Multiple sequence alignment - TraesCS3D01G211800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G211800 chr3D 100.000 5241 0 0 1 5241 283313609 283318849 0.000000e+00 9679.0
1 TraesCS3D01G211800 chr3D 95.402 261 12 0 1623 1883 130234882 130234622 2.920000e-112 416.0
2 TraesCS3D01G211800 chr3B 94.630 2570 74 33 1894 4418 377423715 377426265 0.000000e+00 3923.0
3 TraesCS3D01G211800 chr3B 95.042 1654 41 19 1 1619 377422060 377423707 0.000000e+00 2562.0
4 TraesCS3D01G211800 chr3B 81.104 598 47 26 4653 5241 377426262 377426802 8.120000e-113 418.0
5 TraesCS3D01G211800 chr3A 96.939 2254 48 5 1884 4132 370238712 370240949 0.000000e+00 3760.0
6 TraesCS3D01G211800 chr3A 94.263 1621 59 13 1 1609 370237098 370238696 0.000000e+00 2447.0
7 TraesCS3D01G211800 chr3A 90.385 312 24 1 4466 4777 370241677 370241982 6.320000e-109 405.0
8 TraesCS3D01G211800 chr3A 93.617 94 4 1 5150 5241 370243223 370243316 7.080000e-29 139.0
9 TraesCS3D01G211800 chr3A 97.222 36 0 1 430 464 44444020 44443985 5.670000e-05 60.2
10 TraesCS3D01G211800 chr6D 78.851 1201 206 35 2632 3823 433477548 433476387 0.000000e+00 767.0
11 TraesCS3D01G211800 chr6A 78.768 1201 210 32 2632 3823 579438864 579437700 0.000000e+00 763.0
12 TraesCS3D01G211800 chr6B 78.732 1199 211 32 2632 3823 654734416 654733255 0.000000e+00 761.0
13 TraesCS3D01G211800 chr7A 77.321 1217 245 27 2627 3823 108237641 108236436 0.000000e+00 689.0
14 TraesCS3D01G211800 chr7A 95.506 267 12 0 1621 1887 659022533 659022799 1.350000e-115 427.0
15 TraesCS3D01G211800 chr7A 73.519 287 61 14 3174 3451 49047997 49047717 1.550000e-15 95.3
16 TraesCS3D01G211800 chr7D 77.239 1217 249 23 2627 3823 104091826 104090618 0.000000e+00 688.0
17 TraesCS3D01G211800 chr7B 77.157 1217 241 31 2627 3820 61910141 61908939 0.000000e+00 673.0
18 TraesCS3D01G211800 chr7B 97.222 36 0 1 430 464 458563443 458563408 5.670000e-05 60.2
19 TraesCS3D01G211800 chr2D 94.585 277 13 2 1621 1896 367231161 367230886 1.350000e-115 427.0
20 TraesCS3D01G211800 chr2D 95.076 264 13 0 1620 1883 229707146 229706883 2.920000e-112 416.0
21 TraesCS3D01G211800 chr2D 97.222 36 0 1 430 464 520639814 520639779 5.670000e-05 60.2
22 TraesCS3D01G211800 chr1D 95.833 264 10 1 1621 1883 180857966 180858229 4.850000e-115 425.0
23 TraesCS3D01G211800 chr1D 95.455 264 12 0 1620 1883 375851898 375851635 6.280000e-114 422.0
24 TraesCS3D01G211800 chr5D 95.076 264 13 0 1620 1883 83144520 83144783 2.920000e-112 416.0
25 TraesCS3D01G211800 chr5D 95.076 264 13 0 1620 1883 257351907 257351644 2.920000e-112 416.0
26 TraesCS3D01G211800 chr4A 94.757 267 14 0 1621 1887 18382749 18382483 2.920000e-112 416.0
27 TraesCS3D01G211800 chr4B 73.333 300 69 10 3159 3453 657166865 657166572 3.340000e-17 100.0
28 TraesCS3D01G211800 chr5B 97.222 36 0 1 430 464 126610023 126610058 5.670000e-05 60.2
29 TraesCS3D01G211800 chr5A 97.222 36 0 1 430 464 688610379 688610414 5.670000e-05 60.2
30 TraesCS3D01G211800 chr4D 97.222 36 0 1 430 464 27292543 27292508 5.670000e-05 60.2
31 TraesCS3D01G211800 chr1B 97.222 36 0 1 430 464 432109165 432109200 5.670000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G211800 chr3D 283313609 283318849 5240 False 9679.00 9679 100.000000 1 5241 1 chr3D.!!$F1 5240
1 TraesCS3D01G211800 chr3B 377422060 377426802 4742 False 2301.00 3923 90.258667 1 5241 3 chr3B.!!$F1 5240
2 TraesCS3D01G211800 chr3A 370237098 370243316 6218 False 1687.75 3760 93.801000 1 5241 4 chr3A.!!$F1 5240
3 TraesCS3D01G211800 chr6D 433476387 433477548 1161 True 767.00 767 78.851000 2632 3823 1 chr6D.!!$R1 1191
4 TraesCS3D01G211800 chr6A 579437700 579438864 1164 True 763.00 763 78.768000 2632 3823 1 chr6A.!!$R1 1191
5 TraesCS3D01G211800 chr6B 654733255 654734416 1161 True 761.00 761 78.732000 2632 3823 1 chr6B.!!$R1 1191
6 TraesCS3D01G211800 chr7A 108236436 108237641 1205 True 689.00 689 77.321000 2627 3823 1 chr7A.!!$R2 1196
7 TraesCS3D01G211800 chr7D 104090618 104091826 1208 True 688.00 688 77.239000 2627 3823 1 chr7D.!!$R1 1196
8 TraesCS3D01G211800 chr7B 61908939 61910141 1202 True 673.00 673 77.157000 2627 3820 1 chr7B.!!$R1 1193

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 405 0.469144 TTGTTTTCAGGCCCTGGACC 60.469 55.0 11.68 0.0 31.51 4.46 F
1578 1630 0.030235 CCATGCATGCATCCTTCGTG 59.970 55.0 30.07 18.2 33.90 4.35 F
1581 1633 0.036105 TGCATGCATCCTTCGTGTCT 60.036 50.0 18.46 0.0 0.00 3.41 F
1646 1699 0.037046 TCCGGTCCTTTTTACTCCGC 60.037 55.0 0.00 0.0 39.87 5.54 F
2546 2602 0.249573 TTCCTGCTTGCTTGCTTTGC 60.250 50.0 3.47 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 1680 0.037046 GCGGAGTAAAAAGGACCGGA 60.037 55.000 9.46 0.0 43.15 5.14 R
3016 3130 0.681564 GACTCTCGGAGAAGCCCTCA 60.682 60.000 9.32 0.0 43.76 3.86 R
3307 3430 1.667154 CCGAGATCCTGAACCGCTGA 61.667 60.000 0.00 0.0 0.00 4.26 R
3565 3688 2.126071 ATGTCCGACTTGACGCCG 60.126 61.111 0.00 0.0 38.11 6.46 R
4360 4924 0.109272 TCGATGCTGTTCGTCCTCAC 60.109 55.000 4.64 0.0 40.03 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
404 405 0.469144 TTGTTTTCAGGCCCTGGACC 60.469 55.000 11.68 0.00 31.51 4.46
421 422 5.335661 CCTGGACCAAGTATTTCCTTTTTCG 60.336 44.000 0.00 0.00 0.00 3.46
422 423 4.022676 TGGACCAAGTATTTCCTTTTTCGC 60.023 41.667 0.00 0.00 0.00 4.70
848 857 5.581085 GCGTGGATCTTGTATAGTTGAAGTT 59.419 40.000 0.00 0.00 0.00 2.66
1126 1136 3.979911 ACATTTGGCATCCATCCAACTA 58.020 40.909 0.00 0.00 42.75 2.24
1140 1150 1.539065 CCAACTAATCGGAGCATCGCT 60.539 52.381 0.00 0.00 43.88 4.93
1143 1153 0.668706 CTAATCGGAGCATCGCTGGG 60.669 60.000 0.00 0.00 39.88 4.45
