Multiple sequence alignment - TraesCS3D01G207300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G207300 chr3D 100.000 7778 0 0 1 7778 272501864 272509641 0.000000e+00 14364
1 TraesCS3D01G207300 chr3D 93.642 1510 64 7 3095 4576 230771329 230769824 0.000000e+00 2228
2 TraesCS3D01G207300 chr3D 87.165 709 58 7 2 708 511436898 511437575 0.000000e+00 774
3 TraesCS3D01G207300 chr3D 79.058 191 33 7 525 711 182220790 182220977 2.950000e-24 124
4 TraesCS3D01G207300 chr3B 94.341 6821 213 59 771 7528 361754779 361748069 0.000000e+00 10298
5 TraesCS3D01G207300 chr3B 85.093 483 50 5 2 484 764101383 764100923 2.540000e-129 473
6 TraesCS3D01G207300 chr3B 92.032 251 16 3 7529 7778 361740061 361739814 4.470000e-92 350
7 TraesCS3D01G207300 chr3B 89.300 243 24 2 467 707 764100623 764100381 3.530000e-78 303
8 TraesCS3D01G207300 chr3B 86.239 218 27 3 2758 2974 361752978 361752763 4.690000e-57 233
9 TraesCS3D01G207300 chr3B 81.735 219 28 4 2563 2770 361752768 361752551 1.040000e-38 172
10 TraesCS3D01G207300 chr2D 94.256 3308 133 22 3105 6355 106332701 106329394 0.000000e+00 5003
11 TraesCS3D01G207300 chr2D 94.095 3319 135 25 3093 6354 463079833 463076519 0.000000e+00 4987
12 TraesCS3D01G207300 chr2D 90.744 1156 61 13 3166 4285 511971554 511970409 0.000000e+00 1500
13 TraesCS3D01G207300 chr2D 84.964 685 89 5 2 680 334333347 334332671 0.000000e+00 682
14 TraesCS3D01G207300 chr2D 89.535 258 20 4 3119 3369 13133152 13132895 3.500000e-83 320
15 TraesCS3D01G207300 chr2D 98.773 163 2 0 3092 3254 264809627 264809465 2.750000e-74 291
16 TraesCS3D01G207300 chr3A 94.048 3310 138 16 3105 6355 217717331 217720640 0.000000e+00 4966
17 TraesCS3D01G207300 chr3A 93.176 762 23 13 3090 3824 308688522 308689281 0.000000e+00 1092
18 TraesCS3D01G207300 chr3A 85.237 718 82 11 1 707 657330972 657331676 0.000000e+00 717
19 TraesCS3D01G207300 chr3A 89.412 85 9 0 7638 7722 19478492 19478576 2.970000e-19 108
20 TraesCS3D01G207300 chr7A 93.848 3316 141 26 3104 6358 632597345 632600658 0.000000e+00 4935
21 TraesCS3D01G207300 chr7A 93.318 1766 83 15 3098 4832 167255694 167257455 0.000000e+00 2575
22 TraesCS3D01G207300 chr7A 93.324 1393 56 14 3101 4457 467853949 467855340 0.000000e+00 2023
23 TraesCS3D01G207300 chr7A 77.697 686 110 25 34 707 407137129 407137783 5.700000e-101 379
24 TraesCS3D01G207300 chr7A 87.500 88 11 0 7641 7728 28862859 28862772 1.380000e-17 102
25 TraesCS3D01G207300 chr2A 93.846 3315 141 27 3102 6354 216533011 216529698 0.000000e+00 4933
26 TraesCS3D01G207300 chr2A 93.848 2731 112 14 3111 5788 179283028 179280301 0.000000e+00 4061
27 TraesCS3D01G207300 chr2A 92.052 2403 109 23 3092 5440 177014478 177012104 0.000000e+00 3304
28 TraesCS3D01G207300 chr2A 90.167 1861 142 13 3118 4944 305237682 305235829 0.000000e+00 2385
29 TraesCS3D01G207300 chr2A 98.765 162 2 0 3093 3254 196122950 196122789 9.870000e-74 289
30 TraesCS3D01G207300 chr2A 88.542 96 9 2 7641 7735 704759555 704759649 1.770000e-21 115
31 TraesCS3D01G207300 chr5B 93.959 3294 138 21 3121 6354 452128526 452125234 0.000000e+00 4924
32 TraesCS3D01G207300 chr5B 83.590 713 91 7 3 708 147281701 147281008 0.000000e+00 645
33 TraesCS3D01G207300 chr5B 82.019 723 81 17 2 708 690087722 690088411 3.150000e-158 569
34 TraesCS3D01G207300 chr5B 80.663 181 31 4 533 710 595636515 595636336 3.790000e-28 137
35 TraesCS3D01G207300 chr5B 88.372 86 10 0 7640 7725 602247142 602247057 3.840000e-18 104
36 TraesCS3D01G207300 chr4B 93.805 3309 141 28 3108 6354 172474441 172477747 0.000000e+00 4916
37 TraesCS3D01G207300 chr4B 93.263 2360 106 15 3092 5400 69316971 69314614 0.000000e+00 3428
38 TraesCS3D01G207300 chr4B 81.304 230 28 8 496 712 5935425 5935652 1.040000e-38 172
39 TraesCS3D01G207300 chr4B 80.874 183 31 4 530 709 665366138 665366319 2.930000e-29 141
40 TraesCS3D01G207300 chr4B 78.610 187 33 6 525 707 415741117 415741300 4.930000e-22 117
41 TraesCS3D01G207300 chr1D 93.684 3325 143 26 3092 6354 493220723 493217404 0.000000e+00 4915
42 TraesCS3D01G207300 chr1D 92.113 1420 59 15 3093 4460 105954643 105956061 0.000000e+00 1953
43 TraesCS3D01G207300 chrUn 93.317 3322 158 19 3093 6354 17582084 17585401 0.000000e+00 4846
44 TraesCS3D01G207300 chrUn 92.384 1405 56 9 3093 4446 86972270 86973674 0.000000e+00 1954
45 TraesCS3D01G207300 chrUn 89.936 1242 72 10 3093 4282 356902589 356901349 0.000000e+00 1552
46 TraesCS3D01G207300 chrUn 91.019 746 39 9 3093 3812 83943908 83943165 0.000000e+00 981
47 TraesCS3D01G207300 chrUn 91.206 398 14 8 3093 3469 16265820 16265423 8.940000e-144 521
48 TraesCS3D01G207300 chrUn 91.206 398 14 8 3093 3469 16296958 16296561 8.940000e-144 521
49 TraesCS3D01G207300 chrUn 89.826 344 14 8 3093 3415 349855627 349855970 9.330000e-114 422
50 TraesCS3D01G207300 chrUn 97.484 159 4 0 3096 3254 11913553 11913395 9.940000e-69 272
51 TraesCS3D01G207300 chrUn 97.484 159 4 0 3093 3251 336162753 336162911 9.940000e-69 272
52 TraesCS3D01G207300 chrUn 87.831 189 18 5 523 708 265028742 265028556 4.730000e-52 217
53 TraesCS3D01G207300 chrUn 87.831 189 18 5 523 708 287936317 287936503 4.730000e-52 217
54 TraesCS3D01G207300 chrUn 77.895 190 35 6 525 710 349421893 349421707 2.290000e-20 111
