Multiple sequence alignment - TraesCS3D01G209100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G209100 chr3D 100.000 6851 0 0 1 6851 276536338 276543188 0.000000e+00 12652.0
1 TraesCS3D01G209100 chr3A 96.157 6193 148 28 1 6135 363460893 363454733 0.000000e+00 10035.0
2 TraesCS3D01G209100 chr3A 91.544 272 14 8 6583 6851 363454231 363453966 3.900000e-97 366.0
3 TraesCS3D01G209100 chr3A 88.014 292 11 7 6171 6459 363454737 363454467 2.380000e-84 324.0
4 TraesCS3D01G209100 chr3A 93.750 48 3 0 6482 6529 363454475 363454428 9.530000e-09 73.1
5 TraesCS3D01G209100 chr3A 97.059 34 1 0 6542 6575 363454396 363454363 2.670000e-04 58.4
6 TraesCS3D01G209100 chr3B 95.598 5270 145 38 870 6095 373878422 373873196 0.000000e+00 8366.0
7 TraesCS3D01G209100 chr3B 89.718 603 58 4 262 863 373879072 373878473 0.000000e+00 767.0
8 TraesCS3D01G209100 chr3B 82.230 574 19 25 6310 6851 373847579 373847057 1.060000e-112 418.0
9 TraesCS3D01G209100 chr3B 91.304 161 12 2 1 161 373879648 373879490 1.160000e-52 219.0
10 TraesCS3D01G209100 chr3B 88.050 159 13 2 1 159 373879999 373879847 4.220000e-42 183.0
11 TraesCS3D01G209100 chr3B 91.589 107 4 2 6227 6328 373847706 373847600 7.160000e-30 143.0
12 TraesCS3D01G209100 chr7B 90.196 51 5 0 803 853 612089918 612089868 4.430000e-07 67.6
13 TraesCS3D01G209100 chr7A 90.196 51 4 1 803 853 360490475 360490426 1.590000e-06 65.8
14 TraesCS3D01G209100 chr5B 96.970 33 1 0 167 199 508240105 508240073 1.000000e-03 56.5
15 TraesCS3D01G209100 chr1B 90.244 41 4 0 813 853 607813570 607813530 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G209100 chr3D 276536338 276543188 6850 False 12652.00 12652 100.0000 1 6851 1 chr3D.!!$F1 6850
1 TraesCS3D01G209100 chr3A 363453966 363460893 6927 True 2171.30 10035 93.3048 1 6851 5 chr3A.!!$R1 6850
2 TraesCS3D01G209100 chr3B 373873196 373879999 6803 True 2383.75 8366 91.1675 1 6095 4 chr3B.!!$R2 6094
3 TraesCS3D01G209100 chr3B 373847057 373847706 649 True 280.50 418 86.9095 6227 6851 2 chr3B.!!$R1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 1691 0.179073 CGAATGAGATCGGCTTGGGT 60.179 55.0 0.00 0.00 39.12 4.51 F
1047 1901 0.182775 AAACCCTACATCCCATCGCC 59.817 55.0 0.00 0.00 0.00 5.54 F
1837 2695 0.698818 ACATTGGTGAGTTCCCCCTC 59.301 55.0 0.00 0.00 0.00 4.30 F
2703 3566 0.689080 ATCGGCATCTCCCTGTCAGT 60.689 55.0 0.00 0.00 0.00 3.41 F
2714 3577 2.027192 TCCCTGTCAGTAGTTCAATGGC 60.027 50.0 0.00 0.00 0.00 4.40 F
3970 4834 2.727123 TATGGCCCGTGTTTCATCAT 57.273 45.0 0.00 0.00 0.00 2.45 F
4743 5607 0.588252 CGGTCTCAACCAAGTGCTTG 59.412 55.0 5.03 5.03 46.86 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 2695 1.197721 GTGAAAGCTGGTCGGACAATG 59.802 52.381 10.76 0.48 0.00 2.82 R
2200 3058 1.817941 CCCATCCGCAGGGTTAACG 60.818 63.158 0.00 0.00 39.56 3.18 R
3797 4661 2.166459 CCGATTAGTTGGAGCTGACTCA 59.834 50.000 0.00 0.00 45.42 3.41 R
4036 4900 6.349777 CCGGCCTGACAAAGAAATTTATTACA 60.350 38.462 0.00 0.25 0.00 2.41 R
4710 5574 2.224942 TGAGACCGTTCTAGTGGGAAGA 60.225 50.000 3.98 0.00 29.47 2.87 R
5121 5985 1.078918 CTGTCCAGCGGCAATCTGA 60.079 57.895 1.45 0.00 33.54 3.27 R
6229 7136 0.177373 GTCCCCCGTCCTCACATAAC 59.823 60.000 0.00 0.00 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 411 5.794726 TGCTAGTTGTAGACTTGTGGTAA 57.205 39.130 0.00 0.00 39.86 2.85
79 430 0.995024 ACTCTTAGGCAGCCACCATT 59.005 50.000 15.80 0.00 0.00 3.16
82 433 3.010138 ACTCTTAGGCAGCCACCATTAAA 59.990 43.478 15.80 0.00 0.00 1.52
143 494 6.785963 CCTAAGGTCCAAGTATGTAGGGATTA 59.214 42.308 0.00 0.00 0.00 1.75
150 880 8.877195 GTCCAAGTATGTAGGGATTAGGATTTA 58.123 37.037 0.00 0.00 0.00 1.40
