Multiple sequence alignment - TraesCS3D01G211700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G211700 chr3D 100.000 5738 0 0 1 5738 283309563 283315300 0.000000e+00 10597.0
1 TraesCS3D01G211700 chr3D 91.731 387 22 7 1693 2073 418216323 418215941 3.940000e-146 529.0
2 TraesCS3D01G211700 chr3D 89.506 162 14 3 2614 2774 54335469 54335628 9.750000e-48 202.0
3 TraesCS3D01G211700 chr3D 100.000 31 0 0 1636 1666 6428192 6428222 2.230000e-04 58.4
4 TraesCS3D01G211700 chr3D 90.000 40 4 0 1625 1664 253553931 253553970 1.000000e-02 52.8
5 TraesCS3D01G211700 chr3D 92.105 38 2 1 1628 1665 456926373 456926337 1.000000e-02 52.8
6 TraesCS3D01G211700 chr3B 96.447 4053 82 27 1660 5665 377419670 377423707 0.000000e+00 6630.0
7 TraesCS3D01G211700 chr3B 96.361 1374 25 11 312 1664 377418273 377419642 0.000000e+00 2237.0
8 TraesCS3D01G211700 chr3B 90.097 414 33 6 1666 2073 544546256 544545845 1.090000e-146 531.0
9 TraesCS3D01G211700 chr3B 97.049 305 9 0 3 307 377407076 377407380 1.100000e-141 514.0
10 TraesCS3D01G211700 chr3A 95.473 3269 109 16 2403 5655 370235451 370238696 0.000000e+00 5180.0
11 TraesCS3D01G211700 chr3A 92.200 1000 46 16 635 1629 370233421 370234393 0.000000e+00 1386.0
12 TraesCS3D01G211700 chr3A 91.975 648 41 7 1660 2297 370234469 370235115 0.000000e+00 898.0
13 TraesCS3D01G211700 chr3A 85.171 263 36 3 30 291 697439336 697439076 3.410000e-67 267.0
14 TraesCS3D01G211700 chr3A 95.192 104 4 1 2291 2393 370235207 370235310 4.600000e-36 163.0
15 TraesCS3D01G211700 chr3A 97.222 36 0 1 4476 4510 44444020 44443985 6.210000e-05 60.2
16 TraesCS3D01G211700 chr5A 89.914 466 39 5 1 461 657669914 657670376 1.380000e-165 593.0
17 TraesCS3D01G211700 chr5A 97.222 36 0 1 4476 4510 688610379 688610414 6.210000e-05 60.2
18 TraesCS3D01G211700 chr7B 89.835 423 35 6 1664 2080 181407883 181408303 2.350000e-148 536.0
19 TraesCS3D01G211700 chr7B 89.912 228 22 1 3 229 533295466 533295693 5.620000e-75 292.0
20 TraesCS3D01G211700 chr7B 97.222 36 0 1 4476 4510 458563443 458563408 6.210000e-05 60.2
21 TraesCS3D01G211700 chr5D 89.952 418 35 7 1660 2073 423970828 423970414 3.040000e-147 532.0
22 TraesCS3D01G211700 chr5D 95.890 73 3 0 5666 5738 49239729 49239801 1.010000e-22 119.0
23 TraesCS3D01G211700 chr2B 90.097 414 34 7 1666 2074 415997278 415996867 1.090000e-146 531.0
24 TraesCS3D01G211700 chr2B 88.889 414 38 7 1666 2073 43229136 43228725 2.390000e-138 503.0
25 TraesCS3D01G211700 chr2B 86.742 445 57 2 5 449 785218226 785217784 1.440000e-135 494.0
26 TraesCS3D01G211700 chr6D 89.563 412 34 8 1667 2074 138366564 138366158 1.100000e-141 514.0
27 TraesCS3D01G211700 chr6D 94.805 77 3 1 5663 5738 454820410 454820486 1.010000e-22 119.0
28 TraesCS3D01G211700 chr6D 93.333 75 5 0 5664 5738 253351316 253351390 1.690000e-20 111.0
29 TraesCS3D01G211700 chr7A 90.789 228 20 1 3 229 572861910 572862137 2.600000e-78 303.0
30 TraesCS3D01G211700 chr7A 77.333 375 46 13 2403 2774 367255851 367256189 9.820000e-43 185.0
31 TraesCS3D01G211700 chr2D 78.342 374 43 12 2403 2774 467996847 467997184 2.100000e-49 207.0
32 TraesCS3D01G211700 chr2D 94.690 113 6 0 3 115 579573020 579573132 5.910000e-40 176.0
33 TraesCS3D01G211700 chr2D 97.222 36 0 1 4476 4510 520639814 520639779 6.210000e-05 60.2
34 TraesCS3D01G211700 chr2D 89.130 46 3 2 1620 1665 23043907 23043950 8.030000e-04 56.5
35 TraesCS3D01G211700 chr7D 95.890 73 3 0 5666 5738 159462089 159462161 1.010000e-22 119.0
36 TraesCS3D01G211700 chr1D 95.890 73 3 0 5666 5738 375851898 375851826 1.010000e-22 119.0
37 TraesCS3D01G211700 chr1D 95.833 72 3 0 5667 5738 180857966 180858037 3.630000e-22 117.0
38 TraesCS3D01G211700 chr1D 100.000 32 0 0 1634 1665 233793708 233793739 6.210000e-05 60.2
39 TraesCS3D01G211700 chr4D 94.521 73 4 0 5666 5738 178827718 178827790 4.700000e-21 113.0
40 TraesCS3D01G211700 chr4D 94.521 73 4 0 5666 5738 235900847 235900919 4.700000e-21 113.0
41 TraesCS3D01G211700 chr4D 97.222 36 0 1 4476 4510 27292543 27292508 6.210000e-05 60.2
42 TraesCS3D01G211700 chr4D 94.444 36 0 2 1630 1664 365838513 365838479 3.000000e-03 54.7
43 TraesCS3D01G211700 chr4A 94.521 73 4 0 5666 5738 343146714 343146786 4.700000e-21 113.0
44 TraesCS3D01G211700 chr4A 94.444 36 0 2 1630 1664 99032977 99033011 3.000000e-03 54.7
45 TraesCS3D01G211700 chr5B 97.222 36 0 1 4476 4510 126610023 126610058 6.210000e-05 60.2
46 TraesCS3D01G211700 chr1B 97.222 36 0 1 4476 4510 432109165 432109200 6.210000e-05 60.2
47 TraesCS3D01G211700 chr1A 100.000 31 0 0 1634 1664 313907357 313907327 2.230000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G211700 chr3D 283309563 283315300 5737 False 10597.00 10597 100.000 1 5738 1 chr3D.!!$F4 5737
1 TraesCS3D01G211700 chr3B 377418273 377423707 5434 False 4433.50 6630 96.404 312 5665 2 chr3B.!!$F2 5353
2 TraesCS3D01G211700 chr3A 370233421 370238696 5275 False 1906.75 5180 93.710 635 5655 4 chr3A.!!$F1 5020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.035458 AGTTGGAGCCCTCAACGAAG 59.965 55.000 0.00 0.00 46.36 3.79 F
302 303 0.035820 ATTTGCTGCATGGCCAAAGG 60.036 50.000 10.96 3.32 0.00 3.11 F
368 369 0.663568 CGCCGCTATAGCACCAGTAC 60.664 60.000 23.99 4.39 42.21 2.73 F
761 783 1.011333 GCTCTCGCTCGACTAGTCTT 58.989 55.000 20.34 0.00 0.00 3.01 F
1206 1237 1.929088 GGGGCTAGGGGTGGAGTTT 60.929 63.158 0.00 0.00 0.00 2.66 F
3155 3475 2.498441 AGTATATTGTGGAAGGGGCCA 58.502 47.619 4.39 0.00 35.02 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1126 1157 0.037447 GCCTTCAAGCTCCTCCACTT 59.963 55.000 0.00 0.00 0.00 3.16 R
2179 2262 1.446366 GGCGACCCAAGACTATCCC 59.554 63.158 0.00 0.00 0.00 3.85 R
2230 2318 7.521529 CAAGACCAAATACATTGTGTACTCTG 58.478 38.462 0.00 0.00 35.42 3.35 R
2979 3299 4.508124 GCGACTGAATTCCAAGATCGTTAT 59.492 41.667 2.27 0.00 31.31 1.89 R
3373 3695 1.889170 TGAACTGGTGCACAAACAACA 59.111 42.857 20.43 8.34 35.52 3.33 R
5200 5536 0.107508 CCTGCATCATCGGTTCCACT 60.108 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.468333 CATCCCACCAATACATCAATTGAA 57.532 37.500 13.09 0.00 38.84 2.69
24 25 7.058023 CATCCCACCAATACATCAATTGAAT 57.942 36.000 13.09 6.52 38.84 2.57
25 26 8.180706 CATCCCACCAATACATCAATTGAATA 57.819 34.615 13.09 8.63 38.84 1.75
26 27 8.809066 CATCCCACCAATACATCAATTGAATAT 58.191 33.333 13.09 10.56 38.84 1.28
27 28 8.408043 TCCCACCAATACATCAATTGAATATC 57.592 34.615 13.09 0.00 38.84 1.63