1152 1162 1.572085 GCATCGCTGGGATCCATTCG 61.572 60.000 15.23 12.79 31.28 3.34
1154 1164 2.043604 ATCGCTGGGATCCATTCGCA 62.044 55.000 15.23 0.29 44.31 5.10
1372 1382 1.741770 CTCCTGCAGCCAACCGTAC 60.742 63.158 8.66 0.00 0.00 3.67
1373 1383 3.118454 CCTGCAGCCAACCGTACG 61.118 66.667 8.66 8.69 0.00 3.67
1374 1384 2.357034 CTGCAGCCAACCGTACGT 60.357 61.111 15.21 0.00 0.00 3.57
1375 1385 2.356553 TGCAGCCAACCGTACGTC 60.357 61.111 15.21 0.00 0.00 4.34
1410 1420 5.924356 TCTTCCGCCACATCATTCTTAATA 58.076 37.500 0.00 0.00 0.00 0.98
1446 1488 1.385743 CTAGTGCAACAACGTAGCGAC 59.614 52.381 0.00 0.00 41.43 5.19
1571 1623 0.316204 GGGTAAGCCATGCATGCATC 59.684 55.000 30.07 19.63 33.90 3.91
1573 1625 1.325355 GTAAGCCATGCATGCATCCT 58.675 50.000 30.07 24.02 33.90 3.24
1576 1628 1.007734 GCCATGCATGCATCCTTCG 60.008 57.895 30.07 17.94 33.90 3.79
1577 1629 1.731433 GCCATGCATGCATCCTTCGT 61.731 55.000 30.07 5.99 33.90 3.85
1578 1630 0.030235 CCATGCATGCATCCTTCGTG 59.970 55.000 30.07 18.20 33.90 4.35
1579 1631 0.736636 CATGCATGCATCCTTCGTGT 59.263 50.000 30.07 4.31 33.90 4.49
1580 1632 1.019673 ATGCATGCATCCTTCGTGTC 58.980 50.000 27.46 0.00 29.42 3.67
1581 1633 0.036105 TGCATGCATCCTTCGTGTCT 60.036 50.000 18.46 0.00 0.00 3.41
1582 1634 0.654683 GCATGCATCCTTCGTGTCTC 59.345 55.000 14.21 0.00 0.00 3.36
1627 1680 3.876274 CGTAGCATGCATATACTCCCT 57.124 47.619 21.98 0.00 0.00 4.20
1628 1681 3.775202 CGTAGCATGCATATACTCCCTC 58.225 50.000 21.98 0.00 0.00 4.30
1629 1682 3.429547 CGTAGCATGCATATACTCCCTCC 60.430 52.174 21.98 0.00 0.00 4.30
1630 1683 1.552337 AGCATGCATATACTCCCTCCG 59.448 52.381 21.98 0.00 0.00 4.63
1631 1684 1.406069 GCATGCATATACTCCCTCCGG 60.406 57.143 14.21 0.00 0.00 5.14
1632 1685 1.902508 CATGCATATACTCCCTCCGGT 59.097 52.381 0.00 0.00 0.00 5.28
1633 1686 1.629043 TGCATATACTCCCTCCGGTC 58.371 55.000 0.00 0.00 0.00 4.79
1634 1687 0.896226 GCATATACTCCCTCCGGTCC 59.104 60.000 0.00 0.00 0.00 4.46
1635 1688 1.550409 GCATATACTCCCTCCGGTCCT 60.550 57.143 0.00 0.00 0.00 3.85
1636 1689 2.890814 CATATACTCCCTCCGGTCCTT 58.109 52.381 0.00 0.00 0.00 3.36
1637 1690 3.240302 CATATACTCCCTCCGGTCCTTT 58.760 50.000 0.00 0.00 0.00 3.11
1638 1691 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
1639 1692 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
1640 1693 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1641 1694 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
1642 1695 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
1643 1696 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
1644 1697 1.065636 CCCTCCGGTCCTTTTTACTCC 60.066 57.143 0.00 0.00 0.00 3.85
1645 1698 1.405121 CCTCCGGTCCTTTTTACTCCG 60.405 57.143 0.00 0.00 40.72 4.63
1646 1699 0.037046 TCCGGTCCTTTTTACTCCGC 60.037 55.000 0.00 0.00 39.87 5.54
1647 1700 1.356527 CCGGTCCTTTTTACTCCGCG 61.357 60.000 0.00 0.00 39.87 6.46
1648 1701 0.668401 CGGTCCTTTTTACTCCGCGT 60.668 55.000 4.92 0.00 35.01 6.01
1649 1702 1.402720 CGGTCCTTTTTACTCCGCGTA 60.403 52.381 4.92 0.00 35.01 4.42
1650 1703 2.736400 CGGTCCTTTTTACTCCGCGTAT 60.736 50.000 4.92 0.00 35.01 3.06
1651 1704 2.606272 GGTCCTTTTTACTCCGCGTATG 59.394 50.000 4.92 0.00 0.00 2.39
1652 1705 3.514645 GTCCTTTTTACTCCGCGTATGA 58.485 45.455 4.92 0.00 0.00 2.15
1653 1706 3.550678 GTCCTTTTTACTCCGCGTATGAG 59.449 47.826 4.92 7.39 35.92 2.90
1654 1707 3.444742 TCCTTTTTACTCCGCGTATGAGA 59.555 43.478 16.27 0.00 33.95 3.27
1655 1708 4.082081 TCCTTTTTACTCCGCGTATGAGAA 60.082 41.667 16.27 5.18 33.95 2.87
1656 1709 4.809426 CCTTTTTACTCCGCGTATGAGAAT 59.191 41.667 16.27 0.00 33.95 2.40
1657 1710 5.293569 CCTTTTTACTCCGCGTATGAGAATT 59.706 40.000 16.27 0.00 33.95 2.17
1658 1711 5.712217 TTTTACTCCGCGTATGAGAATTG 57.288 39.130 16.27 0.00 33.95 2.32
1659 1712 2.961526 ACTCCGCGTATGAGAATTGT 57.038 45.000 16.27 0.00 33.95 2.71
1660 1713 2.810650 ACTCCGCGTATGAGAATTGTC 58.189 47.619 16.27 0.00 33.95 3.18
1661 1714 2.165641 ACTCCGCGTATGAGAATTGTCA 59.834 45.455 16.27 7.86 33.95 3.58
1662 1715 2.791560 CTCCGCGTATGAGAATTGTCAG 59.208 50.000 11.32 0.00 31.26 3.51
1663 1716 2.425668 TCCGCGTATGAGAATTGTCAGA 59.574 45.455 11.32 3.46 0.00 3.27
1664 1717 3.119280 TCCGCGTATGAGAATTGTCAGAA 60.119 43.478 11.32 0.00 0.00 3.02
1665 1718 3.243877 CCGCGTATGAGAATTGTCAGAAG 59.756 47.826 11.32 9.78 0.00 2.85
1666 1719 3.859961 CGCGTATGAGAATTGTCAGAAGT 59.140 43.478 11.32 0.00 0.00 3.01
1667 1720 4.027295 CGCGTATGAGAATTGTCAGAAGTC 60.027 45.833 11.32 4.91 0.00 3.01
1668 1721 4.864806 GCGTATGAGAATTGTCAGAAGTCA 59.135 41.667 11.32 0.00 0.00 3.41
1669 1722 5.348724 GCGTATGAGAATTGTCAGAAGTCAA 59.651 40.000 11.32 0.00 0.00 3.18
1670 1723 6.128553 GCGTATGAGAATTGTCAGAAGTCAAA 60.129 38.462 11.32 0.00 0.00 2.69
1671 1724 7.230222 CGTATGAGAATTGTCAGAAGTCAAAC 58.770 38.462 11.32 0.00 0.00 2.93
1672 1725 7.116948 CGTATGAGAATTGTCAGAAGTCAAACT 59.883 37.037 11.32 0.00 0.00 2.66
1673 1726 7.814264 ATGAGAATTGTCAGAAGTCAAACTT 57.186 32.000 11.32 0.00 41.95 2.66
1762 1815 8.627208 ATGAAAACTAAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
1763 1816 9.725019 ATGAAAACTAAAGTCATGACACATCTA 57.275 29.630 27.02 9.71 30.84 1.98
1764 1817 9.554395 TGAAAACTAAAGTCATGACACATCTAA 57.446 29.630 27.02 4.99 0.00 2.10
1767 1820 9.507329 AAACTAAAGTCATGACACATCTAATGT 57.493 29.630 27.02 10.10 46.22 2.71
1768 1821 9.507329 AACTAAAGTCATGACACATCTAATGTT 57.493 29.630 27.02 14.59 42.70 2.71
1769 1822 8.939929 ACTAAAGTCATGACACATCTAATGTTG 58.060 33.333 27.02 3.47 42.70 3.33
1770 1823 7.750229 AAAGTCATGACACATCTAATGTTGT 57.250 32.000 27.02 0.00 42.70 3.32
1771 1824 7.750229 AAGTCATGACACATCTAATGTTGTT 57.250 32.000 27.02 5.11 42.70 2.83