194 924 1.320512 GGGTGGAGGGAAGGGGATA 59.679 63.158 0.00 0.00 0.00 2.59
199 929 1.141185 GGAGGGAAGGGGATAACCAG 58.859 60.000 0.00 0.00 42.91 4.00
200 930 0.474614 GAGGGAAGGGGATAACCAGC 59.525 60.000 0.00 0.00 42.91 4.85
201 931 0.994050 AGGGAAGGGGATAACCAGCC 60.994 60.000 0.00 0.00 42.91 4.85
229 959 0.409484 CCCAACCCCTCAAACCTCAT 59.591 55.000 0.00 0.00 0.00 2.90
251 981 8.862325 TCATATGTGTGAAAAAGACCAATACT 57.138 30.769 1.90 0.00 0.00 2.12
304 1034 6.926630 TTGGATGTGTAAAGGCCTTATTTT 57.073 33.333 20.84 5.38 0.00 1.82
357 1087 3.461773 CGCATCCCCTCACCGTCT 61.462 66.667 0.00 0.00 0.00 4.18
358 1088 2.501610 GCATCCCCTCACCGTCTC 59.498 66.667 0.00 0.00 0.00 3.36
364 1094 2.115911 CCCTCACCGTCTCTCGAGG 61.116 68.421 13.56 3.44 42.86 4.63
376 1106 2.300152 TCTCTCGAGGCTTGAAACATGT 59.700 45.455 13.56 0.00 0.00 3.21
437 1194 2.026636 TGATAGGGTTTCGAAGGTTGGG 60.027 50.000 0.00 0.00 0.00 4.12
487 1245 1.334149 GCAACTTCAAGCTCCGTGTTC 60.334 52.381 0.00 0.00 0.00 3.18
491 1249 4.430423 CAAGCTCCGTGTTCGCGC 62.430 66.667 0.00 0.00 35.54 6.86
535 1293 0.690762 TGAAGGAGTTAGGCCACACC 59.309 55.000 5.01 3.10 39.61 4.16
646 1407 4.202161 ACGGATAGAGACTATGCCAAGTTG 60.202 45.833 0.00 0.00 0.00 3.16
695 1456 3.884895 TCGGACATCACCAAAATATGCT 58.115 40.909 0.00 0.00 0.00 3.79
784 1545 9.995003 ACCAAATTTACATTTTAGCTTGAATCA 57.005 25.926 0.00 0.00 29.41 2.57
796 1557 3.691609 AGCTTGAATCAGGTTCGGAATTC 59.308 43.478 0.00 0.00 39.80 2.17
885 1691 0.179073 CGAATGAGATCGGCTTGGGT 60.179 55.000 0.00 0.00 39.12 4.51
972 1778 4.941309 ACCAAACCACCCGCGACC 62.941 66.667 8.23 0.00 0.00 4.79
1026 1879 3.243907 CCGCCTCTTAATCCCTCTACAAG 60.244 52.174 0.00 0.00 0.00 3.16
1047 1901 0.182775 AAACCCTACATCCCATCGCC 59.817 55.000 0.00 0.00 0.00 5.54
1065 1919 3.339093 CCCCTTCCACCCTCCACC 61.339 72.222 0.00 0.00 0.00 4.61
1711 2569 4.671569 CTCCCTGCTATCCGCGCC 62.672 72.222 0.00 0.00 43.27 6.53
1837 2695 0.698818 ACATTGGTGAGTTCCCCCTC 59.301 55.000 0.00 0.00 0.00 4.30
2014 2872 1.746615 GGTGATGCGTGACATGGCT 60.747 57.895 0.00 0.00 39.84 4.75
2200 3058 1.503542 CTCCAATGTGCAGTTCGCC 59.496 57.895 0.00 0.00 41.33 5.54
2293 3151 2.154074 AAAGGCGACTGGGTTCCCT 61.154 57.895 9.43 0.00 42.68 4.20
2435 3293 7.025963 GGTAGTCATTTTGAATCTCTTTGCAG 58.974 38.462 0.00 0.00 0.00 4.41
2703 3566 0.689080 ATCGGCATCTCCCTGTCAGT 60.689 55.000 0.00 0.00 0.00 3.41
2714 3577 2.027192 TCCCTGTCAGTAGTTCAATGGC 60.027 50.000 0.00 0.00 0.00 4.40
2938 3801 6.106673 GTGTTCCTACTTCTAATTGCTAGCA 58.893 40.000 14.93 14.93 0.00 3.49
3182 4046 3.985925 CGGAGGTTGTACTTGTACTGTTC 59.014 47.826 11.53 5.18 0.00 3.18
3476 4340 4.319139 TGCTGTTTATGCTGCTTTCAAA 57.681 36.364 0.00 0.00 34.93 2.69
3958 4822 3.703921 TCCACCTTACTTTTTATGGCCC 58.296 45.455 0.00 0.00 0.00 5.80
3970 4834 2.727123 TATGGCCCGTGTTTCATCAT 57.273 45.000 0.00 0.00 0.00 2.45
4710 5574 3.708403 TCTGGTGATTCTGCATGTTCT 57.292 42.857 0.00 0.00 0.00 3.01
4743 5607 0.588252 CGGTCTCAACCAAGTGCTTG 59.412 55.000 5.03 5.03 46.86 4.01
5034 5898 5.481473 TCTTCCATTTGAGAAATTCCAAGGG 59.519 40.000 0.00 1.22 34.61 3.95
5121 5985 4.645921 GGCGCGTTTGCAAAGGCT 62.646 61.111 38.53 0.00 44.93 4.58
5669 6545 0.533755 ACTAGAATCCTGCGCCATGC 60.534 55.000 4.18 0.00 46.70 4.06
5680 6556 0.390209 GCGCCATGCAGGATTTTGTT 60.390 50.000 0.00 0.00 45.45 2.83
5681 6557 1.940752 GCGCCATGCAGGATTTTGTTT 60.941 47.619 0.00 0.00 45.45 2.83
5682 6558 2.673610 GCGCCATGCAGGATTTTGTTTA 60.674 45.455 0.00 0.00 45.45 2.01
5683 6559 2.923020 CGCCATGCAGGATTTTGTTTAC 59.077 45.455 0.00 0.00 41.22 2.01