28 29 7.174772 TCCCACCAATACATCAATTGAATATCG 59.825 37.037 13.09 9.49 38.84 2.92
29 30 7.040478 CCCACCAATACATCAATTGAATATCGT 60.040 37.037 13.09 10.02 38.84 3.73
30 31 8.998377 CCACCAATACATCAATTGAATATCGTA 58.002 33.333 13.09 9.34 38.84 3.43
33 34 9.546909 CCAATACATCAATTGAATATCGTAAGC 57.453 33.333 13.09 0.00 38.84 3.09
37 38 7.080099 ACATCAATTGAATATCGTAAGCATGC 58.920 34.615 13.09 10.51 37.18 4.06
38 39 6.000891 TCAATTGAATATCGTAAGCATGCC 57.999 37.500 15.66 0.00 37.18 4.40
39 40 5.764686 TCAATTGAATATCGTAAGCATGCCT 59.235 36.000 15.66 3.39 37.18 4.75
40 41 6.934083 TCAATTGAATATCGTAAGCATGCCTA 59.066 34.615 15.66 2.10 37.18 3.93
41 42 6.974932 ATTGAATATCGTAAGCATGCCTAG 57.025 37.500 15.66 3.78 37.18 3.02
42 43 5.468540 TGAATATCGTAAGCATGCCTAGT 57.531 39.130 15.66 0.00 37.18 2.57
43 44 5.853936 TGAATATCGTAAGCATGCCTAGTT 58.146 37.500 15.66 4.43 37.18 2.24
44 45 6.988522 TGAATATCGTAAGCATGCCTAGTTA 58.011 36.000 15.66 3.31 37.18 2.24
45 46 7.438564 TGAATATCGTAAGCATGCCTAGTTAA 58.561 34.615 15.66 0.00 37.18 2.01
46 47 7.929245 TGAATATCGTAAGCATGCCTAGTTAAA 59.071 33.333 15.66 0.00 37.18 1.52
47 48 8.848474 AATATCGTAAGCATGCCTAGTTAAAT 57.152 30.769 15.66 6.46 37.18 1.40
48 49 9.938280 AATATCGTAAGCATGCCTAGTTAAATA 57.062 29.630 15.66 8.26 37.18 1.40
49 50 7.891183 ATCGTAAGCATGCCTAGTTAAATAG 57.109 36.000 15.66 2.92 37.18 1.73
50 51 6.812998 TCGTAAGCATGCCTAGTTAAATAGT 58.187 36.000 15.66 0.00 37.18 2.12
51 52 6.700081 TCGTAAGCATGCCTAGTTAAATAGTG 59.300 38.462 15.66 2.59 37.18 2.74
52 53 6.479001 CGTAAGCATGCCTAGTTAAATAGTGT 59.521 38.462 15.66 0.00 0.00 3.55
53 54 6.683974 AAGCATGCCTAGTTAAATAGTGTG 57.316 37.500 15.66 5.86 0.00 3.82
54 55 4.576463 AGCATGCCTAGTTAAATAGTGTGC 59.424 41.667 15.66 16.79 0.00 4.57
55 56 4.261197 GCATGCCTAGTTAAATAGTGTGCC 60.261 45.833 6.36 4.20 0.00 5.01
56 57 4.561500 TGCCTAGTTAAATAGTGTGCCA 57.438 40.909 8.97 0.00 0.00 4.92
57 58 4.912586 TGCCTAGTTAAATAGTGTGCCAA 58.087 39.130 8.97 0.00 0.00 4.52
58 59 5.317808 TGCCTAGTTAAATAGTGTGCCAAA 58.682 37.500 8.97 0.00 0.00 3.28
59 60 5.949354 TGCCTAGTTAAATAGTGTGCCAAAT 59.051 36.000 8.97 0.00 0.00 2.32
60 61 6.435904 TGCCTAGTTAAATAGTGTGCCAAATT 59.564 34.615 8.97 0.00 0.00 1.82
61 62 7.612244 TGCCTAGTTAAATAGTGTGCCAAATTA 59.388 33.333 8.97 0.00 0.00 1.40
62 63 8.630037 GCCTAGTTAAATAGTGTGCCAAATTAT 58.370 33.333 8.97 0.00 0.00 1.28
76 77 4.981806 CAAATTATTGGCTTCCCTCGAA 57.018 40.909 0.00 0.00 32.69 3.71
77 78 4.672409 CAAATTATTGGCTTCCCTCGAAC 58.328 43.478 0.00 0.00 32.69 3.95
78 79 3.644966 ATTATTGGCTTCCCTCGAACA 57.355 42.857 0.00 0.00 0.00 3.18
79 80 3.426787 TTATTGGCTTCCCTCGAACAA 57.573 42.857 0.00 0.00 0.00 2.83
80 81 2.514458 ATTGGCTTCCCTCGAACAAT 57.486 45.000 0.00 0.00 0.00 2.71
81 82 1.533625 TTGGCTTCCCTCGAACAATG 58.466 50.000 0.00 0.00 0.00 2.82
82 83 0.960364 TGGCTTCCCTCGAACAATGC 60.960 55.000 0.00 0.00 0.00 3.56
83 84 0.678048 GGCTTCCCTCGAACAATGCT 60.678 55.000 0.00 0.00 0.00 3.79
84 85 0.449388 GCTTCCCTCGAACAATGCTG 59.551 55.000 0.00 0.00 0.00 4.41
85 86 1.089920 CTTCCCTCGAACAATGCTGG 58.910 55.000 0.00 0.00 0.00 4.85
86 87 0.690192 TTCCCTCGAACAATGCTGGA 59.310 50.000 0.00 0.00 0.00 3.86
87 88 0.690192 TCCCTCGAACAATGCTGGAA 59.310 50.000 0.00 0.00 0.00 3.53
88 89 1.073125 TCCCTCGAACAATGCTGGAAA 59.927 47.619 0.00 0.00 0.00 3.13
89 90 1.200020 CCCTCGAACAATGCTGGAAAC 59.800 52.381 0.00 0.00 0.00 2.78
90 91 1.135972 CCTCGAACAATGCTGGAAACG 60.136 52.381 0.00 0.00 0.00 3.60
91 92 1.798223 CTCGAACAATGCTGGAAACGA 59.202 47.619 0.00 0.00 0.00 3.85
92 93 2.214347 TCGAACAATGCTGGAAACGAA 58.786 42.857 0.00 0.00 0.00 3.85
93 94 2.811431 TCGAACAATGCTGGAAACGAAT 59.189 40.909 0.00 0.00 0.00 3.34
94 95 3.120338 TCGAACAATGCTGGAAACGAATC 60.120 43.478 0.00 0.00 0.00 2.52
95 96 2.900122 ACAATGCTGGAAACGAATCG 57.100 45.000 0.00 0.00 0.00 3.34
96 97 2.422597 ACAATGCTGGAAACGAATCGA 58.577 42.857 10.55 0.00 0.00 3.59
97 98 2.811431 ACAATGCTGGAAACGAATCGAA 59.189 40.909 10.55 0.00 0.00 3.71
98 99 3.120199 ACAATGCTGGAAACGAATCGAAG 60.120 43.478 10.55 0.00 0.00 3.79
99 100 2.448926 TGCTGGAAACGAATCGAAGA 57.551 45.000 10.55 0.00 45.75 2.87
100 101 2.972625 TGCTGGAAACGAATCGAAGAT 58.027 42.857 10.55 0.00 45.12 2.40
101 102 4.118093 TGCTGGAAACGAATCGAAGATA 57.882 40.909 10.55 0.00 45.12 1.98
102 103 3.863424 TGCTGGAAACGAATCGAAGATAC 59.137 43.478 10.55 0.00 45.12 2.24
103 104 3.863424 GCTGGAAACGAATCGAAGATACA 59.137 43.478 10.55 0.00 45.12 2.29
104 105 4.259850 GCTGGAAACGAATCGAAGATACAC 60.260 45.833 10.55 0.00 45.12 2.90
105 106 4.178540 TGGAAACGAATCGAAGATACACC 58.821 43.478 10.55 2.05 45.12 4.16
106 107 3.242248 GGAAACGAATCGAAGATACACCG 59.758 47.826 10.55 0.00 45.12 4.94
107 108 3.498927 AACGAATCGAAGATACACCGT 57.501 42.857 10.55 0.00 45.12 4.83
108 109 2.793933 ACGAATCGAAGATACACCGTG 58.206 47.619 10.55 0.00 45.12 4.94
109 110 2.163010 ACGAATCGAAGATACACCGTGT 59.837 45.455 10.55 9.58 45.12 4.49
110 111 2.530297 CGAATCGAAGATACACCGTGTG 59.470 50.000 14.66 0.50 45.12 3.82
111 112 1.922570 ATCGAAGATACACCGTGTGC 58.077 50.000 14.66 6.36 45.12 4.57
112 113 0.455464 TCGAAGATACACCGTGTGCG 60.455 55.000 14.66 9.67 36.98 5.34
113 114 0.455464 CGAAGATACACCGTGTGCGA 60.455 55.000 14.66 0.00 41.33 5.10
114 115 1.269166 GAAGATACACCGTGTGCGAG 58.731 55.000 14.66 0.00 41.33 5.03
115 116 0.601558 AAGATACACCGTGTGCGAGT 59.398 50.000 14.66 0.00 41.33 4.18
116 117 0.601558 AGATACACCGTGTGCGAGTT 59.398 50.000 14.66 0.00 41.33 3.01
117 118 0.713883 GATACACCGTGTGCGAGTTG 59.286 55.000 14.66 0.00 41.33 3.16
118 119 0.669318 ATACACCGTGTGCGAGTTGG 60.669 55.000 14.66 0.00 41.33 3.77
119 120 1.736365 TACACCGTGTGCGAGTTGGA 61.736 55.000 14.66 0.00 41.33 3.53
120 121 1.885388 CACCGTGTGCGAGTTGGAA 60.885 57.895 0.00 0.00 41.33 3.53
121 122 1.153329 ACCGTGTGCGAGTTGGAAA 60.153 52.632 0.00 0.00 41.33 3.13
122 123 1.278637 CCGTGTGCGAGTTGGAAAC 59.721 57.895 0.00 0.00 40.53 2.78
123 124 1.433053 CCGTGTGCGAGTTGGAAACA 61.433 55.000 0.00 0.00 43.54 2.83
124 125 2.930764 CCGTGTGCGAGTTGGAAACAA 61.931 52.381 0.00 0.00 43.54 2.83
125 126 4.201234 CCGTGTGCGAGTTGGAAACAAT 62.201 50.000 0.00 0.00 46.92 2.71
126 127 5.958292 CCGTGTGCGAGTTGGAAACAATC 62.958 52.174 0.00 0.00 46.92 2.67
148 149 2.311463 ACGAGAGTAGCAGCATATGGT 58.689 47.619 0.40 0.40 46.88 3.55
149 150 2.035193 ACGAGAGTAGCAGCATATGGTG 59.965 50.000 26.83 26.83 46.88 4.17
167 168 9.539825 CATATGGTGCCAATATATCTAAGACTC 57.460 37.037 0.00 0.00 0.00 3.36