1772 1825 7.137490 AGTCATGACACATCTAATGTTGTTG 57.863 36.000 27.02 0.00 42.70 3.33
1773 1826 6.936335 AGTCATGACACATCTAATGTTGTTGA 59.064 34.615 27.02 0.00 42.70 3.18
1774 1827 7.609146 AGTCATGACACATCTAATGTTGTTGAT 59.391 33.333 27.02 0.00 42.70 2.57
1775 1828 8.239314 GTCATGACACATCTAATGTTGTTGATT 58.761 33.333 21.07 0.00 42.70 2.57
1776 1829 8.795513 TCATGACACATCTAATGTTGTTGATTT 58.204 29.630 0.00 0.00 42.70 2.17
1777 1830 9.414295 CATGACACATCTAATGTTGTTGATTTT 57.586 29.630 0.00 0.00 42.70 1.82
1778 1831 9.630098 ATGACACATCTAATGTTGTTGATTTTC 57.370 29.630 0.00 0.00 42.70 2.29
1779 1832 8.628280 TGACACATCTAATGTTGTTGATTTTCA 58.372 29.630 0.00 0.00 42.70 2.69
1780 1833 8.801715 ACACATCTAATGTTGTTGATTTTCAC 57.198 30.769 0.00 0.00 42.70 3.18
1781 1834 8.412456 ACACATCTAATGTTGTTGATTTTCACA 58.588 29.630 0.00 0.00 42.70 3.58
1782 1835 9.414295 CACATCTAATGTTGTTGATTTTCACAT 57.586 29.630 0.00 0.00 42.70 3.21
1783 1836 9.985730 ACATCTAATGTTGTTGATTTTCACATT 57.014 25.926 0.00 0.00 41.63 2.71
1786 1839 9.681692 TCTAATGTTGTTGATTTTCACATTCTG 57.318 29.630 0.00 0.00 0.00 3.02
1787 1840 9.681692 CTAATGTTGTTGATTTTCACATTCTGA 57.318 29.630 0.00 0.00 0.00 3.27
1788 1841 8.945481 AATGTTGTTGATTTTCACATTCTGAA 57.055 26.923 0.00 0.00 37.08 3.02
1789 1842 9.550406 AATGTTGTTGATTTTCACATTCTGAAT 57.450 25.926 0.00 0.00 38.74 2.57
1790 1843 8.355272 TGTTGTTGATTTTCACATTCTGAATG 57.645 30.769 24.79 24.79 44.48 2.67
1818 1871 9.504708 TGGTATTTTTCTTTATAAGTTCGGTCA 57.495 29.630 0.00 0.00 0.00 4.02
1827 1880 8.702438 TCTTTATAAGTTCGGTCAAAGTTTACG 58.298 33.333 0.00 0.00 0.00 3.18
1828 1881 8.586570 TTTATAAGTTCGGTCAAAGTTTACGA 57.413 30.769 0.00 5.46 0.00 3.43
1829 1882 6.701432 ATAAGTTCGGTCAAAGTTTACGAG 57.299 37.500 8.55 0.00 34.85 4.18
1830 1883 3.387397 AGTTCGGTCAAAGTTTACGAGG 58.613 45.455 8.55 0.00 34.85 4.63
1831 1884 3.126073 GTTCGGTCAAAGTTTACGAGGT 58.874 45.455 8.55 0.00 34.85 3.85
1832 1885 3.457610 TCGGTCAAAGTTTACGAGGTT 57.542 42.857 0.00 0.00 0.00 3.50
1833 1886 3.795877 TCGGTCAAAGTTTACGAGGTTT 58.204 40.909 0.00 0.00 0.00 3.27
1834 1887 3.556775 TCGGTCAAAGTTTACGAGGTTTG 59.443 43.478 0.00 0.00 0.00 2.93
1835 1888 3.303526 CGGTCAAAGTTTACGAGGTTTGG 60.304 47.826 0.00 0.00 31.97 3.28
1836 1889 3.549423 GGTCAAAGTTTACGAGGTTTGGC 60.549 47.826 0.00 0.00 34.46 4.52
1837 1890 3.314357 GTCAAAGTTTACGAGGTTTGGCT 59.686 43.478 0.00 0.00 32.86 4.75
1838 1891 3.949113 TCAAAGTTTACGAGGTTTGGCTT 59.051 39.130 0.00 0.00 31.97 4.35
1839 1892 4.035909 TCAAAGTTTACGAGGTTTGGCTTC 59.964 41.667 0.00 0.00 31.97 3.86
1840 1893 3.202829 AGTTTACGAGGTTTGGCTTCA 57.797 42.857 0.00 0.00 0.00 3.02
1841 1894 3.139077 AGTTTACGAGGTTTGGCTTCAG 58.861 45.455 0.00 0.00 0.00 3.02
1842 1895 3.135994 GTTTACGAGGTTTGGCTTCAGA 58.864 45.455 0.00 0.00 0.00 3.27
1843 1896 2.450609 TACGAGGTTTGGCTTCAGAC 57.549 50.000 0.00 0.00 0.00 3.51
1844 1897 0.468226 ACGAGGTTTGGCTTCAGACA 59.532 50.000 0.00 0.00 0.00 3.41
1845 1898 1.134220 ACGAGGTTTGGCTTCAGACAA 60.134 47.619 0.00 0.00 42.18 3.18
1855 1908 6.757897 TTGGCTTCAGACAAACCTTATATG 57.242 37.500 0.00 0.00 40.68 1.78
1856 1909 4.640201 TGGCTTCAGACAAACCTTATATGC 59.360 41.667 0.00 0.00 0.00 3.14
1857 1910 4.260784 GGCTTCAGACAAACCTTATATGCG 60.261 45.833 0.00 0.00 0.00 4.73
1858 1911 4.570772 GCTTCAGACAAACCTTATATGCGA 59.429 41.667 0.00 0.00 0.00 5.10
1859 1912 5.064707 GCTTCAGACAAACCTTATATGCGAA 59.935 40.000 0.00 0.00 0.00 4.70
1860 1913 6.417191 TTCAGACAAACCTTATATGCGAAC 57.583 37.500 0.00 0.00 0.00 3.95
1861 1914 5.730550 TCAGACAAACCTTATATGCGAACT 58.269 37.500 0.00 0.00 0.00 3.01
1862 1915 6.869695 TCAGACAAACCTTATATGCGAACTA 58.130 36.000 0.00 0.00 0.00 2.24
1863 1916 7.324935 TCAGACAAACCTTATATGCGAACTAA 58.675 34.615 0.00 0.00 0.00 2.24
1864 1917 7.820386 TCAGACAAACCTTATATGCGAACTAAA 59.180 33.333 0.00 0.00 0.00 1.85
1865 1918 8.447833 CAGACAAACCTTATATGCGAACTAAAA 58.552 33.333 0.00 0.00 0.00 1.52
1866 1919 9.005777 AGACAAACCTTATATGCGAACTAAAAA 57.994 29.630 0.00 0.00 0.00 1.94
1867 1920 9.274065 GACAAACCTTATATGCGAACTAAAAAG 57.726 33.333 0.00 0.00 0.00 2.27
1868 1921 8.241367 ACAAACCTTATATGCGAACTAAAAAGG 58.759 33.333 0.00 0.00 38.54 3.11
1869 1922 8.455682 CAAACCTTATATGCGAACTAAAAAGGA 58.544 33.333 4.87 0.00 36.56 3.36
1870 1923 7.549615 ACCTTATATGCGAACTAAAAAGGAC 57.450 36.000 4.87 0.00 36.56 3.85
1871 1924 6.541278 ACCTTATATGCGAACTAAAAAGGACC 59.459 38.462 4.87 0.00 36.56 4.46
1872 1925 6.292703 CCTTATATGCGAACTAAAAAGGACCG 60.293 42.308 0.00 0.00 35.34 4.79
1873 1926 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
1874 1927 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
1875 1928 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
2256 2309 1.574702 GCCCGACTTTTTGTCCTCCG 61.575 60.000 0.00 0.00 42.49 4.63
2460 2516 0.443869 CATGGACTTTGGCGAGAACG 59.556 55.000 0.00 0.00 42.93 3.95
2541 2597 0.807496 CTACCTTCCTGCTTGCTTGC 59.193 55.000 0.00 0.00 0.00 4.01
2542 2598 0.401738 TACCTTCCTGCTTGCTTGCT 59.598 50.000 3.47 0.00 0.00 3.91
2543 2599 0.468771 ACCTTCCTGCTTGCTTGCTT 60.469 50.000 3.47 0.00 0.00 3.91
2544 2600 0.677842 CCTTCCTGCTTGCTTGCTTT 59.322 50.000 3.47 0.00 0.00 3.51
2545 2601 1.604693 CCTTCCTGCTTGCTTGCTTTG 60.605 52.381 3.47 0.00 0.00 2.77
2546 2602 0.249573 TTCCTGCTTGCTTGCTTTGC 60.250 50.000 3.47 0.00 0.00 3.68
2547 2603 1.111116 TCCTGCTTGCTTGCTTTGCT 61.111 50.000 3.47 0.00 0.00 3.91
2548 2604 0.249741 CCTGCTTGCTTGCTTTGCTT 60.250 50.000 3.47 0.00 0.00 3.91
2549 2605 0.859232 CTGCTTGCTTGCTTTGCTTG 59.141 50.000 3.47 0.00 0.00 4.01