5684 6560 3.261580 GCCATGCAGGATTTTGTTTACC 58.738 45.455 0.00 0.00 41.22 2.85
5685 6561 3.055891 GCCATGCAGGATTTTGTTTACCT 60.056 43.478 0.00 0.00 41.22 3.08
5690 6566 3.578688 CAGGATTTTGTTTACCTGCTGC 58.421 45.455 0.00 0.00 42.30 5.25
5691 6567 3.256631 CAGGATTTTGTTTACCTGCTGCT 59.743 43.478 0.00 0.00 42.30 4.24
5692 6568 4.458989 CAGGATTTTGTTTACCTGCTGCTA 59.541 41.667 0.00 0.00 42.30 3.49
5693 6569 4.459337 AGGATTTTGTTTACCTGCTGCTAC 59.541 41.667 0.00 0.00 0.00 3.58
5694 6570 3.889196 TTTTGTTTACCTGCTGCTACG 57.111 42.857 0.00 0.00 0.00 3.51
5695 6571 2.823924 TTGTTTACCTGCTGCTACGA 57.176 45.000 0.00 0.00 0.00 3.43
5774 6672 5.846203 AGTGTTGGGAGTCAAAAATTGATG 58.154 37.500 0.00 0.00 42.47 3.07
5860 6760 3.087031 CTCCAGTTGCAATCTGATGGTT 58.913 45.455 22.59 0.00 35.20 3.67
5873 6774 5.282055 TCTGATGGTTGTATCATCTCCAC 57.718 43.478 0.00 0.00 41.01 4.02
6000 6907 0.037419 TGGTTACCCGCGGTTTCTAC 60.037 55.000 26.12 13.81 37.09 2.59
6044 6951 6.855763 TTGCATCTCCACATAAAAATCCTT 57.144 33.333 0.00 0.00 0.00 3.36
6057 6964 5.643379 AAAAATCCTTCTGCGCTTGAATA 57.357 34.783 9.73 5.32 0.00 1.75
6101 7008 9.103048 CGTCTCAATGTTTGTTAGTTATGTTTC 57.897 33.333 0.00 0.00 0.00 2.78
6118 7025 2.093306 TTCGTGTCGGCAAATGATCT 57.907 45.000 0.00 0.00 0.00 2.75
6129 7036 4.248058 GGCAAATGATCTTTCTGTTTGGG 58.752 43.478 0.00 0.00 33.05 4.12
6135 7042 9.323985 CAAATGATCTTTCTGTTTGGGTTTTTA 57.676 29.630 0.00 0.00 30.90 1.52
6136 7043 8.887036 AATGATCTTTCTGTTTGGGTTTTTAC 57.113 30.769 0.00 0.00 0.00 2.01
6137 7044 7.411486 TGATCTTTCTGTTTGGGTTTTTACA 57.589 32.000 0.00 0.00 0.00 2.41
6138 7045 7.262048 TGATCTTTCTGTTTGGGTTTTTACAC 58.738 34.615 0.00 0.00 0.00 2.90
6139 7046 5.642686 TCTTTCTGTTTGGGTTTTTACACG 58.357 37.500 0.00 0.00 0.00 4.49
6140 7047 5.415077 TCTTTCTGTTTGGGTTTTTACACGA 59.585 36.000 0.00 0.00 0.00 4.35
6141 7048 4.886247 TCTGTTTGGGTTTTTACACGAG 57.114 40.909 0.00 0.00 0.00 4.18
6142 7049 4.263435 TCTGTTTGGGTTTTTACACGAGT 58.737 39.130 0.00 0.00 0.00 4.18
6143 7050 4.701171 TCTGTTTGGGTTTTTACACGAGTT 59.299 37.500 0.00 0.00 0.00 3.01
6144 7051 5.183522 TCTGTTTGGGTTTTTACACGAGTTT 59.816 36.000 0.00 0.00 0.00 2.66
6145 7052 5.400703 TGTTTGGGTTTTTACACGAGTTTC 58.599 37.500 0.00 0.00 0.00 2.78
6146 7053 5.048224 TGTTTGGGTTTTTACACGAGTTTCA 60.048 36.000 0.00 0.00 0.00 2.69
6147 7054 4.886247 TGGGTTTTTACACGAGTTTCAG 57.114 40.909 0.00 0.00 0.00 3.02
6148 7055 3.628487 TGGGTTTTTACACGAGTTTCAGG 59.372 43.478 0.00 0.00 0.00 3.86
6149 7056 3.549423 GGGTTTTTACACGAGTTTCAGGC 60.549 47.826 0.00 0.00 0.00 4.85
6150 7057 3.065648 GGTTTTTACACGAGTTTCAGGCA 59.934 43.478 0.00 0.00 0.00 4.75
6151 7058 4.439016 GGTTTTTACACGAGTTTCAGGCAA 60.439 41.667 0.00 0.00 0.00 4.52
6152 7059 5.278604 GTTTTTACACGAGTTTCAGGCAAT 58.721 37.500 0.00 0.00 0.00 3.56
6153 7060 4.742438 TTTACACGAGTTTCAGGCAATC 57.258 40.909 0.00 0.00 0.00 2.67
6154 7061 2.550830 ACACGAGTTTCAGGCAATCT 57.449 45.000 0.00 0.00 0.00 2.40
6155 7062 2.417719 ACACGAGTTTCAGGCAATCTC 58.582 47.619 0.00 0.00 0.00 2.75
6156 7063 2.037772 ACACGAGTTTCAGGCAATCTCT 59.962 45.455 0.00 0.00 31.03 3.10
6157 7064 2.670414 CACGAGTTTCAGGCAATCTCTC 59.330 50.000 0.00 0.00 31.03 3.20
6158 7065 2.564947 ACGAGTTTCAGGCAATCTCTCT 59.435 45.455 0.00 0.00 31.03 3.10
6159 7066 3.186119 CGAGTTTCAGGCAATCTCTCTC 58.814 50.000 0.00 0.00 31.03 3.20
6160 7067 3.119173 CGAGTTTCAGGCAATCTCTCTCT 60.119 47.826 0.00 0.00 31.03 3.10
6161 7068 4.432712 GAGTTTCAGGCAATCTCTCTCTC 58.567 47.826 0.00 0.00 30.70 3.20
6162 7069 4.095946 AGTTTCAGGCAATCTCTCTCTCT 58.904 43.478 0.00 0.00 0.00 3.10
6163 7070 4.160252 AGTTTCAGGCAATCTCTCTCTCTC 59.840 45.833 0.00 0.00 0.00 3.20