55 TraesCS3D01G207300 chrUn 77.895 190 35 6 525 710 398599583 398599397 2.290000e-20 111
56 TraesCS3D01G207300 chrUn 77.540 187 35 6 525 707 438413244 438413427 1.070000e-18 106
57 TraesCS3D01G207300 chr4D 94.379 3149 136 20 3247 6354 323563275 323566423 0.000000e+00 4796
58 TraesCS3D01G207300 chr4D 93.442 3141 146 17 3093 6173 404560533 404557393 0.000000e+00 4604
59 TraesCS3D01G207300 chr4D 92.450 1510 62 13 3093 4551 313597761 313596253 0.000000e+00 2109
60 TraesCS3D01G207300 chr4D 97.531 162 4 0 3093 3254 43328600 43328439 2.140000e-70 278
61 TraesCS3D01G207300 chr4D 88.048 251 9 6 3093 3322 445089963 445090213 2.140000e-70 278
62 TraesCS3D01G207300 chr6A 94.476 2860 119 16 3535 6355 410903592 410906451 0.000000e+00 4370
63 TraesCS3D01G207300 chr6A 93.260 816 29 10 3092 3881 410901497 410902312 0.000000e+00 1179
64 TraesCS3D01G207300 chr6A 81.111 180 29 4 526 702 568155134 568155311 1.050000e-28 139
65 TraesCS3D01G207300 chr1A 93.467 2602 126 20 3095 5652 396445679 396448280 0.000000e+00 3823
66 TraesCS3D01G207300 chr1A 91.207 489 21 4 3083 3550 592884092 592884579 0.000000e+00 645
67 TraesCS3D01G207300 chr1A 90.490 347 12 5 3092 3417 108906927 108907273 9.270000e-119 438
68 TraesCS3D01G207300 chr1B 88.840 1819 171 21 3628 5426 273662069 273660263 0.000000e+00 2206
69 TraesCS3D01G207300 chr1B 91.782 1302 52 12 3093 4346 355408194 355406900 0.000000e+00 1760
70 TraesCS3D01G207300 chr1B 76.901 697 103 29 23 709 55357970 55357322 7.470000e-90 342
71 TraesCS3D01G207300 chr6D 92.769 1383 48 9 3093 4423 160204385 160205767 0.000000e+00 1953
72 TraesCS3D01G207300 chr6D 90.258 1242 71 19 3093 4284 10749718 10750959 0.000000e+00 1578
73 TraesCS3D01G207300 chr6D 85.400 1137 148 9 3370 4499 221214687 221215812 0.000000e+00 1164
74 TraesCS3D01G207300 chr6D 91.245 811 41 13 3084 3870 218395466 218396270 0.000000e+00 1077
75 TraesCS3D01G207300 chr6D 97.531 162 4 0 3093 3254 39376983 39376822 2.140000e-70 278
76 TraesCS3D01G207300 chr6D 86.339 183 20 5 532 710 448381106 448380925 2.210000e-45 195
77 TraesCS3D01G207300 chr6D 77.966 177 30 8 531 702 452636668 452636840 1.380000e-17 102
78 TraesCS3D01G207300 chr6D 77.966 177 30 8 531 702 452637627 452637799 1.380000e-17 102
79 TraesCS3D01G207300 chr6D 77.966 177 30 8 531 702 452638587 452638759 1.380000e-17 102
80 TraesCS3D01G207300 chr7B 92.975 968 54 7 3584 4543 190236033 190235072 0.000000e+00 1399
81 TraesCS3D01G207300 chr7B 92.397 605 23 9 3090 3671 451496432 451497036 0.000000e+00 841
82 TraesCS3D01G207300 chr7B 81.818 187 31 3 523 707 200903757 200903572 3.760000e-33 154
83 TraesCS3D01G207300 chr5D 91.248 537 24 10 3087 3601 67584785 67584250 0.000000e+00 710
84 TraesCS3D01G207300 chr5D 82.282 666 78 17 46 707 464138789 464138160 2.470000e-149 540
85 TraesCS3D01G207300 chr5D 90.685 365 13 7 3093 3436 152758243 152757879 4.250000e-127 466
86 TraesCS3D01G207300 chr5D 85.443 316 31 5 14 329 16119122 16119422 1.630000e-81 315
87 TraesCS3D01G207300 chr5D 90.698 86 8 0 7641 7726 388098089 388098004 1.770000e-21 115
88 TraesCS3D01G207300 chr6B 92.531 482 12 10 3091 3550 120649040 120648561 0.000000e+00 669
89 TraesCS3D01G207300 chr2B 82.077 491 53 9 227 710 66469737 66469275 3.400000e-103 387
90 TraesCS3D01G207300 chr2B 89.412 85 9 0 7641 7725 479585318 479585234 2.970000e-19 108
91 TraesCS3D01G207300 chr5A 81.195 452 57 14 1 444 81491538 81491107 9.670000e-89 339
92 TraesCS3D01G207300 chr5A 90.244 82 8 0 7641 7722 698751088 698751169 2.970000e-19 108
93 TraesCS3D01G207300 chr4A 76.979 682 100 17 31 707 614885173 614885802 3.480000e-88 337
94 TraesCS3D01G207300 chr4A 80.749 187 32 4 530 713 649170196 649170381 8.140000e-30 143
95 TraesCS3D01G207300 chr4A 93.182 88 6 0 7640 7727 578562628 578562715 6.330000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G207300 chr3D 272501864 272509641 7777 False 14364.000000 14364 100.000000 1 7778 1 chr3D.!!$F2 7777
1 TraesCS3D01G207300 chr3D 230769824 230771329 1505 True 2228.000000 2228 93.642000 3095 4576 1 chr3D.!!$R1 1481
2 TraesCS3D01G207300 chr3D 511436898 511437575 677 False 774.000000 774 87.165000 2 708 1 chr3D.!!$F3 706
3 TraesCS3D01G207300 chr3B 361748069 361754779 6710 True 3567.666667 10298 87.438333 771 7528 3 chr3B.!!$R2 6757
4 TraesCS3D01G207300 chr3B 764100381 764101383 1002 True 388.000000 473 87.196500 2 707 2 chr3B.!!$R3 705
5 TraesCS3D01G207300 chr2D 106329394 106332701 3307 True 5003.000000 5003 94.256000 3105 6355 1 chr2D.!!$R2 3250
6 TraesCS3D01G207300 chr2D 463076519 463079833 3314 True 4987.000000 4987 94.095000 3093 6354 1 chr2D.!!$R5 3261
7 TraesCS3D01G207300 chr2D 511970409 511971554 1145 True 1500.000000 1500 90.744000 3166 4285 1 chr2D.!!$R6 1119
8 TraesCS3D01G207300 chr2D 334332671 334333347 676 True 682.000000 682 84.964000 2 680 1 chr2D.!!$R4 678
9 TraesCS3D01G207300 chr3A 217717331 217720640 3309 False 4966.000000 4966 94.048000 3105 6355 1 chr3A.!!$F2 3250
10 TraesCS3D01G207300 chr3A 308688522 308689281 759 False 1092.000000 1092 93.176000 3090 3824 1 chr3A.!!$F3 734
11 TraesCS3D01G207300 chr3A 657330972 657331676 704 False 717.000000 717 85.237000 1 707 1 chr3A.!!$F4 706
12 TraesCS3D01G207300 chr7A 632597345 632600658 3313 False 4935.000000 4935 93.848000 3104 6358 1 chr7A.!!$F4 3254
