Multiple sequence alignment - TraesCS3D01G209300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G209300 chr3D 100.000 4670 0 0 1 4670 276746403 276751072 0.000000e+00 8624.0
1 TraesCS3D01G209300 chr3A 92.711 3416 144 36 511 3875 362905032 362901671 0.000000e+00 4831.0
2 TraesCS3D01G209300 chr3A 95.882 777 22 4 3892 4658 362901685 362900909 0.000000e+00 1249.0
3 TraesCS3D01G209300 chr3A 82.143 112 18 2 201 311 362908219 362908109 1.380000e-15 95.3
4 TraesCS3D01G209300 chr3B 94.656 2863 90 18 1813 4624 373624545 373621695 0.000000e+00 4381.0
5 TraesCS3D01G209300 chr3B 87.968 1122 45 32 731 1828 373625649 373624594 0.000000e+00 1242.0
6 TraesCS3D01G209300 chr3B 94.737 76 4 0 215 290 373626193 373626118 8.210000e-23 119.0
7 TraesCS3D01G209300 chr5D 88.667 150 7 3 328 468 339984364 339984512 1.730000e-39 174.0
8 TraesCS3D01G209300 chr5D 91.538 130 2 2 348 468 312056480 312056351 2.230000e-38 171.0
9 TraesCS3D01G209300 chr2A 87.417 151 9 3 328 469 105032084 105031935 1.040000e-36 165.0
10 TraesCS3D01G209300 chr2A 100.000 68 0 0 401 468 613334267 613334334 4.910000e-25 126.0
11 TraesCS3D01G209300 chr6A 86.000 150 12 3 328 468 446722503 446722354 8.090000e-33 152.0
12 TraesCS3D01G209300 chr2B 90.756 119 3 2 358 468 11386061 11385943 8.090000e-33 152.0
13 TraesCS3D01G209300 chr2B 86.207 116 5 3 364 468 737933813 737933928 1.060000e-21 115.0
14 TraesCS3D01G209300 chr6B 88.430 121 5 2 332 443 171422784 171422664 2.270000e-28 137.0
15 TraesCS3D01G209300 chr5B 84.211 95 13 2 3 97 71952939 71952847 1.790000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G209300 chr3D 276746403 276751072 4669 False 8624.000000 8624 100.000000 1 4670 1 chr3D.!!$F1 4669
1 TraesCS3D01G209300 chr3A 362900909 362908219 7310 True 2058.433333 4831 90.245333 201 4658 3 chr3A.!!$R1 4457
2 TraesCS3D01G209300 chr3B 373621695 373626193 4498 True 1914.000000 4381 92.453667 215 4624 3 chr3B.!!$R1 4409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 361 0.028902 CACACGACGATATCCAGCGA 59.971 55.0 0.0 0.0 36.93 4.93 F
393 395 0.038599 ACAAGATCACATGCCCAGCA 59.961 50.0 0.0 0.0 44.86 4.41 F
442 444 0.102300 TCGGCTGGATGTCGTGTATG 59.898 55.0 0.0 0.0 45.15 2.39 F
475 477 0.108585 AGAGCAGTTTCGGCCTCAAA 59.891 50.0 0.0 0.0 0.00 2.69 F
763 3853 0.108804 ACGAATCACTGCCTACCACG 60.109 55.0 0.0 0.0 0.00 4.94 F
1423 4542 0.339859 ATAGTGGTGAGGAGGGCAGA 59.660 55.0 0.0 0.0 0.00 4.26 F
1425 4544 0.339859 AGTGGTGAGGAGGGCAGATA 59.660 55.0 0.0 0.0 0.00 1.98 F
1474 4593 0.804989 GAAACATGGGTTCCTCGCAG 59.195 55.0 0.0 0.0 42.07 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 4773 0.029300 CACCACAAGCAACGGAACTG 59.971 55.000 0.0 0.0 0.00 3.16 R
1655 4774 0.107410 TCACCACAAGCAACGGAACT 60.107 50.000 0.0 0.0 0.00 3.01 R
1656 4775 0.951558 ATCACCACAAGCAACGGAAC 59.048 50.000 0.0 0.0 0.00 3.62 R
2240 5438 1.549203 AACCATGAGCCAATGTGACC 58.451 50.000 0.0 0.0 0.00 4.02 R
2536 5734 2.159282 GCATTCCAAGCATTCACCTGAG 60.159 50.000 0.0 0.0 0.00 3.35 R
3113 6313 2.094286 ACAGGTCAGAAGCGAATCAGAG 60.094 50.000 0.0 0.0 0.00 3.35 R
3385 6585 3.496884 TCGTGAAACCAATAGCAACTGAC 59.503 43.478 0.0 0.0 0.00 3.51 R
3708 6910 7.113544 GCAGCTCAAAACTACTGTACATTTTTC 59.886 37.037 0.0 0.0 32.65 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.275781 CTGGTGCAGGGGTTTGTT 57.724 55.556 0.00 0.00 0.00 2.83
24 25 3.430473 CTGGTGCAGGGGTTTGTTA 57.570 52.632 0.00 0.00 0.00 2.41
25 26 0.958822 CTGGTGCAGGGGTTTGTTAC 59.041 55.000 0.00 0.00 0.00 2.50
26 27 0.820074 TGGTGCAGGGGTTTGTTACG 60.820 55.000 0.00 0.00 0.00 3.18
27 28 1.284715 GTGCAGGGGTTTGTTACGC 59.715 57.895 0.00 0.00 38.89 4.42
32 33 3.347168 GGGTTTGTTACGCCGCTT 58.653 55.556 0.00 0.00 33.80 4.68
33 34 1.208358 GGGTTTGTTACGCCGCTTC 59.792 57.895 0.00 0.00 33.80 3.86
34 35 1.232621 GGGTTTGTTACGCCGCTTCT 61.233 55.000 0.00 0.00 33.80 2.85
35 36 0.589708 GGTTTGTTACGCCGCTTCTT 59.410 50.000 0.00 0.00 0.00 2.52
36 37 1.002142 GGTTTGTTACGCCGCTTCTTT 60.002 47.619 0.00 0.00 0.00 2.52
37 38 2.304413 GTTTGTTACGCCGCTTCTTTC 58.696 47.619 0.00 0.00 0.00 2.62
38 39 0.509499 TTGTTACGCCGCTTCTTTCG 59.491 50.000 0.00 0.00 0.00 3.46
44 45 3.788766 CCGCTTCTTTCGGCCGTG 61.789 66.667 27.15 16.50 40.46 4.94
45 46 3.041940 CGCTTCTTTCGGCCGTGT 61.042 61.111 27.15 0.00 0.00 4.49
46 47 1.735198 CGCTTCTTTCGGCCGTGTA 60.735 57.895 27.15 9.28 0.00 2.90
47 48 1.785951 GCTTCTTTCGGCCGTGTAC 59.214 57.895 27.15 5.76 0.00 2.90
48 49 1.952266 GCTTCTTTCGGCCGTGTACG 61.952 60.000 27.15 11.56 39.44 3.67
49 50 0.665369 CTTCTTTCGGCCGTGTACGT 60.665 55.000 27.15 0.00 37.74 3.57
50 51 0.249405 TTCTTTCGGCCGTGTACGTT 60.249 50.000 27.15 0.00 37.74 3.99
51 52 0.664166 TCTTTCGGCCGTGTACGTTC 60.664 55.000 27.15 0.00 37.74 3.95
52 53 1.937196 CTTTCGGCCGTGTACGTTCG 61.937 60.000 27.15 6.93 37.74 3.95
58 59 4.443263 CGTGTACGTTCGCGCGTG 62.443 66.667 30.98 22.15 45.33 5.34
59 60 4.112256 GTGTACGTTCGCGCGTGG 62.112 66.667 30.98 21.22 45.33 4.94
62 63 4.644230 TACGTTCGCGCGTGGGTT 62.644 61.111 30.98 13.79 45.33 4.11
65 66 3.641986 GTTCGCGCGTGGGTTTGA 61.642 61.111 30.98 4.20 0.00 2.69
66 67 2.895865 TTCGCGCGTGGGTTTGAA 60.896 55.556 30.98 11.22 0.00 2.69
67 68 2.255172 TTCGCGCGTGGGTTTGAAT 61.255 52.632 30.98 0.00 0.00 2.57
68 69 2.177654 TTCGCGCGTGGGTTTGAATC 62.178 55.000 30.98 0.00 0.00 2.52
69 70 2.178273 GCGCGTGGGTTTGAATCC 59.822 61.111 8.43 0.00 0.00 3.01
70 71 2.874751 CGCGTGGGTTTGAATCCC 59.125 61.111 4.32 4.32 44.81 3.85
76 77 2.563297 GGGTTTGAATCCCACGTCC 58.437 57.895 6.45 0.00 44.05 4.79
77 78 0.963856 GGGTTTGAATCCCACGTCCC 60.964 60.000 6.45 0.00 44.05 4.46
78 79 1.303091 GGTTTGAATCCCACGTCCCG 61.303 60.000 0.00 0.00 0.00 5.14
79 80 1.673009 TTTGAATCCCACGTCCCGC 60.673 57.895 0.00 0.00 0.00 6.13
80 81 2.398840 TTTGAATCCCACGTCCCGCA 62.399 55.000 0.00 0.00 0.00 5.69