168 169 6.360370 TGGTGCCAATATATCTAAGACTCC 57.640 41.667 0.00 0.00 0.00 3.85
169 170 5.843969 TGGTGCCAATATATCTAAGACTCCA 59.156 40.000 0.00 0.00 0.00 3.86
170 171 6.501805 TGGTGCCAATATATCTAAGACTCCAT 59.498 38.462 0.00 0.00 0.00 3.41
171 172 7.017551 TGGTGCCAATATATCTAAGACTCCATT 59.982 37.037 0.00 0.00 0.00 3.16
172 173 7.335422 GGTGCCAATATATCTAAGACTCCATTG 59.665 40.741 0.00 0.00 0.00 2.82
173 174 6.881065 TGCCAATATATCTAAGACTCCATTGC 59.119 38.462 0.00 0.00 0.00 3.56
174 175 6.881065 GCCAATATATCTAAGACTCCATTGCA 59.119 38.462 0.00 0.00 0.00 4.08
175 176 7.555554 GCCAATATATCTAAGACTCCATTGCAT 59.444 37.037 0.00 0.00 0.00 3.96
176 177 8.890718 CCAATATATCTAAGACTCCATTGCATG 58.109 37.037 0.00 0.00 0.00 4.06
177 178 8.396390 CAATATATCTAAGACTCCATTGCATGC 58.604 37.037 11.82 11.82 0.00 4.06
178 179 3.632643 TCTAAGACTCCATTGCATGCA 57.367 42.857 18.46 18.46 0.00 3.96
179 180 4.160642 TCTAAGACTCCATTGCATGCAT 57.839 40.909 23.37 4.78 0.00 3.96
180 181 4.132336 TCTAAGACTCCATTGCATGCATC 58.868 43.478 23.37 14.87 0.00 3.91
181 182 2.430248 AGACTCCATTGCATGCATCA 57.570 45.000 23.37 8.08 0.00 3.07
182 183 2.730382 AGACTCCATTGCATGCATCAA 58.270 42.857 23.37 7.20 0.00 2.57
183 184 3.296854 AGACTCCATTGCATGCATCAAT 58.703 40.909 23.37 9.61 34.74 2.57
184 185 3.704566 AGACTCCATTGCATGCATCAATT 59.295 39.130 23.37 4.49 32.30 2.32
185 186 4.891168 AGACTCCATTGCATGCATCAATTA 59.109 37.500 23.37 5.43 32.30 1.40
186 187 4.940463 ACTCCATTGCATGCATCAATTAC 58.060 39.130 23.37 0.00 32.30 1.89
187 188 4.202182 ACTCCATTGCATGCATCAATTACC 60.202 41.667 23.37 0.00 32.30 2.85
188 189 3.962063 TCCATTGCATGCATCAATTACCT 59.038 39.130 23.37 0.00 32.30 3.08
189 190 4.038282 TCCATTGCATGCATCAATTACCTC 59.962 41.667 23.37 0.00 32.30 3.85
190 191 4.304110 CATTGCATGCATCAATTACCTCC 58.696 43.478 23.37 0.00 32.30 4.30
191 192 3.015675 TGCATGCATCAATTACCTCCA 57.984 42.857 18.46 0.00 0.00 3.86
192 193 3.363627 TGCATGCATCAATTACCTCCAA 58.636 40.909 18.46 0.00 0.00 3.53
193 194 3.382227 TGCATGCATCAATTACCTCCAAG 59.618 43.478 18.46 0.00 0.00 3.61
194 195 3.797865 GCATGCATCAATTACCTCCAAGC 60.798 47.826 14.21 0.00 0.00 4.01
195 196 3.084536 TGCATCAATTACCTCCAAGCA 57.915 42.857 0.00 0.00 0.00 3.91
196 197 3.018856 TGCATCAATTACCTCCAAGCAG 58.981 45.455 0.00 0.00 0.00 4.24
197 198 3.019564 GCATCAATTACCTCCAAGCAGT 58.980 45.455 0.00 0.00 0.00 4.40
198 199 3.065925 GCATCAATTACCTCCAAGCAGTC 59.934 47.826 0.00 0.00 0.00 3.51
199 200 4.264253 CATCAATTACCTCCAAGCAGTCA 58.736 43.478 0.00 0.00 0.00 3.41
200 201 3.942829 TCAATTACCTCCAAGCAGTCAG 58.057 45.455 0.00 0.00 0.00 3.51
201 202 3.582647 TCAATTACCTCCAAGCAGTCAGA 59.417 43.478 0.00 0.00 0.00 3.27
202 203 4.225942 TCAATTACCTCCAAGCAGTCAGAT 59.774 41.667 0.00 0.00 0.00 2.90
203 204 4.851639 ATTACCTCCAAGCAGTCAGATT 57.148 40.909 0.00 0.00 0.00 2.40
204 205 2.777832 ACCTCCAAGCAGTCAGATTC 57.222 50.000 0.00 0.00 0.00 2.52
205 206 1.980765 ACCTCCAAGCAGTCAGATTCA 59.019 47.619 0.00 0.00 0.00 2.57
206 207 2.373169 ACCTCCAAGCAGTCAGATTCAA 59.627 45.455 0.00 0.00 0.00 2.69
207 208 2.746362 CCTCCAAGCAGTCAGATTCAAC 59.254 50.000 0.00 0.00 0.00 3.18
208 209 2.414481 CTCCAAGCAGTCAGATTCAACG 59.586 50.000 0.00 0.00 0.00 4.10
209 210 2.037121 TCCAAGCAGTCAGATTCAACGA 59.963 45.455 0.00 0.00 0.00 3.85
210 211 3.005554 CCAAGCAGTCAGATTCAACGAT 58.994 45.455 0.00 0.00 0.00 3.73
211 212 3.181513 CCAAGCAGTCAGATTCAACGATG 60.182 47.826 0.00 0.00 0.00 3.84
212 213 3.599730 AGCAGTCAGATTCAACGATGA 57.400 42.857 0.00 0.00 0.00 2.92
213 214 4.134379 AGCAGTCAGATTCAACGATGAT 57.866 40.909 0.00 0.00 34.96 2.45
214 215 4.118410 AGCAGTCAGATTCAACGATGATC 58.882 43.478 0.00 0.00 34.96 2.92
215 216 3.247173 GCAGTCAGATTCAACGATGATCC 59.753 47.826 0.00 0.00 34.96 3.36
216 217 4.691175 CAGTCAGATTCAACGATGATCCT 58.309 43.478 0.00 0.00 34.96 3.24
217 218 5.114780 CAGTCAGATTCAACGATGATCCTT 58.885 41.667 0.00 0.00 34.96 3.36
218 219 5.006455 CAGTCAGATTCAACGATGATCCTTG 59.994 44.000 0.00 0.00 34.96 3.61
219 220 3.873361 TCAGATTCAACGATGATCCTTGC 59.127 43.478 0.00 0.00 34.96 4.01
220 221 3.624410 CAGATTCAACGATGATCCTTGCA 59.376 43.478 0.00 0.00 34.96 4.08
221 222 3.624861 AGATTCAACGATGATCCTTGCAC 59.375 43.478 0.00 0.00 34.96 4.57
222 223 2.470983 TCAACGATGATCCTTGCACA 57.529 45.000 0.00 0.00 0.00 4.57
223 224 2.076100 TCAACGATGATCCTTGCACAC 58.924 47.619 0.00 0.00 0.00 3.82
224 225 1.131126 CAACGATGATCCTTGCACACC 59.869 52.381 0.00 0.00 0.00 4.16
225 226 0.392998 ACGATGATCCTTGCACACCC 60.393 55.000 0.00 0.00 0.00 4.61
226 227 0.392863 CGATGATCCTTGCACACCCA 60.393 55.000 0.00 0.00 0.00 4.51
227 228 1.838112 GATGATCCTTGCACACCCAA 58.162 50.000 0.00 0.00 0.00 4.12
228 229 2.381911 GATGATCCTTGCACACCCAAT 58.618 47.619 0.00 0.00 0.00 3.16
229 230 1.838112 TGATCCTTGCACACCCAATC 58.162 50.000 0.00 0.00 0.00 2.67
230 231 1.355381 TGATCCTTGCACACCCAATCT 59.645 47.619 0.00 0.00 0.00 2.40
231 232 1.747355 GATCCTTGCACACCCAATCTG 59.253 52.381 0.00 0.00 0.00 2.90
232 233 0.895100 TCCTTGCACACCCAATCTGC 60.895 55.000 0.00 0.00 0.00 4.26
233 234 0.896940 CCTTGCACACCCAATCTGCT 60.897 55.000 0.00 0.00 0.00 4.24
234 235 0.242825 CTTGCACACCCAATCTGCTG 59.757 55.000 0.00 0.00 0.00 4.41
235 236 0.178995 TTGCACACCCAATCTGCTGA 60.179 50.000 0.00 0.00 0.00 4.26
236 237 0.178995 TGCACACCCAATCTGCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
237 238 0.242017 GCACACCCAATCTGCTGAAC 59.758 55.000 0.00 0.00 0.00 3.18
238 239 1.608055 CACACCCAATCTGCTGAACA 58.392 50.000 0.00 0.00 0.00 3.18
239 240 1.955778 CACACCCAATCTGCTGAACAA 59.044 47.619 0.00 0.00 0.00 2.83
240 241 2.030540 CACACCCAATCTGCTGAACAAG 60.031 50.000 0.00 0.00 0.00 3.16
241 242 2.233271 CACCCAATCTGCTGAACAAGT 58.767 47.619 0.00 0.00 0.00 3.16
242 243 2.624838 CACCCAATCTGCTGAACAAGTT 59.375 45.455 0.00 0.00 0.00 2.66
243 244 2.624838 ACCCAATCTGCTGAACAAGTTG 59.375 45.455 0.00 0.00 0.00 3.16
244 245 2.029649 CCCAATCTGCTGAACAAGTTGG 60.030 50.000 7.96 13.26 40.25 3.77
245 246 2.886523 CCAATCTGCTGAACAAGTTGGA 59.113 45.455 14.48 0.00 41.83 3.53
246 247 3.057736 CCAATCTGCTGAACAAGTTGGAG 60.058 47.826 14.48 1.36 41.83 3.86
247 248 1.597742 TCTGCTGAACAAGTTGGAGC 58.402 50.000 7.96 11.59 0.00 4.70
248 249 0.595095 CTGCTGAACAAGTTGGAGCC 59.405 55.000 16.64 1.68 0.00 4.70
249 250 0.823356 TGCTGAACAAGTTGGAGCCC 60.823 55.000 16.64 1.25 0.00 5.19
250 251 0.538287 GCTGAACAAGTTGGAGCCCT 60.538 55.000 7.96 0.00 0.00 5.19
251 252 1.528129 CTGAACAAGTTGGAGCCCTC 58.472 55.000 7.96 0.00 0.00 4.30