2571 2653 0.250727 TGCTGTTTCCTTCCTTCCCG 60.251 55.000 0.00 0.00 0.00 5.14
2578 2660 0.323999 TCCTTCCTTCCCGTCGATCA 60.324 55.000 0.00 0.00 0.00 2.92
2581 2663 2.474816 CTTCCTTCCCGTCGATCAATC 58.525 52.381 0.00 0.00 0.00 2.67
3016 3130 0.816018 ACGAGATCGAGATCGCCACT 60.816 55.000 18.72 0.62 42.61 4.00
3259 3373 1.377725 CATGGAGAACGGCAGCCTT 60.378 57.895 10.54 0.00 0.00 4.35
3565 3688 2.256461 CAGCAAACGGGCAAGCTC 59.744 61.111 0.00 0.00 34.61 4.09
3790 3913 3.341629 AGGGACCGACCGGACCTA 61.342 66.667 24.24 0.00 46.70 3.08
3850 3973 4.876701 GGCATCGCCTATGACCAA 57.123 55.556 0.00 0.00 46.69 3.67
3918 4053 3.681835 GGTCAGCTCACCGACGGT 61.682 66.667 15.37 15.37 35.62 4.83
4143 4282 1.859427 ATGTTTGCAGTGCTGGCTCG 61.859 55.000 17.60 0.00 0.00 5.03
4189 4328 5.998454 ACATCCATCGATTCAGAATGTTC 57.002 39.130 0.00 0.00 37.40 3.18
4210 4355 4.585879 TCTTTTTGGGCCTGTATACTGAC 58.414 43.478 4.53 0.00 0.00 3.51
4218 4363 5.900699 TGGGCCTGTATACTGACTTTACATA 59.099 40.000 4.53 0.00 0.00 2.29
4225 4370 7.262772 TGTATACTGACTTTACATACCACTGC 58.737 38.462 4.17 0.00 0.00 4.40
4250 4396 0.947180 TTTTCCTTCCCGAGAACGCG 60.947 55.000 3.53 3.53 38.29 6.01
4252 4398 2.758770 TTCCTTCCCGAGAACGCGTG 62.759 60.000 14.98 0.00 38.29 5.34
4259 4405 1.934956 CGAGAACGCGTGATCCGAG 60.935 63.158 14.98 6.75 42.55 4.63
4267 4413 2.815308 GTGATCCGAGCCCGTCAT 59.185 61.111 0.00 0.00 0.00 3.06
4271 4417 0.173708 GATCCGAGCCCGTCATATCC 59.826 60.000 0.00 0.00 0.00 2.59
4280 4426 2.760374 CCCGTCATATCCTCTGCTTTC 58.240 52.381 0.00 0.00 0.00 2.62
4283 4429 3.068732 CCGTCATATCCTCTGCTTTCTCA 59.931 47.826 0.00 0.00 0.00 3.27
4287 4435 5.526846 GTCATATCCTCTGCTTTCTCAAAGG 59.473 44.000 0.00 0.00 38.93 3.11
4324 4677 1.108727 TGTTGGAAAGGTGCTGCCAG 61.109 55.000 0.00 0.00 40.61 4.85
4327 4680 2.677875 GAAAGGTGCTGCCAGGGG 60.678 66.667 0.00 0.00 40.61 4.79
4352 4916 1.359459 GAAGCTGTAAACGGGGCGAG 61.359 60.000 0.00 0.00 0.00 5.03
4367 4931 4.131088 GAGGGGCGACGTGAGGAC 62.131 72.222 0.00 0.00 0.00 3.85
4401 4965 2.515996 CTAGAAAGCGGCCGGTTGGA 62.516 60.000 40.06 26.36 37.49 3.53
4447 5011 4.241555 GGAGCGGCCGGTGATGAT 62.242 66.667 37.70 0.00 0.00 2.45
4448 5012 2.969238 GAGCGGCCGGTGATGATG 60.969 66.667 37.70 0.00 0.00 3.07
4451 5015 3.274586 CGGCCGGTGATGATGCTG 61.275 66.667 20.10 0.00 0.00 4.41
4452 5016 3.589881 GGCCGGTGATGATGCTGC 61.590 66.667 1.90 0.00 0.00 5.25
4453 5017 2.825387 GCCGGTGATGATGCTGCA 60.825 61.111 4.13 4.13 0.00 4.41
4454 5018 2.409055 GCCGGTGATGATGCTGCAA 61.409 57.895 6.36 0.00 0.00 4.08
4455 5019 1.430632 CCGGTGATGATGCTGCAAC 59.569 57.895 6.36 4.29 0.00 4.17
4456 5020 1.430632 CGGTGATGATGCTGCAACC 59.569 57.895 6.36 8.48 0.00 3.77
4457 5021 1.811860 GGTGATGATGCTGCAACCC 59.188 57.895 6.36 0.00 0.00 4.11
4458 5022 1.669999 GGTGATGATGCTGCAACCCC 61.670 60.000 6.36 0.00 0.00 4.95
4459 5023 0.682209 GTGATGATGCTGCAACCCCT 60.682 55.000 6.36 0.00 0.00 4.79
4460 5024 0.681887 TGATGATGCTGCAACCCCTG 60.682 55.000 6.36 0.00 0.00 4.45
4461 5025 1.380785 ATGATGCTGCAACCCCTGG 60.381 57.895 6.36 0.00 0.00 4.45
4462 5026 1.866483 ATGATGCTGCAACCCCTGGA 61.866 55.000 6.36 0.00 0.00 3.86
4463 5027 2.036256 ATGCTGCAACCCCTGGAC 59.964 61.111 6.36 0.00 0.00 4.02
4464 5028 2.769652 GATGCTGCAACCCCTGGACA 62.770 60.000 6.36 0.00 0.00 4.02
4479 5043 2.847234 ACAGGGACGTTGGGAGCA 60.847 61.111 0.00 0.00 0.00 4.26
4488 5052 1.675641 GTTGGGAGCAGCCGACATT 60.676 57.895 0.00 0.00 37.63 2.71
4493 5057 1.354506 GAGCAGCCGACATTGATGC 59.645 57.895 0.00 0.00 37.15 3.91
4505 5069 0.107508 ATTGATGCTGGGACCGACAG 60.108 55.000 0.00 0.00 38.95 3.51
4529 5093 2.126071 ATGCTGGAACCGACGACG 60.126 61.111 0.00 0.00 39.43 5.12
4530 5094 2.814183 GATGCTGGAACCGACGACGT 62.814 60.000 0.00 0.00 37.88 4.34
4581 5145 1.635663 CGCCTGATGTTGGAACCGAC 61.636 60.000 4.40 4.40 0.00 4.79
4588 5152 0.389757 TGTTGGAACCGACGACATGA 59.610 50.000 0.00 0.00 33.16 3.07
4589 5153 1.068474 GTTGGAACCGACGACATGAG 58.932 55.000 0.00 0.00 0.00 2.90
4600 5164 0.376152 CGACATGAGTTGCTGCATCC 59.624 55.000 1.84 0.00 0.00 3.51
4604 5168 1.086067 ATGAGTTGCTGCATCCGACG 61.086 55.000 1.84 0.00 0.00 5.12
4646 5210 2.169789 CGCTGATTGCTGAGACCGG 61.170 63.158 0.00 0.00 40.11 5.28
4662 5226 1.433471 CGGCGACTCAGATGCTACA 59.567 57.895 0.00 0.00 0.00 2.74
4810 6061 2.919494 GCACTGGAAACGGCAAGGG 61.919 63.158 0.00 0.00 41.93 3.95
4828 6080 1.473434 GGGAAGGTGCTTCTATGGACG 60.473 57.143 0.00 0.00 40.07 4.79
4868 6133 4.383602 CGGCCAGCAACGAAACCG 62.384 66.667 2.24 0.00 0.00 4.44
4871 6136 3.283684 CCAGCAACGAAACCGGCA 61.284 61.111 0.00 0.00 0.00 5.69
4891 6161 0.038599 AGTGTGCTGCATGAATGGGA 59.961 50.000 5.27 0.00 0.00 4.37
4892 6162 0.889994 GTGTGCTGCATGAATGGGAA 59.110 50.000 5.27 0.00 0.00 3.97
4893 6163 0.889994 TGTGCTGCATGAATGGGAAC 59.110 50.000 5.27 0.00 0.00 3.62
4915 6185 1.948508 CAACGGCAAGCTACTGCAA 59.051 52.632 12.28 0.00 44.52 4.08
4929 6199 2.655044 GCAAGCGTTGTGTGGCAC 60.655 61.111 11.55 11.55 34.56 5.01
4930 6200 2.352229 CAAGCGTTGTGTGGCACG 60.352 61.111 13.77 1.11 37.14 5.34
4931 6201 4.250431 AAGCGTTGTGTGGCACGC 62.250 61.111 23.67 23.67 43.04 5.34
4933 6203 4.962122 GCGTTGTGTGGCACGCTG 62.962 66.667 29.13 19.94 41.15 5.18
4934 6204 3.572539 CGTTGTGTGGCACGCTGT 61.573 61.111 29.13 0.00 40.97 4.40
4935 6205 2.327940 GTTGTGTGGCACGCTGTC 59.672 61.111 29.13 16.36 40.97 3.51
4936 6206 3.268603 TTGTGTGGCACGCTGTCG 61.269 61.111 29.13 0.00 40.97 4.35
4980 6250 3.151022 GGGAGCAGGGGACGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
4981 6251 3.151022 GGAGCAGGGGACGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