13 TraesCS3D01G207300 chr7A 167255694 167257455 1761 False 2575.000000 2575 93.318000 3098 4832 1 chr7A.!!$F1 1734
14 TraesCS3D01G207300 chr7A 467853949 467855340 1391 False 2023.000000 2023 93.324000 3101 4457 1 chr7A.!!$F3 1356
15 TraesCS3D01G207300 chr7A 407137129 407137783 654 False 379.000000 379 77.697000 34 707 1 chr7A.!!$F2 673
16 TraesCS3D01G207300 chr2A 216529698 216533011 3313 True 4933.000000 4933 93.846000 3102 6354 1 chr2A.!!$R4 3252
17 TraesCS3D01G207300 chr2A 179280301 179283028 2727 True 4061.000000 4061 93.848000 3111 5788 1 chr2A.!!$R2 2677
18 TraesCS3D01G207300 chr2A 177012104 177014478 2374 True 3304.000000 3304 92.052000 3092 5440 1 chr2A.!!$R1 2348
19 TraesCS3D01G207300 chr2A 305235829 305237682 1853 True 2385.000000 2385 90.167000 3118 4944 1 chr2A.!!$R5 1826
20 TraesCS3D01G207300 chr5B 452125234 452128526 3292 True 4924.000000 4924 93.959000 3121 6354 1 chr5B.!!$R2 3233
21 TraesCS3D01G207300 chr5B 147281008 147281701 693 True 645.000000 645 83.590000 3 708 1 chr5B.!!$R1 705
22 TraesCS3D01G207300 chr5B 690087722 690088411 689 False 569.000000 569 82.019000 2 708 1 chr5B.!!$F1 706
23 TraesCS3D01G207300 chr4B 172474441 172477747 3306 False 4916.000000 4916 93.805000 3108 6354 1 chr4B.!!$F2 3246
24 TraesCS3D01G207300 chr4B 69314614 69316971 2357 True 3428.000000 3428 93.263000 3092 5400 1 chr4B.!!$R1 2308
25 TraesCS3D01G207300 chr1D 493217404 493220723 3319 True 4915.000000 4915 93.684000 3092 6354 1 chr1D.!!$R1 3262
26 TraesCS3D01G207300 chr1D 105954643 105956061 1418 False 1953.000000 1953 92.113000 3093 4460 1 chr1D.!!$F1 1367
27 TraesCS3D01G207300 chrUn 17582084 17585401 3317 False 4846.000000 4846 93.317000 3093 6354 1 chrUn.!!$F1 3261
28 TraesCS3D01G207300 chrUn 86972270 86973674 1404 False 1954.000000 1954 92.384000 3093 4446 1 chrUn.!!$F2 1353
29 TraesCS3D01G207300 chrUn 356901349 356902589 1240 True 1552.000000 1552 89.936000 3093 4282 1 chrUn.!!$R7 1189
30 TraesCS3D01G207300 chrUn 83943165 83943908 743 True 981.000000 981 91.019000 3093 3812 1 chrUn.!!$R4 719
31 TraesCS3D01G207300 chr4D 323563275 323566423 3148 False 4796.000000 4796 94.379000 3247 6354 1 chr4D.!!$F1 3107
32 TraesCS3D01G207300 chr4D 404557393 404560533 3140 True 4604.000000 4604 93.442000 3093 6173 1 chr4D.!!$R3 3080
33 TraesCS3D01G207300 chr4D 313596253 313597761 1508 True 2109.000000 2109 92.450000 3093 4551 1 chr4D.!!$R2 1458
34 TraesCS3D01G207300 chr6A 410901497 410906451 4954 False 2774.500000 4370 93.868000 3092 6355 2 chr6A.!!$F2 3263
35 TraesCS3D01G207300 chr1A 396445679 396448280 2601 False 3823.000000 3823 93.467000 3095 5652 1 chr1A.!!$F2 2557
36 TraesCS3D01G207300 chr1B 273660263 273662069 1806 True 2206.000000 2206 88.840000 3628 5426 1 chr1B.!!$R2 1798
37 TraesCS3D01G207300 chr1B 355406900 355408194 1294 True 1760.000000 1760 91.782000 3093 4346 1 chr1B.!!$R3 1253
38 TraesCS3D01G207300 chr1B 55357322 55357970 648 True 342.000000 342 76.901000 23 709 1 chr1B.!!$R1 686
39 TraesCS3D01G207300 chr6D 160204385 160205767 1382 False 1953.000000 1953 92.769000 3093 4423 1 chr6D.!!$F2 1330
40 TraesCS3D01G207300 chr6D 10749718 10750959 1241 False 1578.000000 1578 90.258000 3093 4284 1 chr6D.!!$F1 1191
41 TraesCS3D01G207300 chr6D 221214687 221215812 1125 False 1164.000000 1164 85.400000 3370 4499 1 chr6D.!!$F4 1129
42 TraesCS3D01G207300 chr6D 218395466 218396270 804 False 1077.000000 1077 91.245000 3084 3870 1 chr6D.!!$F3 786
43 TraesCS3D01G207300 chr7B 190235072 190236033 961 True 1399.000000 1399 92.975000 3584 4543 1 chr7B.!!$R1 959
44 TraesCS3D01G207300 chr7B 451496432 451497036 604 False 841.000000 841 92.397000 3090 3671 1 chr7B.!!$F1 581
45 TraesCS3D01G207300 chr5D 67584250 67584785 535 True 710.000000 710 91.248000 3087 3601 1 chr5D.!!$R1 514
46 TraesCS3D01G207300 chr5D 464138160 464138789 629 True 540.000000 540 82.282000 46 707 1 chr5D.!!$R4 661
47 TraesCS3D01G207300 chr4A 614885173 614885802 629 False 337.000000 337 76.979000 31 707 1 chr4A.!!$F2 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 1098 0.036022 AAGGCCTTGCAGACTGTCTC 59.964 55.0 19.73 4.02 0.00 3.36 F
734 1100 0.250467 GGCCTTGCAGACTGTCTCAA 60.250 55.0 7.49 13.34 0.00 3.02 F
766 1132 0.321475 GCCAGACTGCTGCTCTCTTT 60.321 55.0 0.00 0.00 40.91 2.52 F
816 1182 0.460311 GCTCTAGCCGCCTGTTCTTA 59.540 55.0 0.00 0.00 34.31 2.10 F
2826 3220 0.548510 GCCATTTCCTACAGCTCCCT 59.451 55.0 0.00 0.00 0.00 4.20 F
3562 3982 0.392461 AACACTCGGCGCCATACAAT 60.392 50.0 28.98 4.92 0.00 2.71 F
4019 6092 0.555769 AAGGGTTCAAAGCTGACCCA 59.444 50.0 22.55 0.00 41.66 4.51 F
5048 7161 0.461961 ATCTTCGCTTCTCCTTCCCG 59.538 55.0 0.00 0.00 0.00 5.14 F
5862 7983 0.250727 CTTCGCCTTTTGTCCCCTCA 60.251 55.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 2225 0.368227 GATCGCTGACAGCAGAAACG 59.632 55.000 26.32 9.62 45.17 3.60 R
2619 3005 0.395312 ATCCCGTCACGAAAGGTTGT 59.605 50.000 0.00 0.00 0.00 3.32 R
2761 3148 2.030007 AGGAATGGTCGTGCAAAACATG 60.030 45.455 1.86 0.00 36.55 3.21 R
2843 3237 4.280425 ACAATGACATGGCATGTACACAAA 59.720 37.500 31.48 14.03 45.03 2.83 R
4600 6699 0.109319 GTTTTGTGCGGCGAATCCAT 60.109 50.000 12.98 0.00 34.01 3.41 R