252 253 0.843309 TGAACAAGTTGGAGCCCTCA 59.157 50.000 7.96 0.00 0.00 3.86
253 254 1.214175 TGAACAAGTTGGAGCCCTCAA 59.786 47.619 7.96 0.00 0.00 3.02
254 255 1.609072 GAACAAGTTGGAGCCCTCAAC 59.391 52.381 7.96 6.37 43.31 3.18
255 256 0.535102 ACAAGTTGGAGCCCTCAACG 60.535 55.000 7.96 0.00 46.36 4.10
256 257 0.250295 CAAGTTGGAGCCCTCAACGA 60.250 55.000 0.00 0.00 46.36 3.85
257 258 0.472471 AAGTTGGAGCCCTCAACGAA 59.528 50.000 0.00 0.00 46.36 3.85
258 259 0.035458 AGTTGGAGCCCTCAACGAAG 59.965 55.000 0.00 0.00 46.36 3.79
260 261 0.250295 TTGGAGCCCTCAACGAAGTG 60.250 55.000 0.00 0.00 45.00 3.16
261 262 2.035442 GGAGCCCTCAACGAAGTGC 61.035 63.158 0.00 0.00 45.00 4.40
262 263 1.004440 GAGCCCTCAACGAAGTGCT 60.004 57.895 0.00 0.00 45.00 4.40
263 264 0.246635 GAGCCCTCAACGAAGTGCTA 59.753 55.000 0.00 0.00 45.00 3.49
264 265 0.685097 AGCCCTCAACGAAGTGCTAA 59.315 50.000 0.00 0.00 45.00 3.09
265 266 1.071699 AGCCCTCAACGAAGTGCTAAA 59.928 47.619 0.00 0.00 45.00 1.85
266 267 1.464997 GCCCTCAACGAAGTGCTAAAG 59.535 52.381 0.00 0.00 45.00 1.85
267 268 1.464997 CCCTCAACGAAGTGCTAAAGC 59.535 52.381 0.00 0.00 45.00 3.51
268 269 2.417719 CCTCAACGAAGTGCTAAAGCT 58.582 47.619 3.26 0.00 45.00 3.74
269 270 2.808543 CCTCAACGAAGTGCTAAAGCTT 59.191 45.455 3.26 0.00 45.00 3.74
270 271 3.120511 CCTCAACGAAGTGCTAAAGCTTC 60.121 47.826 0.00 0.00 45.00 3.86
271 272 2.806244 TCAACGAAGTGCTAAAGCTTCC 59.194 45.455 0.00 0.00 45.00 3.46
272 273 1.429463 ACGAAGTGCTAAAGCTTCCG 58.571 50.000 0.00 0.00 42.51 4.30
273 274 0.095417 CGAAGTGCTAAAGCTTCCGC 59.905 55.000 0.00 6.18 42.66 5.54
274 275 0.448197 GAAGTGCTAAAGCTTCCGCC 59.552 55.000 14.92 8.23 42.66 6.13
275 276 1.298859 AAGTGCTAAAGCTTCCGCCG 61.299 55.000 14.92 0.00 42.66 6.46
276 277 1.740296 GTGCTAAAGCTTCCGCCGA 60.740 57.895 14.92 0.00 42.66 5.54
277 278 1.004320 TGCTAAAGCTTCCGCCGAA 60.004 52.632 14.92 0.00 42.66 4.30
287 288 4.834892 CCGCCGAAGCCGCATTTG 62.835 66.667 0.00 0.00 34.57 2.32
289 290 4.120331 GCCGAAGCCGCATTTGCT 62.120 61.111 0.51 0.00 41.89 3.91
290 291 2.202518 CCGAAGCCGCATTTGCTG 60.203 61.111 0.51 0.00 39.48 4.41
300 301 3.234979 CATTTGCTGCATGGCCAAA 57.765 47.368 10.96 0.00 0.00 3.28
301 302 1.083489 CATTTGCTGCATGGCCAAAG 58.917 50.000 10.96 9.50 0.00 2.77
302 303 0.035820 ATTTGCTGCATGGCCAAAGG 60.036 50.000 10.96 3.32 0.00 3.11
303 304 2.114488 TTTGCTGCATGGCCAAAGGG 62.114 55.000 10.96 0.27 37.18 3.95
368 369 0.663568 CGCCGCTATAGCACCAGTAC 60.664 60.000 23.99 4.39 42.21 2.73
400 401 7.874016 TCAAAGAAAGCTGCATTTGTATTCAAT 59.126 29.630 14.08 0.00 34.88 2.57
568 569 1.203187 TCTCTGGCTCACTGGTTACCT 60.203 52.381 2.07 0.00 0.00 3.08
638 639 6.346919 CGAATTAGGGCAAGATCGATACAAAG 60.347 42.308 0.00 0.00 33.50 2.77
684 695 2.989639 CAGCCCAGAACCATCCGA 59.010 61.111 0.00 0.00 0.00 4.55
761 783 1.011333 GCTCTCGCTCGACTAGTCTT 58.989 55.000 20.34 0.00 0.00 3.01
1206 1237 1.929088 GGGGCTAGGGGTGGAGTTT 60.929 63.158 0.00 0.00 0.00 2.66
1345 1376 4.982916 CCTTTTATGTACTGCTACCGCTAG 59.017 45.833 0.00 0.00 36.97 3.42
1347 1378 4.825546 TTATGTACTGCTACCGCTAGTC 57.174 45.455 0.00 0.00 36.97 2.59
1683 1760 7.430760 AAGACAGAAAATACATAGGAGCTCT 57.569 36.000 14.64 2.18 0.00 4.09
1775 1856 4.546605 TGGGGATATTAAACCTGGGTTCTT 59.453 41.667 0.00 0.00 37.35 2.52
1786 1867 4.038633 ACCTGGGTTCTTAATCTACTCCC 58.961 47.826 0.00 0.00 0.00 4.30
1840 1921 2.930826 ATCCGTGGCGAAGGAAATAT 57.069 45.000 7.56 0.00 40.32 1.28
2179 2262 5.610982 GCGTTGCTCATTTTTGACAAATCAG 60.611 40.000 0.50 0.00 35.83 2.90
2180 2263 5.107760 CGTTGCTCATTTTTGACAAATCAGG 60.108 40.000 0.50 0.00 35.83 3.86
2794 3112 8.217111 TGGATAACATCTTTACCAGCATTATCA 58.783 33.333 0.00 0.00 32.07 2.15
2978 3298 6.578023 AGTTGCTGAGAAGGTACATTCTATC 58.422 40.000 21.81 11.88 39.63 2.08
2979 3299 6.155221 AGTTGCTGAGAAGGTACATTCTATCA 59.845 38.462 21.81 15.49 39.63 2.15
3120 3440 7.694093 AGGTTGAACAGATAAAAGAATCTCCT 58.306 34.615 0.00 0.00 33.87 3.69
3155 3475 2.498441 AGTATATTGTGGAAGGGGCCA 58.502 47.619 4.39 0.00 35.02 5.36
3373 3695 6.988580 TGTCATTCGAGCTGAGAAATTCATAT 59.011 34.615 0.00 0.00 34.68 1.78
3956 4280 7.231467 ACTGGTACATACAAATCCTCAACTTT 58.769 34.615 0.00 0.00 38.20 2.66
4450 4777 0.469144 TTGTTTTCAGGCCCTGGACC 60.469 55.000 11.68 0.00 31.51 4.46
4467 4794 5.335661 CCTGGACCAAGTATTTCCTTTTTCG 60.336 44.000 0.00 0.00 0.00 3.46
4468 4795 4.022676 TGGACCAAGTATTTCCTTTTTCGC 60.023 41.667 0.00 0.00 0.00 4.70
4894 5229 5.581085 GCGTGGATCTTGTATAGTTGAAGTT 59.419 40.000 0.00 0.00 0.00 2.66
5172 5508 3.979911 ACATTTGGCATCCATCCAACTA 58.020 40.909 0.00 0.00 42.75 2.24
5186 5522 1.539065 CCAACTAATCGGAGCATCGCT 60.539 52.381 0.00 0.00 43.88 4.93
5189 5525 0.668706 CTAATCGGAGCATCGCTGGG 60.669 60.000 0.00 0.00 39.88 4.45
5198 5534 1.572085 GCATCGCTGGGATCCATTCG 61.572 60.000 15.23 12.79 31.28 3.34
5200 5536 2.043604 ATCGCTGGGATCCATTCGCA 62.044 55.000 15.23 0.29 44.31 5.10
5418 5754 1.741770 CTCCTGCAGCCAACCGTAC 60.742 63.158 8.66 0.00 0.00 3.67
5419 5755 3.118454 CCTGCAGCCAACCGTACG 61.118 66.667 8.66 8.69 0.00 3.67
5420 5756 2.357034 CTGCAGCCAACCGTACGT 60.357 61.111 15.21 0.00 0.00 3.57
5421 5757 2.356553 TGCAGCCAACCGTACGTC 60.357 61.111 15.21 0.00 0.00 4.34
5456 5792 5.924356 TCTTCCGCCACATCATTCTTAATA 58.076 37.500 0.00 0.00 0.00 0.98
5492 5860 1.385743 CTAGTGCAACAACGTAGCGAC 59.614 52.381 0.00 0.00 41.43 5.19
5617 5995 0.316204 GGGTAAGCCATGCATGCATC 59.684 55.000 30.07 19.63 33.90 3.91
5619 5997 1.325355 GTAAGCCATGCATGCATCCT 58.675 50.000 30.07 24.02 33.90 3.24
5622 6000 1.007734 GCCATGCATGCATCCTTCG 60.008 57.895 30.07 17.94 33.90 3.79
5623 6001 1.731433 GCCATGCATGCATCCTTCGT 61.731 55.000 30.07 5.99 33.90 3.85
5624 6002 0.030235 CCATGCATGCATCCTTCGTG 59.970 55.000 30.07 18.20 33.90 4.35
5625 6003 0.736636 CATGCATGCATCCTTCGTGT 59.263 50.000 30.07 4.31 33.90 4.49
5626 6004 1.019673 ATGCATGCATCCTTCGTGTC 58.980 50.000 27.46 0.00 29.42 3.67
5627 6005 0.036105 TGCATGCATCCTTCGTGTCT 60.036 50.000 18.46 0.00 0.00 3.41
5628 6006 0.654683 GCATGCATCCTTCGTGTCTC 59.345 55.000 14.21 0.00 0.00 3.36
5673 6051 3.876274 CGTAGCATGCATATACTCCCT 57.124 47.619 21.98 0.00 0.00 4.20
5674 6052 3.775202 CGTAGCATGCATATACTCCCTC 58.225 50.000 21.98 0.00 0.00 4.30
5675 6053 3.429547 CGTAGCATGCATATACTCCCTCC 60.430 52.174 21.98 0.00 0.00 4.30
5676 6054 1.552337 AGCATGCATATACTCCCTCCG 59.448 52.381 21.98 0.00 0.00 4.63
5677 6055 1.406069 GCATGCATATACTCCCTCCGG 60.406 57.143 14.21 0.00 0.00 5.14