5034 6305 2.223611 GCCGATCAAATCTGAGATGCAG 59.776 50.000 0.00 0.00 46.31 4.41
5035 6306 2.806818 CCGATCAAATCTGAGATGCAGG 59.193 50.000 0.00 0.00 44.98 4.85
5036 6307 2.806818 CGATCAAATCTGAGATGCAGGG 59.193 50.000 0.00 0.00 44.98 4.45
5037 6308 2.723322 TCAAATCTGAGATGCAGGGG 57.277 50.000 0.00 0.00 44.98 4.79
5038 6309 1.213678 TCAAATCTGAGATGCAGGGGG 59.786 52.381 0.00 0.00 44.98 5.40
5039 6310 1.213678 CAAATCTGAGATGCAGGGGGA 59.786 52.381 0.00 0.00 44.98 4.81
5040 6311 1.600058 AATCTGAGATGCAGGGGGAA 58.400 50.000 0.00 0.00 44.98 3.97
5041 6312 1.600058 ATCTGAGATGCAGGGGGAAA 58.400 50.000 0.00 0.00 44.98 3.13
5042 6313 0.914644 TCTGAGATGCAGGGGGAAAG 59.085 55.000 0.00 0.00 44.98 2.62
5043 6314 0.914644 CTGAGATGCAGGGGGAAAGA 59.085 55.000 0.00 0.00 41.07 2.52
5044 6315 0.914644 TGAGATGCAGGGGGAAAGAG 59.085 55.000 0.00 0.00 0.00 2.85
5045 6316 0.182299 GAGATGCAGGGGGAAAGAGG 59.818 60.000 0.00 0.00 0.00 3.69
5046 6317 0.253347 AGATGCAGGGGGAAAGAGGA 60.253 55.000 0.00 0.00 0.00 3.71
5047 6318 0.106967 GATGCAGGGGGAAAGAGGAC 60.107 60.000 0.00 0.00 0.00 3.85
5048 6319 1.915078 ATGCAGGGGGAAAGAGGACG 61.915 60.000 0.00 0.00 0.00 4.79
5049 6320 2.269241 CAGGGGGAAAGAGGACGC 59.731 66.667 0.00 0.00 0.00 5.19
5050 6321 2.203938 AGGGGGAAAGAGGACGCA 60.204 61.111 0.00 0.00 0.00 5.24
5051 6322 2.046217 GGGGGAAAGAGGACGCAC 60.046 66.667 0.00 0.00 0.00 5.34
5052 6323 2.747686 GGGGAAAGAGGACGCACA 59.252 61.111 0.00 0.00 0.00 4.57
5053 6324 1.671379 GGGGAAAGAGGACGCACAC 60.671 63.158 0.00 0.00 0.00 3.82
5055 6326 2.668280 GGAAAGAGGACGCACACGC 61.668 63.158 0.00 0.00 45.53 5.34
5074 6345 1.526917 GGGATCCAACGGCTGATGG 60.527 63.158 15.54 15.54 39.31 3.51
5118 6389 1.142748 GTGACCCATCTGAGCTCCG 59.857 63.158 12.15 4.74 0.00 4.63
5158 6638 6.762333 GCCTGATATTGGCCATTTTAGATTT 58.238 36.000 6.09 0.00 44.32 2.17
5209 6692 0.249955 TGCGACAGGATGCATCTCAA 59.750 50.000 25.28 4.93 42.53 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
404 405 7.018826 TGTATTCGCGAAAAAGGAAATACTTG 58.981 34.615 27.23 0.00 0.00 3.16
422 423 3.799035 GCATCCTTGCGTATTGTATTCG 58.201 45.455 0.00 0.00 39.49 3.34
848 857 6.183361 ACCAAACCTAAAATTAAACCATGGCA 60.183 34.615 13.04 0.00 0.00 4.92
1126 1136 1.762522 ATCCCAGCGATGCTCCGATT 61.763 55.000 0.00 0.00 36.40 3.34
1140 1150 1.224315 CCACTGCGAATGGATCCCA 59.776 57.895 9.90 0.00 39.87 4.37
1143 1153 1.017387 GGTTCCACTGCGAATGGATC 58.983 55.000 4.40 4.23 45.71 3.36
1152 1162 1.026182 TGCATCATCGGTTCCACTGC 61.026 55.000 0.00 0.00 0.00 4.40
1154 1164 0.107508 CCTGCATCATCGGTTCCACT 60.108 55.000 0.00 0.00 0.00 4.00
1373 1383 1.981533 CGGAAGAAAGTTACGACGGAC 59.018 52.381 0.00 0.00 0.00 4.79
1374 1384 1.666888 GCGGAAGAAAGTTACGACGGA 60.667 52.381 0.00 0.00 0.00 4.69
1375 1385 0.712222 GCGGAAGAAAGTTACGACGG 59.288 55.000 0.00 0.00 0.00 4.79
1410 1420 5.509498 TGCACTAGCTTTATGGGAGAAATT 58.491 37.500 0.00 0.00 42.74 1.82
1446 1488 1.647545 AATCCATCTGCGCAACACCG 61.648 55.000 13.05 0.00 0.00 4.94
1505 1553 3.393941 AGGGGACAAAGATCTCCATCATC 59.606 47.826 0.00 0.00 42.39 2.92
1571 1623 1.068194 GTGAGTGAGGAGACACGAAGG 60.068 57.143 0.00 0.00 44.35 3.46
1573 1625 1.880675 GAGTGAGTGAGGAGACACGAA 59.119 52.381 0.00 0.00 44.35 3.85
1576 1628 2.822561 TGATGAGTGAGTGAGGAGACAC 59.177 50.000 0.00 0.00 40.60 3.67
1577 1629 3.160679 TGATGAGTGAGTGAGGAGACA 57.839 47.619 0.00 0.00 0.00 3.41
1578 1630 3.675775 GCTTGATGAGTGAGTGAGGAGAC 60.676 52.174 0.00 0.00 0.00 3.36
1579 1631 2.495270 GCTTGATGAGTGAGTGAGGAGA 59.505 50.000 0.00 0.00 0.00 3.71
1580 1632 2.233186 TGCTTGATGAGTGAGTGAGGAG 59.767 50.000 0.00 0.00 0.00 3.69
1581 1633 2.028658 GTGCTTGATGAGTGAGTGAGGA 60.029 50.000 0.00 0.00 0.00 3.71
1582 1634 2.344950 GTGCTTGATGAGTGAGTGAGG 58.655 52.381 0.00 0.00 0.00 3.86
1626 1679 2.005560 GCGGAGTAAAAAGGACCGGAG 61.006 57.143 9.46 0.00 43.15 4.63
1627 1680 0.037046 GCGGAGTAAAAAGGACCGGA 60.037 55.000 9.46 0.00 43.15 5.14
1628 1681 1.356527 CGCGGAGTAAAAAGGACCGG 61.357 60.000 0.00 0.00 43.15 5.28
1629 1682 0.668401 ACGCGGAGTAAAAAGGACCG 60.668 55.000 12.47 0.00 45.26 4.79
1630 1683 2.368655 TACGCGGAGTAAAAAGGACC 57.631 50.000 12.47 0.00 31.26 4.46
1631 1684 3.514645 TCATACGCGGAGTAAAAAGGAC 58.485 45.455 12.47 0.00 39.04 3.85
1632 1685 3.444742 TCTCATACGCGGAGTAAAAAGGA 59.555 43.478 12.47 0.00 39.04 3.36
1633 1686 3.777478 TCTCATACGCGGAGTAAAAAGG 58.223 45.455 12.47 0.00 39.04 3.11
1634 1687 5.968387 ATTCTCATACGCGGAGTAAAAAG 57.032 39.130 12.47 0.00 39.04 2.27
1635 1688 5.640357 ACAATTCTCATACGCGGAGTAAAAA 59.360 36.000 12.47 0.00 39.04 1.94
1636 1689 5.172934 ACAATTCTCATACGCGGAGTAAAA 58.827 37.500 12.47 0.00 39.04 1.52
1637 1690 4.751060 ACAATTCTCATACGCGGAGTAAA 58.249 39.130 12.47 0.00 39.04 2.01
1638 1691 4.142337 TGACAATTCTCATACGCGGAGTAA 60.142 41.667 12.47 4.85 39.04 2.24
1639 1692 3.379057 TGACAATTCTCATACGCGGAGTA 59.621 43.478 12.47 1.44 40.03 2.59
1640 1693 2.165641 TGACAATTCTCATACGCGGAGT 59.834 45.455 12.47 0.00 34.04 3.85
1641 1694 2.791560 CTGACAATTCTCATACGCGGAG 59.208 50.000 12.47 7.90 0.00 4.63
1642 1695 2.425668 TCTGACAATTCTCATACGCGGA 59.574 45.455 12.47 0.00 0.00 5.54
1643 1696 2.809446 TCTGACAATTCTCATACGCGG 58.191 47.619 12.47 0.00 0.00 6.46
1644 1697 3.859961 ACTTCTGACAATTCTCATACGCG 59.140 43.478 3.53 3.53 0.00 6.01
1645 1698 4.864806 TGACTTCTGACAATTCTCATACGC 59.135 41.667 0.00 0.00 0.00 4.42
1646 1699 6.951256 TTGACTTCTGACAATTCTCATACG 57.049 37.500 0.00 0.00 0.00 3.06
1647 1700 8.316640 AGTTTGACTTCTGACAATTCTCATAC 57.683 34.615 0.00 0.00 0.00 2.39
1648 1701 8.908786 AAGTTTGACTTCTGACAATTCTCATA 57.091 30.769 0.00 0.00 31.77 2.15
