Multiple sequence alignment - TraesCS3D01G213000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G213000 chr3D 100.000 5458 0 0 1 5458 286875281 286880738 0.000000e+00 10080.0
1 TraesCS3D01G213000 chr3A 95.090 3218 66 28 227 3422 375768346 375771493 0.000000e+00 4983.0
2 TraesCS3D01G213000 chr3A 95.155 1321 36 9 3421 4719 375771569 375772883 0.000000e+00 2060.0
3 TraesCS3D01G213000 chr3A 91.351 370 19 9 4794 5151 375772881 375773249 1.370000e-135 494.0
4 TraesCS3D01G213000 chr3A 100.000 31 0 0 5178 5208 732225705 732225675 2.120000e-04 58.4
5 TraesCS3D01G213000 chr3B 93.205 1869 62 27 227 2069 379679001 379680830 0.000000e+00 2687.0
6 TraesCS3D01G213000 chr3B 98.385 867 9 2 2050 2916 379680844 379681705 0.000000e+00 1519.0
7 TraesCS3D01G213000 chr3B 95.063 871 32 6 3942 4806 379682525 379683390 0.000000e+00 1360.0
8 TraesCS3D01G213000 chr3B 94.153 496 14 2 3449 3929 379681973 379682468 0.000000e+00 741.0
9 TraesCS3D01G213000 chr3B 94.255 470 24 2 4741 5208 379683389 379683857 0.000000e+00 715.0
10 TraesCS3D01G213000 chr3B 94.306 281 8 3 2974 3252 379681703 379681977 1.820000e-114 424.0
11 TraesCS3D01G213000 chr3B 100.000 31 0 0 5178 5208 809770670 809770700 2.120000e-04 58.4
12 TraesCS3D01G213000 chr7D 92.391 184 13 1 1 183 115164194 115164377 1.510000e-65 261.0
13 TraesCS3D01G213000 chr7D 90.217 184 17 1 1 183 589245706 589245889 7.070000e-59 239.0
14 TraesCS3D01G213000 chr7D 96.296 54 1 1 174 227 115164515 115164567 2.710000e-13 87.9
15 TraesCS3D01G213000 chr7D 98.039 51 0 1 174 223 589260043 589260093 2.710000e-13 87.9
16 TraesCS3D01G213000 chr4B 91.304 184 15 1 1 183 17842893 17843076 3.260000e-62 250.0
17 TraesCS3D01G213000 chr4B 94.444 54 2 1 174 227 17843214 17843266 1.260000e-11 82.4
18 TraesCS3D01G213000 chr1D 87.500 184 22 1 1 183 433113243 433113426 1.540000e-50 211.0
19 TraesCS3D01G213000 chr1D 96.364 55 1 1 174 228 433113564 433113617 7.530000e-14 89.8
20 TraesCS3D01G213000 chr1D 100.000 28 0 0 5181 5208 196079875 196079848 1.000000e-02 52.8
21 TraesCS3D01G213000 chr6B 98.246 57 1 0 4829 4885 532385217 532385273 3.480000e-17 100.0
22 TraesCS3D01G213000 chr6B 94.444 54 2 1 174 227 694945184 694945236 1.260000e-11 82.4
23 TraesCS3D01G213000 chr2D 96.296 54 1 1 174 227 1657558 1657506 2.710000e-13 87.9
24 TraesCS3D01G213000 chr2D 80.723 83 13 3 13 94 78412358 78412278 1.640000e-05 62.1
25 TraesCS3D01G213000 chr4D 87.671 73 6 3 4833 4902 138695867 138695795 1.260000e-11 82.4
26 TraesCS3D01G213000 chr4A 92.727 55 3 1 4833 4886 415884370 415884424 1.630000e-10 78.7
27 TraesCS3D01G213000 chr1B 80.198 101 15 5 5216 5315 382688943 382688847 2.730000e-08 71.3
28 TraesCS3D01G213000 chr1B 94.118 34 2 0 5175 5208 269223201 269223234 1.000000e-02 52.8
29 TraesCS3D01G213000 chr5D 85.938 64 9 0 1 64 51249312 51249375 9.810000e-08 69.4
30 TraesCS3D01G213000 chr5D 85.938 64 9 0 1 64 51325875 51325938 9.810000e-08 69.4
31 TraesCS3D01G213000 chr5D 88.462 52 6 0 13 64 515044314 515044263 4.560000e-06 63.9
32 TraesCS3D01G213000 chr2B 80.723 83 14 2 13 94 121378375 121378294 4.560000e-06 63.9
33 TraesCS3D01G213000 chr1A 100.000 30 0 0 5394 5423 73995301 73995272 7.640000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G213000 chr3D 286875281 286880738 5457 False 10080.000000 10080 100.000000 1 5458 1 chr3D.!!$F1 5457
1 TraesCS3D01G213000 chr3A 375768346 375773249 4903 False 2512.333333 4983 93.865333 227 5151 3 chr3A.!!$F1 4924
2 TraesCS3D01G213000 chr3B 379679001 379683857 4856 False 1241.000000 2687 94.894500 227 5208 6 chr3B.!!$F2 4981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.173481 TCTGGTTCGCGAGATCAAGG 59.827 55.0 9.59 0.0 41.60 3.61 F
173 174 0.173708 GGTTCGCGAGATCAAGGAGT 59.826 55.0 9.59 0.0 41.60 3.85 F
839 863 0.174389 CGAGGATGTGAGAGTGGGTG 59.826 60.0 0.00 0.0 0.00 4.61 F
844 868 0.603707 ATGTGAGAGTGGGTGTTGCG 60.604 55.0 0.00 0.0 0.00 4.85 F
1335 1379 0.747644 CAATGCCGCCATCACCACTA 60.748 55.0 0.00 0.0 0.00 2.74 F
2866 2956 1.202330 AGCTCAGGGATGAGGAGTTG 58.798 55.0 7.33 0.0 36.49 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 1904 0.815615 GGCCGGTAGCAGAATCCAAG 60.816 60.000 1.90 0.00 46.50 3.61 R
2171 2261 7.015682 AGAGAGACGTATGGAATATGGAATGTT 59.984 37.037 0.00 0.00 40.15 2.71 R
2461 2551 3.937814 TGCATTTCGGTGAACATAGACT 58.062 40.909 0.00 0.00 0.00 3.24 R
2866 2956 7.095017 GCAGCTAATTCAATAACCTGAGGATAC 60.095 40.741 4.99 0.00 0.00 2.24 R
3156 3249 1.333619 CAACATAAGTGCCGGCCATAC 59.666 52.381 26.77 16.33 0.00 2.39 R
4708 4946 0.036577 CCTCTCAGTCCTTGTGGCAG 60.037 60.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.008539 GCTCTGAAAGCCGAATTACAAG 57.991 45.455 0.00 0.00 45.92 3.16
27 28 3.729163 GCTCTGAAAGCCGAATTACAAGC 60.729 47.826 0.00 0.00 45.92 4.01
28 29 2.415168 TCTGAAAGCCGAATTACAAGCG 59.585 45.455 0.00 0.00 0.00 4.68
29 30 2.415168 CTGAAAGCCGAATTACAAGCGA 59.585 45.455 0.00 0.00 0.00 4.93
30 31 3.006940 TGAAAGCCGAATTACAAGCGAT 58.993 40.909 0.00 0.00 0.00 4.58
31 32 4.185394 TGAAAGCCGAATTACAAGCGATA 58.815 39.130 0.00 0.00 0.00 2.92
32 33 4.632251 TGAAAGCCGAATTACAAGCGATAA 59.368 37.500 0.00 0.00 0.00 1.75
33 34 5.295787 TGAAAGCCGAATTACAAGCGATAAT 59.704 36.000 0.00 0.00 0.00 1.28
34 35 4.732285 AGCCGAATTACAAGCGATAATG 57.268 40.909 0.00 0.00 0.00 1.90
35 36 3.058914 AGCCGAATTACAAGCGATAATGC 60.059 43.478 0.00 0.00 0.00 3.56
36 37 3.303725 GCCGAATTACAAGCGATAATGCA 60.304 43.478 0.00 0.00 37.31 3.96
37 38 4.788201 GCCGAATTACAAGCGATAATGCAA 60.788 41.667 0.00 0.00 37.31 4.08
38 39 4.905866 CCGAATTACAAGCGATAATGCAAG 59.094 41.667 0.00 0.00 37.31 4.01
39 40 4.905866 CGAATTACAAGCGATAATGCAAGG 59.094 41.667 0.00 0.00 37.31 3.61
40 41 3.691049 TTACAAGCGATAATGCAAGGC 57.309 42.857 0.00 0.00 37.31 4.35
41 42 1.462616 ACAAGCGATAATGCAAGGCA 58.537 45.000 0.00 0.00 44.86 4.75
50 51 3.061752 TGCAAGGCATGGCTTTGG 58.938 55.556 30.20 21.02 44.07 3.28
51 52 2.435410 GCAAGGCATGGCTTTGGC 60.435 61.111 30.20 26.08 44.07 4.52
67 68 3.448093 TTGGCCATCCAACATTCTACA 57.552 42.857 6.09 0.00 46.89 2.74
68 69 2.722094 TGGCCATCCAACATTCTACAC 58.278 47.619 0.00 0.00 39.99 2.90
69 70 2.308570 TGGCCATCCAACATTCTACACT 59.691 45.455 0.00 0.00 39.99 3.55
70 71 3.245229 TGGCCATCCAACATTCTACACTT 60.245 43.478 0.00 0.00 39.99 3.16
71 72 3.378427 GGCCATCCAACATTCTACACTTC 59.622 47.826 0.00 0.00 0.00 3.01
72 73 4.009675 GCCATCCAACATTCTACACTTCA 58.990 43.478 0.00 0.00 0.00 3.02
73 74 4.458989 GCCATCCAACATTCTACACTTCAA 59.541 41.667 0.00 0.00 0.00 2.69
74 75 5.392380 GCCATCCAACATTCTACACTTCAAG 60.392 44.000 0.00 0.00 0.00 3.02
75 76 5.707298 CCATCCAACATTCTACACTTCAAGT 59.293 40.000 0.00 0.00 0.00 3.16
86 87 2.821546 CACTTCAAGTGGTCGTTCAGA 58.178 47.619 9.96 0.00 42.35 3.27
96 97 2.952245 CGTTCAGACGGACTCGGT 59.048 61.111 0.00 0.00 45.32 4.69
97 98 1.442184 CGTTCAGACGGACTCGGTG 60.442 63.158 0.00 0.00 45.32 4.94
98 99 1.080705 GTTCAGACGGACTCGGTGG 60.081 63.158 0.00 0.00 41.39 4.61