81 82 2.046700 GAATCCCACGTCCCGCAA 60.047 61.111 0.00 0.00 0.00 4.85
82 83 1.673009 GAATCCCACGTCCCGCAAA 60.673 57.895 0.00 0.00 0.00 3.68
83 84 1.001393 AATCCCACGTCCCGCAAAT 60.001 52.632 0.00 0.00 0.00 2.32
84 85 0.253610 AATCCCACGTCCCGCAAATA 59.746 50.000 0.00 0.00 0.00 1.40
85 86 0.472471 ATCCCACGTCCCGCAAATAT 59.528 50.000 0.00 0.00 0.00 1.28
86 87 0.253610 TCCCACGTCCCGCAAATATT 59.746 50.000 0.00 0.00 0.00 1.28
87 88 1.099689 CCCACGTCCCGCAAATATTT 58.900 50.000 0.00 0.00 0.00 1.40
88 89 1.474879 CCCACGTCCCGCAAATATTTT 59.525 47.619 0.00 0.00 0.00 1.82
89 90 2.094442 CCCACGTCCCGCAAATATTTTT 60.094 45.455 0.00 0.00 0.00 1.94
90 91 3.175929 CCACGTCCCGCAAATATTTTTC 58.824 45.455 0.00 0.00 0.00 2.29
91 92 3.119637 CCACGTCCCGCAAATATTTTTCT 60.120 43.478 0.00 0.00 0.00 2.52
92 93 3.851403 CACGTCCCGCAAATATTTTTCTG 59.149 43.478 0.00 0.00 0.00 3.02
93 94 2.851824 CGTCCCGCAAATATTTTTCTGC 59.148 45.455 0.00 0.00 0.00 4.26
94 95 3.186909 GTCCCGCAAATATTTTTCTGCC 58.813 45.455 0.00 0.00 0.00 4.85
95 96 2.828520 TCCCGCAAATATTTTTCTGCCA 59.171 40.909 0.00 0.00 0.00 4.92
96 97 2.929398 CCCGCAAATATTTTTCTGCCAC 59.071 45.455 0.00 0.00 0.00 5.01
97 98 2.598192 CCGCAAATATTTTTCTGCCACG 59.402 45.455 0.00 0.00 0.00 4.94
98 99 3.497118 CGCAAATATTTTTCTGCCACGA 58.503 40.909 0.00 0.00 0.00 4.35
99 100 4.104776 CGCAAATATTTTTCTGCCACGAT 58.895 39.130 0.00 0.00 0.00 3.73
100 101 4.204978 CGCAAATATTTTTCTGCCACGATC 59.795 41.667 0.00 0.00 0.00 3.69
101 102 5.101628 GCAAATATTTTTCTGCCACGATCA 58.898 37.500 0.00 0.00 0.00 2.92
102 103 5.750067 GCAAATATTTTTCTGCCACGATCAT 59.250 36.000 0.00 0.00 0.00 2.45
103 104 6.917477 GCAAATATTTTTCTGCCACGATCATA 59.083 34.615 0.00 0.00 0.00 2.15
104 105 7.596248 GCAAATATTTTTCTGCCACGATCATAT 59.404 33.333 0.00 0.00 0.00 1.78
105 106 9.467258 CAAATATTTTTCTGCCACGATCATATT 57.533 29.630 0.00 0.00 0.00 1.28
109 110 7.857734 TTTTTCTGCCACGATCATATTTAGA 57.142 32.000 0.00 0.00 0.00 2.10
110 111 7.482654 TTTTCTGCCACGATCATATTTAGAG 57.517 36.000 0.00 0.00 0.00 2.43
111 112 5.139435 TCTGCCACGATCATATTTAGAGG 57.861 43.478 0.00 0.00 0.00 3.69
112 113 4.832823 TCTGCCACGATCATATTTAGAGGA 59.167 41.667 0.00 0.00 0.00 3.71
113 114 5.047731 TCTGCCACGATCATATTTAGAGGAG 60.048 44.000 0.00 0.00 0.00 3.69
114 115 4.021104 TGCCACGATCATATTTAGAGGAGG 60.021 45.833 0.00 0.00 0.00 4.30
115 116 4.499183 CCACGATCATATTTAGAGGAGGC 58.501 47.826 0.00 0.00 0.00 4.70
116 117 4.221703 CCACGATCATATTTAGAGGAGGCT 59.778 45.833 0.00 0.00 0.00 4.58
117 118 5.167121 CACGATCATATTTAGAGGAGGCTG 58.833 45.833 0.00 0.00 0.00 4.85
118 119 4.835615 ACGATCATATTTAGAGGAGGCTGT 59.164 41.667 0.00 0.00 0.00 4.40
119 120 5.305644 ACGATCATATTTAGAGGAGGCTGTT 59.694 40.000 0.00 0.00 0.00 3.16
120 121 6.183361 ACGATCATATTTAGAGGAGGCTGTTT 60.183 38.462 0.00 0.00 0.00 2.83
121 122 6.146837 CGATCATATTTAGAGGAGGCTGTTTG 59.853 42.308 0.00 0.00 0.00 2.93
122 123 5.684704 TCATATTTAGAGGAGGCTGTTTGG 58.315 41.667 0.00 0.00 0.00 3.28
123 124 2.200373 TTTAGAGGAGGCTGTTTGGC 57.800 50.000 0.00 0.00 42.15 4.52
133 134 3.918253 CTGTTTGGCCAGCCCGCTA 62.918 63.158 5.11 0.00 35.87 4.26
134 135 3.134127 GTTTGGCCAGCCCGCTAG 61.134 66.667 5.11 0.00 35.87 3.42
135 136 4.424711 TTTGGCCAGCCCGCTAGG 62.425 66.667 5.11 0.00 35.87 3.02
148 149 4.554363 CTAGGCGACCCGTGCGAG 62.554 72.222 0.00 0.00 35.76 5.03
176 177 2.802414 GCAAAGCGGCGCAGAAAG 60.802 61.111 35.02 18.82 0.00 2.62
177 178 2.802414 CAAAGCGGCGCAGAAAGC 60.802 61.111 35.02 7.34 40.87 3.51
187 188 1.643832 GCAGAAAGCGCCGAATAGG 59.356 57.895 2.29 0.00 44.97 2.57
188 189 0.810031 GCAGAAAGCGCCGAATAGGA 60.810 55.000 2.29 0.00 45.00 2.94
189 190 0.931005 CAGAAAGCGCCGAATAGGAC 59.069 55.000 2.29 0.00 45.00 3.85
190 191 0.179081 AGAAAGCGCCGAATAGGACC 60.179 55.000 2.29 0.00 45.00 4.46
191 192 0.179081 GAAAGCGCCGAATAGGACCT 60.179 55.000 2.29 0.00 45.00 3.85
192 193 0.179081 AAAGCGCCGAATAGGACCTC 60.179 55.000 2.29 0.00 45.00 3.85
193 194 2.029221 GCGCCGAATAGGACCTCC 59.971 66.667 0.00 0.00 45.00 4.30
194 195 2.735237 CGCCGAATAGGACCTCCC 59.265 66.667 0.00 0.00 45.00 4.30
195 196 2.868986 CGCCGAATAGGACCTCCCC 61.869 68.421 0.00 0.00 45.00 4.81
196 197 2.868986 GCCGAATAGGACCTCCCCG 61.869 68.421 0.00 0.00 45.00 5.73
197 198 2.735237 CGAATAGGACCTCCCCGC 59.265 66.667 0.00 0.00 36.42 6.13
198 199 2.735237 GAATAGGACCTCCCCGCG 59.265 66.667 0.00 0.00 36.42 6.46
199 200 2.842936 AATAGGACCTCCCCGCGG 60.843 66.667 21.04 21.04 36.42 6.46
291 293 5.591877 AGATCTGGCTTTGAATGACAATACC 59.408 40.000 0.00 0.00 38.36 2.73
297 299 1.745232 TGAATGACAATACCGGTGCC 58.255 50.000 19.93 1.84 0.00 5.01
316 318 2.753043 GGACGACCGGACAGCCTA 60.753 66.667 9.46 0.00 0.00 3.93
317 319 2.125961 GGACGACCGGACAGCCTAT 61.126 63.158 9.46 0.00 0.00 2.57
318 320 1.065928 GACGACCGGACAGCCTATG 59.934 63.158 9.46 0.00 0.00 2.23
320 322 2.109181 GACCGGACAGCCTATGCC 59.891 66.667 9.46 0.00 38.69 4.40
321 323 2.365635 ACCGGACAGCCTATGCCT 60.366 61.111 9.46 0.00 38.69 4.75
322 324 2.370647 GACCGGACAGCCTATGCCTC 62.371 65.000 9.46 0.00 38.69 4.70
323 325 2.434843 CCGGACAGCCTATGCCTCA 61.435 63.158 0.00 0.00 38.69 3.86
324 326 1.522092 CGGACAGCCTATGCCTCAA 59.478 57.895 0.00 0.00 38.69 3.02
326 328 1.678728 CGGACAGCCTATGCCTCAAAA 60.679 52.381 0.00 0.00 38.69 2.44
327 329 2.019984 GGACAGCCTATGCCTCAAAAG 58.980 52.381 0.00 0.00 38.69 2.27
328 330 2.356125 GGACAGCCTATGCCTCAAAAGA 60.356 50.000 0.00 0.00 38.69 2.52
329 331 2.941720 GACAGCCTATGCCTCAAAAGAG 59.058 50.000 0.00 0.00 38.69 2.85
330 332 2.295885 CAGCCTATGCCTCAAAAGAGG 58.704 52.381 7.16 7.16 44.98 3.69
338 340 2.725221 CCTCAAAAGAGGCCTGCTAT 57.275 50.000 12.00 0.00 35.31 2.97
339 341 3.845781 CCTCAAAAGAGGCCTGCTATA 57.154 47.619 12.00 0.00 35.31 1.31