5048 7161 0.244178 GAGGAGTTCGGAGTGTCCAC 59.756 60.000 5.48 0.00 35.91 4.02 R
5159 7275 0.741221 GTAGCTCAGGCGTTCAAGGG 60.741 60.000 0.00 0.00 44.37 3.95 R
6639 8771 0.108424 GTGCTTCCTCTGCATCGACT 60.108 55.000 0.00 0.00 42.69 4.18 R
7529 9669 0.243636 CAATCCAAAACCGGGACAGC 59.756 55.000 6.32 0.00 37.23 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.452627 ACTTGGCTATGTCTTCCTCGAAT 59.547 43.478 0.00 0.00 0.00 3.34
69 70 4.862018 GCTATGTCTTCCTCGAATATCTGC 59.138 45.833 0.00 0.00 0.00 4.26
92 105 3.003394 TCTCGGCAATTGAACCATGAT 57.997 42.857 10.34 0.00 0.00 2.45
101 121 1.567357 TGAACCATGATCCGACCTGA 58.433 50.000 0.00 0.00 0.00 3.86
126 146 1.602323 GGAACCATGGTGGCGACAA 60.602 57.895 20.60 0.00 46.06 3.18
225 253 4.077108 AGCAATTCTTCATCAGTTGCAGA 58.923 39.130 10.50 0.00 45.54 4.26
299 327 7.517734 GCATTTGAAGCTATAATTTGTGGCATG 60.518 37.037 4.44 0.00 0.00 4.06
314 342 1.479323 GGCATGTGAGAGGTACGGTTA 59.521 52.381 0.00 0.00 0.00 2.85
340 368 1.267806 GCGGAAGATATAACGACGGGA 59.732 52.381 0.00 0.00 0.00 5.14
371 404 0.394565 AGCATAGGGAAGATGACCGC 59.605 55.000 0.00 0.00 0.00 5.68
374 407 1.138859 CATAGGGAAGATGACCGCACA 59.861 52.381 0.00 0.00 0.00 4.57
481 842 2.360165 GGTCTAGCCCATGCATGAAAAG 59.640 50.000 28.31 17.67 41.13 2.27
595 959 4.002316 TGCATCAAAACATGATCAGACGA 58.998 39.130 0.00 0.00 45.91 4.20
600 965 4.637091 TCAAAACATGATCAGACGATGCAT 59.363 37.500 0.00 0.00 31.50 3.96
605 970 4.038402 ACATGATCAGACGATGCATACTCA 59.962 41.667 0.00 0.00 29.66 3.41
608 973 3.375782 TCAGACGATGCATACTCATGG 57.624 47.619 0.00 0.00 32.36 3.66
611 976 2.036475 AGACGATGCATACTCATGGACC 59.964 50.000 0.00 0.00 35.07 4.46
618 983 3.711190 TGCATACTCATGGACCATACTGT 59.289 43.478 6.67 8.77 32.36 3.55
639 1005 7.497595 ACTGTATCAACGGCTATAGAAATTCA 58.502 34.615 3.21 0.00 35.17 2.57
648 1014 6.016527 ACGGCTATAGAAATTCAGATGACGTA 60.017 38.462 3.21 0.00 0.00 3.57
705 1071 7.266905 GGGTGCCCCTATTTAGATATAAAGA 57.733 40.000 3.16 0.00 41.34 2.52
706 1072 7.873195 GGGTGCCCCTATTTAGATATAAAGAT 58.127 38.462 3.16 0.00 41.34 2.40
725 1091 7.480760 AAAGATTAATAAAAGGCCTTGCAGA 57.519 32.000 21.33 4.97 0.00 4.26
726 1092 6.456795 AGATTAATAAAAGGCCTTGCAGAC 57.543 37.500 21.33 6.41 0.00 3.51
727 1093 6.190587 AGATTAATAAAAGGCCTTGCAGACT 58.809 36.000 21.33 8.60 0.00 3.24
728 1094 5.643379 TTAATAAAAGGCCTTGCAGACTG 57.357 39.130 21.33 0.00 0.00 3.51
729 1095 2.656947 TAAAAGGCCTTGCAGACTGT 57.343 45.000 21.33 0.00 0.00 3.55
730 1096 1.322442 AAAAGGCCTTGCAGACTGTC 58.678 50.000 21.33 0.00 0.00 3.51
731 1097 0.475906 AAAGGCCTTGCAGACTGTCT 59.524 50.000 21.33 4.06 0.00 3.41
732 1098 0.036022 AAGGCCTTGCAGACTGTCTC 59.964 55.000 19.73 4.02 0.00 3.36
733 1099 1.123861 AGGCCTTGCAGACTGTCTCA 61.124 55.000 7.49 6.60 0.00 3.27
734 1100 0.250467 GGCCTTGCAGACTGTCTCAA 60.250 55.000 7.49 13.34 0.00 3.02
735 1101 1.597742 GCCTTGCAGACTGTCTCAAA 58.402 50.000 7.49 4.57 0.00 2.69
736 1102 1.949525 GCCTTGCAGACTGTCTCAAAA 59.050 47.619 7.49 2.10 0.00 2.44
737 1103 2.358898 GCCTTGCAGACTGTCTCAAAAA 59.641 45.455 7.49 0.00 0.00 1.94
757 1123 2.875094 AAAAGATGAGCCAGACTGCT 57.125 45.000 0.00 0.00 46.37 4.24
758 1124 2.110901 AAAGATGAGCCAGACTGCTG 57.889 50.000 0.00 0.00 42.95 4.41
759 1125 0.392729 AAGATGAGCCAGACTGCTGC 60.393 55.000 0.00 0.00 42.95 5.25
760 1126 1.221293 GATGAGCCAGACTGCTGCT 59.779 57.895 5.97 5.97 42.95 4.24
761 1127 0.810823 GATGAGCCAGACTGCTGCTC 60.811 60.000 20.64 20.64 42.95 4.26
762 1128 1.266160 ATGAGCCAGACTGCTGCTCT 61.266 55.000 24.94 13.64 42.95 4.09
763 1129 1.153588 GAGCCAGACTGCTGCTCTC 60.154 63.158 20.33 8.16 42.95 3.20
764 1130 1.606885 GAGCCAGACTGCTGCTCTCT 61.607 60.000 20.33 0.00 42.95 3.10
765 1131 1.193462 AGCCAGACTGCTGCTCTCTT 61.193 55.000 0.00 0.00 40.90 2.85
766 1132 0.321475 GCCAGACTGCTGCTCTCTTT 60.321 55.000 0.00 0.00 40.91 2.52
767 1133 1.881498 GCCAGACTGCTGCTCTCTTTT 60.881 52.381 0.00 0.00 40.91 2.27
768 1134 2.502295 CCAGACTGCTGCTCTCTTTTT 58.498 47.619 0.00 0.00 40.91 1.94
814 1180 1.954362 CTGCTCTAGCCGCCTGTTCT 61.954 60.000 0.00 0.00 41.18 3.01
815 1181 1.219393 GCTCTAGCCGCCTGTTCTT 59.781 57.895 0.00 0.00 34.31 2.52
816 1182 0.460311 GCTCTAGCCGCCTGTTCTTA 59.540 55.000 0.00 0.00 34.31 2.10
888 1254 2.743060 CAAAAGCCTTGCCCACCC 59.257 61.111 0.00 0.00 0.00 4.61
938 1304 1.082104 GCTCCTCGTTTTGTTGCGG 60.082 57.895 0.00 0.00 0.00 5.69
1056 1423 2.688958 CGACGAGGAGACCCTAGATTTT 59.311 50.000 0.00 0.00 44.53 1.82
1215 1582 3.742983 CGGGAGGAGTAAGAACAGC 57.257 57.895 0.00 0.00 0.00 4.40
1248 1615 3.077907 CCACCCACCAAGATCGGT 58.922 61.111 0.00 0.00 41.07 4.69
1324 1691 6.685828 GCCCGAGACGAAATTAGAAAATTAAC 59.314 38.462 0.00 0.00 34.12 2.01
1356 1723 8.898761 TGTATATACCACCTGCTATTTGTTTTG 58.101 33.333 10.38 0.00 0.00 2.44
1434 1810 4.989279 ATGGTTTTGATCATCCTTTCGG 57.011 40.909 0.00 0.00 0.00 4.30
1494 1870 1.229428 AATGCTCACACCGTGTTGAG 58.771 50.000 18.94 18.94 34.79 3.02
1518 1903 0.655733 ACGGCGCAATTGCACTATAC 59.344 50.000 28.77 10.87 42.21 1.47
1530 1915 2.732500 TGCACTATACGGTCAACAAACG 59.267 45.455 0.00 0.00 0.00 3.60
1538 1923 2.094099 ACGGTCAACAAACGTTGTACAC 59.906 45.455 0.00 3.12 44.59 2.90
1645 2030 5.872617 TGTCTTGTAATCCAATACTCCAACG 59.127 40.000 0.00 0.00 32.80 4.10
1651 2036 2.422597 TCCAATACTCCAACGCTTGTG 58.577 47.619 0.00 0.00 0.00 3.33