1649 1702 7.814264 AAGTTTGACTTCTGACAATTCTCAT 57.186 32.000 0.00 0.00 31.77 2.90
1736 1789 9.725019 AGATGTGTCATGACTTTAGTTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
1737 1790 8.627208 AGATGTGTCATGACTTTAGTTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
1738 1791 9.554395 TTAGATGTGTCATGACTTTAGTTTTCA 57.446 29.630 25.55 11.05 0.00 2.69
1741 1794 9.507329 ACATTAGATGTGTCATGACTTTAGTTT 57.493 29.630 25.55 8.77 43.01 2.66
1742 1795 9.507329 AACATTAGATGTGTCATGACTTTAGTT 57.493 29.630 25.55 14.08 44.07 2.24
1743 1796 8.939929 CAACATTAGATGTGTCATGACTTTAGT 58.060 33.333 25.55 10.85 44.07 2.24
1744 1797 8.939929 ACAACATTAGATGTGTCATGACTTTAG 58.060 33.333 25.55 9.04 44.07 1.85
1745 1798 8.846943 ACAACATTAGATGTGTCATGACTTTA 57.153 30.769 25.55 12.62 44.07 1.85
1746 1799 7.750229 ACAACATTAGATGTGTCATGACTTT 57.250 32.000 25.55 10.94 44.07 2.66
1747 1800 7.445096 TCAACAACATTAGATGTGTCATGACTT 59.555 33.333 25.55 11.29 44.07 3.01
1748 1801 6.936335 TCAACAACATTAGATGTGTCATGACT 59.064 34.615 25.55 6.60 44.07 3.41
1749 1802 7.132694 TCAACAACATTAGATGTGTCATGAC 57.867 36.000 19.27 19.27 44.07 3.06
1750 1803 7.926674 ATCAACAACATTAGATGTGTCATGA 57.073 32.000 0.00 0.00 44.07 3.07
1751 1804 8.975410 AAATCAACAACATTAGATGTGTCATG 57.025 30.769 0.00 0.00 44.07 3.07
1752 1805 9.630098 GAAAATCAACAACATTAGATGTGTCAT 57.370 29.630 0.00 0.00 44.07 3.06
1753 1806 8.628280 TGAAAATCAACAACATTAGATGTGTCA 58.372 29.630 0.00 0.00 44.07 3.58
1754 1807 8.905702 GTGAAAATCAACAACATTAGATGTGTC 58.094 33.333 0.00 0.00 44.07 3.67
1755 1808 8.412456 TGTGAAAATCAACAACATTAGATGTGT 58.588 29.630 0.00 0.00 44.07 3.72
1756 1809 8.800231 TGTGAAAATCAACAACATTAGATGTG 57.200 30.769 0.00 0.00 44.07 3.21
1760 1813 9.681692 CAGAATGTGAAAATCAACAACATTAGA 57.318 29.630 0.00 0.00 0.00 2.10
1761 1814 9.681692 TCAGAATGTGAAAATCAACAACATTAG 57.318 29.630 0.00 0.00 37.40 1.73
1763 1816 8.945481 TTCAGAATGTGAAAATCAACAACATT 57.055 26.923 0.00 0.00 42.49 2.71
1792 1845 9.504708 TGACCGAACTTATAAAGAAAAATACCA 57.495 29.630 0.00 0.00 0.00 3.25
1801 1854 8.702438 CGTAAACTTTGACCGAACTTATAAAGA 58.298 33.333 0.00 0.00 0.00 2.52
1802 1855 8.702438 TCGTAAACTTTGACCGAACTTATAAAG 58.298 33.333 0.00 0.00 0.00 1.85
1803 1856 8.586570 TCGTAAACTTTGACCGAACTTATAAA 57.413 30.769 0.00 0.00 0.00 1.40
1804 1857 7.329226 CCTCGTAAACTTTGACCGAACTTATAA 59.671 37.037 0.00 0.00 0.00 0.98
1805 1858 6.808212 CCTCGTAAACTTTGACCGAACTTATA 59.192 38.462 0.00 0.00 0.00 0.98
1806 1859 5.636543 CCTCGTAAACTTTGACCGAACTTAT 59.363 40.000 0.00 0.00 0.00 1.73
1807 1860 4.984161 CCTCGTAAACTTTGACCGAACTTA 59.016 41.667 0.00 0.00 0.00 2.24
1808 1861 3.805971 CCTCGTAAACTTTGACCGAACTT 59.194 43.478 0.00 0.00 0.00 2.66
1809 1862 3.181472 ACCTCGTAAACTTTGACCGAACT 60.181 43.478 0.00 0.00 0.00 3.01
1810 1863 3.126073 ACCTCGTAAACTTTGACCGAAC 58.874 45.455 0.00 0.00 0.00 3.95
1811 1864 3.457610 ACCTCGTAAACTTTGACCGAA 57.542 42.857 0.00 0.00 0.00 4.30
1812 1865 3.457610 AACCTCGTAAACTTTGACCGA 57.542 42.857 0.00 0.00 0.00 4.69
1813 1866 3.303526 CCAAACCTCGTAAACTTTGACCG 60.304 47.826 0.00 0.00 0.00 4.79
1814 1867 3.549423 GCCAAACCTCGTAAACTTTGACC 60.549 47.826 0.00 0.00 0.00 4.02
1815 1868 3.314357 AGCCAAACCTCGTAAACTTTGAC 59.686 43.478 0.00 0.00 0.00 3.18
1816 1869 3.547746 AGCCAAACCTCGTAAACTTTGA 58.452 40.909 0.00 0.00 0.00 2.69
1817 1870 3.982576 AGCCAAACCTCGTAAACTTTG 57.017 42.857 0.00 0.00 0.00 2.77
1818 1871 3.949113 TGAAGCCAAACCTCGTAAACTTT 59.051 39.130 0.00 0.00 0.00 2.66
1819 1872 3.547746 TGAAGCCAAACCTCGTAAACTT 58.452 40.909 0.00 0.00 0.00 2.66
1820 1873 3.139077 CTGAAGCCAAACCTCGTAAACT 58.861 45.455 0.00 0.00 0.00 2.66
1821 1874 3.059120 GTCTGAAGCCAAACCTCGTAAAC 60.059 47.826 0.00 0.00 0.00 2.01
1822 1875 3.135994 GTCTGAAGCCAAACCTCGTAAA 58.864 45.455 0.00 0.00 0.00 2.01
1823 1876 2.103432 TGTCTGAAGCCAAACCTCGTAA 59.897 45.455 0.00 0.00 0.00 3.18
1824 1877 1.689813 TGTCTGAAGCCAAACCTCGTA 59.310 47.619 0.00 0.00 0.00 3.43
1825 1878 0.468226 TGTCTGAAGCCAAACCTCGT 59.532 50.000 0.00 0.00 0.00 4.18
1826 1879 1.593196 TTGTCTGAAGCCAAACCTCG 58.407 50.000 0.00 0.00 0.00 4.63
1827 1880 3.355626 GTTTGTCTGAAGCCAAACCTC 57.644 47.619 5.82 0.00 42.80 3.85
1830 1883 3.801114 AAGGTTTGTCTGAAGCCAAAC 57.199 42.857 8.14 8.14 46.06 2.93
1831 1884 6.350110 GCATATAAGGTTTGTCTGAAGCCAAA 60.350 38.462 0.00 0.00 0.00 3.28
1832 1885 5.125417 GCATATAAGGTTTGTCTGAAGCCAA 59.875 40.000 0.00 0.00 0.00 4.52
1833 1886 4.640201 GCATATAAGGTTTGTCTGAAGCCA 59.360 41.667 0.00 0.00 0.00 4.75
1834 1887 4.260784 CGCATATAAGGTTTGTCTGAAGCC 60.261 45.833 0.00 0.00 0.00 4.35
1835 1888 4.570772 TCGCATATAAGGTTTGTCTGAAGC 59.429 41.667 0.00 0.00 0.00 3.86
1836 1889 6.313905 AGTTCGCATATAAGGTTTGTCTGAAG 59.686 38.462 0.00 0.00 0.00 3.02
1837 1890 6.170506 AGTTCGCATATAAGGTTTGTCTGAA 58.829 36.000 0.00 0.00 0.00 3.02
1838 1891 5.730550 AGTTCGCATATAAGGTTTGTCTGA 58.269 37.500 0.00 0.00 0.00 3.27
1839 1892 7.534085 TTAGTTCGCATATAAGGTTTGTCTG 57.466 36.000 0.00 0.00 0.00 3.51
1840 1893 8.556213 TTTTAGTTCGCATATAAGGTTTGTCT 57.444 30.769 0.00 0.00 0.00 3.41
1841 1894 9.274065 CTTTTTAGTTCGCATATAAGGTTTGTC 57.726 33.333 0.00 0.00 0.00 3.18
1842 1895 8.241367 CCTTTTTAGTTCGCATATAAGGTTTGT 58.759 33.333 0.00 0.00 0.00 2.83
1843 1896 8.455682 TCCTTTTTAGTTCGCATATAAGGTTTG 58.544 33.333 0.00 0.00 34.10 2.93
1844 1897 8.456471 GTCCTTTTTAGTTCGCATATAAGGTTT 58.544 33.333 0.00 0.00 34.10 3.27
1845 1898 7.066645 GGTCCTTTTTAGTTCGCATATAAGGTT 59.933 37.037 0.00 0.00 34.10 3.50
1846 1899 6.541278 GGTCCTTTTTAGTTCGCATATAAGGT 59.459 38.462 0.00 0.00 34.10 3.50
1847 1900 6.292703 CGGTCCTTTTTAGTTCGCATATAAGG 60.293 42.308 0.00 0.00 33.79 2.69