340 342 3.471680 CCTCAAAAGAGGCCTGCTATAC 58.528 50.000 12.00 0.00 35.31 1.47
341 343 3.118261 CCTCAAAAGAGGCCTGCTATACA 60.118 47.826 12.00 0.00 35.31 2.29
342 344 3.873910 TCAAAAGAGGCCTGCTATACAC 58.126 45.455 12.00 0.00 0.00 2.90
343 345 3.263170 TCAAAAGAGGCCTGCTATACACA 59.737 43.478 12.00 0.00 0.00 3.72
344 346 2.990066 AAGAGGCCTGCTATACACAC 57.010 50.000 12.00 0.00 0.00 3.82
345 347 0.747255 AGAGGCCTGCTATACACACG 59.253 55.000 12.00 0.00 0.00 4.49
346 348 0.744874 GAGGCCTGCTATACACACGA 59.255 55.000 12.00 0.00 0.00 4.35
347 349 0.460311 AGGCCTGCTATACACACGAC 59.540 55.000 3.11 0.00 0.00 4.34
348 350 0.870307 GGCCTGCTATACACACGACG 60.870 60.000 0.00 0.00 0.00 5.12
349 351 0.099968 GCCTGCTATACACACGACGA 59.900 55.000 0.00 0.00 0.00 4.20
350 352 1.269102 GCCTGCTATACACACGACGAT 60.269 52.381 0.00 0.00 0.00 3.73
351 353 2.031420 GCCTGCTATACACACGACGATA 60.031 50.000 0.00 0.00 0.00 2.92
352 354 3.366070 GCCTGCTATACACACGACGATAT 60.366 47.826 0.00 0.00 0.00 1.63
353 355 4.404324 CCTGCTATACACACGACGATATC 58.596 47.826 0.00 0.00 0.00 1.63
354 356 4.404324 CTGCTATACACACGACGATATCC 58.596 47.826 0.00 0.00 0.00 2.59
355 357 3.816523 TGCTATACACACGACGATATCCA 59.183 43.478 0.00 0.00 0.00 3.41
356 358 4.083484 TGCTATACACACGACGATATCCAG 60.083 45.833 0.00 0.00 0.00 3.86
359 361 0.028902 CACACGACGATATCCAGCGA 59.971 55.000 0.00 0.00 36.93 4.93
362 364 2.223735 ACACGACGATATCCAGCGATTT 60.224 45.455 0.00 0.00 36.93 2.17
363 365 3.004002 ACACGACGATATCCAGCGATTTA 59.996 43.478 0.00 0.00 36.93 1.40
365 367 4.443063 CACGACGATATCCAGCGATTTAAA 59.557 41.667 0.00 0.00 36.93 1.52
367 369 4.915667 CGACGATATCCAGCGATTTAAAGA 59.084 41.667 0.00 0.00 36.93 2.52
368 370 5.164177 CGACGATATCCAGCGATTTAAAGAC 60.164 44.000 0.00 0.00 36.93 3.01
369 371 4.680110 ACGATATCCAGCGATTTAAAGACG 59.320 41.667 11.49 11.49 36.93 4.18
370 372 4.915667 CGATATCCAGCGATTTAAAGACGA 59.084 41.667 17.53 1.99 34.91 4.20
372 374 6.453003 CGATATCCAGCGATTTAAAGACGATG 60.453 42.308 20.74 20.74 41.84 3.84
373 375 2.607635 TCCAGCGATTTAAAGACGATGC 59.392 45.455 21.66 8.41 41.06 3.91
374 376 2.351418 CCAGCGATTTAAAGACGATGCA 59.649 45.455 21.66 0.00 41.06 3.96
375 377 3.345714 CAGCGATTTAAAGACGATGCAC 58.654 45.455 17.70 4.43 36.72 4.57
376 378 3.000041 AGCGATTTAAAGACGATGCACA 59.000 40.909 17.53 0.00 0.00 4.57
377 379 3.435327 AGCGATTTAAAGACGATGCACAA 59.565 39.130 17.53 0.00 0.00 3.33
378 380 3.780801 GCGATTTAAAGACGATGCACAAG 59.219 43.478 17.53 0.00 0.00 3.16
379 381 4.435518 GCGATTTAAAGACGATGCACAAGA 60.436 41.667 17.53 0.00 0.00 3.02
380 382 5.727791 GCGATTTAAAGACGATGCACAAGAT 60.728 40.000 17.53 0.00 0.00 2.40
384 386 2.749280 AGACGATGCACAAGATCACA 57.251 45.000 0.00 0.00 0.00 3.58
385 387 3.257469 AGACGATGCACAAGATCACAT 57.743 42.857 0.00 0.00 0.00 3.21
386 388 2.934553 AGACGATGCACAAGATCACATG 59.065 45.455 0.00 0.00 0.00 3.21
387 389 1.399440 ACGATGCACAAGATCACATGC 59.601 47.619 7.85 7.85 38.59 4.06
388 390 1.268386 CGATGCACAAGATCACATGCC 60.268 52.381 11.25 0.00 37.26 4.40
389 391 1.066605 GATGCACAAGATCACATGCCC 59.933 52.381 11.25 2.26 37.26 5.36
390 392 0.251253 TGCACAAGATCACATGCCCA 60.251 50.000 11.25 0.00 37.26 5.36
392 394 0.454600 CACAAGATCACATGCCCAGC 59.545 55.000 0.00 0.00 0.00 4.85
393 395 0.038599 ACAAGATCACATGCCCAGCA 59.961 50.000 0.00 0.00 44.86 4.41
394 396 0.738975 CAAGATCACATGCCCAGCAG 59.261 55.000 0.00 0.00 43.65 4.24
395 397 1.035932 AAGATCACATGCCCAGCAGC 61.036 55.000 0.00 0.00 43.65 5.25
402 404 4.340246 TGCCCAGCAGCAGGACAG 62.340 66.667 5.14 0.00 38.00 3.51
416 418 3.625745 GACAGGTCCACCGTTGAAT 57.374 52.632 0.00 0.00 42.08 2.57
417 419 2.754946 GACAGGTCCACCGTTGAATA 57.245 50.000 0.00 0.00 42.08 1.75
418 420 2.344025 GACAGGTCCACCGTTGAATAC 58.656 52.381 0.00 0.00 42.08 1.89
419 421 1.695242 ACAGGTCCACCGTTGAATACA 59.305 47.619 0.00 0.00 42.08 2.29
422 424 2.073816 GGTCCACCGTTGAATACAGTG 58.926 52.381 0.00 0.00 0.00 3.66
423 425 2.549349 GGTCCACCGTTGAATACAGTGT 60.549 50.000 0.00 0.00 0.00 3.55
424 426 2.735134 GTCCACCGTTGAATACAGTGTC 59.265 50.000 0.00 0.00 0.00 3.67
425 427 1.724623 CCACCGTTGAATACAGTGTCG 59.275 52.381 0.00 0.00 0.00 4.35
426 428 1.724623 CACCGTTGAATACAGTGTCGG 59.275 52.381 15.13 15.13 41.77 4.79
427 429 0.719465 CCGTTGAATACAGTGTCGGC 59.281 55.000 0.00 0.00 0.00 5.54
429 431 1.390123 CGTTGAATACAGTGTCGGCTG 59.610 52.381 0.00 0.00 41.92 4.85
430 432 1.732259 GTTGAATACAGTGTCGGCTGG 59.268 52.381 0.00 0.00 40.59 4.85
431 433 1.262417 TGAATACAGTGTCGGCTGGA 58.738 50.000 0.00 0.00 40.59 3.86
432 434 1.831106 TGAATACAGTGTCGGCTGGAT 59.169 47.619 0.00 0.00 41.53 3.41
437 439 2.261671 GTGTCGGCTGGATGTCGT 59.738 61.111 0.00 0.00 45.15 4.34
438 440 2.094659 GTGTCGGCTGGATGTCGTG 61.095 63.158 0.00 0.00 45.15 4.35
440 442 1.245376 TGTCGGCTGGATGTCGTGTA 61.245 55.000 0.00 0.00 45.15 2.90
441 443 0.102481 GTCGGCTGGATGTCGTGTAT 59.898 55.000 0.00 0.00 45.15 2.29
442 444 0.102300 TCGGCTGGATGTCGTGTATG 59.898 55.000 0.00 0.00 45.15 2.39
444 446 0.461870 GGCTGGATGTCGTGTATGCA 60.462 55.000 0.00 0.00 0.00 3.96
445 447 0.933097 GCTGGATGTCGTGTATGCAG 59.067 55.000 11.25 11.25 44.03 4.41
446 448 1.740380 GCTGGATGTCGTGTATGCAGT 60.740 52.381 14.86 0.00 43.38 4.40
447 449 1.929169 CTGGATGTCGTGTATGCAGTG 59.071 52.381 0.00 0.00 38.64 3.66
450 452 1.583856 GATGTCGTGTATGCAGTGTCG 59.416 52.381 0.00 0.00 0.00 4.35
453 455 0.879090 TCGTGTATGCAGTGTCGTCT 59.121 50.000 0.00 0.00 0.00 4.18
454 456 2.078392 TCGTGTATGCAGTGTCGTCTA 58.922 47.619 0.00 0.00 0.00 2.59
455 457 2.159612 TCGTGTATGCAGTGTCGTCTAC 60.160 50.000 0.00 0.00 0.00 2.59
456 458 2.413634 CGTGTATGCAGTGTCGTCTACA 60.414 50.000 0.00 0.00 35.06 2.74
457 459 3.172050 GTGTATGCAGTGTCGTCTACAG 58.828 50.000 0.00 0.00 39.29 2.74
459 461 2.929531 ATGCAGTGTCGTCTACAGAG 57.070 50.000 0.00 0.00 39.29 3.35