1840 2225 1.397390 ATGCTATTGGCTGCCTTGGC 61.397 55.000 21.03 19.57 42.39 4.52
1864 2249 0.997932 CTGCTGTCAGCGATCTTGTC 59.002 55.000 19.68 0.00 46.26 3.18
1921 2306 8.738645 ATGTAAGGAGGTTCAGTTTATCAATC 57.261 34.615 0.00 0.00 0.00 2.67
2157 2542 3.056322 GCCTTGATTCTTTGCAGTTCCAT 60.056 43.478 0.00 0.00 0.00 3.41
2158 2543 4.562143 GCCTTGATTCTTTGCAGTTCCATT 60.562 41.667 0.00 0.00 0.00 3.16
2300 2686 5.123820 TGTGCCTTGTATAATTCTTGCTGTC 59.876 40.000 0.00 0.00 0.00 3.51
2418 2804 1.961277 GAAGTGTGGTGGGCAGACG 60.961 63.158 0.00 0.00 0.00 4.18
2548 2934 7.934120 AGCTTGAGGTAAGATATTTATGTGACC 59.066 37.037 0.00 0.00 38.76 4.02
2607 2993 8.257306 TCATGTATGACTGTTTAGTGCAATAGA 58.743 33.333 0.00 0.00 37.25 1.98
2619 3005 8.726988 GTTTAGTGCAATAGACATTTCCTACAA 58.273 33.333 9.70 0.00 0.00 2.41
2630 3016 4.885325 ACATTTCCTACAACAACCTTTCGT 59.115 37.500 0.00 0.00 0.00 3.85
2635 3021 1.011333 ACAACAACCTTTCGTGACGG 58.989 50.000 4.70 0.00 0.00 4.79
2761 3148 8.596380 GTGAACTAGTATTAACAGAATGAGTGC 58.404 37.037 0.00 0.00 39.69 4.40
2820 3214 4.202441 AGTGCAATAGCCATTTCCTACAG 58.798 43.478 0.00 0.00 41.13 2.74
2826 3220 0.548510 GCCATTTCCTACAGCTCCCT 59.451 55.000 0.00 0.00 0.00 4.20
2882 3277 2.582728 TTGTCACAAAAAGCAGGCAG 57.417 45.000 0.00 0.00 0.00 4.85
2933 3328 7.336931 GGTTAATTTTGAGTCTAGATGAGCCAA 59.663 37.037 0.00 0.00 0.00 4.52
2980 3375 3.599343 TGAGTGGATCCTTTGTGATTCG 58.401 45.455 14.23 0.00 0.00 3.34
2982 3377 4.221924 TGAGTGGATCCTTTGTGATTCGTA 59.778 41.667 14.23 0.00 0.00 3.43
3253 3668 4.832248 TGTCCATAGCTAGTTCTTTGGTG 58.168 43.478 8.33 0.00 36.79 4.17
3420 3838 4.853007 AGCTTCTCTTCAATTGGTGCTAT 58.147 39.130 5.42 0.00 0.00 2.97
3512 3932 2.821366 GCATCTCCGCCACACCTG 60.821 66.667 0.00 0.00 0.00 4.00
3520 3940 1.523711 CGCCACACCTGACTGTTGT 60.524 57.895 0.00 0.00 0.00 3.32
3562 3982 0.392461 AACACTCGGCGCCATACAAT 60.392 50.000 28.98 4.92 0.00 2.71
3593 5644 1.466025 AACCGCCGTCCTGTAGAACA 61.466 55.000 0.00 0.00 0.00 3.18
3684 5737 3.492313 GCTTTGATTCGATGGTTCACAC 58.508 45.455 0.00 0.00 0.00 3.82
3862 5924 4.376225 ACCCTTTCGATTCCAAGGTTTA 57.624 40.909 11.68 0.00 38.37 2.01
4019 6092 0.555769 AAGGGTTCAAAGCTGACCCA 59.444 50.000 22.55 0.00 41.66 4.51
4104 6199 5.523916 CCTTGATGAGGGTAATGTACTTTCG 59.476 44.000 0.00 0.00 42.26 3.46
4177 6272 3.121929 TCATAGGCCTTCTCCAAGTCT 57.878 47.619 12.58 0.00 0.00 3.24
4467 6566 4.457433 GCATCTTGTTTGCCTGAAAAAC 57.543 40.909 0.00 0.00 37.90 2.43
4600 6699 2.180276 GCCTCCTTGACCTTAGACTCA 58.820 52.381 0.00 0.00 0.00 3.41
4627 6726 1.208870 CCGCACAAAACGCATGCTA 59.791 52.632 17.13 0.00 37.20 3.49
4694 6793 1.269448 CCCCATTGAACAACTTGTCGG 59.731 52.381 0.00 0.00 0.00 4.79
4718 6817 1.620819 ACTCCCGCCATCTATGCTTAG 59.379 52.381 0.14 0.14 0.00 2.18
4726 6825 4.321527 CGCCATCTATGCTTAGTCTCATCA 60.322 45.833 6.53 0.00 0.00 3.07
4876 6979 1.202830 AGAGGTCCTCATACGCTCGAT 60.203 52.381 21.26 0.00 32.06 3.59
4944 7047 5.984695 TGTACTTCTCTATGTTGTCTGCT 57.015 39.130 0.00 0.00 0.00 4.24
4965 7078 4.345854 CTCCTATCCAGGTATAGGTGTCC 58.654 52.174 17.88 0.00 45.98 4.02
4981 7094 4.887655 AGGTGTCCGAAACAATCTTTCTTT 59.112 37.500 0.00 0.00 40.31 2.52
5048 7161 0.461961 ATCTTCGCTTCTCCTTCCCG 59.538 55.000 0.00 0.00 0.00 5.14
5059 7172 2.261671 CTTCCCGTGGACACTCCG 59.738 66.667 0.56 0.00 40.17 4.63
5126 7242 0.680921 CACATTGTCCGCATCCCCTT 60.681 55.000 0.00 0.00 0.00 3.95
5159 7275 1.133761 GGCCCTCCTTAATGACCCTTC 60.134 57.143 0.00 0.00 0.00 3.46
5216 7332 1.068472 ACCACTTCGTTCTAGCGACTG 60.068 52.381 0.00 0.00 40.85 3.51
5230 7346 0.458543 CGACTGTGGCACGCTTATCT 60.459 55.000 13.77 0.00 40.97 1.98
5295 7411 0.969149 TGCTGAGGTACACCACTCTG 59.031 55.000 0.38 0.00 38.89 3.35
5298 7414 2.520069 CTGAGGTACACCACTCTGTCT 58.480 52.381 0.38 0.00 38.89 3.41
5452 7568 3.735237 ACAATCATGTCGTAGGCTAGG 57.265 47.619 7.90 7.90 33.41 3.02
5620 7737 1.005215 CCATGTCTTCCAAGCCTTCCT 59.995 52.381 0.00 0.00 0.00 3.36
5862 7983 0.250727 CTTCGCCTTTTGTCCCCTCA 60.251 55.000 0.00 0.00 0.00 3.86
5891 8012 2.398588 TCCTGGACGCAAAGGATATCT 58.601 47.619 2.05 0.00 37.68 1.98
6010 8131 1.275291 CTTCCTTACCCTTCGCACTCA 59.725 52.381 0.00 0.00 0.00 3.41
6141 8262 2.715532 ATCAAGATACGGCGCGCCAT 62.716 55.000 45.26 37.21 35.37 4.40
6249 8378 6.816136 ACGAAAATCTTTTGGGTTTCATCTT 58.184 32.000 0.00 0.00 31.27 2.40
6305 8437 1.008938 AGCCTATCACAACCCTCCTCT 59.991 52.381 0.00 0.00 0.00 3.69
6307 8439 2.420687 GCCTATCACAACCCTCCTCTTG 60.421 54.545 0.00 0.00 0.00 3.02
6312 8444 0.974383 ACAACCCTCCTCTTGTACCG 59.026 55.000 0.00 0.00 0.00 4.02
6365 8497 1.130561 GGCGGAGTTTGTGCTACATTC 59.869 52.381 0.00 0.00 0.00 2.67
6366 8498 1.130561 GCGGAGTTTGTGCTACATTCC 59.869 52.381 0.00 0.00 0.00 3.01
6479 8611 2.038033 TGGTCTTTGCTACCACTACCAC 59.962 50.000 0.00 0.00 42.10 4.16
6590 8722 1.654954 GATGCAAGCTCACAGGGCAG 61.655 60.000 0.00 0.00 37.96 4.85
6593 8725 3.946201 AAGCTCACAGGGCAGCGT 61.946 61.111 0.00 0.00 40.84 5.07
6639 8771 2.840038 ACATGATGACCCTGAGCACTTA 59.160 45.455 0.00 0.00 0.00 2.24
6741 8873 7.701078 CCTGTTGCTTATGATGATCTTTTTGAG 59.299 37.037 0.00 0.00 0.00 3.02
6756 8888 6.644347 TCTTTTTGAGGATGGAGAGATACAC 58.356 40.000 0.00 0.00 0.00 2.90
6844 8976 0.461961 GAGGGAAGAGGGTCGATGTG 59.538 60.000 0.00 0.00 0.00 3.21