5678 6056 1.902508 CATGCATATACTCCCTCCGGT 59.097 52.381 0.00 0.00 0.00 5.28
5679 6057 1.629043 TGCATATACTCCCTCCGGTC 58.371 55.000 0.00 0.00 0.00 4.79
5680 6058 0.896226 GCATATACTCCCTCCGGTCC 59.104 60.000 0.00 0.00 0.00 4.46
5681 6059 1.550409 GCATATACTCCCTCCGGTCCT 60.550 57.143 0.00 0.00 0.00 3.85
5682 6060 2.890814 CATATACTCCCTCCGGTCCTT 58.109 52.381 0.00 0.00 0.00 3.36
5683 6061 3.240302 CATATACTCCCTCCGGTCCTTT 58.760 50.000 0.00 0.00 0.00 3.11
5684 6062 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
5685 6063 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
5686 6064 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
5687 6065 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
5688 6066 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
5689 6067 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
5690 6068 1.065636 CCCTCCGGTCCTTTTTACTCC 60.066 57.143 0.00 0.00 0.00 3.85
5691 6069 1.405121 CCTCCGGTCCTTTTTACTCCG 60.405 57.143 0.00 0.00 40.72 4.63
5692 6070 0.037046 TCCGGTCCTTTTTACTCCGC 60.037 55.000 0.00 0.00 39.87 5.54
5693 6071 1.356527 CCGGTCCTTTTTACTCCGCG 61.357 60.000 0.00 0.00 39.87 6.46
5694 6072 0.668401 CGGTCCTTTTTACTCCGCGT 60.668 55.000 4.92 0.00 35.01 6.01
5695 6073 1.402720 CGGTCCTTTTTACTCCGCGTA 60.403 52.381 4.92 0.00 35.01 4.42
5696 6074 2.736400 CGGTCCTTTTTACTCCGCGTAT 60.736 50.000 4.92 0.00 35.01 3.06
5697 6075 2.606272 GGTCCTTTTTACTCCGCGTATG 59.394 50.000 4.92 0.00 0.00 2.39
5698 6076 3.514645 GTCCTTTTTACTCCGCGTATGA 58.485 45.455 4.92 0.00 0.00 2.15
5699 6077 3.550678 GTCCTTTTTACTCCGCGTATGAG 59.449 47.826 4.92 7.39 35.92 2.90
5700 6078 3.444742 TCCTTTTTACTCCGCGTATGAGA 59.555 43.478 16.27 0.00 33.95 3.27
5701 6079 4.082081 TCCTTTTTACTCCGCGTATGAGAA 60.082 41.667 16.27 5.18 33.95 2.87
5702 6080 4.809426 CCTTTTTACTCCGCGTATGAGAAT 59.191 41.667 16.27 0.00 33.95 2.40
5703 6081 5.293569 CCTTTTTACTCCGCGTATGAGAATT 59.706 40.000 16.27 0.00 33.95 2.17
5704 6082 5.712217 TTTTACTCCGCGTATGAGAATTG 57.288 39.130 16.27 0.00 33.95 2.32
5705 6083 2.961526 ACTCCGCGTATGAGAATTGT 57.038 45.000 16.27 0.00 33.95 2.71
5706 6084 2.810650 ACTCCGCGTATGAGAATTGTC 58.189 47.619 16.27 0.00 33.95 3.18
5707 6085 2.165641 ACTCCGCGTATGAGAATTGTCA 59.834 45.455 16.27 7.86 33.95 3.58
5708 6086 2.791560 CTCCGCGTATGAGAATTGTCAG 59.208 50.000 11.32 0.00 31.26 3.51
5709 6087 2.425668 TCCGCGTATGAGAATTGTCAGA 59.574 45.455 11.32 3.46 0.00 3.27
5710 6088 3.119280 TCCGCGTATGAGAATTGTCAGAA 60.119 43.478 11.32 0.00 0.00 3.02
5711 6089 3.243877 CCGCGTATGAGAATTGTCAGAAG 59.756 47.826 11.32 9.78 0.00 2.85
5712 6090 3.859961 CGCGTATGAGAATTGTCAGAAGT 59.140 43.478 11.32 0.00 0.00 3.01
5713 6091 4.027295 CGCGTATGAGAATTGTCAGAAGTC 60.027 45.833 11.32 4.91 0.00 3.01
5714 6092 4.864806 GCGTATGAGAATTGTCAGAAGTCA 59.135 41.667 11.32 0.00 0.00 3.41
5715 6093 5.348724 GCGTATGAGAATTGTCAGAAGTCAA 59.651 40.000 11.32 0.00 0.00 3.18
5716 6094 6.128553 GCGTATGAGAATTGTCAGAAGTCAAA 60.129 38.462 11.32 0.00 0.00 2.69
5717 6095 7.230222 CGTATGAGAATTGTCAGAAGTCAAAC 58.770 38.462 11.32 0.00 0.00 2.93
5718 6096 7.116948 CGTATGAGAATTGTCAGAAGTCAAACT 59.883 37.037 11.32 0.00 0.00 2.66
5719 6097 7.814264 ATGAGAATTGTCAGAAGTCAAACTT 57.186 32.000 11.32 0.00 41.95 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.174772 CGATATTCAATTGATGTATTGGTGGGA 59.825 37.037 9.40 0.00 36.41 4.37
3 4 7.040478 ACGATATTCAATTGATGTATTGGTGGG 60.040 37.037 21.24 9.86 36.41 4.61
4 5 7.874940 ACGATATTCAATTGATGTATTGGTGG 58.125 34.615 21.24 10.89 36.41 4.61
11 12 8.229811 GCATGCTTACGATATTCAATTGATGTA 58.770 33.333 11.37 6.27 0.00 2.29
12 13 7.080099 GCATGCTTACGATATTCAATTGATGT 58.920 34.615 11.37 4.09 0.00 3.06
13 14 6.525628 GGCATGCTTACGATATTCAATTGATG 59.474 38.462 18.92 0.81 0.00 3.07
14 15 6.432162 AGGCATGCTTACGATATTCAATTGAT 59.568 34.615 18.92 2.50 0.00 2.57
15 16 5.764686 AGGCATGCTTACGATATTCAATTGA 59.235 36.000 18.92 3.38 0.00 2.57
16 17 6.005583 AGGCATGCTTACGATATTCAATTG 57.994 37.500 18.92 0.00 0.00 2.32
17 18 6.936900 ACTAGGCATGCTTACGATATTCAATT 59.063 34.615 18.92 0.00 0.00 2.32
18 19 6.467677 ACTAGGCATGCTTACGATATTCAAT 58.532 36.000 18.92 0.00 0.00 2.57
19 20 5.853936 ACTAGGCATGCTTACGATATTCAA 58.146 37.500 18.92 0.00 0.00 2.69
20 21 5.468540 ACTAGGCATGCTTACGATATTCA 57.531 39.130 18.92 0.00 0.00 2.57
21 22 7.884816 TTAACTAGGCATGCTTACGATATTC 57.115 36.000 18.92 0.00 0.00 1.75
22 23 8.848474 ATTTAACTAGGCATGCTTACGATATT 57.152 30.769 18.92 4.54 0.00 1.28
23 24 9.587772 CTATTTAACTAGGCATGCTTACGATAT 57.412 33.333 18.92 5.68 0.00 1.63
24 25 8.582437 ACTATTTAACTAGGCATGCTTACGATA 58.418 33.333 18.92 8.13 0.00 2.92
25 26 7.385205 CACTATTTAACTAGGCATGCTTACGAT 59.615 37.037 18.92 6.06 0.00 3.73
26 27 6.700081 CACTATTTAACTAGGCATGCTTACGA 59.300 38.462 18.92 0.00 0.00 3.43
27 28 6.479001 ACACTATTTAACTAGGCATGCTTACG 59.521 38.462 18.92 10.66 0.00 3.18
28 29 7.630924 CACACTATTTAACTAGGCATGCTTAC 58.369 38.462 18.92 0.18 0.00 2.34
29 30 6.260050 GCACACTATTTAACTAGGCATGCTTA 59.740 38.462 18.92 13.95 0.00 3.09
30 31 5.066505 GCACACTATTTAACTAGGCATGCTT 59.933 40.000 18.92 13.45 0.00 3.91
31 32 4.576463 GCACACTATTTAACTAGGCATGCT 59.424 41.667 18.92 6.26 0.00 3.79
32 33 4.261197 GGCACACTATTTAACTAGGCATGC 60.261 45.833 9.90 9.90 0.00 4.06
33 34 4.881273 TGGCACACTATTTAACTAGGCATG 59.119 41.667 5.01 0.00 0.00 4.06
34 35 5.110814 TGGCACACTATTTAACTAGGCAT 57.889 39.130 5.01 0.00 0.00 4.40
35 36 4.561500 TGGCACACTATTTAACTAGGCA 57.438 40.909 5.01 0.00 0.00 4.75
36 37 5.890424 TTTGGCACACTATTTAACTAGGC 57.110 39.130 5.01 0.00 39.29 3.93
55 56 4.157656 TGTTCGAGGGAAGCCAATAATTTG 59.842 41.667 0.00 0.00 31.49 2.32
56 57 4.340617 TGTTCGAGGGAAGCCAATAATTT 58.659 39.130 0.00 0.00 31.49 1.82
57 58 3.963129 TGTTCGAGGGAAGCCAATAATT 58.037 40.909 0.00 0.00 31.49 1.40
58 59 3.644966 TGTTCGAGGGAAGCCAATAAT 57.355 42.857 0.00 0.00 31.49 1.28
59 60 3.426787 TTGTTCGAGGGAAGCCAATAA 57.573 42.857 0.00 0.00 31.49 1.40
60 61 3.278574 CATTGTTCGAGGGAAGCCAATA 58.721 45.455 0.00 0.00 31.08 1.90
61 62 2.094675 CATTGTTCGAGGGAAGCCAAT 58.905 47.619 0.00 0.00 32.26 3.16
62 63 1.533625 CATTGTTCGAGGGAAGCCAA 58.466 50.000 0.00 0.00 31.49 4.52
63 64 0.960364 GCATTGTTCGAGGGAAGCCA 60.960 55.000 0.00 0.00 31.49 4.75
64 65 0.678048 AGCATTGTTCGAGGGAAGCC 60.678 55.000 0.00 0.00 31.49 4.35
65 66 0.449388 CAGCATTGTTCGAGGGAAGC 59.551 55.000 0.00 0.00 31.49 3.86