99 100 1.228337 TTCAGACGGACTCGGTGGA 60.228 57.895 0.00 0.00 41.39 4.02
100 101 0.824595 TTCAGACGGACTCGGTGGAA 60.825 55.000 0.00 0.00 41.39 3.53
101 102 1.213013 CAGACGGACTCGGTGGAAG 59.787 63.158 0.00 0.00 41.39 3.46
102 103 2.126031 GACGGACTCGGTGGAAGC 60.126 66.667 0.00 0.00 41.39 3.86
111 112 3.882025 GGTGGAAGCGCTCTCAAG 58.118 61.111 12.06 0.00 0.00 3.02
112 113 1.004440 GGTGGAAGCGCTCTCAAGT 60.004 57.895 12.06 0.00 0.00 3.16
113 114 0.603975 GGTGGAAGCGCTCTCAAGTT 60.604 55.000 12.06 0.00 0.00 2.66
114 115 1.230324 GTGGAAGCGCTCTCAAGTTT 58.770 50.000 12.06 0.00 0.00 2.66
115 116 1.069636 GTGGAAGCGCTCTCAAGTTTG 60.070 52.381 12.06 0.00 0.00 2.93
116 117 1.230324 GGAAGCGCTCTCAAGTTTGT 58.770 50.000 12.06 0.00 0.00 2.83
117 118 1.604278 GGAAGCGCTCTCAAGTTTGTT 59.396 47.619 12.06 0.00 0.00 2.83
118 119 2.603173 GGAAGCGCTCTCAAGTTTGTTG 60.603 50.000 12.06 0.00 0.00 3.33
119 120 1.953559 AGCGCTCTCAAGTTTGTTGA 58.046 45.000 2.64 0.00 0.00 3.18
120 121 1.869767 AGCGCTCTCAAGTTTGTTGAG 59.130 47.619 2.64 8.22 45.38 3.02
121 122 1.661460 GCGCTCTCAAGTTTGTTGAGC 60.661 52.381 20.95 20.95 44.08 4.26
122 123 1.599071 CGCTCTCAAGTTTGTTGAGCA 59.401 47.619 25.50 8.80 45.82 4.26
123 124 2.032054 CGCTCTCAAGTTTGTTGAGCAA 59.968 45.455 25.50 5.52 45.82 3.91
124 125 3.625938 GCTCTCAAGTTTGTTGAGCAAG 58.374 45.455 23.46 4.92 45.38 4.01
125 126 3.549625 GCTCTCAAGTTTGTTGAGCAAGG 60.550 47.826 23.46 2.61 45.38 3.61
126 127 2.951642 TCTCAAGTTTGTTGAGCAAGGG 59.048 45.455 9.46 0.00 44.08 3.95
127 128 2.951642 CTCAAGTTTGTTGAGCAAGGGA 59.048 45.455 1.99 0.00 39.36 4.20
128 129 2.687935 TCAAGTTTGTTGAGCAAGGGAC 59.312 45.455 0.00 0.00 38.47 4.46
129 130 5.463504 CTCAAGTTTGTTGAGCAAGGGACT 61.464 45.833 1.99 0.00 39.19 3.85
130 131 2.301346 AGTTTGTTGAGCAAGGGACTG 58.699 47.619 0.00 0.00 40.86 3.51
131 132 1.338020 GTTTGTTGAGCAAGGGACTGG 59.662 52.381 0.00 0.00 40.86 4.00
132 133 0.843309 TTGTTGAGCAAGGGACTGGA 59.157 50.000 0.00 0.00 40.86 3.86
133 134 0.397941 TGTTGAGCAAGGGACTGGAG 59.602 55.000 0.00 0.00 40.86 3.86
134 135 0.957888 GTTGAGCAAGGGACTGGAGC 60.958 60.000 0.00 0.00 40.86 4.70
135 136 2.125350 GAGCAAGGGACTGGAGCG 60.125 66.667 0.00 0.00 40.86 5.03
136 137 2.925170 AGCAAGGGACTGGAGCGT 60.925 61.111 0.00 0.00 40.86 5.07
137 138 2.032681 GCAAGGGACTGGAGCGTT 59.967 61.111 0.00 0.00 40.86 4.84
138 139 2.035442 GCAAGGGACTGGAGCGTTC 61.035 63.158 0.00 0.00 40.86 3.95
139 140 1.738099 CAAGGGACTGGAGCGTTCG 60.738 63.158 0.00 0.00 40.86 3.95
140 141 2.943978 AAGGGACTGGAGCGTTCGG 61.944 63.158 0.00 0.00 40.86 4.30
151 152 2.587753 CGTTCGGCGTATGGGCAT 60.588 61.111 6.85 0.00 42.43 4.40
152 153 2.594962 CGTTCGGCGTATGGGCATC 61.595 63.158 6.85 0.00 42.43 3.91
153 154 1.227556 GTTCGGCGTATGGGCATCT 60.228 57.895 6.85 0.00 42.43 2.90
154 155 1.227527 TTCGGCGTATGGGCATCTG 60.228 57.895 6.85 0.00 42.43 2.90
155 156 2.658679 TTCGGCGTATGGGCATCTGG 62.659 60.000 6.85 0.00 42.43 3.86
156 157 2.510906 GGCGTATGGGCATCTGGT 59.489 61.111 0.00 0.00 41.77 4.00
157 158 1.152963 GGCGTATGGGCATCTGGTT 60.153 57.895 0.00 0.00 41.77 3.67
158 159 1.166531 GGCGTATGGGCATCTGGTTC 61.167 60.000 0.00 0.00 41.77 3.62
159 160 1.498865 GCGTATGGGCATCTGGTTCG 61.499 60.000 0.00 0.00 0.00 3.95
160 161 1.498865 CGTATGGGCATCTGGTTCGC 61.499 60.000 0.00 0.00 0.00 4.70
161 162 1.227527 TATGGGCATCTGGTTCGCG 60.228 57.895 0.00 0.00 0.00 5.87
162 163 1.681486 TATGGGCATCTGGTTCGCGA 61.681 55.000 3.71 3.71 0.00 5.87
163 164 2.892425 GGGCATCTGGTTCGCGAG 60.892 66.667 9.59 0.00 0.00 5.03
164 165 2.184322 GGCATCTGGTTCGCGAGA 59.816 61.111 9.59 3.08 36.42 4.04
165 166 1.227380 GGCATCTGGTTCGCGAGAT 60.227 57.895 9.59 5.76 42.27 2.75
166 167 1.218230 GGCATCTGGTTCGCGAGATC 61.218 60.000 9.59 4.13 40.06 2.75
167 168 0.528466 GCATCTGGTTCGCGAGATCA 60.528 55.000 9.59 8.37 40.06 2.92
168 169 1.926561 CATCTGGTTCGCGAGATCAA 58.073 50.000 9.59 0.00 40.06 2.57
169 170 1.857217 CATCTGGTTCGCGAGATCAAG 59.143 52.381 9.59 7.46 40.06 3.02
170 171 0.173481 TCTGGTTCGCGAGATCAAGG 59.827 55.000 9.59 0.00 41.60 3.61
171 172 0.173481 CTGGTTCGCGAGATCAAGGA 59.827 55.000 9.59 0.00 41.60 3.36
172 173 0.173481 TGGTTCGCGAGATCAAGGAG 59.827 55.000 9.59 0.00 41.60 3.69
173 174 0.173708 GGTTCGCGAGATCAAGGAGT 59.826 55.000 9.59 0.00 41.60 3.85
174 175 1.404315 GGTTCGCGAGATCAAGGAGTT 60.404 52.381 9.59 0.00 41.60 3.01
175 176 1.656095 GTTCGCGAGATCAAGGAGTTG 59.344 52.381 9.59 0.00 41.60 3.16
176 177 1.173913 TCGCGAGATCAAGGAGTTGA 58.826 50.000 3.71 0.00 46.81 3.18
193 194 9.614792 AAGGAGTTGATTGTAACACTATTATCC 57.385 33.333 0.00 0.00 33.02 2.59
194 195 8.768397 AGGAGTTGATTGTAACACTATTATCCA 58.232 33.333 0.00 0.00 33.02 3.41
195 196 9.046296 GGAGTTGATTGTAACACTATTATCCAG 57.954 37.037 0.00 0.00 33.02 3.86
196 197 9.601217 GAGTTGATTGTAACACTATTATCCAGT 57.399 33.333 0.00 0.00 33.02 4.00
214 215 9.910267 TTATCCAGTAATAAAACTCCTTTACCC 57.090 33.333 0.00 0.00 32.26 3.69
215 216 6.724351 TCCAGTAATAAAACTCCTTTACCCC 58.276 40.000 0.00 0.00 32.26 4.95
216 217 5.587443 CCAGTAATAAAACTCCTTTACCCCG 59.413 44.000 0.00 0.00 32.26 5.73
217 218 6.408869 CAGTAATAAAACTCCTTTACCCCGA 58.591 40.000 0.00 0.00 32.26 5.14
218 219 6.880529 CAGTAATAAAACTCCTTTACCCCGAA 59.119 38.462 0.00 0.00 32.26 4.30
219 220 7.391275 CAGTAATAAAACTCCTTTACCCCGAAA 59.609 37.037 0.00 0.00 32.26 3.46
220 221 7.944000 AGTAATAAAACTCCTTTACCCCGAAAA 59.056 33.333 0.00 0.00 32.26 2.29
221 222 7.600231 AATAAAACTCCTTTACCCCGAAAAA 57.400 32.000 0.00 0.00 32.26 1.94
254 255 2.505557 CGGCGTGGACCTAACGAC 60.506 66.667 8.46 4.37 45.71 4.34
476 480 1.000486 GCTTTCCCCTTTCCCCTCC 60.000 63.158 0.00 0.00 0.00 4.30
724 743 2.833631 ATCGGGGCTATTCTTTACGG 57.166 50.000 0.00 0.00 0.00 4.02
741 760 8.168790 TCTTTACGGGTATTATTATTTTGCCC 57.831 34.615 0.00 0.00 0.00 5.36
782 801 4.785301 TCTTGATGTTTGGATCATCCCTC 58.215 43.478 0.00 0.00 40.38 4.30
815 834 1.551452 ACTGATATAGGAGCGGGCTC 58.449 55.000 12.17 12.17 42.04 4.70
834 858 1.102154 CTCTGCGAGGATGTGAGAGT 58.898 55.000 0.00 0.00 0.00 3.24
835 859 0.813821 TCTGCGAGGATGTGAGAGTG 59.186 55.000 0.00 0.00 0.00 3.51
836 860 0.179116 CTGCGAGGATGTGAGAGTGG 60.179 60.000 0.00 0.00 0.00 4.00
837 861 1.142748 GCGAGGATGTGAGAGTGGG 59.857 63.158 0.00 0.00 0.00 4.61
838 862 1.608717 GCGAGGATGTGAGAGTGGGT 61.609 60.000 0.00 0.00 0.00 4.51
839 863 0.174389 CGAGGATGTGAGAGTGGGTG 59.826 60.000 0.00 0.00 0.00 4.61
840 864 1.270907 GAGGATGTGAGAGTGGGTGT 58.729 55.000 0.00 0.00 0.00 4.16
841 865 1.625818 GAGGATGTGAGAGTGGGTGTT 59.374 52.381 0.00 0.00 0.00 3.32
842 866 1.349026 AGGATGTGAGAGTGGGTGTTG 59.651 52.381 0.00 0.00 0.00 3.33
843 867 1.160137 GATGTGAGAGTGGGTGTTGC 58.840 55.000 0.00 0.00 0.00 4.17
844 868 0.603707 ATGTGAGAGTGGGTGTTGCG 60.604 55.000 0.00 0.00 0.00 4.85
845 869 1.961277 GTGAGAGTGGGTGTTGCGG 60.961 63.158 0.00 0.00 0.00 5.69
846 870 2.137528 TGAGAGTGGGTGTTGCGGA 61.138 57.895 0.00 0.00 0.00 5.54