460 462 0.241213 TGCAGTGTCGTCTACAGAGC 59.759 55.000 0.00 0.00 39.29 4.09
461 463 0.241213 GCAGTGTCGTCTACAGAGCA 59.759 55.000 0.00 0.00 39.29 4.26
462 464 1.730772 GCAGTGTCGTCTACAGAGCAG 60.731 57.143 0.00 0.00 39.29 4.24
463 465 1.537638 CAGTGTCGTCTACAGAGCAGT 59.462 52.381 0.00 0.00 39.29 4.40
464 466 2.030717 CAGTGTCGTCTACAGAGCAGTT 60.031 50.000 0.00 0.00 39.29 3.16
465 467 2.623889 AGTGTCGTCTACAGAGCAGTTT 59.376 45.455 0.00 0.00 39.29 2.66
466 468 2.981140 GTGTCGTCTACAGAGCAGTTTC 59.019 50.000 0.00 0.00 39.29 2.78
467 469 2.243407 GTCGTCTACAGAGCAGTTTCG 58.757 52.381 0.00 0.00 0.00 3.46
468 470 1.199327 TCGTCTACAGAGCAGTTTCGG 59.801 52.381 0.00 0.00 0.00 4.30
469 471 1.351153 GTCTACAGAGCAGTTTCGGC 58.649 55.000 0.00 0.00 0.00 5.54
471 473 0.247736 CTACAGAGCAGTTTCGGCCT 59.752 55.000 0.00 0.00 0.00 5.19
473 475 1.004560 CAGAGCAGTTTCGGCCTCA 60.005 57.895 0.00 0.00 0.00 3.86
474 476 0.603707 CAGAGCAGTTTCGGCCTCAA 60.604 55.000 0.00 0.00 0.00 3.02
475 477 0.108585 AGAGCAGTTTCGGCCTCAAA 59.891 50.000 0.00 0.00 0.00 2.69
476 478 0.951558 GAGCAGTTTCGGCCTCAAAA 59.048 50.000 0.00 0.00 0.00 2.44
479 481 1.753956 CAGTTTCGGCCTCAAAAACG 58.246 50.000 0.00 0.39 37.82 3.60
481 483 0.937699 GTTTCGGCCTCAAAAACGCC 60.938 55.000 0.00 0.00 39.41 5.68
482 484 1.104577 TTTCGGCCTCAAAAACGCCT 61.105 50.000 0.00 0.00 40.70 5.52
483 485 0.250381 TTCGGCCTCAAAAACGCCTA 60.250 50.000 0.00 0.00 40.70 3.93
484 486 0.250381 TCGGCCTCAAAAACGCCTAA 60.250 50.000 0.00 0.00 40.70 2.69
487 489 2.672714 GGCCTCAAAAACGCCTAAAAG 58.327 47.619 0.00 0.00 39.70 2.27
492 494 5.292345 GCCTCAAAAACGCCTAAAAGAAAAA 59.708 36.000 0.00 0.00 0.00 1.94
511 3370 5.530176 AAAAATAGAGCCTACCCCTCAAA 57.470 39.130 0.00 0.00 0.00 2.69
513 3372 5.530176 AAATAGAGCCTACCCCTCAAAAA 57.470 39.130 0.00 0.00 0.00 1.94
514 3373 4.779993 ATAGAGCCTACCCCTCAAAAAG 57.220 45.455 0.00 0.00 0.00 2.27
516 3375 2.986728 AGAGCCTACCCCTCAAAAAGAA 59.013 45.455 0.00 0.00 0.00 2.52
517 3376 3.397955 AGAGCCTACCCCTCAAAAAGAAA 59.602 43.478 0.00 0.00 0.00 2.52
541 3419 4.436998 GGACGACCGGACAGCCTG 62.437 72.222 9.46 0.00 0.00 4.85
584 3462 1.810532 CACGTAGAGTGGAGCCTCC 59.189 63.158 2.98 2.98 46.77 4.30
658 3545 3.036084 CACTTCGGCGTCGCTTGT 61.036 61.111 18.11 8.01 36.13 3.16
665 3552 0.719465 CGGCGTCGCTTGTAATTTCT 59.281 50.000 18.11 0.00 0.00 2.52
678 3565 6.403092 GCTTGTAATTTCTTGGAGAAGAGCTC 60.403 42.308 5.27 5.27 39.44 4.09
763 3853 0.108804 ACGAATCACTGCCTACCACG 60.109 55.000 0.00 0.00 0.00 4.94
1031 4136 3.997021 CTGTGTTGTTGGAACCTAGCTAG 59.003 47.826 14.20 14.20 0.00 3.42
1037 4142 4.680407 TGTTGGAACCTAGCTAGGAGTAA 58.320 43.478 40.40 25.85 46.63 2.24
1038 4143 4.710375 TGTTGGAACCTAGCTAGGAGTAAG 59.290 45.833 40.40 17.38 46.63 2.34
1058 4164 9.517609 GAGTAAGTAGTATATCACAAGTGTTGG 57.482 37.037 0.00 0.00 34.12 3.77
1064 4170 7.553881 AGTATATCACAAGTGTTGGCAATAC 57.446 36.000 18.13 18.13 34.12 1.89
1067 4174 9.273016 GTATATCACAAGTGTTGGCAATACTAT 57.727 33.333 26.65 18.94 32.16 2.12
1079 4186 4.101585 TGGCAATACTATTCTACAGCTGCT 59.898 41.667 15.27 0.00 0.00 4.24
1110 4217 2.124151 AATGCTGTGCCCGGATCC 60.124 61.111 0.73 0.00 0.00 3.36
1111 4218 4.552365 ATGCTGTGCCCGGATCCG 62.552 66.667 27.65 27.65 39.44 4.18
1123 4230 2.519377 CGGATCCGGCTTATGTACAA 57.481 50.000 26.95 0.00 35.56 2.41
1124 4231 2.132762 CGGATCCGGCTTATGTACAAC 58.867 52.381 26.95 0.00 35.56 3.32
1125 4232 2.223971 CGGATCCGGCTTATGTACAACT 60.224 50.000 26.95 0.00 35.56 3.16
1126 4233 3.740141 CGGATCCGGCTTATGTACAACTT 60.740 47.826 26.95 0.00 35.56 2.66
1127 4234 4.196971 GGATCCGGCTTATGTACAACTTT 58.803 43.478 0.00 0.00 0.00 2.66
1128 4235 4.035208 GGATCCGGCTTATGTACAACTTTG 59.965 45.833 0.00 0.00 0.00 2.77
1129 4236 4.010667 TCCGGCTTATGTACAACTTTGT 57.989 40.909 0.00 0.00 44.86 2.83
1186 4297 3.565482 AGATTGGCTTAGTTGTGTGTGTG 59.435 43.478 0.00 0.00 0.00 3.82
1187 4298 2.411628 TGGCTTAGTTGTGTGTGTGT 57.588 45.000 0.00 0.00 0.00 3.72
1228 4343 2.169352 CCAGATAGTACTGTGCCAGCTT 59.831 50.000 5.39 0.00 36.30 3.74
1287 4403 2.367567 TGCCGAGGAGACAAACTAAAGT 59.632 45.455 0.00 0.00 0.00 2.66
1291 4407 5.560375 GCCGAGGAGACAAACTAAAGTTTTC 60.560 44.000 5.36 7.30 45.07 2.29
1417 4536 9.530633 GTTAATGTTACTAATAGTGGTGAGGAG 57.469 37.037 2.68 0.00 0.00 3.69
1418 4537 6.732896 ATGTTACTAATAGTGGTGAGGAGG 57.267 41.667 2.68 0.00 0.00 4.30
1419 4538 4.960469 TGTTACTAATAGTGGTGAGGAGGG 59.040 45.833 2.68 0.00 0.00 4.30
1420 4539 2.399580 ACTAATAGTGGTGAGGAGGGC 58.600 52.381 0.00 0.00 0.00 5.19
1421 4540 2.292918 ACTAATAGTGGTGAGGAGGGCA 60.293 50.000 0.00 0.00 0.00 5.36
1422 4541 1.207791 AATAGTGGTGAGGAGGGCAG 58.792 55.000 0.00 0.00 0.00 4.85
1423 4542 0.339859 ATAGTGGTGAGGAGGGCAGA 59.660 55.000 0.00 0.00 0.00 4.26
1424 4543 0.339859 TAGTGGTGAGGAGGGCAGAT 59.660 55.000 0.00 0.00 0.00 2.90
1425 4544 0.339859 AGTGGTGAGGAGGGCAGATA 59.660 55.000 0.00 0.00 0.00 1.98
1426 4545 1.061812 AGTGGTGAGGAGGGCAGATAT 60.062 52.381 0.00 0.00 0.00 1.63
1427 4546 1.771255 GTGGTGAGGAGGGCAGATATT 59.229 52.381 0.00 0.00 0.00 1.28
1428 4547 2.972713 GTGGTGAGGAGGGCAGATATTA 59.027 50.000 0.00 0.00 0.00 0.98
1474 4593 0.804989 GAAACATGGGTTCCTCGCAG 59.195 55.000 0.00 0.00 42.07 5.18
1492 4611 3.489738 CGCAGGAATCCACATTTTCATCC 60.490 47.826 0.61 0.00 0.00 3.51
1513 4632 1.571460 CTCAACTGCCGCACAAGTC 59.429 57.895 0.00 0.00 0.00 3.01
1651 4770 4.851639 ATGGACTGCTTAATCCTTCAGT 57.148 40.909 0.00 0.00 41.90 3.41
1652 4771 4.640771 TGGACTGCTTAATCCTTCAGTT 57.359 40.909 0.00 0.00 39.60 3.16
1653 4772 4.579869 TGGACTGCTTAATCCTTCAGTTC 58.420 43.478 0.00 0.00 39.60 3.01
1654 4773 3.942115 GGACTGCTTAATCCTTCAGTTCC 59.058 47.826 0.00 0.00 39.60 3.62
1655 4774 4.565652 GGACTGCTTAATCCTTCAGTTCCA 60.566 45.833 0.00 0.00 39.60 3.53
1656 4775 4.583871 ACTGCTTAATCCTTCAGTTCCAG 58.416 43.478 0.00 0.00 36.48 3.86