66 67 1.089920 CCAGCATTGTTCGAGGGAAG 58.910 55.000 0.00 0.00 31.49 3.46
67 68 0.690192 TCCAGCATTGTTCGAGGGAA 59.310 50.000 0.00 0.00 0.00 3.97
68 69 0.690192 TTCCAGCATTGTTCGAGGGA 59.310 50.000 0.00 0.00 0.00 4.20
69 70 1.200020 GTTTCCAGCATTGTTCGAGGG 59.800 52.381 0.00 0.00 0.00 4.30
70 71 1.135972 CGTTTCCAGCATTGTTCGAGG 60.136 52.381 0.00 0.00 0.00 4.63
71 72 1.798223 TCGTTTCCAGCATTGTTCGAG 59.202 47.619 0.00 0.00 0.00 4.04
72 73 1.872388 TCGTTTCCAGCATTGTTCGA 58.128 45.000 0.00 0.00 0.00 3.71
73 74 2.679355 TTCGTTTCCAGCATTGTTCG 57.321 45.000 0.00 0.00 0.00 3.95
74 75 3.120338 TCGATTCGTTTCCAGCATTGTTC 60.120 43.478 5.89 0.00 0.00 3.18
75 76 2.811431 TCGATTCGTTTCCAGCATTGTT 59.189 40.909 5.89 0.00 0.00 2.83
76 77 2.422597 TCGATTCGTTTCCAGCATTGT 58.577 42.857 5.89 0.00 0.00 2.71
77 78 3.125146 TCTTCGATTCGTTTCCAGCATTG 59.875 43.478 5.89 0.00 0.00 2.82
78 79 3.334691 TCTTCGATTCGTTTCCAGCATT 58.665 40.909 5.89 0.00 0.00 3.56
79 80 2.972625 TCTTCGATTCGTTTCCAGCAT 58.027 42.857 5.89 0.00 0.00 3.79
80 81 2.448926 TCTTCGATTCGTTTCCAGCA 57.551 45.000 5.89 0.00 0.00 4.41
81 82 3.863424 TGTATCTTCGATTCGTTTCCAGC 59.137 43.478 5.89 0.00 0.00 4.85
82 83 4.267928 GGTGTATCTTCGATTCGTTTCCAG 59.732 45.833 5.89 0.00 0.00 3.86
83 84 4.178540 GGTGTATCTTCGATTCGTTTCCA 58.821 43.478 5.89 0.00 0.00 3.53
84 85 3.242248 CGGTGTATCTTCGATTCGTTTCC 59.758 47.826 5.89 0.00 0.00 3.13
85 86 3.855950 ACGGTGTATCTTCGATTCGTTTC 59.144 43.478 5.89 0.00 0.00 2.78
86 87 3.611113 CACGGTGTATCTTCGATTCGTTT 59.389 43.478 5.89 0.00 0.00 3.60
87 88 3.176708 CACGGTGTATCTTCGATTCGTT 58.823 45.455 5.89 0.00 0.00 3.85
88 89 2.163010 ACACGGTGTATCTTCGATTCGT 59.837 45.455 12.96 0.00 0.00 3.85
89 90 2.530297 CACACGGTGTATCTTCGATTCG 59.470 50.000 14.30 0.00 0.00 3.34
90 91 2.281762 GCACACGGTGTATCTTCGATTC 59.718 50.000 14.30 0.00 35.75 2.52
91 92 2.268298 GCACACGGTGTATCTTCGATT 58.732 47.619 14.30 0.00 35.75 3.34
92 93 1.797713 CGCACACGGTGTATCTTCGAT 60.798 52.381 14.30 0.00 35.75 3.59
93 94 0.455464 CGCACACGGTGTATCTTCGA 60.455 55.000 14.30 0.00 35.75 3.71
94 95 0.455464 TCGCACACGGTGTATCTTCG 60.455 55.000 14.30 11.92 40.63 3.79
95 96 1.269166 CTCGCACACGGTGTATCTTC 58.731 55.000 14.30 0.65 40.63 2.87
96 97 0.601558 ACTCGCACACGGTGTATCTT 59.398 50.000 14.30 0.00 40.63 2.40
97 98 0.601558 AACTCGCACACGGTGTATCT 59.398 50.000 14.30 0.00 40.63 1.98
98 99 0.713883 CAACTCGCACACGGTGTATC 59.286 55.000 14.30 7.94 40.63 2.24
99 100 0.669318 CCAACTCGCACACGGTGTAT 60.669 55.000 14.30 0.00 40.63 2.29
100 101 1.300311 CCAACTCGCACACGGTGTA 60.300 57.895 14.30 0.00 40.63 2.90
101 102 2.581208 TTCCAACTCGCACACGGTGT 62.581 55.000 8.21 8.21 40.63 4.16
102 103 1.433053 TTTCCAACTCGCACACGGTG 61.433 55.000 6.58 6.58 40.63 4.94
103 104 1.153329 TTTCCAACTCGCACACGGT 60.153 52.632 0.00 0.00 40.63 4.83
104 105 1.278637 GTTTCCAACTCGCACACGG 59.721 57.895 0.00 0.00 40.63 4.94
105 106 0.375454 TTGTTTCCAACTCGCACACG 59.625 50.000 0.00 0.00 42.01 4.49
106 107 2.604614 GGATTGTTTCCAACTCGCACAC 60.605 50.000 0.00 0.00 44.74 3.82
107 108 1.606668 GGATTGTTTCCAACTCGCACA 59.393 47.619 0.00 0.00 44.74 4.57
108 109 2.331809 GGATTGTTTCCAACTCGCAC 57.668 50.000 0.00 0.00 44.74 5.34
117 118 2.930682 GCTACTCTCGTGGATTGTTTCC 59.069 50.000 0.00 0.00 45.69 3.13
118 119 3.585862 TGCTACTCTCGTGGATTGTTTC 58.414 45.455 0.00 0.00 0.00 2.78
119 120 3.589988 CTGCTACTCTCGTGGATTGTTT 58.410 45.455 0.00 0.00 0.00 2.83
120 121 2.675317 GCTGCTACTCTCGTGGATTGTT 60.675 50.000 0.00 0.00 0.00 2.83
121 122 1.134965 GCTGCTACTCTCGTGGATTGT 60.135 52.381 0.00 0.00 0.00 2.71
122 123 1.134995 TGCTGCTACTCTCGTGGATTG 60.135 52.381 0.00 0.00 0.00 2.67
123 124 1.186200 TGCTGCTACTCTCGTGGATT 58.814 50.000 0.00 0.00 0.00 3.01
124 125 1.407936 ATGCTGCTACTCTCGTGGAT 58.592 50.000 0.00 0.00 0.00 3.41
125 126 2.052782 TATGCTGCTACTCTCGTGGA 57.947 50.000 0.00 0.00 0.00 4.02
126 127 2.608998 CCATATGCTGCTACTCTCGTGG 60.609 54.545 0.00 0.00 0.00 4.94
127 128 2.035193 ACCATATGCTGCTACTCTCGTG 59.965 50.000 0.00 0.00 0.00 4.35
128 129 2.035193 CACCATATGCTGCTACTCTCGT 59.965 50.000 0.00 0.00 0.00 4.18
129 130 2.670479 CACCATATGCTGCTACTCTCG 58.330 52.381 0.00 0.00 0.00 4.04
141 142 9.539825 GAGTCTTAGATATATTGGCACCATATG 57.460 37.037 5.07 0.00 0.00 1.78
142 143 8.709308 GGAGTCTTAGATATATTGGCACCATAT 58.291 37.037 0.00 0.00 0.00 1.78
143 144 7.678171 TGGAGTCTTAGATATATTGGCACCATA 59.322 37.037 0.00 0.00 0.00 2.74
144 145 6.501805 TGGAGTCTTAGATATATTGGCACCAT 59.498 38.462 0.00 0.00 0.00 3.55
145 146 5.843969 TGGAGTCTTAGATATATTGGCACCA 59.156 40.000 0.00 0.00 0.00 4.17
146 147 6.360370 TGGAGTCTTAGATATATTGGCACC 57.640 41.667 0.00 0.00 0.00 5.01
147 148 7.148340 GCAATGGAGTCTTAGATATATTGGCAC 60.148 40.741 0.00 0.00 0.00 5.01
148 149 6.881065 GCAATGGAGTCTTAGATATATTGGCA 59.119 38.462 0.00 0.00 0.00 4.92
149 150 6.881065 TGCAATGGAGTCTTAGATATATTGGC 59.119 38.462 0.00 0.00 0.00 4.52
150 151 8.890718 CATGCAATGGAGTCTTAGATATATTGG 58.109 37.037 0.00 0.00 41.79 3.16
151 152 8.396390 GCATGCAATGGAGTCTTAGATATATTG 58.604 37.037 14.21 0.00 46.86 1.90
152 153 8.105197 TGCATGCAATGGAGTCTTAGATATATT 58.895 33.333 20.30 0.00 46.86 1.28
153 154 7.627311 TGCATGCAATGGAGTCTTAGATATAT 58.373 34.615 20.30 0.00 46.86 0.86
154 155 7.008021 TGCATGCAATGGAGTCTTAGATATA 57.992 36.000 20.30 0.00 46.86 0.86
155 156 5.872963 TGCATGCAATGGAGTCTTAGATAT 58.127 37.500 20.30 0.00 46.86 1.63
156 157 5.294734 TGCATGCAATGGAGTCTTAGATA 57.705 39.130 20.30 0.00 46.86 1.98
157 158 4.160642 TGCATGCAATGGAGTCTTAGAT 57.839 40.909 20.30 0.00 46.86 1.98
158 159 3.632643 TGCATGCAATGGAGTCTTAGA 57.367 42.857 20.30 0.00 46.86 2.10
167 168 4.304110 GAGGTAATTGATGCATGCAATGG 58.696 43.478 26.68 0.00 46.86 3.16
169 170 3.962063 TGGAGGTAATTGATGCATGCAAT 59.038 39.130 26.68 11.34 37.56 3.56
170 171 3.363627 TGGAGGTAATTGATGCATGCAA 58.636 40.909 26.68 9.06 0.00 4.08
171 172 3.015675 TGGAGGTAATTGATGCATGCA 57.984 42.857 25.04 25.04 0.00 3.96
172 173 3.797865 GCTTGGAGGTAATTGATGCATGC 60.798 47.826 11.82 11.82 0.00 4.06
173 174 3.382227 TGCTTGGAGGTAATTGATGCATG 59.618 43.478 2.46 0.00 0.00 4.06
174 175 3.634504 TGCTTGGAGGTAATTGATGCAT 58.365 40.909 0.00 0.00 0.00 3.96
175 176 3.018856 CTGCTTGGAGGTAATTGATGCA 58.981 45.455 0.00 0.00 0.00 3.96
176 177 3.019564 ACTGCTTGGAGGTAATTGATGC 58.980 45.455 0.00 0.00 0.00 3.91
177 178 4.264253 TGACTGCTTGGAGGTAATTGATG 58.736 43.478 0.00 0.00 0.00 3.07
