.45
5113 5674 0.672342 AAAACTGCTTGCAGCTCCAG 59.328 50.000 20.92 0.00 42.97 3.86
5114 5675 0.670162 GAAAACTGCTTGCAGCTCCA 59.330 50.000 20.92 0.00 42.97 3.86
5115 5676 0.386478 CGAAAACTGCTTGCAGCTCC 60.386 55.000 20.92 8.26 42.97 4.70
5116 5677 1.000736 GCGAAAACTGCTTGCAGCTC 61.001 55.000 20.92 14.03 42.97 4.09
5117 5678 1.008079 GCGAAAACTGCTTGCAGCT 60.008 52.632 20.92 7.60 42.97 4.24
5118 5679 1.273455 CTGCGAAAACTGCTTGCAGC 61.273 55.000 20.92 8.65 45.41 5.25
5119 5680 2.792374 CTGCGAAAACTGCTTGCAG 58.208 52.632 19.62 19.62 45.88 4.41
5120 5681 1.299316 GCTGCGAAAACTGCTTGCA 60.299 52.632 0.00 0.00 34.45 4.08
5121 5682 2.018324 GGCTGCGAAAACTGCTTGC 61.018 57.895 0.00 0.00 35.11 4.01
5122 5683 0.936297 GTGGCTGCGAAAACTGCTTG 60.936 55.000 0.00 0.00 35.11 4.01
5123 5684 1.360192 GTGGCTGCGAAAACTGCTT 59.640 52.632 0.00 0.00 35.11 3.91
5124 5685 1.174712 ATGTGGCTGCGAAAACTGCT 61.175 50.000 0.00 0.00 35.11 4.24
5125 5686 1.005294 CATGTGGCTGCGAAAACTGC 61.005 55.000 0.00 0.00 0.00 4.40
5126 5687 1.005294 GCATGTGGCTGCGAAAACTG 61.005 55.000 0.00 0.00 40.25 3.16
5127 5688 1.286880 GCATGTGGCTGCGAAAACT 59.713 52.632 0.00 0.00 40.25 2.66
5128 5689 1.007502 TGCATGTGGCTGCGAAAAC 60.008 52.632 0.00 0.00 45.30 2.43
5129 5690 1.007502 GTGCATGTGGCTGCGAAAA 60.008 52.632 0.00 0.00 45.30 2.29
5130 5691 0.605050 TAGTGCATGTGGCTGCGAAA 60.605 50.000 0.00 0.00 45.30 3.46
5131 5692 1.003959 TAGTGCATGTGGCTGCGAA 60.004 52.632 0.00 0.00 45.30 4.70
5132 5693 1.741401 GTAGTGCATGTGGCTGCGA 60.741 57.895 0.00 0.00 45.30 5.10
5133 5694 1.742880 AGTAGTGCATGTGGCTGCG 60.743 57.895 0.00 0.00 45.30 5.18
5134 5695 0.674581 TCAGTAGTGCATGTGGCTGC 60.675 55.000 0.00 0.00 45.15 5.25
5135 5696 1.669265 CATCAGTAGTGCATGTGGCTG 59.331 52.381 0.00 0.00 45.15 4.85
5136 5697 2.015588 GCATCAGTAGTGCATGTGGCT 61.016 52.381 0.00 0.00 45.15 4.75
5137 5698 0.379669 GCATCAGTAGTGCATGTGGC 59.620 55.000 0.00 0.00 42.08 5.01
5138 5699 1.741528 TGCATCAGTAGTGCATGTGG 58.258 50.000 0.00 0.00 46.76 4.17
5144 5705 1.869767 GCTGGTATGCATCAGTAGTGC 59.130 52.381 14.82 4.32 42.81 4.40
5211 5776 7.512130 TGGATCTATAGAATCATGTGCAAAGT 58.488 34.615 6.52 0.00 0.00 2.66
5404 5994 5.221126 GGAACTGCACAAACAAGAAGAGAAT 60.221 40.000 0.00 0.00 0.00 2.40
5433 6026 1.514003 TGTATGCGAAGAAAACGGCA 58.486 45.000 0.00 0.00 0.00 5.69
5496 6089 0.874390 GGTTCTGAGCAACGCATTCA 59.126 50.000 0.00 0.00 0.00 2.57
5508 6101 2.368875 GACCCTGTTCTTCTGGTTCTGA 59.631 50.000 0.00 0.00 33.97 3.27
5641 6234 5.567430 AGAGGAACAGGGGTAATAACAAAC 58.433 41.667 0.00 0.00 0.00 2.93
5722 6315 4.677832 CGTACAACTGCGCCTTTTATTTTT 59.322 37.500 4.18 0.00 0.00 1.94