1704 4830 8.504005 CATGGGTATTTAGCTCCTTTATTAACG 58.496 37.037 0.00 0.00 0.00 3.18
1720 4846 9.367444 CTTTATTAACGTAGGAGAACATGTCTT 57.633 33.333 0.00 0.00 36.41 3.01
1743 4869 6.732896 TCTGTTCCTTTCTAGACAAGAACT 57.267 37.500 17.22 0.00 44.02 3.01
1804 4930 0.811616 GCTGTGGCAATACGAGGGAG 60.812 60.000 0.00 0.00 38.54 4.30
1856 5049 3.813724 AGAAAACGCCTTAAACTCTGACC 59.186 43.478 0.00 0.00 0.00 4.02
1881 5074 6.577055 CGTTGAATTCAGCGTCTTGATTTTTA 59.423 34.615 29.60 0.00 43.88 1.52
2093 5287 3.889134 CTCAGCTGCTGGCGGAACA 62.889 63.158 27.79 7.26 43.85 3.18
2173 5367 4.030216 TGTACTACCCTGCTGATCATTGA 58.970 43.478 0.00 0.00 0.00 2.57
2240 5438 6.820656 AGTGCTATTGGACTAACTTCTTGATG 59.179 38.462 0.00 0.00 43.13 3.07
2420 5618 3.645434 TGTACCGTGGGATAGGTATGTT 58.355 45.455 0.00 0.00 43.91 2.71
2486 5684 3.717707 TCGGTATCACTTCAGCTAATGC 58.282 45.455 0.00 0.00 40.05 3.56
2536 5734 7.992008 TGTAACAAGGGTGCTATAAATAAAGC 58.008 34.615 0.00 0.00 39.25 3.51
2711 5909 9.807649 GCTAACACATGAATATCCTGAAAAATT 57.192 29.630 0.00 0.00 0.00 1.82
2764 5964 5.813080 ACCTTGCGGTATTTGAAACTATC 57.187 39.130 0.00 0.00 43.29 2.08
2827 6027 7.559590 AGATGTTATGTAAAACTCATCTGGC 57.440 36.000 0.00 0.00 39.90 4.85
3385 6585 2.017049 GATCCATTTCAGGTTGTCCCG 58.983 52.381 0.00 0.00 38.74 5.14
3460 6660 1.347817 CTCCACGCGAGAAAGCTCAC 61.348 60.000 15.93 0.00 41.63 3.51
3800 7034 2.337359 AGGTGAACCCTGGCTAAGTA 57.663 50.000 0.00 0.00 44.08 2.24
3874 7108 3.438087 CGCAAAGATCACATGAAGACCTT 59.562 43.478 0.00 0.00 0.00 3.50
3875 7109 4.670992 CGCAAAGATCACATGAAGACCTTG 60.671 45.833 0.00 3.50 0.00 3.61
3915 7158 9.160496 GATCACATGAAGATCTTTGTCTACTTT 57.840 33.333 9.87 0.00 39.01 2.66
4046 7294 4.156739 GGGAAATTACACTGAAGCCTTGAG 59.843 45.833 0.00 0.00 0.00 3.02
4181 7433 8.824783 AGGACAATCCCAAAATGAAATAAATCA 58.175 29.630 0.00 0.00 37.19 2.57
4197 7449 9.900264 GAAATAAATCACAAAAGAACACACAAC 57.100 29.630 0.00 0.00 0.00 3.32
4256 7508 7.013559 CCATATGCAGACCATTCAGTTTTGATA 59.986 37.037 0.00 0.00 35.34 2.15
4658 7913 9.661563 TCCAAATCGTCAAAACATTACTAGTAT 57.338 29.630 2.79 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.958822 GTAACAAACCCCTGCACCAG 59.041 55.000 0.00 0.00 0.00 4.00
7 8 0.820074 CGTAACAAACCCCTGCACCA 60.820 55.000 0.00 0.00 0.00 4.17
8 9 1.953772 CGTAACAAACCCCTGCACC 59.046 57.895 0.00 0.00 0.00 5.01
9 10 1.284715 GCGTAACAAACCCCTGCAC 59.715 57.895 0.00 0.00 0.00 4.57
10 11 1.899534 GGCGTAACAAACCCCTGCA 60.900 57.895 0.00 0.00 0.00 4.41
11 12 2.959372 GGCGTAACAAACCCCTGC 59.041 61.111 0.00 0.00 0.00 4.85
12 13 2.973316 GCGGCGTAACAAACCCCTG 61.973 63.158 9.37 0.00 0.00 4.45
13 14 2.670592 GCGGCGTAACAAACCCCT 60.671 61.111 9.37 0.00 0.00 4.79
14 15 2.191354 GAAGCGGCGTAACAAACCCC 62.191 60.000 9.37 0.00 0.00 4.95
15 16 1.208358 GAAGCGGCGTAACAAACCC 59.792 57.895 9.37 0.00 0.00 4.11
16 17 0.589708 AAGAAGCGGCGTAACAAACC 59.410 50.000 9.37 0.00 0.00 3.27
17 18 2.304413 GAAAGAAGCGGCGTAACAAAC 58.696 47.619 9.37 0.00 0.00 2.93
18 19 1.070443 CGAAAGAAGCGGCGTAACAAA 60.070 47.619 9.37 0.00 0.00 2.83
19 20 0.509499 CGAAAGAAGCGGCGTAACAA 59.491 50.000 9.37 0.00 0.00 2.83
20 21 1.286354 CCGAAAGAAGCGGCGTAACA 61.286 55.000 9.37 0.00 42.55 2.41
21 22 1.418755 CCGAAAGAAGCGGCGTAAC 59.581 57.895 9.37 0.00 42.55 2.50
22 23 3.864944 CCGAAAGAAGCGGCGTAA 58.135 55.556 9.37 0.00 42.55 3.18
28 29 1.735198 TACACGGCCGAAAGAAGCG 60.735 57.895 35.90 11.25 0.00 4.68
29 30 1.785951 GTACACGGCCGAAAGAAGC 59.214 57.895 35.90 10.96 0.00 3.86
30 31 0.665369 ACGTACACGGCCGAAAGAAG 60.665 55.000 35.90 19.73 44.95 2.85
31 32 0.249405 AACGTACACGGCCGAAAGAA 60.249 50.000 35.90 9.37 44.95 2.52
32 33 0.664166 GAACGTACACGGCCGAAAGA 60.664 55.000 35.90 11.21 44.95 2.52
33 34 1.777199 GAACGTACACGGCCGAAAG 59.223 57.895 35.90 22.89 44.95 2.62
34 35 2.015627 CGAACGTACACGGCCGAAA 61.016 57.895 35.90 13.90 44.95 3.46
35 36 2.428902 CGAACGTACACGGCCGAA 60.429 61.111 35.90 14.32 44.95 4.30
41 42 4.443263 CACGCGCGAACGTACACG 62.443 66.667 39.36 3.06 46.34 4.49
42 43 4.112256 CCACGCGCGAACGTACAC 62.112 66.667 39.36 0.00 46.34 2.90
45 46 4.644230 AACCCACGCGCGAACGTA 62.644 61.111 39.36 0.00 46.34 3.57
48 49 2.452366 ATTCAAACCCACGCGCGAAC 62.452 55.000 39.36 0.00 0.00 3.95
49 50 2.177654 GATTCAAACCCACGCGCGAA 62.178 55.000 39.36 18.25 0.00 4.70
50 51 2.666862 ATTCAAACCCACGCGCGA 60.667 55.556 39.36 11.28 0.00 5.87
51 52 2.202298 GATTCAAACCCACGCGCG 60.202 61.111 30.96 30.96 0.00 6.86
52 53 2.178273 GGATTCAAACCCACGCGC 59.822 61.111 5.73 0.00 0.00 6.86
53 54 2.874751 GGGATTCAAACCCACGCG 59.125 61.111 3.53 3.53 46.05 6.01
58 59 0.963856 GGGACGTGGGATTCAAACCC 60.964 60.000 0.00 0.00 46.87 4.11
59 60 2.563297 GGGACGTGGGATTCAAACC 58.437 57.895 0.00 0.00 0.00 3.27
73 74 3.186909 GGCAGAAAAATATTTGCGGGAC 58.813 45.455 0.39 0.00 0.00 4.46
74 75 2.828520 TGGCAGAAAAATATTTGCGGGA 59.171 40.909 0.39 0.00 0.00 5.14
75 76 2.929398 GTGGCAGAAAAATATTTGCGGG 59.071 45.455 0.39 0.00 0.00 6.13
76 77 2.598192 CGTGGCAGAAAAATATTTGCGG 59.402 45.455 0.39 0.00 0.00 5.69
77 78 3.497118 TCGTGGCAGAAAAATATTTGCG 58.503 40.909 0.39 0.00 0.00 4.85
78 79 5.101628 TGATCGTGGCAGAAAAATATTTGC 58.898 37.500 0.39 1.24 0.00 3.68
79 80 9.467258 AATATGATCGTGGCAGAAAAATATTTG 57.533 29.630 0.39 0.00 0.00 2.32
83 84 9.554395 TCTAAATATGATCGTGGCAGAAAAATA 57.446 29.630 0.00 0.00 0.00 1.40
84 85 8.450578 TCTAAATATGATCGTGGCAGAAAAAT 57.549 30.769 0.00 0.00 0.00 1.82
85 86 7.012327 CCTCTAAATATGATCGTGGCAGAAAAA 59.988 37.037 0.00 0.00 0.00 1.94
86 87 6.483307 CCTCTAAATATGATCGTGGCAGAAAA 59.517 38.462 0.00 0.00 0.00 2.29
87 88 5.991606 CCTCTAAATATGATCGTGGCAGAAA 59.008 40.000 0.00 0.00 0.00 2.52
88 89 5.304357 TCCTCTAAATATGATCGTGGCAGAA 59.696 40.000 0.00 0.00 0.00 3.02
89 90 4.832823 TCCTCTAAATATGATCGTGGCAGA 59.167 41.667 0.00 0.00 0.00 4.26