847 871 1.374758 GAGAGTGGGTGTTGCGGAG 60.375 63.158 0.00 0.00 0.00 4.63
848 872 1.816863 GAGAGTGGGTGTTGCGGAGA 61.817 60.000 0.00 0.00 0.00 3.71
849 873 1.070786 GAGTGGGTGTTGCGGAGAA 59.929 57.895 0.00 0.00 0.00 2.87
850 874 0.951040 GAGTGGGTGTTGCGGAGAAG 60.951 60.000 0.00 0.00 0.00 2.85
851 875 1.966451 GTGGGTGTTGCGGAGAAGG 60.966 63.158 0.00 0.00 0.00 3.46
852 876 2.144078 TGGGTGTTGCGGAGAAGGA 61.144 57.895 0.00 0.00 0.00 3.36
853 877 1.376037 GGGTGTTGCGGAGAAGGAG 60.376 63.158 0.00 0.00 0.00 3.69
854 878 2.035442 GGTGTTGCGGAGAAGGAGC 61.035 63.158 0.00 0.00 0.00 4.70
855 879 2.048222 TGTTGCGGAGAAGGAGCG 60.048 61.111 0.00 0.00 0.00 5.03
856 880 2.261671 GTTGCGGAGAAGGAGCGA 59.738 61.111 0.00 0.00 0.00 4.93
886 918 2.163818 TGTTTCGGTGGAGTTGCTAG 57.836 50.000 0.00 0.00 0.00 3.42
887 919 1.270625 TGTTTCGGTGGAGTTGCTAGG 60.271 52.381 0.00 0.00 0.00 3.02
888 920 1.001633 GTTTCGGTGGAGTTGCTAGGA 59.998 52.381 0.00 0.00 0.00 2.94
889 921 1.344065 TTCGGTGGAGTTGCTAGGAA 58.656 50.000 0.00 0.00 0.00 3.36
890 922 1.568504 TCGGTGGAGTTGCTAGGAAT 58.431 50.000 0.00 0.00 0.00 3.01
891 923 1.480954 TCGGTGGAGTTGCTAGGAATC 59.519 52.381 0.00 0.00 0.00 2.52
892 924 1.207089 CGGTGGAGTTGCTAGGAATCA 59.793 52.381 0.00 0.00 0.00 2.57
893 925 2.354704 CGGTGGAGTTGCTAGGAATCAA 60.355 50.000 0.00 0.00 0.00 2.57
987 1019 2.537401 GCAATCTGCATTCTTCAAGGC 58.463 47.619 0.00 0.00 44.26 4.35
1123 1155 0.902531 AGCCGCACACATTACCTACT 59.097 50.000 0.00 0.00 0.00 2.57
1202 1234 0.757561 TCGTCACACCAGTCCCTTCA 60.758 55.000 0.00 0.00 0.00 3.02
1335 1379 0.747644 CAATGCCGCCATCACCACTA 60.748 55.000 0.00 0.00 0.00 2.74
1575 1619 3.244422 ACGATAAAGAAGTGGCCTCACAA 60.244 43.478 3.32 0.00 45.91 3.33
1860 1904 5.978814 AGTGGGACTGATGTTGTTATACTC 58.021 41.667 0.00 0.00 0.00 2.59
2000 2044 5.593679 AGTTAAACTCTAGCCTATTCGCA 57.406 39.130 0.00 0.00 0.00 5.10
2001 2045 5.974108 AGTTAAACTCTAGCCTATTCGCAA 58.026 37.500 0.00 0.00 0.00 4.85
2042 2092 6.666980 ACTCTAGCCTCTTATGATGCATATGA 59.333 38.462 6.97 0.00 36.49 2.15
2171 2261 6.781014 AGGAGTACTATATTTCGGGATCAACA 59.219 38.462 0.00 0.00 0.00 3.33
2332 2422 4.820897 TCAAGTCTGTACATGCTAACAGG 58.179 43.478 18.23 7.12 42.72 4.00
2866 2956 1.202330 AGCTCAGGGATGAGGAGTTG 58.798 55.000 7.33 0.00 36.49 3.16
2932 3022 5.290493 TCCGTGAACTAGCATATCCAATT 57.710 39.130 0.00 0.00 0.00 2.32
2933 3023 6.413783 TCCGTGAACTAGCATATCCAATTA 57.586 37.500 0.00 0.00 0.00 1.40
2934 3024 6.455647 TCCGTGAACTAGCATATCCAATTAG 58.544 40.000 0.00 0.00 0.00 1.73
2935 3025 6.041637 TCCGTGAACTAGCATATCCAATTAGT 59.958 38.462 0.00 0.00 0.00 2.24
2937 3027 7.307396 CCGTGAACTAGCATATCCAATTAGTTG 60.307 40.741 0.43 0.00 35.39 3.16
2979 3070 2.700722 TCACGCTATTTATGTGGGCA 57.299 45.000 0.00 0.00 34.43 5.36
3055 3146 9.965824 CTGTTTATCACATTTCCTTGTTACTTT 57.034 29.630 0.00 0.00 33.76 2.66
3112 3205 4.593634 GGGGGACACAAGTATAGCTCTTAT 59.406 45.833 0.00 0.00 0.00 1.73
3156 3249 4.785301 TGGAGCTCTATTTTCATTCAGGG 58.215 43.478 14.64 0.00 0.00 4.45
3237 3330 3.107104 CTGTTGTTGTGGCGCGTGT 62.107 57.895 8.43 0.00 0.00 4.49
3327 3420 3.055094 TGTTAATTCTGCAGGTCTCCCTC 60.055 47.826 15.13 0.00 39.89 4.30
3343 3436 1.482593 CCCTCGTGACTGCTATTTCCT 59.517 52.381 0.00 0.00 0.00 3.36
3350 3443 2.301870 TGACTGCTATTTCCTTGTCGGT 59.698 45.455 0.00 0.00 0.00 4.69
3366 3459 3.132289 TGTCGGTTTTCTCTTCTGACACT 59.868 43.478 0.00 0.00 40.87 3.55
3367 3460 4.120589 GTCGGTTTTCTCTTCTGACACTT 58.879 43.478 0.00 0.00 37.41 3.16
3397 3490 1.533731 CGTTTCTGTTTATGTGGGCGT 59.466 47.619 0.00 0.00 0.00 5.68
3416 3509 3.318017 CGTGGTCTCTGTTTTCGATTCT 58.682 45.455 0.00 0.00 0.00 2.40
3446 3616 6.964807 ATAGCAATGCTTATTTCCATGTCA 57.035 33.333 14.85 0.00 40.44 3.58
3450 3620 5.870978 GCAATGCTTATTTCCATGTCAGTTT 59.129 36.000 0.00 0.00 0.00 2.66
3469 3639 6.757010 TCAGTTTTCTCTTCTGACACACTTAC 59.243 38.462 0.00 0.00 34.00 2.34
3721 3891 2.403252 ACGAATGGATTGGACTCACC 57.597 50.000 0.00 0.00 39.54 4.02
3742 3912 2.483106 CGATTGCCTGCCTGATAATGAG 59.517 50.000 0.00 0.00 0.00 2.90
3796 3966 0.904865 TCTGTGGGGAACTCGAGCAT 60.905 55.000 13.61 0.73 0.00 3.79
3889 4074 0.248702 CGGGTGGTTTTGGTTGAACG 60.249 55.000 0.00 0.00 0.00 3.95
3896 4081 3.040099 GGTTTTGGTTGAACGTTCATCG 58.960 45.455 30.10 0.00 46.00 3.84
4152 4381 0.520404 AAACGCAATGCAGAGCTCAG 59.480 50.000 17.77 9.50 0.00 3.35
4153 4382 0.321034 AACGCAATGCAGAGCTCAGA 60.321 50.000 17.77 0.00 0.00 3.27
4167 4396 2.099652 CTCAGACCAGGGTTCGCACA 62.100 60.000 0.00 0.00 0.00 4.57
4184 4413 1.067283 CACACCAGGAGCTACTCAGTG 60.067 57.143 19.81 19.81 35.31 3.66
4307 4536 0.457851 ATCTTCAGACGAGCCTTCCG 59.542 55.000 0.00 0.00 0.00 4.30
4343 4572 0.406750 TGACGGGGTTCTCAGGAGTA 59.593 55.000 0.00 0.00 0.00 2.59
4364 4593 2.542907 CGTGCAGGCGTTTGAAGGT 61.543 57.895 0.00 0.00 0.00 3.50
4407 4639 2.823147 CTGCTGCTGCTAGCCACC 60.823 66.667 13.29 0.57 41.51 4.61
4493 4725 0.539986 AGCCGGTTCCACGTGAATAT 59.460 50.000 19.30 0.00 34.90 1.28
4642 4878 2.821969 AGTACTTTTTCTGCTGCATGGG 59.178 45.455 1.31 0.00 0.00 4.00
4704 4942 7.173735 TCTCACGTCTTCACACTGTTATACTTA 59.826 37.037 0.00 0.00 0.00 2.24
4705 4943 7.650890 TCACGTCTTCACACTGTTATACTTAA 58.349 34.615 0.00 0.00 0.00 1.85
4706 4944 7.592533 TCACGTCTTCACACTGTTATACTTAAC 59.407 37.037 0.00 0.00 38.56 2.01
4708 4946 7.380602 ACGTCTTCACACTGTTATACTTAACAC 59.619 37.037 0.00 0.00 42.10 3.32
4950 5252 7.441836 ACGGCAGAATCATTACAAGATATACA 58.558 34.615 0.00 0.00 0.00 2.29
4995 5307 7.492524 AGATTATGTTCGAGTATGAGAAGCAA 58.507 34.615 0.00 0.00 0.00 3.91
5013 5325 3.322828 AGCAATGATCTGGTGCTTTGTTT 59.677 39.130 11.17 0.00 46.25 2.83
5056 5368 4.594920 TCATACTCAGATTCAATCCCTCCC 59.405 45.833 0.00 0.00 0.00 4.30
5061 5373 5.206587 CTCAGATTCAATCCCTCCCATTTT 58.793 41.667 0.00 0.00 0.00 1.82
5127 5441 9.384764 CTATCTAGATATTCGTCACATGGTAGA 57.615 37.037 12.86 0.00 0.00 2.59
5186 5500 8.588290 TTAATATACTGCCATCTTGGTGTTTT 57.412 30.769 0.00 0.00 40.46 2.43
5208 5522 4.282496 TGACCCTTTTGGCAAAGTTTAGA 58.718 39.130 13.04 0.00 38.22 2.10
5209 5523 4.898861 TGACCCTTTTGGCAAAGTTTAGAT 59.101 37.500 13.04 0.02 38.22 1.98
5210 5524 5.010617 TGACCCTTTTGGCAAAGTTTAGATC 59.989 40.000 13.04 9.02 38.22 2.75
5211 5525 4.283467 ACCCTTTTGGCAAAGTTTAGATCC 59.717 41.667 13.04 0.00 38.22 3.36
5212 5526 4.528206 CCCTTTTGGCAAAGTTTAGATCCT 59.472 41.667 13.04 0.00 38.22 3.24
5213 5527 5.473039 CCTTTTGGCAAAGTTTAGATCCTG 58.527 41.667 13.04 0.00 38.22 3.86
5214 5528 5.467035 TTTTGGCAAAGTTTAGATCCTGG 57.533 39.130 13.04 0.00 0.00 4.45
5215 5529 3.806949 TGGCAAAGTTTAGATCCTGGT 57.193 42.857 0.00 0.00 0.00 4.00
5216 5530 3.420893 TGGCAAAGTTTAGATCCTGGTG 58.579 45.455 0.00 0.00 0.00 4.17
5217 5531 3.181434 TGGCAAAGTTTAGATCCTGGTGT 60.181 43.478 0.00 0.00 0.00 4.16
5218 5532 3.826729 GGCAAAGTTTAGATCCTGGTGTT 59.173 43.478 0.00 0.00 0.00 3.32
5219 5533 4.280929 GGCAAAGTTTAGATCCTGGTGTTT 59.719 41.667 0.00 0.00 0.00 2.83