6164 7071 3.668141 TCAGGCAATCTCTCTCTCTCT 57.332 47.619 0.00 0.00 0.00 3.10
6165 7072 3.554934 TCAGGCAATCTCTCTCTCTCTC 58.445 50.000 0.00 0.00 0.00 3.20
6166 7073 3.202818 TCAGGCAATCTCTCTCTCTCTCT 59.797 47.826 0.00 0.00 0.00 3.10
6167 7074 3.567164 CAGGCAATCTCTCTCTCTCTCTC 59.433 52.174 0.00 0.00 0.00 3.20
6168 7075 3.461085 AGGCAATCTCTCTCTCTCTCTCT 59.539 47.826 0.00 0.00 0.00 3.10
6169 7076 3.817647 GGCAATCTCTCTCTCTCTCTCTC 59.182 52.174 0.00 0.00 0.00 3.20
6170 7077 4.445448 GGCAATCTCTCTCTCTCTCTCTCT 60.445 50.000 0.00 0.00 0.00 3.10
6171 7078 5.128919 GCAATCTCTCTCTCTCTCTCTCTT 58.871 45.833 0.00 0.00 0.00 2.85
6172 7079 5.591877 GCAATCTCTCTCTCTCTCTCTCTTT 59.408 44.000 0.00 0.00 0.00 2.52
6173 7080 6.238593 GCAATCTCTCTCTCTCTCTCTCTTTC 60.239 46.154 0.00 0.00 0.00 2.62
6174 7081 6.821616 ATCTCTCTCTCTCTCTCTCTTTCT 57.178 41.667 0.00 0.00 0.00 2.52
6206 7113 3.810310 AGGCAATCTCTCTTTCGTAGG 57.190 47.619 0.00 0.00 0.00 3.18
6221 7128 1.359848 GTAGGCACGTTGAGATGGTG 58.640 55.000 0.00 0.00 34.85 4.17
6222 7129 1.067142 GTAGGCACGTTGAGATGGTGA 60.067 52.381 0.00 0.00 33.58 4.02
6223 7130 0.615331 AGGCACGTTGAGATGGTGAT 59.385 50.000 0.00 0.00 33.58 3.06
6224 7131 0.729116 GGCACGTTGAGATGGTGATG 59.271 55.000 0.00 0.00 33.58 3.07
6225 7132 1.442769 GCACGTTGAGATGGTGATGT 58.557 50.000 0.00 0.00 33.58 3.06
6226 7133 1.129251 GCACGTTGAGATGGTGATGTG 59.871 52.381 0.00 0.00 33.58 3.21
6227 7134 2.687370 CACGTTGAGATGGTGATGTGA 58.313 47.619 0.00 0.00 33.58 3.58
6228 7135 3.264947 CACGTTGAGATGGTGATGTGAT 58.735 45.455 0.00 0.00 33.58 3.06
6229 7136 3.063045 CACGTTGAGATGGTGATGTGATG 59.937 47.826 0.00 0.00 33.58 3.07
6230 7137 3.264947 CGTTGAGATGGTGATGTGATGT 58.735 45.455 0.00 0.00 0.00 3.06
6231 7138 3.686241 CGTTGAGATGGTGATGTGATGTT 59.314 43.478 0.00 0.00 0.00 2.71
6400 7353 6.796426 TGTAAAACGATTCAATGGTCAAACA 58.204 32.000 0.00 0.00 0.00 2.83
6401 7354 6.693545 TGTAAAACGATTCAATGGTCAAACAC 59.306 34.615 0.00 0.00 0.00 3.32
6402 7355 4.909696 AACGATTCAATGGTCAAACACA 57.090 36.364 0.00 0.00 0.00 3.72
6403 7356 4.223320 ACGATTCAATGGTCAAACACAC 57.777 40.909 0.00 0.00 0.00 3.82
6404 7357 3.629855 ACGATTCAATGGTCAAACACACA 59.370 39.130 0.00 0.00 0.00 3.72
6405 7358 4.278170 ACGATTCAATGGTCAAACACACAT 59.722 37.500 0.00 0.00 0.00 3.21
6406 7359 5.471797 ACGATTCAATGGTCAAACACACATA 59.528 36.000 0.00 0.00 0.00 2.29
6407 7360 6.016693 ACGATTCAATGGTCAAACACACATAA 60.017 34.615 0.00 0.00 0.00 1.90
6408 7361 6.524239 CGATTCAATGGTCAAACACACATAAG 59.476 38.462 0.00 0.00 0.00 1.73
6431 7384 3.129462 ACACACACACTCGGAGATAGATG 59.871 47.826 12.86 1.34 33.89 2.90
6453 7406 8.743714 AGATGTTTGCCTTAGAAAATTAGAAGG 58.256 33.333 0.00 0.00 41.26 3.46
6454 7407 8.650143 ATGTTTGCCTTAGAAAATTAGAAGGA 57.350 30.769 3.71 0.00 40.88 3.36
6455 7408 8.110860 TGTTTGCCTTAGAAAATTAGAAGGAG 57.889 34.615 3.71 0.00 40.88 3.69
6456 7409 6.759497 TTGCCTTAGAAAATTAGAAGGAGC 57.241 37.500 3.71 0.00 40.88 4.70
6457 7410 5.815581 TGCCTTAGAAAATTAGAAGGAGCA 58.184 37.500 3.71 0.00 40.88 4.26
6458 7411 6.426587 TGCCTTAGAAAATTAGAAGGAGCAT 58.573 36.000 3.71 0.00 40.88 3.79
6459 7412 6.543831 TGCCTTAGAAAATTAGAAGGAGCATC 59.456 38.462 3.71 0.00 40.88 3.91
6474 7427 3.609853 GAGCATCCATACAAAGGTGACA 58.390 45.455 0.00 0.00 0.00 3.58
6475 7428 3.347216 AGCATCCATACAAAGGTGACAC 58.653 45.455 0.00 0.00 0.00 3.67
6476 7429 2.423538 GCATCCATACAAAGGTGACACC 59.576 50.000 17.43 17.43 38.99 4.16
6477 7430 3.684908 CATCCATACAAAGGTGACACCA 58.315 45.455 26.30 5.69 41.95 4.17
6478 7431 3.134574 TCCATACAAAGGTGACACCAC 57.865 47.619 26.30 0.19 41.95 4.16