90 91 5.139435 TCCTCTAAATATGATCGTGGCAG 57.861 43.478 0.00 0.00 0.00 4.85
91 92 4.021104 CCTCCTCTAAATATGATCGTGGCA 60.021 45.833 0.00 0.00 0.00 4.92
92 93 4.499183 CCTCCTCTAAATATGATCGTGGC 58.501 47.826 0.00 0.00 0.00 5.01
93 94 4.221703 AGCCTCCTCTAAATATGATCGTGG 59.778 45.833 0.00 0.00 0.00 4.94
94 95 5.167121 CAGCCTCCTCTAAATATGATCGTG 58.833 45.833 0.00 0.00 0.00 4.35
95 96 4.835615 ACAGCCTCCTCTAAATATGATCGT 59.164 41.667 0.00 0.00 0.00 3.73
96 97 5.398603 ACAGCCTCCTCTAAATATGATCG 57.601 43.478 0.00 0.00 0.00 3.69
97 98 6.429385 CCAAACAGCCTCCTCTAAATATGATC 59.571 42.308 0.00 0.00 0.00 2.92
98 99 6.302269 CCAAACAGCCTCCTCTAAATATGAT 58.698 40.000 0.00 0.00 0.00 2.45
99 100 5.684704 CCAAACAGCCTCCTCTAAATATGA 58.315 41.667 0.00 0.00 0.00 2.15
100 101 4.276926 GCCAAACAGCCTCCTCTAAATATG 59.723 45.833 0.00 0.00 0.00 1.78
101 102 4.464947 GCCAAACAGCCTCCTCTAAATAT 58.535 43.478 0.00 0.00 0.00 1.28
102 103 3.886123 GCCAAACAGCCTCCTCTAAATA 58.114 45.455 0.00 0.00 0.00 1.40
103 104 2.728007 GCCAAACAGCCTCCTCTAAAT 58.272 47.619 0.00 0.00 0.00 1.40
104 105 2.200373 GCCAAACAGCCTCCTCTAAA 57.800 50.000 0.00 0.00 0.00 1.85
105 106 3.957288 GCCAAACAGCCTCCTCTAA 57.043 52.632 0.00 0.00 0.00 2.10
115 116 3.918253 TAGCGGGCTGGCCAAACAG 62.918 63.158 21.03 4.35 41.41 3.16
116 117 3.918253 CTAGCGGGCTGGCCAAACA 62.918 63.158 21.03 1.02 37.98 2.83
117 118 3.134127 CTAGCGGGCTGGCCAAAC 61.134 66.667 21.03 8.85 37.98 2.93
118 119 4.424711 CCTAGCGGGCTGGCCAAA 62.425 66.667 21.03 3.60 37.98 3.28
131 132 4.554363 CTCGCACGGGTCGCCTAG 62.554 72.222 0.00 0.00 0.00 3.02
159 160 2.802414 CTTTCTGCGCCGCTTTGC 60.802 61.111 11.67 0.00 0.00 3.68
160 161 2.802414 GCTTTCTGCGCCGCTTTG 60.802 61.111 11.67 0.34 0.00 2.77
169 170 0.810031 TCCTATTCGGCGCTTTCTGC 60.810 55.000 7.64 0.00 38.57 4.26
170 171 0.931005 GTCCTATTCGGCGCTTTCTG 59.069 55.000 7.64 0.00 0.00 3.02
171 172 0.179081 GGTCCTATTCGGCGCTTTCT 60.179 55.000 7.64 0.00 0.00 2.52
172 173 0.179081 AGGTCCTATTCGGCGCTTTC 60.179 55.000 7.64 0.00 0.00 2.62
173 174 0.179081 GAGGTCCTATTCGGCGCTTT 60.179 55.000 7.64 0.00 0.00 3.51
174 175 1.442148 GAGGTCCTATTCGGCGCTT 59.558 57.895 7.64 0.00 0.00 4.68
175 176 2.499827 GGAGGTCCTATTCGGCGCT 61.500 63.158 7.64 0.00 0.00 5.92
176 177 2.029221 GGAGGTCCTATTCGGCGC 59.971 66.667 0.00 0.00 0.00 6.53
177 178 2.735237 GGGAGGTCCTATTCGGCG 59.265 66.667 0.00 0.00 35.95 6.46
178 179 2.868986 CGGGGAGGTCCTATTCGGC 61.869 68.421 0.00 0.00 35.95 5.54
179 180 2.868986 GCGGGGAGGTCCTATTCGG 61.869 68.421 0.00 0.00 35.95 4.30
180 181 2.735237 GCGGGGAGGTCCTATTCG 59.265 66.667 0.00 0.00 35.95 3.34
181 182 2.735237 CGCGGGGAGGTCCTATTC 59.265 66.667 0.00 0.00 35.95 1.75
182 183 2.842936 CCGCGGGGAGGTCCTATT 60.843 66.667 20.10 0.00 35.95 1.73
204 205 2.531376 GCACGCCTAATACACGGCC 61.531 63.158 0.00 0.00 43.38 6.13
269 271 4.336433 CGGTATTGTCATTCAAAGCCAGAT 59.664 41.667 0.00 0.00 39.62 2.90
277 279 2.088423 GGCACCGGTATTGTCATTCAA 58.912 47.619 6.87 0.00 40.53 2.69
299 301 2.125961 ATAGGCTGTCCGGTCGTCC 61.126 63.158 0.00 0.68 37.47 4.79
306 308 0.107703 TTTGAGGCATAGGCTGTCCG 60.108 55.000 0.00 0.00 38.98 4.79
320 322 3.873952 GTGTATAGCAGGCCTCTTTTGAG 59.126 47.826 0.00 0.00 45.83 3.02
321 323 3.263170 TGTGTATAGCAGGCCTCTTTTGA 59.737 43.478 0.00 0.00 0.00 2.69
322 324 3.375299 GTGTGTATAGCAGGCCTCTTTTG 59.625 47.826 0.00 0.00 0.00 2.44
323 325 3.610911 GTGTGTATAGCAGGCCTCTTTT 58.389 45.455 0.00 0.00 0.00 2.27
324 326 2.418746 CGTGTGTATAGCAGGCCTCTTT 60.419 50.000 0.00 1.19 0.00 2.52
326 328 0.747255 CGTGTGTATAGCAGGCCTCT 59.253 55.000 0.00 6.08 0.00 3.69
327 329 0.744874 TCGTGTGTATAGCAGGCCTC 59.255 55.000 0.00 0.00 0.00 4.70
328 330 0.460311 GTCGTGTGTATAGCAGGCCT 59.540 55.000 0.00 0.00 0.00 5.19
329 331 0.870307 CGTCGTGTGTATAGCAGGCC 60.870 60.000 0.00 0.00 0.00 5.19
330 332 0.099968 TCGTCGTGTGTATAGCAGGC 59.900 55.000 0.00 0.00 0.00 4.85
331 333 2.776312 ATCGTCGTGTGTATAGCAGG 57.224 50.000 0.00 0.00 0.00 4.85
334 336 4.404324 CTGGATATCGTCGTGTGTATAGC 58.596 47.826 0.00 0.00 0.00 2.97
338 340 1.003223 CGCTGGATATCGTCGTGTGTA 60.003 52.381 0.00 0.00 0.00 2.90
339 341 0.248498 CGCTGGATATCGTCGTGTGT 60.248 55.000 0.00 0.00 0.00 3.72
340 342 0.028902 TCGCTGGATATCGTCGTGTG 59.971 55.000 0.00 0.00 0.00 3.82
341 343 0.952280 ATCGCTGGATATCGTCGTGT 59.048 50.000 0.00 0.00 0.00 4.49
342 344 2.051879 AATCGCTGGATATCGTCGTG 57.948 50.000 0.00 0.00 31.01 4.35
343 345 2.795175 AAATCGCTGGATATCGTCGT 57.205 45.000 0.00 0.00 31.01 4.34
344 346 4.915667 TCTTTAAATCGCTGGATATCGTCG 59.084 41.667 0.00 0.44 31.01 5.12
345 347 5.164177 CGTCTTTAAATCGCTGGATATCGTC 60.164 44.000 0.00 0.00 31.01 4.20
346 348 4.680110 CGTCTTTAAATCGCTGGATATCGT 59.320 41.667 0.00 0.00 31.01 3.73
347 349 4.915667 TCGTCTTTAAATCGCTGGATATCG 59.084 41.667 0.00 0.00 31.01 2.92
348 350 6.670927 GCATCGTCTTTAAATCGCTGGATATC 60.671 42.308 14.05 0.00 31.01 1.63
349 351 5.120830 GCATCGTCTTTAAATCGCTGGATAT 59.879 40.000 14.05 0.00 31.01 1.63
350 352 4.447724 GCATCGTCTTTAAATCGCTGGATA 59.552 41.667 14.05 0.00 31.01 2.59
351 353 3.248602 GCATCGTCTTTAAATCGCTGGAT 59.751 43.478 14.05 1.20 0.00 3.41
352 354 2.607635 GCATCGTCTTTAAATCGCTGGA 59.392 45.455 14.05 0.00 0.00 3.86
353 355 2.351418 TGCATCGTCTTTAAATCGCTGG 59.649 45.455 14.05 6.50 0.00 4.85
354 356 3.181521 TGTGCATCGTCTTTAAATCGCTG 60.182 43.478 0.00 10.33 0.00 5.18
355 357 3.000041 TGTGCATCGTCTTTAAATCGCT 59.000 40.909 0.00 0.00 0.00 4.93
356 358 3.383546 TGTGCATCGTCTTTAAATCGC 57.616 42.857 0.00 0.00 0.00 4.58
359 361 6.149308 TGTGATCTTGTGCATCGTCTTTAAAT 59.851 34.615 0.00 0.00 0.00 1.40
362 364 4.565022 TGTGATCTTGTGCATCGTCTTTA 58.435 39.130 0.00 0.00 0.00 1.85
363 365 3.402110 TGTGATCTTGTGCATCGTCTTT 58.598 40.909 0.00 0.00 0.00 2.52