5220 5534 5.221441 GGCAAAGTTTAGATCCTGGTGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
5221 5535 5.691754 GCAAAGTTTAGATCCTGGTGTTTTG 59.308 40.000 0.00 0.00 0.00 2.44
5222 5536 6.460953 GCAAAGTTTAGATCCTGGTGTTTTGA 60.461 38.462 0.00 0.00 0.00 2.69
5223 5537 6.635030 AAGTTTAGATCCTGGTGTTTTGAC 57.365 37.500 0.00 0.00 0.00 3.18
5224 5538 5.070685 AGTTTAGATCCTGGTGTTTTGACC 58.929 41.667 0.00 0.00 36.43 4.02
5225 5539 2.586648 AGATCCTGGTGTTTTGACCC 57.413 50.000 0.00 0.00 34.79 4.46
5226 5540 2.065799 AGATCCTGGTGTTTTGACCCT 58.934 47.619 0.00 0.00 34.79 4.34
5227 5541 2.447047 AGATCCTGGTGTTTTGACCCTT 59.553 45.455 0.00 0.00 34.79 3.95
5228 5542 2.838637 TCCTGGTGTTTTGACCCTTT 57.161 45.000 0.00 0.00 34.79 3.11
5229 5543 2.661718 TCCTGGTGTTTTGACCCTTTC 58.338 47.619 0.00 0.00 34.79 2.62
5230 5544 1.336755 CCTGGTGTTTTGACCCTTTCG 59.663 52.381 0.00 0.00 34.79 3.46
5231 5545 1.336755 CTGGTGTTTTGACCCTTTCGG 59.663 52.381 0.00 0.00 34.79 4.30
5249 5563 2.591571 GGTAACGTTTAGCCGGATCT 57.408 50.000 5.05 0.00 0.00 2.75
5250 5564 2.199236 GGTAACGTTTAGCCGGATCTG 58.801 52.381 5.05 0.00 0.00 2.90
5251 5565 2.159198 GGTAACGTTTAGCCGGATCTGA 60.159 50.000 5.05 0.00 0.00 3.27
5252 5566 2.981859 AACGTTTAGCCGGATCTGAT 57.018 45.000 5.05 0.00 0.00 2.90
5253 5567 2.510768 ACGTTTAGCCGGATCTGATC 57.489 50.000 5.05 9.18 0.00 2.92
5254 5568 2.032620 ACGTTTAGCCGGATCTGATCT 58.967 47.619 16.61 2.38 0.00 2.75
5255 5569 2.034812 ACGTTTAGCCGGATCTGATCTC 59.965 50.000 16.61 6.80 0.00 2.75
5256 5570 2.608261 CGTTTAGCCGGATCTGATCTCC 60.608 54.545 16.61 2.51 0.00 3.71
5257 5571 1.633774 TTAGCCGGATCTGATCTCCC 58.366 55.000 16.61 0.96 0.00 4.30
5258 5572 0.780637 TAGCCGGATCTGATCTCCCT 59.219 55.000 16.61 11.94 0.00 4.20
5259 5573 0.105246 AGCCGGATCTGATCTCCCTT 60.105 55.000 16.61 0.00 0.00 3.95
5260 5574 0.761802 GCCGGATCTGATCTCCCTTT 59.238 55.000 16.61 0.00 0.00 3.11
5261 5575 1.542108 GCCGGATCTGATCTCCCTTTG 60.542 57.143 16.61 0.86 0.00 2.77
5262 5576 2.042464 CCGGATCTGATCTCCCTTTGA 58.958 52.381 16.61 0.00 0.00 2.69
5263 5577 2.435805 CCGGATCTGATCTCCCTTTGAA 59.564 50.000 16.61 0.00 0.00 2.69
5264 5578 3.118261 CCGGATCTGATCTCCCTTTGAAA 60.118 47.826 16.61 0.00 0.00 2.69
5265 5579 4.445448 CCGGATCTGATCTCCCTTTGAAAT 60.445 45.833 16.61 0.00 0.00 2.17
5266 5580 5.128919 CGGATCTGATCTCCCTTTGAAATT 58.871 41.667 16.61 0.00 0.00 1.82
5267 5581 5.008415 CGGATCTGATCTCCCTTTGAAATTG 59.992 44.000 16.61 0.00 0.00 2.32
5268 5582 5.890419 GGATCTGATCTCCCTTTGAAATTGT 59.110 40.000 16.61 0.00 0.00 2.71
5269 5583 6.379417 GGATCTGATCTCCCTTTGAAATTGTT 59.621 38.462 16.61 0.00 0.00 2.83
5270 5584 7.093596 GGATCTGATCTCCCTTTGAAATTGTTT 60.094 37.037 16.61 0.00 0.00 2.83
5271 5585 7.219484 TCTGATCTCCCTTTGAAATTGTTTC 57.781 36.000 0.00 0.00 40.08 2.78
5272 5586 6.012658 TGATCTCCCTTTGAAATTGTTTCG 57.987 37.500 0.00 0.00 42.55 3.46
5273 5587 5.767665 TGATCTCCCTTTGAAATTGTTTCGA 59.232 36.000 0.00 0.00 42.55 3.71
5274 5588 5.689383 TCTCCCTTTGAAATTGTTTCGAG 57.311 39.130 0.00 0.00 42.55 4.04
5275 5589 5.373222 TCTCCCTTTGAAATTGTTTCGAGA 58.627 37.500 7.01 5.56 42.55 4.04
5276 5590 6.003950 TCTCCCTTTGAAATTGTTTCGAGAT 58.996 36.000 7.01 0.00 42.55 2.75
5277 5591 6.149474 TCTCCCTTTGAAATTGTTTCGAGATC 59.851 38.462 7.01 0.00 42.55 2.75
5278 5592 5.088739 CCCTTTGAAATTGTTTCGAGATCG 58.911 41.667 0.00 0.00 42.55 3.69
5291 5605 4.252971 TCGAGATCGAACACTTTTTCCT 57.747 40.909 1.76 0.00 46.30 3.36
5292 5606 5.381174 TCGAGATCGAACACTTTTTCCTA 57.619 39.130 1.76 0.00 46.30 2.94
5293 5607 5.159209 TCGAGATCGAACACTTTTTCCTAC 58.841 41.667 1.76 0.00 46.30 3.18
5294 5608 4.326548 CGAGATCGAACACTTTTTCCTACC 59.673 45.833 0.00 0.00 43.02 3.18
5295 5609 4.243270 AGATCGAACACTTTTTCCTACCG 58.757 43.478 0.00 0.00 0.00 4.02
5296 5610 2.137523 TCGAACACTTTTTCCTACCGC 58.862 47.619 0.00 0.00 0.00 5.68
5297 5611 1.196127 CGAACACTTTTTCCTACCGCC 59.804 52.381 0.00 0.00 0.00 6.13
5298 5612 2.223745 GAACACTTTTTCCTACCGCCA 58.776 47.619 0.00 0.00 0.00 5.69
5299 5613 1.601166 ACACTTTTTCCTACCGCCAC 58.399 50.000 0.00 0.00 0.00 5.01
5300 5614 0.879090 CACTTTTTCCTACCGCCACC 59.121 55.000 0.00 0.00 0.00 4.61
5301 5615 0.251033 ACTTTTTCCTACCGCCACCC 60.251 55.000 0.00 0.00 0.00 4.61
5302 5616 1.302671 TTTTTCCTACCGCCACCCG 60.303 57.895 0.00 0.00 0.00 5.28
5303 5617 1.766625 TTTTTCCTACCGCCACCCGA 61.767 55.000 0.00 0.00 40.02 5.14
5304 5618 2.453379 TTTTCCTACCGCCACCCGAC 62.453 60.000 0.00 0.00 40.02 4.79
5307 5621 4.143333 CTACCGCCACCCGACCTG 62.143 72.222 0.00 0.00 40.02 4.00
5326 5640 4.027755 CGGTAGCCTAACGCCATG 57.972 61.111 0.00 0.00 38.78 3.66
5327 5641 1.143183 CGGTAGCCTAACGCCATGT 59.857 57.895 0.00 0.00 38.78 3.21
5328 5642 0.874607 CGGTAGCCTAACGCCATGTC 60.875 60.000 0.00 0.00 38.78 3.06
5329 5643 0.532196 GGTAGCCTAACGCCATGTCC 60.532 60.000 0.00 0.00 38.78 4.02
5330 5644 0.532196 GTAGCCTAACGCCATGTCCC 60.532 60.000 0.00 0.00 38.78 4.46
5331 5645 1.692173 TAGCCTAACGCCATGTCCCC 61.692 60.000 0.00 0.00 38.78 4.81
5332 5646 3.043999 GCCTAACGCCATGTCCCCT 62.044 63.158 0.00 0.00 0.00 4.79
5333 5647 1.692173 GCCTAACGCCATGTCCCCTA 61.692 60.000 0.00 0.00 0.00 3.53
5334 5648 0.393077 CCTAACGCCATGTCCCCTAG 59.607 60.000 0.00 0.00 0.00 3.02
5335 5649 1.120530 CTAACGCCATGTCCCCTAGT 58.879 55.000 0.00 0.00 0.00 2.57
5336 5650 0.828022 TAACGCCATGTCCCCTAGTG 59.172 55.000 0.00 0.00 0.00 2.74
5337 5651 1.910580 AACGCCATGTCCCCTAGTGG 61.911 60.000 0.00 0.00 34.84 4.00
5338 5652 2.367202 CGCCATGTCCCCTAGTGGT 61.367 63.158 0.00 0.00 34.23 4.16
5339 5653 1.046472 CGCCATGTCCCCTAGTGGTA 61.046 60.000 0.00 0.00 34.23 3.25
5340 5654 0.759346 GCCATGTCCCCTAGTGGTAG 59.241 60.000 0.00 0.00 34.23 3.18
5341 5655 1.424638 CCATGTCCCCTAGTGGTAGG 58.575 60.000 0.00 0.00 45.25 3.18
5353 5667 2.339769 AGTGGTAGGATAATGGGAGGC 58.660 52.381 0.00 0.00 0.00 4.70
5354 5668 1.351350 GTGGTAGGATAATGGGAGGCC 59.649 57.143 0.00 0.00 0.00 5.19
5355 5669 0.613777 GGTAGGATAATGGGAGGCCG 59.386 60.000 0.00 0.00 0.00 6.13
5356 5670 0.036294 GTAGGATAATGGGAGGCCGC 60.036 60.000 0.00 0.00 0.00 6.53
5357 5671 0.178903 TAGGATAATGGGAGGCCGCT 60.179 55.000 6.40 0.00 0.00 5.52
5358 5672 0.178903 AGGATAATGGGAGGCCGCTA 60.179 55.000 6.40 0.00 0.00 4.26
5359 5673 0.690762 GGATAATGGGAGGCCGCTAA 59.309 55.000 6.40 0.00 0.00 3.09
5360 5674 1.610886 GGATAATGGGAGGCCGCTAAC 60.611 57.143 6.40 0.00 0.00 2.34
5361 5675 0.034896 ATAATGGGAGGCCGCTAACG 59.965 55.000 6.40 0.00 39.67 3.18
5378 5692 4.208686 GGTCGTCCGCCCTAGCTG 62.209 72.222 0.00 0.00 36.60 4.24
5379 5693 3.138798 GTCGTCCGCCCTAGCTGA 61.139 66.667 0.00 0.00 36.60 4.26
5380 5694 3.138798 TCGTCCGCCCTAGCTGAC 61.139 66.667 0.00 0.15 46.41 3.51
5382 5696 3.450115 GTCCGCCCTAGCTGACGT 61.450 66.667 0.00 0.00 42.29 4.34
5383 5697 3.449227 TCCGCCCTAGCTGACGTG 61.449 66.667 0.00 0.00 36.60 4.49
5384 5698 4.514577 CCGCCCTAGCTGACGTGG 62.515 72.222 0.00 0.00 36.60 4.94
5385 5699 3.449227 CGCCCTAGCTGACGTGGA 61.449 66.667 0.00 0.00 36.60 4.02