1848 1901 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
1849 1902 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
1850 1903 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
1851 1904 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
1852 1905 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
1853 1906 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
1854 1907 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
1855 1908 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
1856 1909 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
1857 1910 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
1858 1911 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
1859 1912 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
1860 1913 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
1861 1914 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1862 1915 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
1863 1916 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
1864 1917 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
1865 1918 1.064091 GTAGTACTCCCTCCGGTCCTT 60.064 57.143 0.00 0.00 0.00 3.36
1866 1919 0.550432 GTAGTACTCCCTCCGGTCCT 59.450 60.000 0.00 0.00 0.00 3.85
1867 1920 0.257039 TGTAGTACTCCCTCCGGTCC 59.743 60.000 0.00 0.00 0.00 4.46
1868 1921 2.361643 ATGTAGTACTCCCTCCGGTC 57.638 55.000 0.00 0.00 0.00 4.79
1869 1922 2.107901 CCTATGTAGTACTCCCTCCGGT 59.892 54.545 0.00 0.00 0.00 5.28
1870 1923 2.374504 TCCTATGTAGTACTCCCTCCGG 59.625 54.545 0.00 0.00 0.00 5.14
1871 1924 3.072768 ACTCCTATGTAGTACTCCCTCCG 59.927 52.174 0.00 0.00 0.00 4.63
1872 1925 4.727792 ACTCCTATGTAGTACTCCCTCC 57.272 50.000 0.00 0.00 0.00 4.30
1873 1926 5.310331 ACCTACTCCTATGTAGTACTCCCTC 59.690 48.000 0.00 0.00 38.49 4.30
1874 1927 5.233939 ACCTACTCCTATGTAGTACTCCCT 58.766 45.833 0.00 0.00 38.49 4.20
1875 1928 5.581350 ACCTACTCCTATGTAGTACTCCC 57.419 47.826 0.00 0.00 38.49 4.30
1876 1929 5.241285 GCAACCTACTCCTATGTAGTACTCC 59.759 48.000 0.00 0.00 38.49 3.85
1877 1930 6.016943 CAGCAACCTACTCCTATGTAGTACTC 60.017 46.154 0.00 0.00 38.49 2.59
1878 1931 5.828859 CAGCAACCTACTCCTATGTAGTACT 59.171 44.000 0.00 0.00 38.49 2.73
1879 1932 5.826737 TCAGCAACCTACTCCTATGTAGTAC 59.173 44.000 0.00 0.00 38.49 2.73
1880 1933 6.009908 TCAGCAACCTACTCCTATGTAGTA 57.990 41.667 0.00 0.00 38.49 1.82
1881 1934 4.868268 TCAGCAACCTACTCCTATGTAGT 58.132 43.478 0.00 0.00 38.49 2.73
1882 1935 5.221342 CCTTCAGCAACCTACTCCTATGTAG 60.221 48.000 0.00 0.00 39.52 2.74
1883 1936 4.649674 CCTTCAGCAACCTACTCCTATGTA 59.350 45.833 0.00 0.00 0.00 2.29
1884 1937 3.452627 CCTTCAGCAACCTACTCCTATGT 59.547 47.826 0.00 0.00 0.00 2.29
1885 1938 3.706594 TCCTTCAGCAACCTACTCCTATG 59.293 47.826 0.00 0.00 0.00 2.23
2541 2597 1.862827 GGAAACAGCAAGCAAGCAAAG 59.137 47.619 3.19 0.00 36.85 2.77
2542 2598 1.481772 AGGAAACAGCAAGCAAGCAAA 59.518 42.857 3.19 0.00 36.85 3.68
2543 2599 1.113788 AGGAAACAGCAAGCAAGCAA 58.886 45.000 3.19 0.00 36.85 3.91
2544 2600 1.067516 GAAGGAAACAGCAAGCAAGCA 59.932 47.619 3.19 0.00 36.85 3.91
2545 2601 1.603931 GGAAGGAAACAGCAAGCAAGC 60.604 52.381 0.00 0.00 0.00 4.01
2546 2602 1.959282 AGGAAGGAAACAGCAAGCAAG 59.041 47.619 0.00 0.00 0.00 4.01
2547 2603 2.071778 AGGAAGGAAACAGCAAGCAA 57.928 45.000 0.00 0.00 0.00 3.91
2548 2604 1.956477 GAAGGAAGGAAACAGCAAGCA 59.044 47.619 0.00 0.00 0.00 3.91
2549 2605 1.270826 GGAAGGAAGGAAACAGCAAGC 59.729 52.381 0.00 0.00 0.00 4.01
2571 2653 2.603892 GCACATGCATGGATTGATCGAC 60.604 50.000 29.41 3.55 41.59 4.20
2578 2660 2.662866 AGCTAAGCACATGCATGGATT 58.337 42.857 29.41 23.03 45.16 3.01
2581 2663 2.947652 ACTAAGCTAAGCACATGCATGG 59.052 45.455 29.41 19.00 45.16 3.66
3016 3130 0.681564 GACTCTCGGAGAAGCCCTCA 60.682 60.000 9.32 0.00 43.76 3.86
3259 3373 3.066190 CGGTACAGGCGGTCCTCA 61.066 66.667 0.00 0.00 41.93 3.86
3307 3430 1.667154 CCGAGATCCTGAACCGCTGA 61.667 60.000 0.00 0.00 0.00 4.26
3565 3688 2.126071 ATGTCCGACTTGACGCCG 60.126 61.111 0.00 0.00 38.11 6.46
3823 3946 1.745489 GGCGATGCCGAGGTTTCTT 60.745 57.895 0.00 0.00 39.62 2.52
3935 4070 2.799540 GCTAGCTTTCCGCCGTTCG 61.800 63.158 7.70 0.00 40.39 3.95
3962 4097 3.181169 GACAACCCTGTGTGTGCGC 62.181 63.158 0.00 0.00 35.30 6.09
3964 4099 2.024918 CAGACAACCCTGTGTGTGC 58.975 57.895 0.00 0.00 40.95 4.57
4189 4328 4.589908 AGTCAGTATACAGGCCCAAAAAG 58.410 43.478 5.50 0.00 0.00 2.27
4210 4355 3.866651 AGAGCAGCAGTGGTATGTAAAG 58.133 45.455 0.00 0.00 33.41 1.85
4218 4363 0.475906 AGGAAAAGAGCAGCAGTGGT 59.524 50.000 0.00 0.00 37.01 4.16
4225 4370 1.276421 TCTCGGGAAGGAAAAGAGCAG 59.724 52.381 0.00 0.00 0.00 4.24
4250 4396 0.603569 ATATGACGGGCTCGGATCAC 59.396 55.000 12.42 0.00 41.39 3.06
4252 4398 0.173708 GGATATGACGGGCTCGGATC 59.826 60.000 12.42 7.42 41.39 3.36
4259 4405 0.394565 AAGCAGAGGATATGACGGGC 59.605 55.000 0.00 0.00 0.00 6.13
4267 4413 3.264193 TGCCTTTGAGAAAGCAGAGGATA 59.736 43.478 5.26 0.00 41.40 2.59
4271 4417 2.030451 GGTTGCCTTTGAGAAAGCAGAG 60.030 50.000 0.00 0.00 37.18 3.35
4280 4426 1.114722 TTGCCCTGGTTGCCTTTGAG 61.115 55.000 0.00 0.00 0.00 3.02
4283 4429 0.690744 AGTTTGCCCTGGTTGCCTTT 60.691 50.000 0.00 0.00 0.00 3.11
4287 4435 1.618343 ACAATAGTTTGCCCTGGTTGC 59.382 47.619 0.00 0.00 36.22 4.17
4324 4677 3.622060 TTACAGCTTCAGCCGCCCC 62.622 63.158 0.00 0.00 43.38 5.80
4327 4680 1.132640 CGTTTACAGCTTCAGCCGC 59.867 57.895 0.00 0.00 43.38 6.53
4328 4681 1.635663 CCCGTTTACAGCTTCAGCCG 61.636 60.000 0.00 0.00 43.38 5.52
4330 4683 1.923227 GCCCCGTTTACAGCTTCAGC 61.923 60.000 0.00 0.00 42.49 4.26