6853 8985 3.706594 AGAGGGTCGATGTGTGTATGAAT 59.293 43.478 0.00 0.00 0.00 2.57
6919 9051 3.438087 CCCTTGTGTGATTGAGCAGTAAG 59.562 47.826 0.00 0.00 0.00 2.34
6921 9053 4.516698 CCTTGTGTGATTGAGCAGTAAGTT 59.483 41.667 0.00 0.00 0.00 2.66
7000 9132 8.050778 ACGAACAATATTGAGCCTAAATTCAA 57.949 30.769 22.16 0.00 37.68 2.69
7035 9167 6.877611 AACTATGGTTTTACAACTGTCCAG 57.122 37.500 0.00 0.00 32.90 3.86
7036 9168 5.937111 ACTATGGTTTTACAACTGTCCAGT 58.063 37.500 0.00 0.00 44.94 4.00
7037 9169 6.831868 AACTATGGTTTTACAACTGTCCAGTT 59.168 34.615 6.85 6.85 41.38 3.16
7038 9170 7.012989 AACTATGGTTTTACAACTGTCCAGTTC 59.987 37.037 9.65 0.00 39.93 3.01
7052 9184 6.431234 ACTGTCCAGTTCATTTTAAGGATGTC 59.569 38.462 0.00 0.00 38.83 3.06
7136 9268 1.134610 GGTCGTTGGTCCAATATCGGT 60.135 52.381 7.77 0.00 0.00 4.69
7199 9331 4.982241 AAGTGAGGTCCTGATTTGAAGA 57.018 40.909 0.00 0.00 0.00 2.87
7203 9335 5.013495 AGTGAGGTCCTGATTTGAAGATTGA 59.987 40.000 0.00 0.00 0.00 2.57
7269 9401 7.329471 GTCTTGAATTTGGCTAAATTTCTGGAC 59.671 37.037 20.12 19.00 44.35 4.02
7293 9425 3.877508 AGCCATTTCACCGCTAATCTTAC 59.122 43.478 0.00 0.00 0.00 2.34
7341 9473 7.011669 TCGTAGGAAGTTTGTAGGTTTGAAAAG 59.988 37.037 0.00 0.00 0.00 2.27
7342 9474 5.902681 AGGAAGTTTGTAGGTTTGAAAAGC 58.097 37.500 0.00 0.00 36.69 3.51
7344 9476 6.154534 AGGAAGTTTGTAGGTTTGAAAAGCTT 59.845 34.615 12.28 0.00 43.61 3.74
7345 9477 6.255670 GGAAGTTTGTAGGTTTGAAAAGCTTG 59.744 38.462 12.28 0.00 43.61 4.01
7346 9478 5.660460 AGTTTGTAGGTTTGAAAAGCTTGG 58.340 37.500 12.28 0.00 43.61 3.61
7399 9531 6.870971 TTTAGGATTAAATCATACGGCCAC 57.129 37.500 2.24 0.00 0.00 5.01
7400 9532 4.431416 AGGATTAAATCATACGGCCACA 57.569 40.909 2.24 0.00 0.00 4.17
7402 9534 3.059188 GGATTAAATCATACGGCCACACG 60.059 47.826 2.24 0.00 40.31 4.49
7426 9560 2.127003 GCTGCGCCCGTAAACAAC 60.127 61.111 4.18 0.00 0.00 3.32
7446 9580 2.287608 ACGATGAAGAATCTATCGCGCA 60.288 45.455 13.51 0.00 45.43 6.09
7447 9581 2.726241 CGATGAAGAATCTATCGCGCAA 59.274 45.455 8.75 0.00 37.49 4.85
7448 9582 3.182372 CGATGAAGAATCTATCGCGCAAA 59.818 43.478 8.75 0.00 37.49 3.68
7449 9583 4.318050 CGATGAAGAATCTATCGCGCAAAA 60.318 41.667 8.75 0.00 37.49 2.44
7450 9584 4.937696 TGAAGAATCTATCGCGCAAAAA 57.062 36.364 8.75 0.00 0.00 1.94
7451 9585 5.484173 TGAAGAATCTATCGCGCAAAAAT 57.516 34.783 8.75 0.00 0.00 1.82
7456 9590 8.856490 AAGAATCTATCGCGCAAAAATAAAAT 57.144 26.923 8.75 0.00 0.00 1.82
7457 9591 8.856490 AGAATCTATCGCGCAAAAATAAAATT 57.144 26.923 8.75 2.87 0.00 1.82
7479 9619 5.837770 TGATGAAGAATCAGATATGCCCT 57.162 39.130 0.00 0.00 40.50 5.19
7505 9645 2.897969 ACGTGGACTTCAACCTATGTCT 59.102 45.455 0.00 0.00 0.00 3.41
7541 9681 2.668550 GCTTCGCTGTCCCGGTTT 60.669 61.111 0.00 0.00 0.00 3.27
7542 9682 2.258726 GCTTCGCTGTCCCGGTTTT 61.259 57.895 0.00 0.00 0.00 2.43
7543 9683 1.574428 CTTCGCTGTCCCGGTTTTG 59.426 57.895 0.00 0.00 0.00 2.44
7544 9684 1.852067 CTTCGCTGTCCCGGTTTTGG 61.852 60.000 0.00 0.00 0.00 3.28
7545 9685 2.281208 CGCTGTCCCGGTTTTGGA 60.281 61.111 0.00 0.00 0.00 3.53
7546 9686 1.674322 CGCTGTCCCGGTTTTGGAT 60.674 57.895 0.00 0.00 33.65 3.41
7547 9687 1.241315 CGCTGTCCCGGTTTTGGATT 61.241 55.000 0.00 0.00 33.65 3.01
7548 9688 0.243636 GCTGTCCCGGTTTTGGATTG 59.756 55.000 0.00 0.00 33.65 2.67
7549 9689 1.616159 CTGTCCCGGTTTTGGATTGT 58.384 50.000 0.00 0.00 33.65 2.71
7550 9690 1.539827 CTGTCCCGGTTTTGGATTGTC 59.460 52.381 0.00 0.00 33.65 3.18
7551 9691 1.133761 TGTCCCGGTTTTGGATTGTCA 60.134 47.619 0.00 0.00 33.65 3.58
7552 9692 2.167662 GTCCCGGTTTTGGATTGTCAT 58.832 47.619 0.00 0.00 33.65 3.06
7553 9693 2.094752 GTCCCGGTTTTGGATTGTCATG 60.095 50.000 0.00 0.00 33.65 3.07
7554 9694 1.892474 CCCGGTTTTGGATTGTCATGT 59.108 47.619 0.00 0.00 0.00 3.21
7555 9695 2.298729 CCCGGTTTTGGATTGTCATGTT 59.701 45.455 0.00 0.00 0.00 2.71
7556 9696 3.316283 CCGGTTTTGGATTGTCATGTTG 58.684 45.455 0.00 0.00 0.00 3.33
7557 9697 3.243704 CCGGTTTTGGATTGTCATGTTGT 60.244 43.478 0.00 0.00 0.00 3.32
7558 9698 4.022762 CCGGTTTTGGATTGTCATGTTGTA 60.023 41.667 0.00 0.00 0.00 2.41
7559 9699 5.336372 CCGGTTTTGGATTGTCATGTTGTAT 60.336 40.000 0.00 0.00 0.00 2.29
7560 9700 6.127869 CCGGTTTTGGATTGTCATGTTGTATA 60.128 38.462 0.00 0.00 0.00 1.47
7561 9701 6.966632 CGGTTTTGGATTGTCATGTTGTATAG 59.033 38.462 0.00 0.00 0.00 1.31
7562 9702 7.361713 CGGTTTTGGATTGTCATGTTGTATAGT 60.362 37.037 0.00 0.00 0.00 2.12
7563 9703 8.303876 GGTTTTGGATTGTCATGTTGTATAGTT 58.696 33.333 0.00 0.00 0.00 2.24
7564 9704 9.691362 GTTTTGGATTGTCATGTTGTATAGTTT 57.309 29.630 0.00 0.00 0.00 2.66
7599 9739 3.467374 AAATGACCGGCACAAAATTGT 57.533 38.095 0.00 0.00 43.36 2.71
7600 9740 2.723124 ATGACCGGCACAAAATTGTC 57.277 45.000 0.00 0.00 39.91 3.18
7601 9741 1.393603 TGACCGGCACAAAATTGTCA 58.606 45.000 0.00 0.00 39.91 3.58
7602 9742 1.959985 TGACCGGCACAAAATTGTCAT 59.040 42.857 0.00 0.00 39.91 3.06
7603 9743 2.288091 TGACCGGCACAAAATTGTCATG 60.288 45.455 0.00 0.00 39.91 3.07
7604 9744 1.959985 ACCGGCACAAAATTGTCATGA 59.040 42.857 0.00 0.00 39.91 3.07
7605 9745 2.562298 ACCGGCACAAAATTGTCATGAT 59.438 40.909 0.00 0.00 39.91 2.45
7606 9746 3.761218 ACCGGCACAAAATTGTCATGATA 59.239 39.130 0.00 0.00 39.91 2.15
7607 9747 4.402155 ACCGGCACAAAATTGTCATGATAT 59.598 37.500 0.00 0.00 39.91 1.63