178 179 4.225942 TCTGACTGCTTGGAGGTAATTGAT 59.774 41.667 0.00 0.00 0.00 2.57
179 180 3.582647 TCTGACTGCTTGGAGGTAATTGA 59.417 43.478 0.00 0.00 0.00 2.57
180 181 3.942829 TCTGACTGCTTGGAGGTAATTG 58.057 45.455 0.00 0.00 0.00 2.32
181 182 4.851639 ATCTGACTGCTTGGAGGTAATT 57.148 40.909 0.00 0.00 0.00 1.40
182 183 4.225942 TGAATCTGACTGCTTGGAGGTAAT 59.774 41.667 0.00 0.00 0.00 1.89
183 184 3.582647 TGAATCTGACTGCTTGGAGGTAA 59.417 43.478 0.00 0.00 0.00 2.85
184 185 3.173151 TGAATCTGACTGCTTGGAGGTA 58.827 45.455 0.00 0.00 0.00 3.08
185 186 1.980765 TGAATCTGACTGCTTGGAGGT 59.019 47.619 0.00 0.00 0.00 3.85
186 187 2.746362 GTTGAATCTGACTGCTTGGAGG 59.254 50.000 0.00 0.00 0.00 4.30
187 188 2.414481 CGTTGAATCTGACTGCTTGGAG 59.586 50.000 0.00 0.00 0.00 3.86
188 189 2.037121 TCGTTGAATCTGACTGCTTGGA 59.963 45.455 0.00 0.00 0.00 3.53
189 190 2.416747 TCGTTGAATCTGACTGCTTGG 58.583 47.619 0.00 0.00 0.00 3.61
190 191 3.681417 TCATCGTTGAATCTGACTGCTTG 59.319 43.478 0.00 0.00 0.00 4.01
191 192 3.930336 TCATCGTTGAATCTGACTGCTT 58.070 40.909 0.00 0.00 0.00 3.91
192 193 3.599730 TCATCGTTGAATCTGACTGCT 57.400 42.857 0.00 0.00 0.00 4.24
193 194 3.247173 GGATCATCGTTGAATCTGACTGC 59.753 47.826 0.00 0.00 34.96 4.40
194 195 4.691175 AGGATCATCGTTGAATCTGACTG 58.309 43.478 0.00 0.00 34.96 3.51
195 196 5.114780 CAAGGATCATCGTTGAATCTGACT 58.885 41.667 13.85 0.00 42.87 3.41
196 197 4.260538 GCAAGGATCATCGTTGAATCTGAC 60.261 45.833 21.66 0.91 42.87 3.51
197 198 3.873361 GCAAGGATCATCGTTGAATCTGA 59.127 43.478 21.66 0.00 42.87 3.27
198 199 3.624410 TGCAAGGATCATCGTTGAATCTG 59.376 43.478 21.66 0.00 42.87 2.90
199 200 3.624861 GTGCAAGGATCATCGTTGAATCT 59.375 43.478 21.66 0.00 42.87 2.40
200 201 3.374988 TGTGCAAGGATCATCGTTGAATC 59.625 43.478 21.66 11.66 42.87 2.52
201 202 3.127548 GTGTGCAAGGATCATCGTTGAAT 59.872 43.478 21.66 0.00 42.87 2.57
202 203 2.483877 GTGTGCAAGGATCATCGTTGAA 59.516 45.455 21.66 10.30 42.87 2.69
203 204 2.076100 GTGTGCAAGGATCATCGTTGA 58.924 47.619 21.66 6.27 42.87 3.18
204 205 1.131126 GGTGTGCAAGGATCATCGTTG 59.869 52.381 14.60 14.60 43.03 4.10
205 206 1.453155 GGTGTGCAAGGATCATCGTT 58.547 50.000 0.00 0.00 0.00 3.85
206 207 0.392998 GGGTGTGCAAGGATCATCGT 60.393 55.000 0.00 0.00 0.00 3.73
207 208 0.392863 TGGGTGTGCAAGGATCATCG 60.393 55.000 0.00 0.00 0.00 3.84
208 209 1.838112 TTGGGTGTGCAAGGATCATC 58.162 50.000 0.00 0.00 0.00 2.92
209 210 2.024655 AGATTGGGTGTGCAAGGATCAT 60.025 45.455 0.00 0.00 0.00 2.45
210 211 1.355381 AGATTGGGTGTGCAAGGATCA 59.645 47.619 0.00 0.00 0.00 2.92
211 212 1.747355 CAGATTGGGTGTGCAAGGATC 59.253 52.381 0.00 0.00 0.00 3.36
212 213 1.843368 CAGATTGGGTGTGCAAGGAT 58.157 50.000 0.00 0.00 0.00 3.24
213 214 0.895100 GCAGATTGGGTGTGCAAGGA 60.895 55.000 0.00 0.00 45.85 3.36
214 215 1.588082 GCAGATTGGGTGTGCAAGG 59.412 57.895 0.00 0.00 45.85 3.61
218 219 0.242017 GTTCAGCAGATTGGGTGTGC 59.758 55.000 0.00 0.00 46.86 4.57
219 220 1.608055 TGTTCAGCAGATTGGGTGTG 58.392 50.000 0.00 0.00 37.53 3.82
220 221 2.233271 CTTGTTCAGCAGATTGGGTGT 58.767 47.619 0.00 0.00 37.53 4.16
221 222 2.233271 ACTTGTTCAGCAGATTGGGTG 58.767 47.619 0.00 0.00 37.61 4.61
222 223 2.624838 CAACTTGTTCAGCAGATTGGGT 59.375 45.455 0.00 0.00 0.00 4.51
223 224 2.029649 CCAACTTGTTCAGCAGATTGGG 60.030 50.000 1.52 0.00 38.88 4.12
224 225 2.886523 TCCAACTTGTTCAGCAGATTGG 59.113 45.455 2.81 2.81 41.53 3.16
225 226 3.611057 GCTCCAACTTGTTCAGCAGATTG 60.611 47.826 8.36 0.00 0.00 2.67
226 227 2.555757 GCTCCAACTTGTTCAGCAGATT 59.444 45.455 8.36 0.00 0.00 2.40
227 228 2.157738 GCTCCAACTTGTTCAGCAGAT 58.842 47.619 8.36 0.00 0.00 2.90
228 229 1.597742 GCTCCAACTTGTTCAGCAGA 58.402 50.000 8.36 0.00 0.00 4.26
229 230 0.595095 GGCTCCAACTTGTTCAGCAG 59.405 55.000 13.01 0.00 0.00 4.24
230 231 0.823356 GGGCTCCAACTTGTTCAGCA 60.823 55.000 13.01 0.00 0.00 4.41
231 232 0.538287 AGGGCTCCAACTTGTTCAGC 60.538 55.000 5.74 5.74 0.00 4.26
232 233 1.202806 TGAGGGCTCCAACTTGTTCAG 60.203 52.381 0.00 0.00 0.00 3.02
233 234 0.843309 TGAGGGCTCCAACTTGTTCA 59.157 50.000 0.00 0.00 0.00 3.18
234 235 1.609072 GTTGAGGGCTCCAACTTGTTC 59.391 52.381 9.83 0.00 40.37 3.18
235 236 1.692411 GTTGAGGGCTCCAACTTGTT 58.308 50.000 9.83 0.00 40.37 2.83
236 237 0.535102 CGTTGAGGGCTCCAACTTGT 60.535 55.000 13.75 0.00 41.11 3.16
237 238 0.250295 TCGTTGAGGGCTCCAACTTG 60.250 55.000 13.75 2.75 41.11 3.16
238 239 0.472471 TTCGTTGAGGGCTCCAACTT 59.528 50.000 13.75 0.00 41.11 2.66
239 240 0.035458 CTTCGTTGAGGGCTCCAACT 59.965 55.000 13.75 0.00 41.11 3.16
240 241 0.250338 ACTTCGTTGAGGGCTCCAAC 60.250 55.000 7.62 7.62 40.19 3.77
241 242 0.250295 CACTTCGTTGAGGGCTCCAA 60.250 55.000 0.00 0.00 0.00 3.53
242 243 1.371183 CACTTCGTTGAGGGCTCCA 59.629 57.895 0.00 0.00 0.00 3.86
243 244 2.035442 GCACTTCGTTGAGGGCTCC 61.035 63.158 3.76 0.00 42.81 4.70
244 245 3.567473 GCACTTCGTTGAGGGCTC 58.433 61.111 3.76 0.00 42.81 4.70
246 247 1.464997 CTTTAGCACTTCGTTGAGGGC 59.535 52.381 2.92 2.92 46.51 5.19
247 248 1.464997 GCTTTAGCACTTCGTTGAGGG 59.535 52.381 0.00 0.00 41.59 4.30
248 249 2.417719 AGCTTTAGCACTTCGTTGAGG 58.582 47.619 4.33 0.00 45.16 3.86
249 250 3.120511 GGAAGCTTTAGCACTTCGTTGAG 60.121 47.826 0.00 0.00 42.62 3.02
250 251 2.806244 GGAAGCTTTAGCACTTCGTTGA 59.194 45.455 0.00 0.00 42.62 3.18
251 252 2.411547 CGGAAGCTTTAGCACTTCGTTG 60.412 50.000 0.00 0.00 42.62 4.10
252 253 1.798813 CGGAAGCTTTAGCACTTCGTT 59.201 47.619 0.00 0.00 42.62 3.85
253 254 1.429463 CGGAAGCTTTAGCACTTCGT 58.571 50.000 0.00 0.00 42.62 3.85
282 283 1.083489 CTTTGGCCATGCAGCAAATG 58.917 50.000 6.09 0.00 0.00 2.32
283 284 0.035820 CCTTTGGCCATGCAGCAAAT 60.036 50.000 6.09 0.00 0.00 2.32
284 285 1.371932 CCTTTGGCCATGCAGCAAA 59.628 52.632 6.09 0.00 0.00 3.68
285 286 2.585341 CCCTTTGGCCATGCAGCAA 61.585 57.895 6.09 0.00 0.00 3.91
286 287 2.998480 CCCTTTGGCCATGCAGCA 60.998 61.111 6.09 0.00 0.00 4.41
296 297 1.743252 GAGTCGCTGAGCCCTTTGG 60.743 63.158 0.00 0.00 0.00 3.28
297 298 1.743252 GGAGTCGCTGAGCCCTTTG 60.743 63.158 0.00 0.00 0.00 2.77
298 299 2.177594 CTGGAGTCGCTGAGCCCTTT 62.178 60.000 0.00 0.00 0.00 3.11
299 300 2.604686 TGGAGTCGCTGAGCCCTT 60.605 61.111 0.00 0.00 0.00 3.95
300 301 3.073735 CTGGAGTCGCTGAGCCCT 61.074 66.667 0.00 0.00 0.00 5.19
301 302 4.828925 GCTGGAGTCGCTGAGCCC 62.829 72.222 0.00 0.00 0.00 5.19
302 303 4.828925 GGCTGGAGTCGCTGAGCC 62.829 72.222 0.00 0.00 44.10 4.70
303 304 3.382803 ATGGCTGGAGTCGCTGAGC 62.383 63.158 0.00 0.00 0.00 4.26