4331 4684 1.635663 CGCCCCGTTTACAGCTTCAG 61.636 60.000 0.00 0.00 0.00 3.02
4332 4685 1.669760 CGCCCCGTTTACAGCTTCA 60.670 57.895 0.00 0.00 0.00 3.02
4333 4686 1.359459 CTCGCCCCGTTTACAGCTTC 61.359 60.000 0.00 0.00 0.00 3.86
4336 4689 2.818274 CCTCGCCCCGTTTACAGC 60.818 66.667 0.00 0.00 0.00 4.40
4357 4921 0.388649 ATGCTGTTCGTCCTCACGTC 60.389 55.000 0.00 0.00 46.76 4.34
4358 4922 0.388649 GATGCTGTTCGTCCTCACGT 60.389 55.000 0.00 0.00 46.76 4.49
4360 4924 0.109272 TCGATGCTGTTCGTCCTCAC 60.109 55.000 4.64 0.00 40.03 3.51
4361 4925 0.817654 ATCGATGCTGTTCGTCCTCA 59.182 50.000 0.00 0.00 40.03 3.86
4362 4926 1.203928 CATCGATGCTGTTCGTCCTC 58.796 55.000 13.37 0.00 40.03 3.71
4363 4927 3.352447 CATCGATGCTGTTCGTCCT 57.648 52.632 13.37 0.00 40.03 3.85
4386 4950 3.292159 GTTCCAACCGGCCGCTTT 61.292 61.111 22.85 12.50 0.00 3.51
4401 4965 2.906897 CCCTGTGGTTGCAGCGTT 60.907 61.111 0.00 0.00 35.28 4.84
4431 4995 2.969238 CATCATCACCGGCCGCTC 60.969 66.667 22.85 0.00 0.00 5.03
4434 4998 3.274586 CAGCATCATCACCGGCCG 61.275 66.667 21.04 21.04 0.00 6.13
4443 5007 1.380785 CCAGGGGTTGCAGCATCAT 60.381 57.895 2.05 0.00 0.00 2.45
4444 5008 2.036098 CCAGGGGTTGCAGCATCA 59.964 61.111 2.05 0.00 0.00 3.07
4445 5009 2.048603 GTCCAGGGGTTGCAGCATC 61.049 63.158 2.05 0.00 0.00 3.91
4446 5010 2.036256 GTCCAGGGGTTGCAGCAT 59.964 61.111 2.05 0.00 0.00 3.79
4447 5011 3.496309 CTGTCCAGGGGTTGCAGCA 62.496 63.158 2.05 0.00 0.00 4.41
4448 5012 2.674380 CTGTCCAGGGGTTGCAGC 60.674 66.667 0.00 0.00 0.00 5.25
4449 5013 2.034687 CCTGTCCAGGGGTTGCAG 59.965 66.667 5.37 0.00 44.87 4.41
4458 5022 2.172483 CTCCCAACGTCCCTGTCCAG 62.172 65.000 0.00 0.00 0.00 3.86
4459 5023 2.122769 TCCCAACGTCCCTGTCCA 60.123 61.111 0.00 0.00 0.00 4.02
4460 5024 2.663196 CTCCCAACGTCCCTGTCC 59.337 66.667 0.00 0.00 0.00 4.02
4461 5025 2.047179 GCTCCCAACGTCCCTGTC 60.047 66.667 0.00 0.00 0.00 3.51
4462 5026 2.847234 TGCTCCCAACGTCCCTGT 60.847 61.111 0.00 0.00 0.00 4.00
4463 5027 2.046892 CTGCTCCCAACGTCCCTG 60.047 66.667 0.00 0.00 0.00 4.45
4464 5028 4.021925 GCTGCTCCCAACGTCCCT 62.022 66.667 0.00 0.00 0.00 4.20
4469 5033 3.958147 ATGTCGGCTGCTCCCAACG 62.958 63.158 0.00 0.00 0.00 4.10
4471 5035 1.675310 CAATGTCGGCTGCTCCCAA 60.675 57.895 0.00 0.00 0.00 4.12
4479 5043 1.452651 CCCAGCATCAATGTCGGCT 60.453 57.895 0.00 0.00 36.99 5.52
4488 5052 2.981302 CTGTCGGTCCCAGCATCA 59.019 61.111 0.00 0.00 0.00 3.07
4511 5075 2.158959 CGTCGTCGGTTCCAGCATC 61.159 63.158 0.00 0.00 0.00 3.91
4529 5093 1.589716 CCTAGCTTGCAGCAACCCAC 61.590 60.000 2.83 0.00 45.56 4.61
4530 5094 1.303561 CCTAGCTTGCAGCAACCCA 60.304 57.895 2.83 0.00 45.56 4.51
4552 5116 2.515523 ATCAGGCGCTGTCATGGC 60.516 61.111 7.64 0.00 32.61 4.40
4561 5125 2.877691 GGTTCCAACATCAGGCGC 59.122 61.111 0.00 0.00 0.00 6.53
4581 5145 0.376152 GGATGCAGCAACTCATGTCG 59.624 55.000 3.51 0.00 0.00 4.35
4588 5152 1.446792 CTCGTCGGATGCAGCAACT 60.447 57.895 3.51 0.00 0.00 3.16
4589 5153 2.456119 CCTCGTCGGATGCAGCAAC 61.456 63.158 3.51 0.00 33.16 4.17
4600 5164 0.389817 TCCAGCAATTGACCTCGTCG 60.390 55.000 10.34 0.00 34.95 5.12
4604 5168 0.804989 CGGTTCCAGCAATTGACCTC 59.195 55.000 10.34 0.00 0.00 3.85
4646 5210 1.135139 TCCTTGTAGCATCTGAGTCGC 59.865 52.381 0.00 0.00 0.00 5.19
4648 5212 3.559242 GCAATCCTTGTAGCATCTGAGTC 59.441 47.826 0.00 0.00 0.00 3.36
4662 5226 0.107017 CATCGGTCCCAGCAATCCTT 60.107 55.000 0.00 0.00 0.00 3.36
4710 5274 1.069765 CACACCTTGCCGTCTCAGT 59.930 57.895 0.00 0.00 0.00 3.41
4758 5322 2.434884 CAGCATCAGGTCGCCGTT 60.435 61.111 0.00 0.00 0.00 4.44
4810 6061 2.094182 TGTCGTCCATAGAAGCACCTTC 60.094 50.000 0.00 0.00 40.45 3.46
4828 6080 0.179108 CCAGTAGTAGCGGCCTTGTC 60.179 60.000 0.00 0.00 0.00 3.18
4871 6136 0.892755 CCCATTCATGCAGCACACTT 59.107 50.000 0.00 0.00 0.00 3.16
4886 6156 2.676471 GCCGTTGCCAGTTCCCAT 60.676 61.111 0.00 0.00 0.00 4.00
4891 6161 1.228124 TAGCTTGCCGTTGCCAGTT 60.228 52.632 0.00 0.00 36.33 3.16
4892 6162 1.966451 GTAGCTTGCCGTTGCCAGT 60.966 57.895 0.00 0.00 36.33 4.00
4893 6163 1.672356 AGTAGCTTGCCGTTGCCAG 60.672 57.895 0.00 0.00 36.33 4.85
4909 6179 3.110139 CCACACAACGCTTGCAGT 58.890 55.556 0.00 0.00 0.00 4.40
4931 6201 4.803426 GGAGGCTGACGGCGACAG 62.803 72.222 29.85 29.85 42.94 3.51
4980 6250 3.606687 ACGAGAAATAATCCCACACACC 58.393 45.455 0.00 0.00 0.00 4.16
4981 6251 5.390613 CAAACGAGAAATAATCCCACACAC 58.609 41.667 0.00 0.00 0.00 3.82
5034 6305 2.046217 GTGCGTCCTCTTTCCCCC 60.046 66.667 0.00 0.00 0.00 5.40
5035 6306 1.671379 GTGTGCGTCCTCTTTCCCC 60.671 63.158 0.00 0.00 0.00 4.81
5036 6307 2.027625 CGTGTGCGTCCTCTTTCCC 61.028 63.158 0.00 0.00 0.00 3.97
5037 6308 2.668280 GCGTGTGCGTCCTCTTTCC 61.668 63.158 0.00 0.00 40.81 3.13
5038 6309 2.853914 GCGTGTGCGTCCTCTTTC 59.146 61.111 0.00 0.00 40.81 2.62
5048 6319 3.799755 GTTGGATCCCGCGTGTGC 61.800 66.667 9.90 0.00 37.91 4.57
5049 6320 3.487202 CGTTGGATCCCGCGTGTG 61.487 66.667 9.90 0.00 0.00 3.82
5050 6321 4.752879 CCGTTGGATCCCGCGTGT 62.753 66.667 19.28 0.00 0.00 4.49
5054 6325 3.757248 ATCAGCCGTTGGATCCCGC 62.757 63.158 9.90 5.70 0.00 6.13
5055 6326 1.889105 CATCAGCCGTTGGATCCCG 60.889 63.158 9.90 6.34 0.00 5.14
5138 6409 9.252962 CAACTCAAATCTAAAATGGCCAATATC 57.747 33.333 10.96 0.00 0.00 1.63
5139 6410 8.980596 TCAACTCAAATCTAAAATGGCCAATAT 58.019 29.630 10.96 0.16 0.00 1.28
5140 6411 8.250332 GTCAACTCAAATCTAAAATGGCCAATA 58.750 33.333 10.96 2.43 0.00 1.90
5158 6638 5.059161 GCATTAGCCTATCATGTCAACTCA 58.941 41.667 0.00 0.00 33.58 3.41
5209 6692 4.577283 ACAAGGCAACGTTACTGTAACATT 59.423 37.500 25.39 16.82 46.39 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.