5386 5700 2.786495 CGCCCTAGCTGACGTGGAT 61.786 63.158 0.00 0.00 36.60 3.41
5387 5701 1.452953 CGCCCTAGCTGACGTGGATA 61.453 60.000 0.00 0.00 36.60 2.59
5388 5702 0.750850 GCCCTAGCTGACGTGGATAA 59.249 55.000 0.00 0.00 35.50 1.75
5389 5703 1.269831 GCCCTAGCTGACGTGGATAAG 60.270 57.143 0.00 0.00 35.50 1.73
5390 5704 1.341531 CCCTAGCTGACGTGGATAAGG 59.658 57.143 0.00 0.00 0.00 2.69
5391 5705 1.269831 CCTAGCTGACGTGGATAAGGC 60.270 57.143 0.00 0.00 0.00 4.35
5392 5706 1.409064 CTAGCTGACGTGGATAAGGCA 59.591 52.381 0.00 0.00 0.00 4.75
5393 5707 0.108138 AGCTGACGTGGATAAGGCAC 60.108 55.000 0.00 0.00 0.00 5.01
5394 5708 1.090052 GCTGACGTGGATAAGGCACC 61.090 60.000 0.00 0.00 0.00 5.01
5395 5709 0.537188 CTGACGTGGATAAGGCACCT 59.463 55.000 0.00 0.00 0.00 4.00
5396 5710 1.754803 CTGACGTGGATAAGGCACCTA 59.245 52.381 0.00 0.00 0.00 3.08
5397 5711 1.479323 TGACGTGGATAAGGCACCTAC 59.521 52.381 0.00 0.00 0.00 3.18
5398 5712 0.828677 ACGTGGATAAGGCACCTACC 59.171 55.000 0.00 0.00 0.00 3.18
5399 5713 0.249322 CGTGGATAAGGCACCTACCG 60.249 60.000 0.00 0.00 33.69 4.02
5400 5714 0.532196 GTGGATAAGGCACCTACCGC 60.532 60.000 0.00 0.00 33.69 5.68
5407 5721 2.436115 GCACCTACCGCCAAGGAC 60.436 66.667 3.26 0.00 45.00 3.85
5408 5722 2.267961 CACCTACCGCCAAGGACC 59.732 66.667 3.26 0.00 45.00 4.46
5409 5723 3.007323 ACCTACCGCCAAGGACCC 61.007 66.667 3.26 0.00 45.00 4.46
5410 5724 3.793888 CCTACCGCCAAGGACCCC 61.794 72.222 0.00 0.00 45.00 4.95
5411 5725 4.157120 CTACCGCCAAGGACCCCG 62.157 72.222 0.00 0.00 45.00 5.73
5431 5745 4.029809 GGTAGGGTGCGTTGGCCT 62.030 66.667 3.32 0.00 38.85 5.19
5432 5746 2.662070 GGTAGGGTGCGTTGGCCTA 61.662 63.158 3.32 0.00 38.85 3.93
5433 5747 1.449070 GTAGGGTGCGTTGGCCTAC 60.449 63.158 7.33 7.33 38.85 3.18
5434 5748 2.662070 TAGGGTGCGTTGGCCTACC 61.662 63.158 11.91 8.22 38.85 3.18
5457 5771 3.998672 GGTCGGTTCGGCAGTGGA 61.999 66.667 0.00 0.00 30.88 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.484229 CGCTTGTAATTCGGCTTTCAGAG 60.484 47.826 0.00 0.00 0.00 3.35
7 8 2.415168 CGCTTGTAATTCGGCTTTCAGA 59.585 45.455 0.00 0.00 0.00 3.27
8 9 2.415168 TCGCTTGTAATTCGGCTTTCAG 59.585 45.455 0.00 0.00 0.00 3.02
9 10 2.418692 TCGCTTGTAATTCGGCTTTCA 58.581 42.857 0.00 0.00 0.00 2.69
10 11 3.675467 ATCGCTTGTAATTCGGCTTTC 57.325 42.857 0.00 0.00 0.00 2.62
11 12 5.510671 CATTATCGCTTGTAATTCGGCTTT 58.489 37.500 0.00 0.00 0.00 3.51
12 13 4.554723 GCATTATCGCTTGTAATTCGGCTT 60.555 41.667 0.00 0.00 0.00 4.35
13 14 3.058914 GCATTATCGCTTGTAATTCGGCT 60.059 43.478 0.00 0.00 0.00 5.52
14 15 3.226347 GCATTATCGCTTGTAATTCGGC 58.774 45.455 0.00 0.00 0.00 5.54
15 16 4.466567 TGCATTATCGCTTGTAATTCGG 57.533 40.909 0.00 0.00 0.00 4.30
16 17 4.905866 CCTTGCATTATCGCTTGTAATTCG 59.094 41.667 0.00 0.00 0.00 3.34
17 18 4.676924 GCCTTGCATTATCGCTTGTAATTC 59.323 41.667 0.00 0.00 0.00 2.17
18 19 4.097741 TGCCTTGCATTATCGCTTGTAATT 59.902 37.500 0.00 0.00 31.71 1.40
19 20 3.631686 TGCCTTGCATTATCGCTTGTAAT 59.368 39.130 0.00 0.00 31.71 1.89
20 21 3.013219 TGCCTTGCATTATCGCTTGTAA 58.987 40.909 0.00 0.00 31.71 2.41
21 22 2.637947 TGCCTTGCATTATCGCTTGTA 58.362 42.857 0.00 0.00 31.71 2.41
22 23 1.462616 TGCCTTGCATTATCGCTTGT 58.537 45.000 0.00 0.00 31.71 3.16
33 34 3.061752 CCAAAGCCATGCCTTGCA 58.938 55.556 0.00 0.00 44.86 4.08
34 35 2.435410 GCCAAAGCCATGCCTTGC 60.435 61.111 0.00 0.00 29.60 4.01
48 49 2.308570 AGTGTAGAATGTTGGATGGCCA 59.691 45.455 8.56 8.56 44.17 5.36
49 50 3.004752 AGTGTAGAATGTTGGATGGCC 57.995 47.619 0.00 0.00 0.00 5.36
50 51 4.009675 TGAAGTGTAGAATGTTGGATGGC 58.990 43.478 0.00 0.00 0.00 4.40
51 52 5.707298 ACTTGAAGTGTAGAATGTTGGATGG 59.293 40.000 0.00 0.00 0.00 3.51
52 53 6.348786 CCACTTGAAGTGTAGAATGTTGGATG 60.349 42.308 22.40 0.00 44.50 3.51
53 54 5.707298 CCACTTGAAGTGTAGAATGTTGGAT 59.293 40.000 22.40 0.00 44.50 3.41
54 55 5.063204 CCACTTGAAGTGTAGAATGTTGGA 58.937 41.667 22.40 0.00 44.50 3.53
55 56 4.821805 ACCACTTGAAGTGTAGAATGTTGG 59.178 41.667 22.40 7.04 44.50 3.77
56 57 5.333339 CGACCACTTGAAGTGTAGAATGTTG 60.333 44.000 22.40 12.34 44.50 3.33
57 58 4.750098 CGACCACTTGAAGTGTAGAATGTT 59.250 41.667 22.40 0.00 44.50 2.71
58 59 4.202223 ACGACCACTTGAAGTGTAGAATGT 60.202 41.667 22.40 12.55 44.50 2.71
59 60 4.307432 ACGACCACTTGAAGTGTAGAATG 58.693 43.478 22.40 9.57 44.50 2.67
60 61 4.602340 ACGACCACTTGAAGTGTAGAAT 57.398 40.909 22.40 4.12 44.50 2.40
61 62 4.142116 TGAACGACCACTTGAAGTGTAGAA 60.142 41.667 22.40 0.71 44.50 2.10
62 63 3.382227 TGAACGACCACTTGAAGTGTAGA 59.618 43.478 22.40 0.00 44.50 2.59
63 64 3.713288 TGAACGACCACTTGAAGTGTAG 58.287 45.455 22.40 15.23 44.50 2.74
64 65 3.382227 TCTGAACGACCACTTGAAGTGTA 59.618 43.478 22.40 1.31 44.50 2.90
65 66 2.167693 TCTGAACGACCACTTGAAGTGT 59.832 45.455 22.40 11.56 44.50 3.55
66 67 2.540101 GTCTGAACGACCACTTGAAGTG 59.460 50.000 18.04 18.04 45.53 3.16
67 68 2.822764 GTCTGAACGACCACTTGAAGT 58.177 47.619 0.00 0.00 36.62 3.01
80 81 1.080705 CCACCGAGTCCGTCTGAAC 60.081 63.158 0.00 0.00 0.00 3.18
81 82 0.824595 TTCCACCGAGTCCGTCTGAA 60.825 55.000 0.00 0.00 0.00 3.02
82 83 1.228337 TTCCACCGAGTCCGTCTGA 60.228 57.895 0.00 0.00 0.00 3.27
83 84 1.213013 CTTCCACCGAGTCCGTCTG 59.787 63.158 0.00 0.00 0.00 3.51
84 85 2.637383 GCTTCCACCGAGTCCGTCT 61.637 63.158 0.00 0.00 0.00 4.18
85 86 2.126031 GCTTCCACCGAGTCCGTC 60.126 66.667 0.00 0.00 0.00 4.79
86 87 4.052229 CGCTTCCACCGAGTCCGT 62.052 66.667 0.00 0.00 0.00 4.69
88 89 3.991536 GAGCGCTTCCACCGAGTCC 62.992 68.421 13.26 0.00 0.00 3.85
89 90 2.507324 GAGCGCTTCCACCGAGTC 60.507 66.667 13.26 0.00 0.00 3.36
90 91 2.992114 AGAGCGCTTCCACCGAGT 60.992 61.111 13.26 0.00 0.00 4.18
91 92 2.202676 GAGAGCGCTTCCACCGAG 60.203 66.667 13.26 0.00 0.00 4.63
92 93 2.492449 CTTGAGAGCGCTTCCACCGA 62.492 60.000 13.26 0.00 0.00 4.69
93 94 2.048222 TTGAGAGCGCTTCCACCG 60.048 61.111 13.26 0.00 0.00 4.94
94 95 0.603975 AACTTGAGAGCGCTTCCACC 60.604 55.000 13.26 0.00 0.00 4.61
95 96 1.069636 CAAACTTGAGAGCGCTTCCAC 60.070 52.381 13.26 0.00 0.00 4.02
96 97 1.229428 CAAACTTGAGAGCGCTTCCA 58.771 50.000 13.26 10.25 0.00 3.53
97 98 1.230324 ACAAACTTGAGAGCGCTTCC 58.770 50.000 13.26 7.26 0.00 3.46
98 99 2.287915 TCAACAAACTTGAGAGCGCTTC 59.712 45.455 13.26 11.95 0.00 3.86
99 100 2.288666 TCAACAAACTTGAGAGCGCTT 58.711 42.857 13.26 0.58 0.00 4.68
100 101 1.869767 CTCAACAAACTTGAGAGCGCT 59.130 47.619 11.27 11.27 46.57 5.92
101 102 1.661460 GCTCAACAAACTTGAGAGCGC 60.661 52.381 18.46 0.00 46.57 5.92
102 103 2.306799 GCTCAACAAACTTGAGAGCG 57.693 50.000 18.46 0.00 46.57 5.03
103 104 3.549625 CCTTGCTCAACAAACTTGAGAGC 60.550 47.826 22.72 22.72 46.57 4.09
104 105 3.004106 CCCTTGCTCAACAAACTTGAGAG 59.996 47.826 13.14 7.99 46.57 3.20
105 106 2.951642 CCCTTGCTCAACAAACTTGAGA 59.048 45.455 13.14 0.00 46.57 3.27
106 107 2.951642 TCCCTTGCTCAACAAACTTGAG 59.048 45.455 5.82 5.82 46.42 3.02
107 108 2.687935 GTCCCTTGCTCAACAAACTTGA 59.312 45.455 0.00 0.00 37.96 3.02
108 109 2.689983 AGTCCCTTGCTCAACAAACTTG 59.310 45.455 0.00 0.00 37.96 3.16