6521 7499 1.535896 TCTCGCTATCGACTGGTATGC 59.464 52.381 0.00 0.00 40.21 3.14
6529 7507 0.316772 CGACTGGTATGCCGACTACG 60.317 60.000 0.00 0.00 37.67 3.51
6530 7508 0.594284 GACTGGTATGCCGACTACGC 60.594 60.000 0.00 0.00 37.67 4.42
6531 7509 1.317431 ACTGGTATGCCGACTACGCA 61.317 55.000 0.00 0.00 37.67 5.24
6533 7511 0.462375 TGGTATGCCGACTACGCATT 59.538 50.000 0.00 0.00 37.42 3.56
6534 7512 1.134640 TGGTATGCCGACTACGCATTT 60.135 47.619 0.00 0.00 37.42 2.32
6535 7513 1.260561 GGTATGCCGACTACGCATTTG 59.739 52.381 0.00 0.00 37.42 2.32
6536 7514 1.260561 GTATGCCGACTACGCATTTGG 59.739 52.381 0.00 0.00 37.42 3.28
6537 7515 1.714899 ATGCCGACTACGCATTTGGC 61.715 55.000 0.00 0.00 42.76 4.52
6544 7541 2.227865 GACTACGCATTTGGCTTTTGGA 59.772 45.455 0.00 0.00 41.67 3.53
6579 7576 3.746045 AGCTCGTGTTTCCTACTTCAA 57.254 42.857 0.00 0.00 0.00 2.69
6580 7577 3.654414 AGCTCGTGTTTCCTACTTCAAG 58.346 45.455 0.00 0.00 0.00 3.02
6581 7578 2.737252 GCTCGTGTTTCCTACTTCAAGG 59.263 50.000 0.00 0.00 38.06 3.61
6607 7728 1.559682 TGGATAAGGTCTGGGAGCAAC 59.440 52.381 0.00 0.00 31.89 4.17
6646 7792 5.056894 ACAGTACACGAATAGACTTGGAC 57.943 43.478 0.00 0.00 0.00 4.02
6702 7853 2.007608 CATGTCATGCTCCACAGTCAG 58.992 52.381 0.00 0.00 0.00 3.51
6734 7885 2.091112 CAGTCAAGCCAGCTCGTCG 61.091 63.158 0.00 0.00 0.00 5.12
6750 7902 1.146041 TCGTCTTGCCACTGTGCTT 59.854 52.632 1.29 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.891992 ACCACAAGTCTACAACTAGCAT 57.108 40.909 0.00 0.00 37.17 3.79
60 411 0.995024 AATGGTGGCTGCCTAAGAGT 59.005 50.000 21.03 0.00 0.00 3.24
143 494 4.710197 ACCCCCAAAATTCCTAAATCCT 57.290 40.909 0.00 0.00 0.00 3.24
150 880 2.912295 CCATCAAACCCCCAAAATTCCT 59.088 45.455 0.00 0.00 0.00 3.36
205 935 2.167037 TTTGAGGGGTTGGGGGAGG 61.167 63.158 0.00 0.00 0.00 4.30
206 936 1.076727 GTTTGAGGGGTTGGGGGAG 59.923 63.158 0.00 0.00 0.00 4.30
207 937 2.475172 GGTTTGAGGGGTTGGGGGA 61.475 63.158 0.00 0.00 0.00 4.81
208 938 2.119611 GGTTTGAGGGGTTGGGGG 59.880 66.667 0.00 0.00 0.00 5.40
209 939 1.076727 GAGGTTTGAGGGGTTGGGG 59.923 63.158 0.00 0.00 0.00 4.96
210 940 0.409484 ATGAGGTTTGAGGGGTTGGG 59.591 55.000 0.00 0.00 0.00 4.12
251 981 2.406130 CGTCACGTAAGGCCTTGTTTA 58.594 47.619 28.77 4.66 46.39 2.01
304 1034 1.002257 AGATTGCATGCACCCACGA 60.002 52.632 22.58 4.62 0.00 4.35
357 1087 2.839486 ACATGTTTCAAGCCTCGAGA 57.161 45.000 15.71 0.00 0.00 4.04
358 1088 2.159787 CGAACATGTTTCAAGCCTCGAG 60.160 50.000 13.36 5.13 0.00 4.04
364 1094 1.606668 TGGTCCGAACATGTTTCAAGC 59.393 47.619 13.36 10.72 0.00 4.01
376 1106 0.250124 ATCACACGCTTTGGTCCGAA 60.250 50.000 0.00 0.00 0.00 4.30
415 1145 3.270877 CCAACCTTCGAAACCCTATCAG 58.729 50.000 0.00 0.00 0.00 2.90
418 1148 2.238898 CTCCCAACCTTCGAAACCCTAT 59.761 50.000 0.00 0.00 0.00 2.57
433 1190 1.734655 AGCCTGAAAGAGACTCCCAA 58.265 50.000 0.00 0.00 34.07 4.12
437 1194 4.500127 GAAACCTAGCCTGAAAGAGACTC 58.500 47.826 0.00 0.00 34.07 3.36
491 1249 1.703438 GCTTCCAGATCGTGCTGCTG 61.703 60.000 0.00 0.00 34.56 4.41
500 1258 4.458397 TCCTTCATCATTGCTTCCAGATC 58.542 43.478 0.00 0.00 0.00 2.75
535 1293 3.469899 GAGTCATCTCGATCATCCTCG 57.530 52.381 0.00 0.00 39.99 4.63
565 1323 2.779506 CCTTCTACGTTGCCTCCTTTT 58.220 47.619 0.00 0.00 0.00 2.27
566 1324 1.610886 GCCTTCTACGTTGCCTCCTTT 60.611 52.381 0.00 0.00 0.00 3.11
567 1325 0.036294 GCCTTCTACGTTGCCTCCTT 60.036 55.000 0.00 0.00 0.00 3.36
646 1407 4.976224 AAACCTTGTCTTGTACAACCAC 57.024 40.909 3.59 5.16 43.22 4.16
768 1529 5.123820 TCCGAACCTGATTCAAGCTAAAATG 59.876 40.000 0.00 0.00 37.12 2.32
783 1544 0.328258 ACCCTGGAATTCCGAACCTG 59.672 55.000 19.57 7.25 39.43 4.00