7608 9748 4.741185 CCGGCACAAAATTGTCATGATATG 59.259 41.667 0.00 0.00 39.91 1.78
7609 9749 4.207635 CGGCACAAAATTGTCATGATATGC 59.792 41.667 0.00 1.59 39.91 3.14
7610 9750 5.110598 GGCACAAAATTGTCATGATATGCA 58.889 37.500 13.29 0.00 39.91 3.96
7611 9751 5.233476 GGCACAAAATTGTCATGATATGCAG 59.767 40.000 13.29 0.00 39.91 4.41
7612 9752 5.276678 GCACAAAATTGTCATGATATGCAGC 60.277 40.000 0.00 0.00 39.91 5.25
7613 9753 5.038683 ACAAAATTGTCATGATATGCAGCG 58.961 37.500 0.00 0.00 36.50 5.18
7614 9754 5.163632 ACAAAATTGTCATGATATGCAGCGA 60.164 36.000 0.00 0.00 36.50 4.93
7615 9755 5.503662 AAATTGTCATGATATGCAGCGAA 57.496 34.783 0.00 0.00 0.00 4.70
7616 9756 5.700722 AATTGTCATGATATGCAGCGAAT 57.299 34.783 0.00 0.00 0.00 3.34
7617 9757 4.477302 TTGTCATGATATGCAGCGAATG 57.523 40.909 0.00 0.00 0.00 2.67
7618 9758 3.731089 TGTCATGATATGCAGCGAATGA 58.269 40.909 0.00 0.00 0.00 2.57
7619 9759 4.320870 TGTCATGATATGCAGCGAATGAT 58.679 39.130 0.00 0.00 0.00 2.45
7620 9760 4.758165 TGTCATGATATGCAGCGAATGATT 59.242 37.500 0.00 0.00 0.00 2.57
7621 9761 5.933463 TGTCATGATATGCAGCGAATGATTA 59.067 36.000 0.00 0.56 0.00 1.75
7622 9762 6.128472 TGTCATGATATGCAGCGAATGATTAC 60.128 38.462 0.00 0.00 0.00 1.89
7623 9763 5.352293 TCATGATATGCAGCGAATGATTACC 59.648 40.000 0.00 0.00 0.00 2.85
7624 9764 4.898320 TGATATGCAGCGAATGATTACCT 58.102 39.130 0.00 0.00 0.00 3.08
7625 9765 4.692155 TGATATGCAGCGAATGATTACCTG 59.308 41.667 0.00 1.49 0.00 4.00
7626 9766 1.016627 TGCAGCGAATGATTACCTGC 58.983 50.000 17.50 17.50 46.68 4.85
7627 9767 1.016627 GCAGCGAATGATTACCTGCA 58.983 50.000 18.73 0.00 46.00 4.41
7628 9768 1.605710 GCAGCGAATGATTACCTGCAT 59.394 47.619 18.73 0.00 46.00 3.96
7629 9769 2.807967 GCAGCGAATGATTACCTGCATA 59.192 45.455 18.73 0.00 46.00 3.14
7630 9770 3.438087 GCAGCGAATGATTACCTGCATAT 59.562 43.478 18.73 0.00 46.00 1.78
7631 9771 4.670992 GCAGCGAATGATTACCTGCATATG 60.671 45.833 18.73 0.00 46.00 1.78
7632 9772 4.692155 CAGCGAATGATTACCTGCATATGA 59.308 41.667 6.97 0.00 0.00 2.15
7633 9773 5.353400 CAGCGAATGATTACCTGCATATGAT 59.647 40.000 6.97 0.00 0.00 2.45
7634 9774 6.536224 CAGCGAATGATTACCTGCATATGATA 59.464 38.462 6.97 0.00 0.00 2.15
7635 9775 7.064966 CAGCGAATGATTACCTGCATATGATAA 59.935 37.037 6.97 0.00 0.00 1.75
7636 9776 7.279536 AGCGAATGATTACCTGCATATGATAAG 59.720 37.037 6.97 0.21 0.00 1.73
7637 9777 7.065085 GCGAATGATTACCTGCATATGATAAGT 59.935 37.037 6.97 0.24 0.00 2.24
7638 9778 8.385858 CGAATGATTACCTGCATATGATAAGTG 58.614 37.037 6.97 0.00 0.00 3.16
7639 9779 9.440773 GAATGATTACCTGCATATGATAAGTGA 57.559 33.333 6.97 0.00 0.00 3.41
7640 9780 9.970553 AATGATTACCTGCATATGATAAGTGAT 57.029 29.630 6.97 0.14 0.00 3.06
7642 9782 9.875691 TGATTACCTGCATATGATAAGTGATAC 57.124 33.333 6.97 0.00 0.00 2.24
7645 9785 6.940739 ACCTGCATATGATAAGTGATACTCC 58.059 40.000 6.97 0.00 0.00 3.85
7646 9786 6.070538 ACCTGCATATGATAAGTGATACTCCC 60.071 42.308 6.97 0.00 0.00 4.30
7647 9787 6.155910 CCTGCATATGATAAGTGATACTCCCT 59.844 42.308 6.97 0.00 0.00 4.20
7648 9788 7.175347 TGCATATGATAAGTGATACTCCCTC 57.825 40.000 6.97 0.00 0.00 4.30
7649 9789 6.956435 TGCATATGATAAGTGATACTCCCTCT 59.044 38.462 6.97 0.00 0.00 3.69
7650 9790 8.116026 TGCATATGATAAGTGATACTCCCTCTA 58.884 37.037 6.97 0.00 0.00 2.43
7651 9791 9.142014 GCATATGATAAGTGATACTCCCTCTAT 57.858 37.037 6.97 0.00 0.00 1.98
7655 9795 9.781425 ATGATAAGTGATACTCCCTCTATGAAT 57.219 33.333 0.00 0.00 0.00 2.57
7656 9796 9.607333 TGATAAGTGATACTCCCTCTATGAATT 57.393 33.333 0.00 0.00 0.00 2.17
7668 9808 9.743057 CTCCCTCTATGAATTAATATAAGAGCG 57.257 37.037 9.76 4.55 0.00 5.03
7669 9809 9.256228 TCCCTCTATGAATTAATATAAGAGCGT 57.744 33.333 9.76 0.00 0.00 5.07
7670 9810 9.877178 CCCTCTATGAATTAATATAAGAGCGTT 57.123 33.333 9.76 0.00 0.00 4.84
7684 9824 9.765795 ATATAAGAGCGTTTAGATTGCTAAAGT 57.234 29.630 0.00 0.00 44.78 2.66
7686 9826 7.527084 AAGAGCGTTTAGATTGCTAAAGTAG 57.473 36.000 0.00 0.00 44.78 2.57
7687 9827 6.631962 AGAGCGTTTAGATTGCTAAAGTAGT 58.368 36.000 0.00 0.00 44.78 2.73
7688 9828 6.531948 AGAGCGTTTAGATTGCTAAAGTAGTG 59.468 38.462 0.00 0.00 44.78 2.74
7689 9829 6.395629 AGCGTTTAGATTGCTAAAGTAGTGA 58.604 36.000 0.00 0.00 44.78 3.41
7690 9830 7.042335 AGCGTTTAGATTGCTAAAGTAGTGAT 58.958 34.615 0.00 0.00 44.78 3.06
7691 9831 7.222999 AGCGTTTAGATTGCTAAAGTAGTGATC 59.777 37.037 0.00 0.00 44.78 2.92
7692 9832 7.222999 GCGTTTAGATTGCTAAAGTAGTGATCT 59.777 37.037 0.00 0.00 44.78 2.75
7693 9833 9.731819 CGTTTAGATTGCTAAAGTAGTGATCTA 57.268 33.333 0.00 0.00 44.78 1.98
7701 9841 9.944376 TTGCTAAAGTAGTGATCTAAACATTCT 57.056 29.630 0.00 0.00 0.00 2.40
7702 9842 9.944376 TGCTAAAGTAGTGATCTAAACATTCTT 57.056 29.630 0.00 0.00 0.00 2.52
7720 9860 9.774413 AACATTCTTATAATAGTTTACGGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
7721 9861 9.151177 ACATTCTTATAATAGTTTACGGAGGGA 57.849 33.333 0.00 0.00 0.00 4.20
7722 9862 9.991906 CATTCTTATAATAGTTTACGGAGGGAA 57.008 33.333 0.00 0.00 0.00 3.97
7729 9869 7.850935 AATAGTTTACGGAGGGAATAGATGA 57.149 36.000 0.00 0.00 0.00 2.92
7730 9870 5.532664 AGTTTACGGAGGGAATAGATGAC 57.467 43.478 0.00 0.00 0.00 3.06
7731 9871 4.960469 AGTTTACGGAGGGAATAGATGACA 59.040 41.667 0.00 0.00 0.00 3.58
7732 9872 5.424252 AGTTTACGGAGGGAATAGATGACAA 59.576 40.000 0.00 0.00 0.00 3.18