304 305 1.521010 CATGGCTGGAGTCGCTGAG 60.521 63.158 0.00 0.00 0.00 3.35
305 306 2.580815 CATGGCTGGAGTCGCTGA 59.419 61.111 0.00 0.00 0.00 4.26
306 307 2.513204 CCATGGCTGGAGTCGCTG 60.513 66.667 0.00 0.00 46.37 5.18
307 308 4.479993 GCCATGGCTGGAGTCGCT 62.480 66.667 29.98 0.00 46.37 4.93
309 310 3.746949 GAGGCCATGGCTGGAGTCG 62.747 68.421 34.70 0.00 46.37 4.18
310 311 2.191641 GAGGCCATGGCTGGAGTC 59.808 66.667 34.70 17.88 46.37 3.36
329 330 3.369147 GCGATCATGAGGAATAATCGTGG 59.631 47.826 12.63 0.00 40.86 4.94
368 369 3.928727 TGCAGCTTTCTTTGAAGATGG 57.071 42.857 5.22 0.00 41.90 3.51
400 401 0.322098 CAGCACCCGGGTCATACAAA 60.322 55.000 27.51 0.00 0.00 2.83
526 527 2.165301 GCAGATCGGTGCCACGTAC 61.165 63.158 0.00 0.00 37.49 3.67
545 546 2.557920 AACCAGTGAGCCAGAGAAAG 57.442 50.000 0.00 0.00 0.00 2.62
568 569 0.742990 CGCTTTGGAACATCCCGCTA 60.743 55.000 0.00 0.00 39.30 4.26
684 695 4.209538 TGTGTGTGTACTGTGTACTAGGT 58.790 43.478 8.94 0.00 0.00 3.08
714 728 2.087462 CTCCGTGTCTGCCTCACACA 62.087 60.000 9.74 0.00 43.79 3.72
715 729 1.373497 CTCCGTGTCTGCCTCACAC 60.373 63.158 0.85 0.85 40.75 3.82
716 730 2.574018 CCTCCGTGTCTGCCTCACA 61.574 63.158 0.00 0.00 35.79 3.58
717 731 2.262915 CCTCCGTGTCTGCCTCAC 59.737 66.667 0.00 0.00 0.00 3.51
718 732 3.695606 GCCTCCGTGTCTGCCTCA 61.696 66.667 0.00 0.00 0.00 3.86
761 783 2.037367 CGTGACTCCTCCCTCCCA 59.963 66.667 0.00 0.00 0.00 4.37
1088 1119 4.785453 CCACCCGCCTTCTCCTGC 62.785 72.222 0.00 0.00 0.00 4.85
1126 1157 0.037447 GCCTTCAAGCTCCTCCACTT 59.963 55.000 0.00 0.00 0.00 3.16
1194 1225 2.852075 TCGGCAAACTCCACCCCT 60.852 61.111 0.00 0.00 0.00 4.79
1206 1237 1.748122 GTAGTCCTCCTCGTCGGCA 60.748 63.158 0.00 0.00 0.00 5.69
1345 1376 3.886505 AGATACCACTAGCAGTAGCAGAC 59.113 47.826 9.80 0.00 45.49 3.51
1347 1378 4.098654 ACAAGATACCACTAGCAGTAGCAG 59.901 45.833 9.80 5.37 45.49 4.24
1775 1856 6.938030 ACAAAATTTCACACGGGAGTAGATTA 59.062 34.615 0.00 0.00 44.67 1.75
1840 1921 3.891977 TGGATGGATTTTTGTTCGGACAA 59.108 39.130 4.79 4.79 43.73 3.18
2018 2101 5.771165 ACACCCCTACACGAACATTAAATTT 59.229 36.000 0.00 0.00 0.00 1.82
2179 2262 1.446366 GGCGACCCAAGACTATCCC 59.554 63.158 0.00 0.00 0.00 3.85
2230 2318 7.521529 CAAGACCAAATACATTGTGTACTCTG 58.478 38.462 0.00 0.00 35.42 3.35
2978 3298 5.557136 GCGACTGAATTCCAAGATCGTTATG 60.557 44.000 2.27 0.00 31.31 1.90
2979 3299 4.508124 GCGACTGAATTCCAAGATCGTTAT 59.492 41.667 2.27 0.00 31.31 1.89
3120 3440 7.309194 CCACAATATACTACTCGATGTCCATCA 60.309 40.741 7.94 0.00 37.69 3.07
3373 3695 1.889170 TGAACTGGTGCACAAACAACA 59.111 42.857 20.43 8.34 35.52 3.33
3649 3973 6.714810 TCTTTTGAAGCTAAGCATGTTTCCTA 59.285 34.615 0.00 0.00 0.00 2.94
4450 4777 7.018826 TGTATTCGCGAAAAAGGAAATACTTG 58.981 34.615 27.23 0.00 0.00 3.16
4468 4795 3.799035 GCATCCTTGCGTATTGTATTCG 58.201 45.455 0.00 0.00 39.49 3.34
4894 5229 6.183361 ACCAAACCTAAAATTAAACCATGGCA 60.183 34.615 13.04 0.00 0.00 4.92
5172 5508 1.762522 ATCCCAGCGATGCTCCGATT 61.763 55.000 0.00 0.00 36.40 3.34
5186 5522 1.224315 CCACTGCGAATGGATCCCA 59.776 57.895 9.90 0.00 39.87 4.37
5189 5525 1.017387 GGTTCCACTGCGAATGGATC 58.983 55.000 4.40 4.23 45.71 3.36
5198 5534 1.026182 TGCATCATCGGTTCCACTGC 61.026 55.000 0.00 0.00 0.00 4.40
5200 5536 0.107508 CCTGCATCATCGGTTCCACT 60.108 55.000 0.00 0.00 0.00 4.00
5419 5755 1.981533 CGGAAGAAAGTTACGACGGAC 59.018 52.381 0.00 0.00 0.00 4.79
5420 5756 1.666888 GCGGAAGAAAGTTACGACGGA 60.667 52.381 0.00 0.00 0.00 4.69
5421 5757 0.712222 GCGGAAGAAAGTTACGACGG 59.288 55.000 0.00 0.00 0.00 4.79
5456 5792 5.509498 TGCACTAGCTTTATGGGAGAAATT 58.491 37.500 0.00 0.00 42.74 1.82
5492 5860 1.647545 AATCCATCTGCGCAACACCG 61.648 55.000 13.05 0.00 0.00 4.94
5551 5925 3.393941 AGGGGACAAAGATCTCCATCATC 59.606 47.826 0.00 0.00 42.39 2.92
5617 5995 1.068194 GTGAGTGAGGAGACACGAAGG 60.068 57.143 0.00 0.00 44.35 3.46
5619 5997 1.880675 GAGTGAGTGAGGAGACACGAA 59.119 52.381 0.00 0.00 44.35 3.85
5622 6000 2.822561 TGATGAGTGAGTGAGGAGACAC 59.177 50.000 0.00 0.00 40.60 3.67
5623 6001 3.160679 TGATGAGTGAGTGAGGAGACA 57.839 47.619 0.00 0.00 0.00 3.41
5624 6002 3.675775 GCTTGATGAGTGAGTGAGGAGAC 60.676 52.174 0.00 0.00 0.00 3.36
5625 6003 2.495270 GCTTGATGAGTGAGTGAGGAGA 59.505 50.000 0.00 0.00 0.00 3.71
5626 6004 2.233186 TGCTTGATGAGTGAGTGAGGAG 59.767 50.000 0.00 0.00 0.00 3.69
5627 6005 2.028658 GTGCTTGATGAGTGAGTGAGGA 60.029 50.000 0.00 0.00 0.00 3.71
5628 6006 2.344950 GTGCTTGATGAGTGAGTGAGG 58.655 52.381 0.00 0.00 0.00 3.86
5672 6050 2.005560 GCGGAGTAAAAAGGACCGGAG 61.006 57.143 9.46 0.00 43.15 4.63
5673 6051 0.037046 GCGGAGTAAAAAGGACCGGA 60.037 55.000 9.46 0.00 43.15 5.14
5674 6052 1.356527 CGCGGAGTAAAAAGGACCGG 61.357 60.000 0.00 0.00 43.15 5.28
5675 6053 0.668401 ACGCGGAGTAAAAAGGACCG 60.668 55.000 12.47 0.00 45.26 4.79
5676 6054 2.368655 TACGCGGAGTAAAAAGGACC 57.631 50.000 12.47 0.00 31.26 4.46
5677 6055 3.514645 TCATACGCGGAGTAAAAAGGAC 58.485 45.455 12.47 0.00 39.04 3.85
5678 6056 3.444742 TCTCATACGCGGAGTAAAAAGGA 59.555 43.478 12.47 0.00 39.04 3.36
5679 6057 3.777478 TCTCATACGCGGAGTAAAAAGG 58.223 45.455 12.47 0.00 39.04 3.11
5680 6058 5.968387 ATTCTCATACGCGGAGTAAAAAG 57.032 39.130 12.47 0.00 39.04 2.27
5681 6059 5.640357 ACAATTCTCATACGCGGAGTAAAAA 59.360 36.000 12.47 0.00 39.04 1.94
5682 6060 5.172934 ACAATTCTCATACGCGGAGTAAAA 58.827 37.500 12.47 0.00 39.04 1.52
5683 6061 4.751060 ACAATTCTCATACGCGGAGTAAA 58.249 39.130 12.47 0.00 39.04 2.01
5684 6062 4.142337 TGACAATTCTCATACGCGGAGTAA 60.142 41.667 12.47 4.85 39.04 2.24
5685 6063 3.379057 TGACAATTCTCATACGCGGAGTA 59.621 43.478 12.47 1.44 40.03 2.59
5686 6064 2.165641 TGACAATTCTCATACGCGGAGT 59.834 45.455 12.47 0.00 34.04 3.85
5687 6065 2.791560 CTGACAATTCTCATACGCGGAG 59.208 50.000 12.47 7.90 0.00 4.63
5688 6066 2.425668 TCTGACAATTCTCATACGCGGA 59.574 45.455 12.47 0.00 0.00 5.54
5689 6067 2.809446 TCTGACAATTCTCATACGCGG 58.191 47.619 12.47 0.00 0.00 6.46
5690 6068 3.859961 ACTTCTGACAATTCTCATACGCG 59.140 43.478 3.53 3.53 0.00 6.01
5691 6069 4.864806 TGACTTCTGACAATTCTCATACGC 59.135 41.667 0.00 0.00 0.00 4.42
5692 6070 6.951256 TTGACTTCTGACAATTCTCATACG 57.049 37.500 0.00 0.00 0.00 3.06
5693 6071 8.316640 AGTTTGACTTCTGACAATTCTCATAC 57.683 34.615 0.00 0.00 0.00 2.39
5694 6072 8.908786 AAGTTTGACTTCTGACAATTCTCATA 57.091 30.769 0.00 0.00 31.77 2.15
5695 6073 7.814264 AAGTTTGACTTCTGACAATTCTCAT 57.186 32.000 0.00 0.00 31.77 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.