109 110 2.689983 CAGTCCCTTGCTCAACAAACTT 59.310 45.455 0.00 0.00 37.96 2.66
110 111 2.301346 CAGTCCCTTGCTCAACAAACT 58.699 47.619 0.00 0.00 37.96 2.66
111 112 1.338020 CCAGTCCCTTGCTCAACAAAC 59.662 52.381 0.00 0.00 37.96 2.93
112 113 1.214175 TCCAGTCCCTTGCTCAACAAA 59.786 47.619 0.00 0.00 37.96 2.83
113 114 0.843309 TCCAGTCCCTTGCTCAACAA 59.157 50.000 0.00 0.00 36.62 2.83
114 115 0.397941 CTCCAGTCCCTTGCTCAACA 59.602 55.000 0.00 0.00 0.00 3.33
115 116 0.957888 GCTCCAGTCCCTTGCTCAAC 60.958 60.000 0.00 0.00 0.00 3.18
116 117 1.376466 GCTCCAGTCCCTTGCTCAA 59.624 57.895 0.00 0.00 0.00 3.02
117 118 2.947532 CGCTCCAGTCCCTTGCTCA 61.948 63.158 0.00 0.00 0.00 4.26
118 119 2.125350 CGCTCCAGTCCCTTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
119 120 2.456287 GAACGCTCCAGTCCCTTGCT 62.456 60.000 0.00 0.00 0.00 3.91
120 121 2.032681 AACGCTCCAGTCCCTTGC 59.967 61.111 0.00 0.00 0.00 4.01
121 122 1.738099 CGAACGCTCCAGTCCCTTG 60.738 63.158 0.00 0.00 0.00 3.61
122 123 2.657237 CGAACGCTCCAGTCCCTT 59.343 61.111 0.00 0.00 0.00 3.95
123 124 3.382832 CCGAACGCTCCAGTCCCT 61.383 66.667 0.00 0.00 0.00 4.20
135 136 1.227556 AGATGCCCATACGCCGAAC 60.228 57.895 0.00 0.00 0.00 3.95
136 137 1.227527 CAGATGCCCATACGCCGAA 60.228 57.895 0.00 0.00 0.00 4.30
137 138 2.421314 CAGATGCCCATACGCCGA 59.579 61.111 0.00 0.00 0.00 5.54
138 139 2.666190 CCAGATGCCCATACGCCG 60.666 66.667 0.00 0.00 0.00 6.46
139 140 1.152963 AACCAGATGCCCATACGCC 60.153 57.895 0.00 0.00 0.00 5.68
140 141 1.498865 CGAACCAGATGCCCATACGC 61.499 60.000 0.00 0.00 0.00 4.42
141 142 1.498865 GCGAACCAGATGCCCATACG 61.499 60.000 0.00 0.00 0.00 3.06
142 143 1.498865 CGCGAACCAGATGCCCATAC 61.499 60.000 0.00 0.00 0.00 2.39
143 144 1.227527 CGCGAACCAGATGCCCATA 60.228 57.895 0.00 0.00 0.00 2.74
144 145 2.514592 CGCGAACCAGATGCCCAT 60.515 61.111 0.00 0.00 0.00 4.00
145 146 3.664025 CTCGCGAACCAGATGCCCA 62.664 63.158 11.33 0.00 0.00 5.36
146 147 2.650813 ATCTCGCGAACCAGATGCCC 62.651 60.000 11.33 0.00 0.00 5.36
147 148 1.218230 GATCTCGCGAACCAGATGCC 61.218 60.000 11.33 0.00 29.01 4.40
148 149 0.528466 TGATCTCGCGAACCAGATGC 60.528 55.000 11.33 4.72 29.01 3.91
149 150 1.857217 CTTGATCTCGCGAACCAGATG 59.143 52.381 11.33 0.00 29.01 2.90
150 151 1.202463 CCTTGATCTCGCGAACCAGAT 60.202 52.381 11.33 9.49 31.70 2.90
151 152 0.173481 CCTTGATCTCGCGAACCAGA 59.827 55.000 11.33 3.87 0.00 3.86
152 153 0.173481 TCCTTGATCTCGCGAACCAG 59.827 55.000 11.33 6.04 0.00 4.00
153 154 0.173481 CTCCTTGATCTCGCGAACCA 59.827 55.000 11.33 5.40 0.00 3.67
154 155 0.173708 ACTCCTTGATCTCGCGAACC 59.826 55.000 11.33 2.43 0.00 3.62
155 156 1.656095 CAACTCCTTGATCTCGCGAAC 59.344 52.381 11.33 5.44 0.00 3.95
156 157 1.544246 TCAACTCCTTGATCTCGCGAA 59.456 47.619 11.33 1.32 31.00 4.70
157 158 1.173913 TCAACTCCTTGATCTCGCGA 58.826 50.000 9.26 9.26 31.00 5.87
158 159 2.215907 ATCAACTCCTTGATCTCGCG 57.784 50.000 0.00 0.00 42.54 5.87
159 160 3.265791 ACAATCAACTCCTTGATCTCGC 58.734 45.455 0.00 0.00 44.93 5.03
160 161 5.869344 TGTTACAATCAACTCCTTGATCTCG 59.131 40.000 0.00 0.00 44.93 4.04
161 162 6.876257 AGTGTTACAATCAACTCCTTGATCTC 59.124 38.462 0.00 0.00 44.93 2.75
162 163 6.773638 AGTGTTACAATCAACTCCTTGATCT 58.226 36.000 0.00 0.00 44.93 2.75
163 164 8.723942 ATAGTGTTACAATCAACTCCTTGATC 57.276 34.615 0.00 0.00 44.93 2.92
167 168 9.614792 GGATAATAGTGTTACAATCAACTCCTT 57.385 33.333 0.00 0.00 0.00 3.36
168 169 8.768397 TGGATAATAGTGTTACAATCAACTCCT 58.232 33.333 0.00 0.00 0.00 3.69
169 170 8.958119 TGGATAATAGTGTTACAATCAACTCC 57.042 34.615 0.00 0.00 0.00 3.85
170 171 9.601217 ACTGGATAATAGTGTTACAATCAACTC 57.399 33.333 0.00 0.00 0.00 3.01
188 189 9.910267 GGGTAAAGGAGTTTTATTACTGGATAA 57.090 33.333 0.00 0.00 33.99 1.75
189 190 8.496916 GGGGTAAAGGAGTTTTATTACTGGATA 58.503 37.037 0.00 0.00 33.99 2.59
190 191 7.351952 GGGGTAAAGGAGTTTTATTACTGGAT 58.648 38.462 0.00 0.00 33.99 3.41
191 192 6.576840 CGGGGTAAAGGAGTTTTATTACTGGA 60.577 42.308 0.00 0.00 33.99 3.86
192 193 5.587443 CGGGGTAAAGGAGTTTTATTACTGG 59.413 44.000 0.00 0.00 33.99 4.00
193 194 6.408869 TCGGGGTAAAGGAGTTTTATTACTG 58.591 40.000 0.00 0.00 33.99 2.74
194 195 6.625532 TCGGGGTAAAGGAGTTTTATTACT 57.374 37.500 0.00 0.00 33.99 2.24
195 196 7.686438 TTTCGGGGTAAAGGAGTTTTATTAC 57.314 36.000 0.00 0.00 33.99 1.89
196 197 8.703378 TTTTTCGGGGTAAAGGAGTTTTATTA 57.297 30.769 0.00 0.00 33.99 0.98
197 198 7.600231 TTTTTCGGGGTAAAGGAGTTTTATT 57.400 32.000 0.00 0.00 33.99 1.40
218 219 3.716601 CCGTCCATGCAAGTTTCTTTTT 58.283 40.909 0.00 0.00 0.00 1.94
219 220 2.545742 GCCGTCCATGCAAGTTTCTTTT 60.546 45.455 0.00 0.00 0.00 2.27
220 221 1.000274 GCCGTCCATGCAAGTTTCTTT 60.000 47.619 0.00 0.00 0.00 2.52
221 222 0.598065 GCCGTCCATGCAAGTTTCTT 59.402 50.000 0.00 0.00 0.00 2.52
222 223 1.577328 CGCCGTCCATGCAAGTTTCT 61.577 55.000 0.00 0.00 0.00 2.52
223 224 1.154225 CGCCGTCCATGCAAGTTTC 60.154 57.895 0.00 0.00 0.00 2.78
224 225 1.896660 ACGCCGTCCATGCAAGTTT 60.897 52.632 0.00 0.00 0.00 2.66
225 226 2.281484 ACGCCGTCCATGCAAGTT 60.281 55.556 0.00 0.00 0.00 2.66
254 255 0.249120 TCCTTGCAGGTGGTATCGTG 59.751 55.000 0.00 0.00 36.53 4.35
293 297 3.652869 TCCACTTGTCCTCTCATTTTCCT 59.347 43.478 0.00 0.00 0.00 3.36
294 298 4.006319 CTCCACTTGTCCTCTCATTTTCC 58.994 47.826 0.00 0.00 0.00 3.13
476 480 2.317378 GGGGGAGAGGGGAAAAGGG 61.317 68.421 0.00 0.00 0.00 3.95
724 743 7.494298 CACAAACTGGGGCAAAATAATAATACC 59.506 37.037 0.00 0.00 0.00 2.73
741 760 5.239306 TCAAGATTCAGCTAACACAAACTGG 59.761 40.000 0.00 0.00 0.00 4.00
782 801 6.435591 TCCTATATCAGTATCTGGCAGACAAG 59.564 42.308 21.37 10.34 31.51 3.16
834 858 2.111999 CTCCTTCTCCGCAACACCCA 62.112 60.000 0.00 0.00 0.00 4.51
835 859 1.376037 CTCCTTCTCCGCAACACCC 60.376 63.158 0.00 0.00 0.00 4.61
836 860 2.035442 GCTCCTTCTCCGCAACACC 61.035 63.158 0.00 0.00 0.00 4.16
837 861 2.383527 CGCTCCTTCTCCGCAACAC 61.384 63.158 0.00 0.00 0.00 3.32
838 862 1.888436 ATCGCTCCTTCTCCGCAACA 61.888 55.000 0.00 0.00 0.00 3.33
839 863 0.741221 AATCGCTCCTTCTCCGCAAC 60.741 55.000 0.00 0.00 0.00 4.17
840 864 0.036388 AAATCGCTCCTTCTCCGCAA 60.036 50.000 0.00 0.00 0.00 4.85
841 865 0.460284 GAAATCGCTCCTTCTCCGCA 60.460 55.000 0.00 0.00 0.00 5.69
842 866 0.179097 AGAAATCGCTCCTTCTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
843 867 2.301577 AAGAAATCGCTCCTTCTCCG 57.698 50.000 0.00 0.00 30.57 4.63
844 868 4.257731 AGAAAAGAAATCGCTCCTTCTCC 58.742 43.478 0.00 0.00 30.57 3.71
845 869 5.180304 ACAAGAAAAGAAATCGCTCCTTCTC 59.820 40.000 0.00 0.00 30.57 2.87
846 870 5.066593 ACAAGAAAAGAAATCGCTCCTTCT 58.933 37.500 0.00 0.00 33.25 2.85
847 871 5.363979 ACAAGAAAAGAAATCGCTCCTTC 57.636 39.130 0.00 0.00 0.00 3.46
848 872 5.774498 AACAAGAAAAGAAATCGCTCCTT 57.226 34.783 0.00 0.00 0.00 3.36
849 873 5.560953 CGAAACAAGAAAAGAAATCGCTCCT 60.561 40.000 0.00 0.00 0.00 3.69
850 874 4.613031 CGAAACAAGAAAAGAAATCGCTCC 59.387 41.667 0.00 0.00 0.00 4.70