784 1545 1.073098 AACCCTGGAATTCCGAACCT 58.927 50.000 19.57 1.33 39.43 3.50
796 1557 4.461431 GGTCCAAAATACTTGTAACCCTGG 59.539 45.833 0.00 0.00 0.00 4.45
975 1781 4.293648 TGTGAGGGTGTCGCGGTG 62.294 66.667 6.13 0.00 38.67 4.94
977 1783 2.149803 TTACTGTGAGGGTGTCGCGG 62.150 60.000 6.13 0.00 46.20 6.46
978 1784 1.007336 GTTACTGTGAGGGTGTCGCG 61.007 60.000 0.00 0.00 38.67 5.87
979 1785 0.032952 TGTTACTGTGAGGGTGTCGC 59.967 55.000 0.00 0.00 36.09 5.19
980 1786 1.779569 GTGTTACTGTGAGGGTGTCG 58.220 55.000 0.00 0.00 0.00 4.35
981 1787 1.779569 CGTGTTACTGTGAGGGTGTC 58.220 55.000 0.00 0.00 0.00 3.67
983 1789 0.949105 GGCGTGTTACTGTGAGGGTG 60.949 60.000 0.00 0.00 0.00 4.61
1009 1857 6.504279 AGGGTTTTCTTGTAGAGGGATTAAGA 59.496 38.462 0.00 0.00 0.00 2.10
1026 1879 1.947456 GCGATGGGATGTAGGGTTTTC 59.053 52.381 0.00 0.00 0.00 2.29
1047 1901 3.339093 GTGGAGGGTGGAAGGGGG 61.339 72.222 0.00 0.00 0.00 5.40
1288 2146 4.295119 GTGACGGCGGTGTCCTGT 62.295 66.667 13.24 0.00 38.11 4.00
1714 2572 3.708220 GAAGAGCTGGCGGTCCTCG 62.708 68.421 0.00 0.00 38.41 4.63
1837 2695 1.197721 GTGAAAGCTGGTCGGACAATG 59.802 52.381 10.76 0.48 0.00 2.82
2200 3058 1.817941 CCCATCCGCAGGGTTAACG 60.818 63.158 0.00 0.00 39.56 3.18
2616 3474 9.829507 ACTCATCCTGTTAAAATATCTTGAGAG 57.170 33.333 0.00 0.00 33.05 3.20
2703 3566 5.220586 CGAATAAAGAAGCGCCATTGAACTA 60.221 40.000 2.29 0.00 0.00 2.24
2967 3831 6.550938 ACATGACAGTCTCCTTGATATCAA 57.449 37.500 17.07 17.07 0.00 2.57
3028 3892 7.364522 TGCAGTAAGAACAACATGAGATAAC 57.635 36.000 0.00 0.00 0.00 1.89
3182 4046 4.568359 ACAATACATTAGCTGAGCTGAACG 59.432 41.667 18.79 7.33 40.10 3.95
3236 4100 3.334583 TCAGAACCAGGGAATTTCTCG 57.665 47.619 0.00 0.00 0.00 4.04
3476 4340 2.893489 GTCTTCAACCCTCATGCCTTTT 59.107 45.455 0.00 0.00 0.00 2.27
3797 4661 2.166459 CCGATTAGTTGGAGCTGACTCA 59.834 50.000 0.00 0.00 45.42 3.41
3958 4822 6.907212 GCCTATTAAACTCATGATGAAACACG 59.093 38.462 0.00 0.00 0.00 4.49
3970 4834 8.902806 CCAGAATGTAATTGCCTATTAAACTCA 58.097 33.333 0.00 0.00 36.07 3.41
4036 4900 6.349777 CCGGCCTGACAAAGAAATTTATTACA 60.350 38.462 0.00 0.25 0.00 2.41
4710 5574 2.224942 TGAGACCGTTCTAGTGGGAAGA 60.225 50.000 3.98 0.00 29.47 2.87
5034 5898 3.476552 TGGTCCAAGAAGAATGTCACAC 58.523 45.455 0.00 0.00 0.00 3.82
5121 5985 1.078918 CTGTCCAGCGGCAATCTGA 60.079 57.895 1.45 0.00 33.54 3.27
5669 6545 3.256631 AGCAGCAGGTAAACAAAATCCTG 59.743 43.478 0.00 5.79 46.96 3.86
5680 6556 3.066342 GTGACTATCGTAGCAGCAGGTAA 59.934 47.826 0.00 0.00 0.00 2.85
5681 6557 2.617308 GTGACTATCGTAGCAGCAGGTA 59.383 50.000 0.00 0.00 0.00 3.08
5682 6558 1.405821 GTGACTATCGTAGCAGCAGGT 59.594 52.381 0.00 0.00 0.00 4.00
5683 6559 1.405463 TGTGACTATCGTAGCAGCAGG 59.595 52.381 0.00 0.00 0.00 4.85
5684 6560 2.455032 GTGTGACTATCGTAGCAGCAG 58.545 52.381 0.00 0.00 0.00 4.24
5685 6561 1.134367 GGTGTGACTATCGTAGCAGCA 59.866 52.381 0.00 0.00 0.00 4.41
5686 6562 1.405821 AGGTGTGACTATCGTAGCAGC 59.594 52.381 0.00 0.00 0.00 5.25
5687 6563 3.878103 AGTAGGTGTGACTATCGTAGCAG 59.122 47.826 0.00 0.00 0.00 4.24
5688 6564 3.626217 CAGTAGGTGTGACTATCGTAGCA 59.374 47.826 0.00 0.00 0.00 3.49
5689 6565 3.548415 GCAGTAGGTGTGACTATCGTAGC 60.548 52.174 0.00 0.00 0.00 3.58
5690 6566 3.626217 TGCAGTAGGTGTGACTATCGTAG 59.374 47.826 0.00 0.00 0.00 3.51
5691 6567 3.613030 TGCAGTAGGTGTGACTATCGTA 58.387 45.455 0.00 0.00 0.00 3.43
5692 6568 2.443416 TGCAGTAGGTGTGACTATCGT 58.557 47.619 0.00 0.00 0.00 3.73
5693 6569 3.375642 CATGCAGTAGGTGTGACTATCG 58.624 50.000 0.00 0.00 0.00 2.92
5694 6570 3.126831 GCATGCAGTAGGTGTGACTATC 58.873 50.000 14.21 0.00 0.00 2.08