365 367 2.749280 TGTGATCTTGTGCATCGTCT 57.251 45.000 0.00 0.00 0.00 4.18
367 369 1.399440 GCATGTGATCTTGTGCATCGT 59.601 47.619 10.50 0.00 37.52 3.73
368 370 1.268386 GGCATGTGATCTTGTGCATCG 60.268 52.381 15.22 0.00 39.27 3.84
369 371 1.066605 GGGCATGTGATCTTGTGCATC 59.933 52.381 15.22 6.44 39.27 3.91
370 372 1.108776 GGGCATGTGATCTTGTGCAT 58.891 50.000 15.22 1.87 39.27 3.96
372 374 0.454600 CTGGGCATGTGATCTTGTGC 59.545 55.000 7.85 7.85 36.88 4.57
373 375 0.454600 GCTGGGCATGTGATCTTGTG 59.545 55.000 0.00 0.00 0.00 3.33
374 376 0.038599 TGCTGGGCATGTGATCTTGT 59.961 50.000 0.00 0.00 31.71 3.16
375 377 0.738975 CTGCTGGGCATGTGATCTTG 59.261 55.000 0.00 0.00 38.13 3.02
376 378 1.035932 GCTGCTGGGCATGTGATCTT 61.036 55.000 0.00 0.00 38.13 2.40
377 379 1.453379 GCTGCTGGGCATGTGATCT 60.453 57.895 0.00 0.00 38.13 2.75
378 380 1.725557 CTGCTGCTGGGCATGTGATC 61.726 60.000 0.00 0.00 41.63 2.92
379 381 1.753078 CTGCTGCTGGGCATGTGAT 60.753 57.895 0.00 0.00 41.63 3.06
380 382 2.360726 CTGCTGCTGGGCATGTGA 60.361 61.111 0.00 0.00 41.63 3.58
384 386 3.640257 CTGTCCTGCTGCTGGGCAT 62.640 63.158 29.08 0.00 41.63 4.40
385 387 4.340246 CTGTCCTGCTGCTGGGCA 62.340 66.667 27.55 27.55 40.15 5.36
387 389 3.618780 GACCTGTCCTGCTGCTGGG 62.619 68.421 23.07 14.41 0.00 4.45
388 390 2.046507 GACCTGTCCTGCTGCTGG 60.047 66.667 18.44 18.44 0.00 4.85
389 391 2.046507 GGACCTGTCCTGCTGCTG 60.047 66.667 9.11 0.00 46.16 4.41
398 400 2.289195 TGTATTCAACGGTGGACCTGTC 60.289 50.000 0.00 0.00 0.00 3.51
399 401 1.695242 TGTATTCAACGGTGGACCTGT 59.305 47.619 0.00 0.00 0.00 4.00
400 402 2.289444 ACTGTATTCAACGGTGGACCTG 60.289 50.000 0.00 0.00 46.30 4.00
401 403 1.975680 ACTGTATTCAACGGTGGACCT 59.024 47.619 0.00 0.00 46.30 3.85
402 404 2.467566 ACTGTATTCAACGGTGGACC 57.532 50.000 0.00 0.00 46.30 4.46
408 410 0.719465 GCCGACACTGTATTCAACGG 59.281 55.000 0.00 0.00 41.44 4.44
409 411 1.390123 CAGCCGACACTGTATTCAACG 59.610 52.381 0.00 0.00 32.78 4.10
413 415 2.205074 CATCCAGCCGACACTGTATTC 58.795 52.381 0.00 0.00 35.83 1.75
415 417 1.137086 GACATCCAGCCGACACTGTAT 59.863 52.381 0.00 0.00 35.83 2.29
416 418 0.530744 GACATCCAGCCGACACTGTA 59.469 55.000 0.00 0.00 35.83 2.74
417 419 1.293498 GACATCCAGCCGACACTGT 59.707 57.895 0.00 0.00 35.83 3.55
418 420 1.807165 CGACATCCAGCCGACACTG 60.807 63.158 0.00 0.00 37.42 3.66
419 421 2.276116 ACGACATCCAGCCGACACT 61.276 57.895 0.00 0.00 0.00 3.55
422 424 0.102481 ATACACGACATCCAGCCGAC 59.898 55.000 0.00 0.00 0.00 4.79
423 425 0.102300 CATACACGACATCCAGCCGA 59.898 55.000 0.00 0.00 0.00 5.54
424 426 1.490693 GCATACACGACATCCAGCCG 61.491 60.000 0.00 0.00 0.00 5.52
425 427 0.461870 TGCATACACGACATCCAGCC 60.462 55.000 0.00 0.00 0.00 4.85
426 428 0.933097 CTGCATACACGACATCCAGC 59.067 55.000 0.00 0.00 0.00 4.85
427 429 1.929169 CACTGCATACACGACATCCAG 59.071 52.381 0.00 0.00 0.00 3.86
429 431 1.927174 GACACTGCATACACGACATCC 59.073 52.381 0.00 0.00 0.00 3.51
430 432 1.583856 CGACACTGCATACACGACATC 59.416 52.381 0.00 0.00 0.00 3.06
431 433 1.067846 ACGACACTGCATACACGACAT 60.068 47.619 9.66 0.00 0.00 3.06
432 434 0.312729 ACGACACTGCATACACGACA 59.687 50.000 9.66 0.00 0.00 4.35
437 439 3.078837 TCTGTAGACGACACTGCATACA 58.921 45.455 0.00 0.00 33.31 2.29
438 440 3.686128 CTCTGTAGACGACACTGCATAC 58.314 50.000 0.00 0.00 33.31 2.39
440 442 1.135257 GCTCTGTAGACGACACTGCAT 60.135 52.381 0.00 0.00 33.61 3.96
441 443 0.241213 GCTCTGTAGACGACACTGCA 59.759 55.000 0.00 0.00 33.61 4.41
442 444 0.241213 TGCTCTGTAGACGACACTGC 59.759 55.000 0.00 2.62 33.31 4.40
444 446 1.898902 ACTGCTCTGTAGACGACACT 58.101 50.000 0.00 0.00 33.31 3.55
445 447 2.708386 AACTGCTCTGTAGACGACAC 57.292 50.000 0.00 0.00 33.31 3.67
446 448 2.350484 CGAAACTGCTCTGTAGACGACA 60.350 50.000 0.00 0.00 36.35 4.35
447 449 2.243407 CGAAACTGCTCTGTAGACGAC 58.757 52.381 0.00 0.00 0.00 4.34
450 452 1.351153 GCCGAAACTGCTCTGTAGAC 58.649 55.000 0.00 0.00 0.00 2.59
453 455 0.246635 GAGGCCGAAACTGCTCTGTA 59.753 55.000 0.00 0.00 0.00 2.74
454 456 1.004440 GAGGCCGAAACTGCTCTGT 60.004 57.895 0.00 0.00 0.00 3.41
455 457 0.603707 TTGAGGCCGAAACTGCTCTG 60.604 55.000 0.00 0.00 0.00 3.35
456 458 0.108585 TTTGAGGCCGAAACTGCTCT 59.891 50.000 0.00 0.00 0.00 4.09
457 459 0.951558 TTTTGAGGCCGAAACTGCTC 59.048 50.000 0.00 0.00 0.00 4.26
459 461 1.487482 GTTTTTGAGGCCGAAACTGC 58.513 50.000 15.29 2.73 32.13 4.40
460 462 1.753956 CGTTTTTGAGGCCGAAACTG 58.246 50.000 18.26 11.61 32.55 3.16
461 463 0.030235 GCGTTTTTGAGGCCGAAACT 59.970 50.000 18.26 0.00 32.55 2.66
462 464 2.502163 GCGTTTTTGAGGCCGAAAC 58.498 52.632 13.56 13.56 33.08 2.78
468 470 3.636282 TCTTTTAGGCGTTTTTGAGGC 57.364 42.857 0.00 0.00 38.40 4.70
469 471 6.895607 TTTTTCTTTTAGGCGTTTTTGAGG 57.104 33.333 0.00 0.00 0.00 3.86
492 494 4.788617 TCTTTTTGAGGGGTAGGCTCTATT 59.211 41.667 0.00 0.00 0.00 1.73
493 495 4.371681 TCTTTTTGAGGGGTAGGCTCTAT 58.628 43.478 0.00 0.00 0.00 1.98
494 496 3.798515 TCTTTTTGAGGGGTAGGCTCTA 58.201 45.455 0.00 0.00 0.00 2.43
496 498 3.434940 TTCTTTTTGAGGGGTAGGCTC 57.565 47.619 0.00 0.00 0.00 4.70
541 3419 0.250166 ACTACACCAACGGCAAGACC 60.250 55.000 0.00 0.00 0.00 3.85
646 3533 0.719465 AGAAATTACAAGCGACGCCG 59.281 50.000 17.79 10.94 39.16 6.46
647 3534 2.505866 CAAGAAATTACAAGCGACGCC 58.494 47.619 17.79 0.00 0.00 5.68
652 3539 5.672321 GCTCTTCTCCAAGAAATTACAAGCG 60.672 44.000 0.00 0.00 38.23 4.68
653 3540 5.414144 AGCTCTTCTCCAAGAAATTACAAGC 59.586 40.000 0.00 0.00 38.23 4.01
678 3565 2.992114 CGGGGGCGGATAGAGAGG 60.992 72.222 0.00 0.00 0.00 3.69
718 3605 1.444917 GGATTGATTCGGCCGAACCC 61.445 60.000 40.84 32.44 36.91 4.11
733 3823 3.191371 GCAGTGATTCGTTTCCTTGGATT 59.809 43.478 0.00 0.00 0.00 3.01
763 3853 2.123726 ATCTGCGGGGGAATTGGC 60.124 61.111 0.00 0.00 0.00 4.52
914 4013 1.635817 TGGAGTTCCTAGCCCATGGC 61.636 60.000 6.09 1.62 42.58 4.40