851 875 4.613031 CCGAAACAAGAAAAGAAATCGCTC 59.387 41.667 0.00 0.00 0.00 5.03
852 876 4.036380 ACCGAAACAAGAAAAGAAATCGCT 59.964 37.500 0.00 0.00 0.00 4.93
853 877 4.146443 CACCGAAACAAGAAAAGAAATCGC 59.854 41.667 0.00 0.00 0.00 4.58
854 878 4.675114 CCACCGAAACAAGAAAAGAAATCG 59.325 41.667 0.00 0.00 0.00 3.34
855 879 5.827666 TCCACCGAAACAAGAAAAGAAATC 58.172 37.500 0.00 0.00 0.00 2.17
856 880 5.359860 ACTCCACCGAAACAAGAAAAGAAAT 59.640 36.000 0.00 0.00 0.00 2.17
886 918 2.457366 ACACTCGGACTGTTGATTCC 57.543 50.000 0.00 0.00 0.00 3.01
892 924 4.027755 CGCAACACTCGGACTGTT 57.972 55.556 0.00 0.00 31.80 3.16
987 1019 3.136123 CCCATCTGCCGCCAACAG 61.136 66.667 0.00 0.00 36.44 3.16
1202 1234 2.031163 GTGGTGAGGCAGCGACTT 59.969 61.111 0.00 0.00 34.27 3.01
1335 1379 1.993391 CGGTATGAGTGGTGGGGGT 60.993 63.158 0.00 0.00 0.00 4.95
1575 1619 2.558378 CAATCGTCATCCATGCTGACT 58.442 47.619 18.73 4.62 40.68 3.41
1719 1763 2.025981 TGTTACCCAGCTGCTCATCATT 60.026 45.455 8.66 0.00 0.00 2.57
1860 1904 0.815615 GGCCGGTAGCAGAATCCAAG 60.816 60.000 1.90 0.00 46.50 3.61
2042 2092 8.157476 ACAAGAAGGTTGACATACTTCATAGTT 58.843 33.333 17.06 5.00 42.24 2.24
2171 2261 7.015682 AGAGAGACGTATGGAATATGGAATGTT 59.984 37.037 0.00 0.00 40.15 2.71
2461 2551 3.937814 TGCATTTCGGTGAACATAGACT 58.062 40.909 0.00 0.00 0.00 3.24
2866 2956 7.095017 GCAGCTAATTCAATAACCTGAGGATAC 60.095 40.741 4.99 0.00 0.00 2.24
2979 3070 6.566079 TCAGGAATCAAATACAGAGACCAT 57.434 37.500 0.00 0.00 0.00 3.55
3073 3166 8.051468 TGTGTCCCCCTTATGATGAAATTATA 57.949 34.615 0.00 0.00 0.00 0.98
3090 3183 5.511545 CCATAAGAGCTATACTTGTGTCCCC 60.512 48.000 8.80 0.00 35.67 4.81
3156 3249 1.333619 CAACATAAGTGCCGGCCATAC 59.666 52.381 26.77 16.33 0.00 2.39
3237 3330 5.070981 TCATTGGTGGGAAAAATACAAGCAA 59.929 36.000 0.00 0.00 0.00 3.91
3319 3412 1.394618 ATAGCAGTCACGAGGGAGAC 58.605 55.000 0.00 0.00 34.42 3.36
3327 3420 2.345641 CGACAAGGAAATAGCAGTCACG 59.654 50.000 0.00 0.00 0.00 4.35
3343 3436 3.869246 GTGTCAGAAGAGAAAACCGACAA 59.131 43.478 0.00 0.00 34.04 3.18
3374 3467 3.071479 GCCCACATAAACAGAAACGAGA 58.929 45.455 0.00 0.00 0.00 4.04
3375 3468 2.159707 CGCCCACATAAACAGAAACGAG 60.160 50.000 0.00 0.00 0.00 4.18
3377 3470 1.533731 ACGCCCACATAAACAGAAACG 59.466 47.619 0.00 0.00 0.00 3.60
3378 3471 2.351350 CCACGCCCACATAAACAGAAAC 60.351 50.000 0.00 0.00 0.00 2.78
3379 3472 1.883275 CCACGCCCACATAAACAGAAA 59.117 47.619 0.00 0.00 0.00 2.52
3397 3490 4.956085 TCAAGAATCGAAAACAGAGACCA 58.044 39.130 0.00 0.00 0.00 4.02
3432 3602 9.007901 AGAAGAGAAAACTGACATGGAAATAAG 57.992 33.333 0.00 0.00 0.00 1.73
3446 3616 6.879400 AGTAAGTGTGTCAGAAGAGAAAACT 58.121 36.000 0.00 0.00 0.00 2.66
3450 3620 6.098409 AGGAAAGTAAGTGTGTCAGAAGAGAA 59.902 38.462 0.00 0.00 0.00 2.87
3469 3639 2.551459 CCTGAGTCACAAGCAAGGAAAG 59.449 50.000 0.00 0.00 0.00 2.62
3721 3891 2.483106 CTCATTATCAGGCAGGCAATCG 59.517 50.000 0.00 0.00 0.00 3.34
3889 4074 5.959554 GTCGTCCAAATATGTACGATGAAC 58.040 41.667 0.18 0.00 45.04 3.18
3896 4081 4.427312 AGGTTCGTCGTCCAAATATGTAC 58.573 43.478 10.61 0.00 0.00 2.90
4152 4381 2.668550 GGTGTGCGAACCCTGGTC 60.669 66.667 0.00 0.00 33.79 4.02
4153 4382 3.476031 CTGGTGTGCGAACCCTGGT 62.476 63.158 5.25 0.00 39.70 4.00
4167 4396 1.551452 GACACTGAGTAGCTCCTGGT 58.449 55.000 0.00 0.00 0.00 4.00
4343 4572 2.462255 CTTCAAACGCCTGCACGCAT 62.462 55.000 8.42 0.00 36.19 4.73
4364 4593 0.598419 CTTCGCTGCATCGGCTGATA 60.598 55.000 7.96 0.00 41.06 2.15
4424 4656 0.534412 CATCACAGGAAGAGACGGCT 59.466 55.000 0.00 0.00 0.00 5.52
4493 4725 1.529744 AGGGTGGTTTTTGGAGAGGA 58.470 50.000 0.00 0.00 0.00 3.71
4642 4878 6.545298 AGCTTTCAATCATACAGGAATCCTTC 59.455 38.462 0.00 0.00 0.00 3.46
4704 4942 0.546122 TCAGTCCTTGTGGCAGTGTT 59.454 50.000 0.00 0.00 0.00 3.32
4705 4943 0.107456 CTCAGTCCTTGTGGCAGTGT 59.893 55.000 0.00 0.00 0.00 3.55
4706 4944 0.394192 TCTCAGTCCTTGTGGCAGTG 59.606 55.000 0.00 0.00 0.00 3.66
4708 4946 0.036577 CCTCTCAGTCCTTGTGGCAG 60.037 60.000 0.00 0.00 0.00 4.85
4995 5307 4.022589 CACTCAAACAAAGCACCAGATCAT 60.023 41.667 0.00 0.00 0.00 2.45
5013 5325 1.832883 AACAACCACACTTGCACTCA 58.167 45.000 0.00 0.00 0.00 3.41
5056 5368 4.050553 ACAACGCAGACCATTTCAAAATG 58.949 39.130 8.23 8.23 44.12 2.32
5061 5373 1.601903 GTGACAACGCAGACCATTTCA 59.398 47.619 0.00 0.00 0.00 2.69
5127 5441 7.523293 TGTACCAAATTCTCATTTCATGTGT 57.477 32.000 0.00 0.00 29.41 3.72
5167 5481 3.568007 GTCAAAACACCAAGATGGCAGTA 59.432 43.478 0.00 0.00 42.67 2.74
5169 5483 2.288395 GGTCAAAACACCAAGATGGCAG 60.288 50.000 0.00 0.00 42.67 4.85
5172 5486 2.597455 AGGGTCAAAACACCAAGATGG 58.403 47.619 0.00 0.00 45.02 3.51
5174 5488 4.141733 CCAAAAGGGTCAAAACACCAAGAT 60.142 41.667 0.00 0.00 38.32 2.40
5186 5500 4.282496 TCTAAACTTTGCCAAAAGGGTCA 58.718 39.130 3.49 0.00 46.01 4.02
5208 5522 3.230976 GAAAGGGTCAAAACACCAGGAT 58.769 45.455 0.00 0.00 38.32 3.24
5209 5523 2.661718 GAAAGGGTCAAAACACCAGGA 58.338 47.619 0.00 0.00 38.32 3.86
5210 5524 1.336755 CGAAAGGGTCAAAACACCAGG 59.663 52.381 0.00 0.00 38.32 4.45
5211 5525 2.774439 CGAAAGGGTCAAAACACCAG 57.226 50.000 0.00 0.00 38.32 4.00
5229 5543 1.202336 AGATCCGGCTAAACGTTACCG 60.202 52.381 23.14 23.14 45.21 4.02
5230 5544 2.159198 TCAGATCCGGCTAAACGTTACC 60.159 50.000 0.00 2.80 0.00 2.85
5231 5545 3.155093 TCAGATCCGGCTAAACGTTAC 57.845 47.619 0.00 0.00 0.00 2.50
5232 5546 3.635373 AGATCAGATCCGGCTAAACGTTA 59.365 43.478 0.00 0.00 0.00 3.18
5233 5547 2.431057 AGATCAGATCCGGCTAAACGTT 59.569 45.455 6.80 0.00 0.00 3.99
5234 5548 2.032620 AGATCAGATCCGGCTAAACGT 58.967 47.619 6.80 0.00 0.00 3.99
5235 5549 2.608261 GGAGATCAGATCCGGCTAAACG 60.608 54.545 6.80 0.00 0.00 3.60
5236 5550 2.289133 GGGAGATCAGATCCGGCTAAAC 60.289 54.545 6.80 0.00 37.75 2.01
5237 5551 1.971357 GGGAGATCAGATCCGGCTAAA 59.029 52.381 6.80 0.00 37.75 1.85
5238 5552 1.148027 AGGGAGATCAGATCCGGCTAA 59.852 52.381 6.80 0.00 37.75 3.09
5239 5553 0.780637 AGGGAGATCAGATCCGGCTA 59.219 55.000 6.80 0.00 37.75 3.93
5240 5554 0.105246 AAGGGAGATCAGATCCGGCT 60.105 55.000 6.80 0.00 37.75 5.52
5241 5555 0.761802 AAAGGGAGATCAGATCCGGC 59.238 55.000 6.80 0.00 37.75 6.13
5242 5556 2.042464 TCAAAGGGAGATCAGATCCGG 58.958 52.381 6.80 0.00 37.75 5.14
5243 5557 3.827008 TTCAAAGGGAGATCAGATCCG 57.173 47.619 6.80 0.00 37.75 4.18
5244 5558 5.890419 ACAATTTCAAAGGGAGATCAGATCC 59.110 40.000 6.80 0.00 35.99 3.36
5245 5559 7.401955 AACAATTTCAAAGGGAGATCAGATC 57.598 36.000 1.64 1.64 0.00 2.75
5246 5560 7.362401 CGAAACAATTTCAAAGGGAGATCAGAT 60.362 37.037 0.00 0.00 39.63 2.90
5247 5561 6.072508 CGAAACAATTTCAAAGGGAGATCAGA 60.073 38.462 0.00 0.00 39.63 3.27
5248 5562 6.072508 TCGAAACAATTTCAAAGGGAGATCAG 60.073 38.462 0.00 0.00 39.63 2.90
5249 5563 5.767665 TCGAAACAATTTCAAAGGGAGATCA 59.232 36.000 0.00 0.00 39.63 2.92
5250 5564 6.149474 TCTCGAAACAATTTCAAAGGGAGATC 59.851 38.462 2.50 0.00 39.63 2.75
5251 5565 6.003950 TCTCGAAACAATTTCAAAGGGAGAT 58.996 36.000 2.50 0.00 39.63 2.75