5855 6451 8.677300 TCCATTTGATAATGCAGTAAAAGAGTC 58.323 33.333 0.00 0.00 39.87 3.36
5900 6498 2.893424 AGCCCAACAATTTCCATGTCT 58.107 42.857 0.00 0.00 0.00 3.41
5922 6520 8.301002 GCTTGGGAAAATACACAATAGTAAACA 58.699 33.333 0.00 0.00 32.59 2.83
5926 6527 6.727394 AGGCTTGGGAAAATACACAATAGTA 58.273 36.000 0.00 0.00 32.59 1.82
5974 6579 8.302515 AGACCTGCATTTTCATGATCTATTTT 57.697 30.769 0.00 0.00 31.07 1.82
5980 6585 4.811024 TCGTAGACCTGCATTTTCATGATC 59.189 41.667 0.00 0.00 31.07 2.92
5997 6602 9.387257 TGAAACTTACTATCACATACTCGTAGA 57.613 33.333 0.00 0.00 0.00 2.59
6001 6606 8.858003 ACATGAAACTTACTATCACATACTCG 57.142 34.615 0.00 0.00 0.00 4.18
6026 6631 9.811655 GCGTACGTACATCACTAAATTATAGTA 57.188 33.333 24.50 0.00 0.00 1.82
6027 6632 7.531871 CGCGTACGTACATCACTAAATTATAGT 59.468 37.037 24.50 0.00 33.53 2.12
6028 6633 7.858664 CGCGTACGTACATCACTAAATTATAG 58.141 38.462 24.50 4.40 33.53 1.31
6102 6826 0.590195 ATACGAGCGGATGTACGACC 59.410 55.000 0.00 0.00 35.47 4.79
6105 6833 2.115348 ACAATACGAGCGGATGTACG 57.885 50.000 0.00 0.00 0.00 3.67
6117 6845 1.072391 TGCGTGCACCTAACAATACG 58.928 50.000 12.15 0.00 34.93 3.06
6122 6853 0.533978 ATGTGTGCGTGCACCTAACA 60.534 50.000 21.19 18.28 45.63 2.41
6131 6865 0.658244 GTTGTGCTGATGTGTGCGTG 60.658 55.000 0.00 0.00 0.00 5.34
6138 6872 2.317609 GCGTCCGTTGTGCTGATGT 61.318 57.895 0.00 0.00 0.00 3.06
6286 7023 2.840753 GGAGGGGTTCAAGTGGGCA 61.841 63.158 0.00 0.00 0.00 5.36
6350 7087 3.429141 GACGGCGACAGAGACGGA 61.429 66.667 16.62 0.00 0.00 4.69
6351 7088 3.384014 GAGACGGCGACAGAGACGG 62.384 68.421 16.62 0.00 0.00 4.79
6352 7089 1.983196 ATGAGACGGCGACAGAGACG 61.983 60.000 16.62 0.00 0.00 4.18
6353 7090 1.015109 TATGAGACGGCGACAGAGAC 58.985 55.000 16.62 0.00 0.00 3.36
6354 7091 1.015109 GTATGAGACGGCGACAGAGA 58.985 55.000 16.62 0.00 0.00 3.10
6355 7092 1.003331 GAGTATGAGACGGCGACAGAG 60.003 57.143 16.62 0.00 0.00 3.35
6356 7093 1.015109 GAGTATGAGACGGCGACAGA 58.985 55.000 16.62 5.27 0.00 3.41
6357 7094 0.733150 TGAGTATGAGACGGCGACAG 59.267 55.000 16.62 0.00 0.00 3.51
6358 7095 1.132453 CTTGAGTATGAGACGGCGACA 59.868 52.381 16.62 11.31 0.00 4.35
6359 7096 1.828832 CTTGAGTATGAGACGGCGAC 58.171 55.000 16.62 7.87 0.00 5.19
6360 7097 0.100682 GCTTGAGTATGAGACGGCGA 59.899 55.000 16.62 0.00 0.00 5.54
6361 7098 0.101399 AGCTTGAGTATGAGACGGCG 59.899 55.000 4.80 4.80 0.00 6.46
6366 7103 4.774726 ACAAGGAGAAGCTTGAGTATGAGA 59.225 41.667 2.10 0.00 34.88 3.27
6398 7135 2.240667 AGGTGGTGAAAGGAGATGATGG 59.759 50.000 0.00 0.00 0.00 3.51
6679 7488 0.403271 AGGTGTTTCAGCTGCCATCT 59.597 50.000 9.47 8.28 40.87 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.