5695 6571 2.481969 CGCATGCAGTAGGTGTGACTAT 60.482 50.000 19.57 0.00 0.00 2.12
5774 6672 5.865013 CACGGTAAAAATACAAATCCCCAAC 59.135 40.000 0.00 0.00 0.00 3.77
5873 6774 4.122776 GGATACAAGTACATGCTCCAGTG 58.877 47.826 12.85 0.00 0.00 3.66
6000 6907 2.301346 ACAAACTGCAAGAGAACCTGG 58.699 47.619 0.00 0.00 37.43 4.45
6044 6951 2.170397 TCCTCCAATATTCAAGCGCAGA 59.830 45.455 11.47 3.85 0.00 4.26
6057 6964 6.889198 TGAGACGATTAAATTCTCCTCCAAT 58.111 36.000 0.00 0.00 35.81 3.16
6101 7008 2.416547 AGAAAGATCATTTGCCGACACG 59.583 45.455 0.00 0.00 0.00 4.49
6118 7025 5.183522 ACTCGTGTAAAAACCCAAACAGAAA 59.816 36.000 0.00 0.00 0.00 2.52
6129 7036 4.281525 TGCCTGAAACTCGTGTAAAAAC 57.718 40.909 0.00 0.00 0.00 2.43
6135 7042 2.037772 AGAGATTGCCTGAAACTCGTGT 59.962 45.455 0.00 0.00 33.53 4.49
6136 7043 2.670414 GAGAGATTGCCTGAAACTCGTG 59.330 50.000 0.00 0.00 33.53 4.35
6137 7044 2.564947 AGAGAGATTGCCTGAAACTCGT 59.435 45.455 0.00 0.00 33.53 4.18
6138 7045 3.119173 AGAGAGAGATTGCCTGAAACTCG 60.119 47.826 0.00 0.00 33.53 4.18
6139 7046 4.160252 AGAGAGAGAGATTGCCTGAAACTC 59.840 45.833 0.00 0.00 0.00 3.01
6140 7047 4.095946 AGAGAGAGAGATTGCCTGAAACT 58.904 43.478 0.00 0.00 0.00 2.66
6141 7048 4.160252 AGAGAGAGAGAGATTGCCTGAAAC 59.840 45.833 0.00 0.00 0.00 2.78
6142 7049 4.352009 AGAGAGAGAGAGATTGCCTGAAA 58.648 43.478 0.00 0.00 0.00 2.69
6143 7050 3.953612 GAGAGAGAGAGAGATTGCCTGAA 59.046 47.826 0.00 0.00 0.00 3.02
6144 7051 3.202818 AGAGAGAGAGAGAGATTGCCTGA 59.797 47.826 0.00 0.00 0.00 3.86
6145 7052 3.559069 AGAGAGAGAGAGAGATTGCCTG 58.441 50.000 0.00 0.00 0.00 4.85
6146 7053 3.461085 AGAGAGAGAGAGAGAGATTGCCT 59.539 47.826 0.00 0.00 0.00 4.75
6147 7054 3.817647 GAGAGAGAGAGAGAGAGATTGCC 59.182 52.174 0.00 0.00 0.00 4.52
6148 7055 4.712476 AGAGAGAGAGAGAGAGAGATTGC 58.288 47.826 0.00 0.00 0.00 3.56
6149 7056 7.052873 AGAAAGAGAGAGAGAGAGAGAGATTG 58.947 42.308 0.00 0.00 0.00 2.67
6150 7057 7.205515 AGAAAGAGAGAGAGAGAGAGAGATT 57.794 40.000 0.00 0.00 0.00 2.40
6151 7058 6.821616 AGAAAGAGAGAGAGAGAGAGAGAT 57.178 41.667 0.00 0.00 0.00 2.75
6152 7059 6.627087 AAGAAAGAGAGAGAGAGAGAGAGA 57.373 41.667 0.00 0.00 0.00 3.10
6153 7060 7.693969 AAAAGAAAGAGAGAGAGAGAGAGAG 57.306 40.000 0.00 0.00 0.00 3.20
6206 7113 1.129251 CACATCACCATCTCAACGTGC 59.871 52.381 0.00 0.00 0.00 5.34
6221 7128 3.804325 CCGTCCTCACATAACATCACATC 59.196 47.826 0.00 0.00 0.00 3.06
6222 7129 3.432186 CCCGTCCTCACATAACATCACAT 60.432 47.826 0.00 0.00 0.00 3.21
6223 7130 2.093711 CCCGTCCTCACATAACATCACA 60.094 50.000 0.00 0.00 0.00 3.58
6224 7131 2.550978 CCCGTCCTCACATAACATCAC 58.449 52.381 0.00 0.00 0.00 3.06
6225 7132 1.484653 CCCCGTCCTCACATAACATCA 59.515 52.381 0.00 0.00 0.00 3.07
6226 7133 1.202651 CCCCCGTCCTCACATAACATC 60.203 57.143 0.00 0.00 0.00 3.06
6227 7134 0.837272 CCCCCGTCCTCACATAACAT 59.163 55.000 0.00 0.00 0.00 2.71
6228 7135 0.252330 TCCCCCGTCCTCACATAACA 60.252 55.000 0.00 0.00 0.00 2.41
6229 7136 0.177373 GTCCCCCGTCCTCACATAAC 59.823 60.000 0.00 0.00 0.00 1.89
6230 7137 0.252330 TGTCCCCCGTCCTCACATAA 60.252 55.000 0.00 0.00 0.00 1.90
6231 7138 0.686441 CTGTCCCCCGTCCTCACATA 60.686 60.000 0.00 0.00 0.00 2.29
6294 7205 1.697432 CACTCCACCTACACCCTTTGA 59.303 52.381 0.00 0.00 0.00 2.69
6354 7304 2.752939 CGCATGTGAATCCGCAGCA 61.753 57.895 0.00 0.00 36.09 4.41
6400 7353 3.381045 CGAGTGTGTGTGTCTTATGTGT 58.619 45.455 0.00 0.00 0.00 3.72
6401 7354 2.731451 CCGAGTGTGTGTGTCTTATGTG 59.269 50.000 0.00 0.00 0.00 3.21
6402 7355 2.626266 TCCGAGTGTGTGTGTCTTATGT 59.374 45.455 0.00 0.00 0.00 2.29
6403 7356 3.057526 TCTCCGAGTGTGTGTGTCTTATG 60.058 47.826 0.00 0.00 0.00 1.90