5252 5566 5.373222 TCTCGAAACAATTTCAAAGGGAGA 58.627 37.500 2.50 2.95 39.63 3.71
5253 5567 5.689383 TCTCGAAACAATTTCAAAGGGAG 57.311 39.130 2.50 0.92 39.63 4.30
5254 5568 5.106712 CGATCTCGAAACAATTTCAAAGGGA 60.107 40.000 0.00 0.00 43.02 4.20
5255 5569 5.088739 CGATCTCGAAACAATTTCAAAGGG 58.911 41.667 0.00 0.00 43.02 3.95
5256 5570 5.927030 TCGATCTCGAAACAATTTCAAAGG 58.073 37.500 0.00 0.00 46.30 3.11
5271 5585 4.326548 GGTAGGAAAAAGTGTTCGATCTCG 59.673 45.833 0.00 0.00 41.45 4.04
5272 5586 4.326548 CGGTAGGAAAAAGTGTTCGATCTC 59.673 45.833 0.00 0.00 0.00 2.75
5273 5587 4.243270 CGGTAGGAAAAAGTGTTCGATCT 58.757 43.478 0.00 0.00 0.00 2.75
5274 5588 3.181523 GCGGTAGGAAAAAGTGTTCGATC 60.182 47.826 0.00 0.00 0.00 3.69
5275 5589 2.740447 GCGGTAGGAAAAAGTGTTCGAT 59.260 45.455 0.00 0.00 0.00 3.59
5276 5590 2.137523 GCGGTAGGAAAAAGTGTTCGA 58.862 47.619 0.00 0.00 0.00 3.71
5277 5591 1.196127 GGCGGTAGGAAAAAGTGTTCG 59.804 52.381 0.00 0.00 0.00 3.95
5278 5592 2.031420 GTGGCGGTAGGAAAAAGTGTTC 60.031 50.000 0.00 0.00 0.00 3.18
5279 5593 1.951602 GTGGCGGTAGGAAAAAGTGTT 59.048 47.619 0.00 0.00 0.00 3.32
5280 5594 1.601166 GTGGCGGTAGGAAAAAGTGT 58.399 50.000 0.00 0.00 0.00 3.55
5281 5595 0.879090 GGTGGCGGTAGGAAAAAGTG 59.121 55.000 0.00 0.00 0.00 3.16
5282 5596 0.251033 GGGTGGCGGTAGGAAAAAGT 60.251 55.000 0.00 0.00 0.00 2.66
5283 5597 1.303091 CGGGTGGCGGTAGGAAAAAG 61.303 60.000 0.00 0.00 0.00 2.27
5284 5598 1.302671 CGGGTGGCGGTAGGAAAAA 60.303 57.895 0.00 0.00 0.00 1.94
5285 5599 2.215625 TCGGGTGGCGGTAGGAAAA 61.216 57.895 0.00 0.00 0.00 2.29
5286 5600 2.604079 TCGGGTGGCGGTAGGAAA 60.604 61.111 0.00 0.00 0.00 3.13
5287 5601 3.384532 GTCGGGTGGCGGTAGGAA 61.385 66.667 0.00 0.00 0.00 3.36
5290 5604 4.143333 CAGGTCGGGTGGCGGTAG 62.143 72.222 0.00 0.00 0.00 3.18
5308 5622 2.108362 ATGGCGTTAGGCTACCGC 59.892 61.111 25.73 25.73 46.28 5.68
5309 5623 0.874607 GACATGGCGTTAGGCTACCG 60.875 60.000 7.15 7.15 44.18 4.02
5310 5624 0.532196 GGACATGGCGTTAGGCTACC 60.532 60.000 0.00 0.00 44.18 3.18
5311 5625 0.532196 GGGACATGGCGTTAGGCTAC 60.532 60.000 0.00 0.00 44.18 3.58
5312 5626 1.692173 GGGGACATGGCGTTAGGCTA 61.692 60.000 0.00 0.00 44.18 3.93
5313 5627 2.590092 GGGACATGGCGTTAGGCT 59.410 61.111 0.00 0.00 44.18 4.58
5314 5628 1.692173 TAGGGGACATGGCGTTAGGC 61.692 60.000 0.00 0.00 44.11 3.93
5315 5629 0.393077 CTAGGGGACATGGCGTTAGG 59.607 60.000 0.00 0.00 0.00 2.69
5316 5630 1.120530 ACTAGGGGACATGGCGTTAG 58.879 55.000 0.00 0.00 0.00 2.34
5317 5631 0.828022 CACTAGGGGACATGGCGTTA 59.172 55.000 0.00 0.00 0.00 3.18
5318 5632 1.602237 CACTAGGGGACATGGCGTT 59.398 57.895 0.00 0.00 0.00 4.84
5319 5633 2.367202 CCACTAGGGGACATGGCGT 61.367 63.158 4.45 0.00 0.00 5.68
5320 5634 1.046472 TACCACTAGGGGACATGGCG 61.046 60.000 20.81 0.00 42.91 5.69
5321 5635 0.759346 CTACCACTAGGGGACATGGC 59.241 60.000 20.81 0.00 42.91 4.40
5322 5636 1.062428 TCCTACCACTAGGGGACATGG 60.062 57.143 20.81 13.44 40.31 3.66
5323 5637 2.471815 TCCTACCACTAGGGGACATG 57.528 55.000 20.81 3.00 40.31 3.21
5324 5638 4.845530 TTATCCTACCACTAGGGGACAT 57.154 45.455 20.81 6.03 40.31 3.06
5325 5639 4.489737 CATTATCCTACCACTAGGGGACA 58.510 47.826 20.81 3.72 40.31 4.02
5326 5640 3.838903 CCATTATCCTACCACTAGGGGAC 59.161 52.174 20.81 0.00 40.31 4.46
5327 5641 3.181399 CCCATTATCCTACCACTAGGGGA 60.181 52.174 20.81 5.60 40.31 4.81
5328 5642 3.181399 TCCCATTATCCTACCACTAGGGG 60.181 52.174 10.33 10.33 40.31 4.79
5329 5643 4.097418 CTCCCATTATCCTACCACTAGGG 58.903 52.174 0.00 0.00 40.31 3.53
5330 5644 4.097418 CCTCCCATTATCCTACCACTAGG 58.903 52.174 0.00 0.00 41.19 3.02
5331 5645 3.515901 GCCTCCCATTATCCTACCACTAG 59.484 52.174 0.00 0.00 0.00 2.57
5332 5646 3.517612 GCCTCCCATTATCCTACCACTA 58.482 50.000 0.00 0.00 0.00 2.74
5333 5647 2.339769 GCCTCCCATTATCCTACCACT 58.660 52.381 0.00 0.00 0.00 4.00
5334 5648 1.351350 GGCCTCCCATTATCCTACCAC 59.649 57.143 0.00 0.00 0.00 4.16
5335 5649 1.742308 GGCCTCCCATTATCCTACCA 58.258 55.000 0.00 0.00 0.00 3.25
5336 5650 0.613777 CGGCCTCCCATTATCCTACC 59.386 60.000 0.00 0.00 0.00 3.18
5337 5651 0.036294 GCGGCCTCCCATTATCCTAC 60.036 60.000 0.00 0.00 0.00 3.18
5338 5652 0.178903 AGCGGCCTCCCATTATCCTA 60.179 55.000 0.00 0.00 0.00 2.94
5339 5653 0.178903 TAGCGGCCTCCCATTATCCT 60.179 55.000 0.00 0.00 0.00 3.24
5340 5654 0.690762 TTAGCGGCCTCCCATTATCC 59.309 55.000 0.00 0.00 0.00 2.59
5341 5655 1.809684 GTTAGCGGCCTCCCATTATC 58.190 55.000 0.00 0.00 0.00 1.75
5342 5656 0.034896 CGTTAGCGGCCTCCCATTAT 59.965 55.000 0.00 0.00 0.00 1.28
5343 5657 1.444250 CGTTAGCGGCCTCCCATTA 59.556 57.895 0.00 0.00 0.00 1.90
5344 5658 2.189521 CGTTAGCGGCCTCCCATT 59.810 61.111 0.00 0.00 0.00 3.16
5361 5675 4.208686 CAGCTAGGGCGGACGACC 62.209 72.222 8.94 8.94 45.79 4.79
5362 5676 3.138798 TCAGCTAGGGCGGACGAC 61.139 66.667 0.00 0.00 44.37 4.34
5366 5680 3.449227 CACGTCAGCTAGGGCGGA 61.449 66.667 2.97 0.00 44.37 5.54
5367 5681 4.514577 CCACGTCAGCTAGGGCGG 62.515 72.222 2.97 0.00 44.37 6.13
5368 5682 1.452953 TATCCACGTCAGCTAGGGCG 61.453 60.000 0.00 0.00 44.37 6.13
5369 5683 0.750850 TTATCCACGTCAGCTAGGGC 59.249 55.000 0.00 0.00 39.06 5.19
5370 5684 1.341531 CCTTATCCACGTCAGCTAGGG 59.658 57.143 0.00 0.00 0.00 3.53
5371 5685 1.269831 GCCTTATCCACGTCAGCTAGG 60.270 57.143 0.00 0.00 0.00 3.02
5372 5686 1.409064 TGCCTTATCCACGTCAGCTAG 59.591 52.381 0.00 0.00 0.00 3.42
5373 5687 1.136305 GTGCCTTATCCACGTCAGCTA 59.864 52.381 0.00 0.00 0.00 3.32
5374 5688 0.108138 GTGCCTTATCCACGTCAGCT 60.108 55.000 0.00 0.00 0.00 4.24
5375 5689 1.090052 GGTGCCTTATCCACGTCAGC 61.090 60.000 0.00 0.00 34.08 4.26
5376 5690 0.537188 AGGTGCCTTATCCACGTCAG 59.463 55.000 0.00 0.00 34.08 3.51
5377 5691 1.479323 GTAGGTGCCTTATCCACGTCA 59.521 52.381 0.00 0.00 33.80 4.35
5378 5692 1.202498 GGTAGGTGCCTTATCCACGTC 60.202 57.143 0.00 0.00 33.80 4.34
5379 5693 0.828677 GGTAGGTGCCTTATCCACGT 59.171 55.000 0.00 0.00 35.69 4.49
5380 5694 0.249322 CGGTAGGTGCCTTATCCACG 60.249 60.000 0.00 0.00 34.08 4.94
5381 5695 0.532196 GCGGTAGGTGCCTTATCCAC 60.532 60.000 0.00 0.00 0.00 4.02
5382 5696 1.827394 GCGGTAGGTGCCTTATCCA 59.173 57.895 0.00 0.00 0.00 3.41
5383 5697 4.773209 GCGGTAGGTGCCTTATCC 57.227 61.111 0.00 0.00 0.00 2.59
5390 5704 2.436115 GTCCTTGGCGGTAGGTGC 60.436 66.667 0.00 0.00 34.29 5.01
5391 5705 2.267961 GGTCCTTGGCGGTAGGTG 59.732 66.667 0.00 0.00 34.29 4.00
5392 5706 3.007323 GGGTCCTTGGCGGTAGGT 61.007 66.667 0.00 0.00 34.29 3.08
5393 5707 3.793888 GGGGTCCTTGGCGGTAGG 61.794 72.222 0.00 0.00 0.00 3.18
5394 5708 4.157120 CGGGGTCCTTGGCGGTAG 62.157 72.222 0.00 0.00 0.00 3.18
5414 5728 2.662070 TAGGCCAACGCACCCTACC 61.662 63.158 5.01 0.00 36.38 3.18
5415 5729 1.449070 GTAGGCCAACGCACCCTAC 60.449 63.158 5.01 6.46 42.88 3.18
5416 5730 2.662070 GGTAGGCCAACGCACCCTA 61.662 63.158 5.01 0.00 36.38 3.53
5417 5731 4.029809 GGTAGGCCAACGCACCCT 62.030 66.667 5.01 0.00 36.38 4.34
5440 5754 3.998672 TCCACTGCCGAACCGACC 61.999 66.667 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.