927 4026 2.113986 GTGGCTGCAGGTGGAGTT 59.886 61.111 17.12 0.00 35.78 3.01
1031 4136 9.517609 CAACACTTGTGATATACTACTTACTCC 57.482 37.037 7.83 0.00 0.00 3.85
1032 4137 9.517609 CCAACACTTGTGATATACTACTTACTC 57.482 37.037 7.83 0.00 0.00 2.59
1037 4142 6.294361 TGCCAACACTTGTGATATACTACT 57.706 37.500 7.83 0.00 0.00 2.57
1038 4143 6.978343 TTGCCAACACTTGTGATATACTAC 57.022 37.500 7.83 0.00 0.00 2.73
1058 4164 5.292765 TCAGCAGCTGTAGAATAGTATTGC 58.707 41.667 22.10 0.00 32.61 3.56
1064 4170 3.497640 GCCAATCAGCAGCTGTAGAATAG 59.502 47.826 22.10 7.13 32.61 1.73
1067 4174 1.679944 GGCCAATCAGCAGCTGTAGAA 60.680 52.381 22.10 2.89 32.61 2.10
1079 4186 3.050166 GCATTCGCGTGGCCAATCA 62.050 57.895 7.24 0.00 0.00 2.57
1110 4217 4.000988 AGGACAAAGTTGTACATAAGCCG 58.999 43.478 9.05 0.00 44.60 5.52
1111 4218 5.246307 AGAGGACAAAGTTGTACATAAGCC 58.754 41.667 9.05 0.00 44.60 4.35
1112 4219 6.803154 AAGAGGACAAAGTTGTACATAAGC 57.197 37.500 9.05 0.00 44.60 3.09
1113 4220 9.490379 ACTAAAGAGGACAAAGTTGTACATAAG 57.510 33.333 9.05 2.08 44.60 1.73
1114 4221 9.841295 AACTAAAGAGGACAAAGTTGTACATAA 57.159 29.630 9.05 0.00 44.60 1.90
1116 4223 9.490379 CTAACTAAAGAGGACAAAGTTGTACAT 57.510 33.333 9.05 0.00 44.60 2.29
1117 4224 8.480501 ACTAACTAAAGAGGACAAAGTTGTACA 58.519 33.333 9.05 0.00 44.60 2.90
1118 4225 8.883954 ACTAACTAAAGAGGACAAAGTTGTAC 57.116 34.615 0.00 0.00 42.43 2.90
1119 4226 9.895138 AAACTAACTAAAGAGGACAAAGTTGTA 57.105 29.630 0.00 0.00 42.43 2.41
1120 4227 8.803397 AAACTAACTAAAGAGGACAAAGTTGT 57.197 30.769 0.00 0.00 45.65 3.32
1186 4297 2.159612 GGTAACAATCGCCCGAAAAGAC 60.160 50.000 0.00 0.00 0.00 3.01
1187 4298 2.078392 GGTAACAATCGCCCGAAAAGA 58.922 47.619 0.00 0.00 0.00 2.52
1228 4343 5.514500 AACCCAGGATAAACAAGAAGCTA 57.486 39.130 0.00 0.00 0.00 3.32
1260 4376 2.142357 TTGTCTCCTCGGCACTCACG 62.142 60.000 0.00 0.00 0.00 4.35
1287 4403 6.893583 TCCAAATGGGAAGAACAAATGAAAA 58.106 32.000 0.00 0.00 44.80 2.29
1417 4536 5.044846 AGGTGGGAATATGTAATATCTGCCC 60.045 44.000 0.00 0.00 38.94 5.36
1418 4537 5.882557 CAGGTGGGAATATGTAATATCTGCC 59.117 44.000 0.00 0.00 38.94 4.85
1419 4538 5.355350 GCAGGTGGGAATATGTAATATCTGC 59.645 44.000 0.00 0.00 38.94 4.26
1420 4539 5.882557 GGCAGGTGGGAATATGTAATATCTG 59.117 44.000 0.00 0.00 38.94 2.90
1421 4540 5.044846 GGGCAGGTGGGAATATGTAATATCT 60.045 44.000 0.00 0.00 38.94 1.98
1422 4541 5.193679 GGGCAGGTGGGAATATGTAATATC 58.806 45.833 0.00 0.00 38.94 1.63
1423 4542 4.605813 TGGGCAGGTGGGAATATGTAATAT 59.394 41.667 0.00 0.00 42.49 1.28
1424 4543 3.984090 TGGGCAGGTGGGAATATGTAATA 59.016 43.478 0.00 0.00 0.00 0.98
1425 4544 2.788807 TGGGCAGGTGGGAATATGTAAT 59.211 45.455 0.00 0.00 0.00 1.89
1426 4545 2.174639 CTGGGCAGGTGGGAATATGTAA 59.825 50.000 0.00 0.00 0.00 2.41
1427 4546 1.774254 CTGGGCAGGTGGGAATATGTA 59.226 52.381 0.00 0.00 0.00 2.29
1428 4547 0.552848 CTGGGCAGGTGGGAATATGT 59.447 55.000 0.00 0.00 0.00 2.29
1474 4593 2.223805 GGCGGATGAAAATGTGGATTCC 60.224 50.000 0.00 0.00 0.00 3.01
1603 4722 6.183361 CCTGCAATAAGATCTTTACCCTCTCT 60.183 42.308 14.36 0.00 0.00 3.10
1651 4770 1.021202 CACAAGCAACGGAACTGGAA 58.979 50.000 0.00 0.00 0.00 3.53
1652 4771 0.817634 CCACAAGCAACGGAACTGGA 60.818 55.000 0.00 0.00 0.00 3.86
1653 4772 1.101049 ACCACAAGCAACGGAACTGG 61.101 55.000 0.00 0.00 0.00 4.00
1654 4773 0.029300 CACCACAAGCAACGGAACTG 59.971 55.000 0.00 0.00 0.00 3.16
1655 4774 0.107410 TCACCACAAGCAACGGAACT 60.107 50.000 0.00 0.00 0.00 3.01
1656 4775 0.951558 ATCACCACAAGCAACGGAAC 59.048 50.000 0.00 0.00 0.00 3.62
1720 4846 6.323996 TGAGTTCTTGTCTAGAAAGGAACAGA 59.676 38.462 29.58 17.73 44.25 3.41
1726 4852 5.221742 ACCCTTGAGTTCTTGTCTAGAAAGG 60.222 44.000 0.00 0.34 44.25 3.11
1804 4930 4.807443 ACTTACTTGTAGAAGCCTCGAAC 58.193 43.478 0.00 0.00 31.68 3.95
1856 5049 3.729526 ATCAAGACGCTGAATTCAACG 57.270 42.857 25.35 25.35 40.83 4.10
2093 5287 1.900486 GGGTAGGTACACAGAACTGCT 59.100 52.381 1.46 0.00 0.00 4.24
2240 5438 1.549203 AACCATGAGCCAATGTGACC 58.451 50.000 0.00 0.00 0.00 4.02
2420 5618 2.760634 TTCGCAAGTTGATAGCCTCA 57.239 45.000 7.16 0.00 39.48 3.86
2486 5684 6.624423 ACATAAAAGCTTTGCAAGTATGGAG 58.376 36.000 22.61 7.16 0.00 3.86
2536 5734 2.159282 GCATTCCAAGCATTCACCTGAG 60.159 50.000 0.00 0.00 0.00 3.35
2764 5964 2.933495 TGTAGCGCACTAAGTGGTAG 57.067 50.000 11.47 0.00 40.97 3.18
2776 5976 5.409643 ACATGACTTTTCATATGTAGCGC 57.590 39.130 0.00 0.00 40.79 5.92
2827 6027 3.251729 GTCATGCAGTGTAATGCTATGGG 59.748 47.826 5.88 0.00 46.63 4.00
3113 6313 2.094286 ACAGGTCAGAAGCGAATCAGAG 60.094 50.000 0.00 0.00 0.00 3.35
3385 6585 3.496884 TCGTGAAACCAATAGCAACTGAC 59.503 43.478 0.00 0.00 0.00 3.51
3707 6909 8.345565 CAGCTCAAAACTACTGTACATTTTTCT 58.654 33.333 0.00 0.00 0.00 2.52
3708 6910 7.113544 GCAGCTCAAAACTACTGTACATTTTTC 59.886 37.037 0.00 0.00 32.65 2.29
3752 6957 6.757897 TTTTTGCTGACCTATGTCTTATGG 57.242 37.500 0.00 0.00 42.28 2.74
3756 6961 6.899393 TTCATTTTTGCTGACCTATGTCTT 57.101 33.333 0.00 0.00 42.28 3.01
3757 6962 6.899393 TTTCATTTTTGCTGACCTATGTCT 57.101 33.333 0.00 0.00 42.28 3.41
3800 7034 6.962311 TGAGGCTATAGGGAACTGATTCATAT 59.038 38.462 1.04 0.00 43.88 1.78
3935 7178 5.467902 TTTCACATGCACAAAAAGAAAGC 57.532 34.783 0.00 0.00 0.00 3.51
4181 7433 3.932545 TGCAGTTGTGTGTTCTTTTGT 57.067 38.095 0.00 0.00 0.00 2.83
4197 7449 2.153645 TGGATGCTGTACAGTTTGCAG 58.846 47.619 23.44 0.00 40.77 4.41
4256 7508 6.628844 GCTGCCAGATTTATCCATTTGTCTTT 60.629 38.462 0.00 0.00 0.00 2.52
4275 7527 1.468506 TAGTTCCGTGTCAGCTGCCA 61.469 55.000 9.47 0.00 0.00 4.92
4490 7742 4.518970 GTGGAAGAAATTCAGGCTGTTGTA 59.481 41.667 15.27 0.00 0.00 2.41
4573 7825 4.148825 CCGAGGCCGAGGACAAGG 62.149 72.222 13.48 0.00 38.22 3.61
4632 7887 7.972832 ACTAGTAATGTTTTGACGATTTGGA 57.027 32.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.