6404 7357 3.154710 TCTCCGAGTGTGTGTGTCTTAT 58.845 45.455 0.00 0.00 0.00 1.73
6405 7358 2.578786 TCTCCGAGTGTGTGTGTCTTA 58.421 47.619 0.00 0.00 0.00 2.10
6406 7359 1.399714 TCTCCGAGTGTGTGTGTCTT 58.600 50.000 0.00 0.00 0.00 3.01
6407 7360 1.621992 ATCTCCGAGTGTGTGTGTCT 58.378 50.000 0.00 0.00 0.00 3.41
6408 7361 2.747989 TCTATCTCCGAGTGTGTGTGTC 59.252 50.000 0.00 0.00 0.00 3.67
6431 7384 7.030165 GCTCCTTCTAATTTTCTAAGGCAAAC 58.970 38.462 0.00 0.00 38.70 2.93
6450 7403 3.266772 TCACCTTTGTATGGATGCTCCTT 59.733 43.478 4.21 1.10 37.46 3.36
6451 7404 2.846206 TCACCTTTGTATGGATGCTCCT 59.154 45.455 4.21 0.00 37.46 3.69
6452 7405 2.945668 GTCACCTTTGTATGGATGCTCC 59.054 50.000 0.00 0.00 36.96 4.70
6453 7406 3.375299 GTGTCACCTTTGTATGGATGCTC 59.625 47.826 0.00 0.00 0.00 4.26
6454 7407 3.347216 GTGTCACCTTTGTATGGATGCT 58.653 45.455 0.00 0.00 0.00 3.79
6455 7408 2.423538 GGTGTCACCTTTGTATGGATGC 59.576 50.000 15.22 0.00 34.73 3.91
6456 7409 3.440173 GTGGTGTCACCTTTGTATGGATG 59.560 47.826 22.56 0.00 39.58 3.51
6457 7410 3.686016 GTGGTGTCACCTTTGTATGGAT 58.314 45.455 22.56 0.00 39.58 3.41
6458 7411 3.134574 GTGGTGTCACCTTTGTATGGA 57.865 47.619 22.56 0.00 39.58 3.41
6469 7422 1.757682 TGTTCCTTTGGTGGTGTCAC 58.242 50.000 0.00 0.00 42.91 3.67
6470 7423 2.305928 CATGTTCCTTTGGTGGTGTCA 58.694 47.619 0.00 0.00 0.00 3.58
6471 7424 2.306847 ACATGTTCCTTTGGTGGTGTC 58.693 47.619 0.00 0.00 0.00 3.67
6472 7425 2.452600 ACATGTTCCTTTGGTGGTGT 57.547 45.000 0.00 0.00 0.00 4.16
6473 7426 3.817709 AAACATGTTCCTTTGGTGGTG 57.182 42.857 12.39 0.00 0.00 4.17
6474 7427 4.283212 CCATAAACATGTTCCTTTGGTGGT 59.717 41.667 12.39 0.00 0.00 4.16
6475 7428 4.526262 TCCATAAACATGTTCCTTTGGTGG 59.474 41.667 12.39 11.74 0.00 4.61
6476 7429 5.720371 TCCATAAACATGTTCCTTTGGTG 57.280 39.130 12.39 3.66 0.00 4.17
6477 7430 5.779771 ACATCCATAAACATGTTCCTTTGGT 59.220 36.000 12.39 2.95 28.27 3.67
6478 7431 6.153340 AGACATCCATAAACATGTTCCTTTGG 59.847 38.462 12.39 15.27 33.22 3.28
6479 7432 7.161773 AGACATCCATAAACATGTTCCTTTG 57.838 36.000 12.39 7.89 33.22 2.77
6480 7433 6.094048 CGAGACATCCATAAACATGTTCCTTT 59.906 38.462 12.39 0.00 33.22 3.11
6529 7507 2.145536 CCAGTTCCAAAAGCCAAATGC 58.854 47.619 0.00 0.00 41.71 3.56
6530 7508 3.749665 TCCAGTTCCAAAAGCCAAATG 57.250 42.857 0.00 0.00 0.00 2.32
6531 7509 3.711190 ACTTCCAGTTCCAAAAGCCAAAT 59.289 39.130 0.00 0.00 0.00 2.32
6533 7511 2.745968 ACTTCCAGTTCCAAAAGCCAA 58.254 42.857 0.00 0.00 0.00 4.52
6534 7512 2.452600 ACTTCCAGTTCCAAAAGCCA 57.547 45.000 0.00 0.00 0.00 4.75
6535 7513 2.229062 GCTACTTCCAGTTCCAAAAGCC 59.771 50.000 0.00 0.00 0.00 4.35
6536 7514 2.229062 GGCTACTTCCAGTTCCAAAAGC 59.771 50.000 0.00 0.00 0.00 3.51
6537 7515 3.486383 TGGCTACTTCCAGTTCCAAAAG 58.514 45.455 0.00 0.00 30.34 2.27
6544 7541 1.338200 CGAGCTTGGCTACTTCCAGTT 60.338 52.381 0.00 0.00 39.88 3.16
6579 7576 3.321950 CCAGACCTTATCCATCCTTCCT 58.678 50.000 0.00 0.00 0.00 3.36
6580 7577 2.373502 CCCAGACCTTATCCATCCTTCC 59.626 54.545 0.00 0.00 0.00 3.46
6581 7578 3.318313 TCCCAGACCTTATCCATCCTTC 58.682 50.000 0.00 0.00 0.00 3.46
6614 7735 0.666913 CGTGTACTGTAGATCGGGGG 59.333 60.000 0.00 0.00 0.00 5.40
6615 7736 1.671979 TCGTGTACTGTAGATCGGGG 58.328 55.000 0.00 0.00 0.00 5.73
6619 7740 7.012138 TCCAAGTCTATTCGTGTACTGTAGATC 59.988 40.741 0.00 0.00 0.00 2.75
6702 7853 5.157067 GGCTTGACTGCTATTTTGAACTTC 58.843 41.667 0.00 0.00 0.00 3.01
6734 7885 1.269257 GGAAAAGCACAGTGGCAAGAC 60.269 52.381 1.84 0.00 35.83 3.01
6774 7926 0.527565 CATTCCTCGTTTGGCTTGGG 59.472 55.000 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.