7733 9873 6.099845 AGTTTACGGAGGGAATAGATGACAAT 59.900 38.462 0.00 0.00 0.00 2.71
7734 9874 7.289317 AGTTTACGGAGGGAATAGATGACAATA 59.711 37.037 0.00 0.00 0.00 1.90
7735 9875 5.730296 ACGGAGGGAATAGATGACAATAG 57.270 43.478 0.00 0.00 0.00 1.73
7736 9876 5.394738 ACGGAGGGAATAGATGACAATAGA 58.605 41.667 0.00 0.00 0.00 1.98
7737 9877 6.019748 ACGGAGGGAATAGATGACAATAGAT 58.980 40.000 0.00 0.00 0.00 1.98
7738 9878 6.071108 ACGGAGGGAATAGATGACAATAGATG 60.071 42.308 0.00 0.00 0.00 2.90
7739 9879 6.629068 CGGAGGGAATAGATGACAATAGATGG 60.629 46.154 0.00 0.00 0.00 3.51
7740 9880 6.441924 GGAGGGAATAGATGACAATAGATGGA 59.558 42.308 0.00 0.00 0.00 3.41
7741 9881 7.038017 GGAGGGAATAGATGACAATAGATGGAA 60.038 40.741 0.00 0.00 0.00 3.53
7742 9882 8.460317 AGGGAATAGATGACAATAGATGGAAT 57.540 34.615 0.00 0.00 0.00 3.01
7743 9883 8.898728 AGGGAATAGATGACAATAGATGGAATT 58.101 33.333 0.00 0.00 0.00 2.17
7757 9897 3.011566 TGGAATTATGTCCAATGCGGT 57.988 42.857 0.00 0.00 44.91 5.68
7758 9898 3.360867 TGGAATTATGTCCAATGCGGTT 58.639 40.909 0.00 0.00 44.91 4.44
7759 9899 3.130164 TGGAATTATGTCCAATGCGGTTG 59.870 43.478 0.00 0.00 44.91 3.77
7768 9908 1.014352 CAATGCGGTTGGTACCTAGC 58.986 55.000 14.36 14.48 42.66 3.42
7769 9909 0.461339 AATGCGGTTGGTACCTAGCG 60.461 55.000 33.65 33.65 42.66 4.26
7770 9910 2.202837 GCGGTTGGTACCTAGCGG 60.203 66.667 36.34 23.58 42.66 5.52
7772 9912 1.153706 CGGTTGGTACCTAGCGGTG 60.154 63.158 31.50 11.25 45.18 4.94
7773 9913 1.449070 GGTTGGTACCTAGCGGTGC 60.449 63.158 14.36 0.00 45.18 5.01
7774 9914 1.294138 GTTGGTACCTAGCGGTGCA 59.706 57.895 14.36 0.00 46.53 4.57
7775 9915 0.107848 GTTGGTACCTAGCGGTGCAT 60.108 55.000 14.36 0.00 46.53 3.96
7776 9916 1.137479 GTTGGTACCTAGCGGTGCATA 59.863 52.381 14.36 0.00 46.53 3.14
7777 9917 0.748450 TGGTACCTAGCGGTGCATAC 59.252 55.000 14.36 0.00 46.53 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.048601 TCGTTGACCTCTTCTGCCTT 58.951 50.000 0.00 0.00 0.00 4.35
69 70 1.533625 TGGTTCAATTGCCGAGAAGG 58.466 50.000 0.00 0.00 44.97 3.46
101 121 1.500783 CCACCATGGTTCCTGGGTCT 61.501 60.000 16.84 0.00 38.14 3.85
126 146 4.070552 GTCGGTCTGCCTCGCCTT 62.071 66.667 0.00 0.00 0.00 4.35
225 253 5.399038 CCCACATTACCATCCCTTCATTACT 60.399 44.000 0.00 0.00 0.00 2.24
299 327 2.159142 CCACCATAACCGTACCTCTCAC 60.159 54.545 0.00 0.00 0.00 3.51
314 342 2.631062 TCGTTATATCTTCCGCCACCAT 59.369 45.455 0.00 0.00 0.00 3.55
340 368 2.965831 TCCCTATGCTGCGACTCTAATT 59.034 45.455 0.00 0.00 0.00 1.40
371 404 0.744414 CCGTGCTAGGTTCCCATGTG 60.744 60.000 0.00 0.00 0.00 3.21
374 407 0.469917 CATCCGTGCTAGGTTCCCAT 59.530 55.000 0.00 0.00 0.00 4.00
545 908 0.320421 GACTTGCCACCGCTAAGTGA 60.320 55.000 0.00 0.00 40.34 3.41
595 959 4.349048 ACAGTATGGTCCATGAGTATGCAT 59.651 41.667 15.10 3.79 43.62 3.96
600 965 6.238925 CGTTGATACAGTATGGTCCATGAGTA 60.239 42.308 15.10 13.48 43.62 2.59
605 970 3.494398 GCCGTTGATACAGTATGGTCCAT 60.494 47.826 9.88 9.88 43.62 3.41
608 973 3.454371 AGCCGTTGATACAGTATGGTC 57.546 47.619 0.00 0.00 43.62 4.02
611 976 8.988064 ATTTCTATAGCCGTTGATACAGTATG 57.012 34.615 0.00 0.00 46.00 2.39
618 983 8.585018 TCATCTGAATTTCTATAGCCGTTGATA 58.415 33.333 0.00 0.00 0.00 2.15
639 1005 2.760650 TCCACATGAAGCTACGTCATCT 59.239 45.455 0.00 0.00 33.37 2.90
648 1014 1.649321 TCCTCACTCCACATGAAGCT 58.351 50.000 0.00 0.00 0.00 3.74
704 1070 6.127619 ACAGTCTGCAAGGCCTTTTATTAATC 60.128 38.462 17.61 2.06 41.78 1.75
705 1071 5.716703 ACAGTCTGCAAGGCCTTTTATTAAT 59.283 36.000 17.61 0.00 41.78 1.40
706 1072 5.076873 ACAGTCTGCAAGGCCTTTTATTAA 58.923 37.500 17.61 0.00 41.78 1.40
708 1074 3.500343 ACAGTCTGCAAGGCCTTTTATT 58.500 40.909 17.61 0.00 41.78 1.40
710 1076 2.106511 AGACAGTCTGCAAGGCCTTTTA 59.893 45.455 17.61 6.78 41.78 1.52
711 1077 1.133668 AGACAGTCTGCAAGGCCTTTT 60.134 47.619 17.61 0.00 41.78 2.27
712 1078 0.475906 AGACAGTCTGCAAGGCCTTT 59.524 50.000 17.61 0.00 41.78 3.11
713 1079 0.036022 GAGACAGTCTGCAAGGCCTT 59.964 55.000 13.78 13.78 41.78 4.35
714 1080 1.123861 TGAGACAGTCTGCAAGGCCT 61.124 55.000 8.15 0.00 41.78 5.19
715 1081 0.250467 TTGAGACAGTCTGCAAGGCC 60.250 55.000 8.15 0.00 41.78 5.19
716 1082 1.597742 TTTGAGACAGTCTGCAAGGC 58.402 50.000 8.15 0.00 40.46 4.35
737 1103 2.818432 CAGCAGTCTGGCTCATCTTTTT 59.182 45.455 1.14 0.00 43.68 1.94
738 1104 2.434428 CAGCAGTCTGGCTCATCTTTT 58.566 47.619 1.14 0.00 43.68 2.27
739 1105 1.949547 GCAGCAGTCTGGCTCATCTTT 60.950 52.381 1.14 0.00 43.68 2.52
740 1106 0.392729 GCAGCAGTCTGGCTCATCTT 60.393 55.000 1.14 0.00 43.68 2.40
741 1107 1.221293 GCAGCAGTCTGGCTCATCT 59.779 57.895 1.14 0.00 43.68 2.90
742 1108 0.810823 GAGCAGCAGTCTGGCTCATC 60.811 60.000 20.16 7.46 43.68 2.92
743 1109 1.221293 GAGCAGCAGTCTGGCTCAT 59.779 57.895 20.16 3.09 43.68 2.90
744 1110 1.886253 GAGAGCAGCAGTCTGGCTCA 61.886 60.000 24.40 0.00 43.68 4.26
745 1111 1.153588 GAGAGCAGCAGTCTGGCTC 60.154 63.158 18.38 18.38 43.68 4.70
747 1113 0.321475 AAAGAGAGCAGCAGTCTGGC 60.321 55.000 1.14 0.00 40.65 4.85
748 1114 2.181954 AAAAGAGAGCAGCAGTCTGG 57.818 50.000 1.14 0.00 40.65 3.86
808 1174 4.154918 GGTTTCTGGCAGACATAAGAACAG 59.845 45.833 18.55 0.00 0.00 3.16
814 1180 3.420893 CCTTGGTTTCTGGCAGACATAA 58.579 45.455 18.55 6.33 0.00 1.90
815 1181 2.879756 GCCTTGGTTTCTGGCAGACATA 60.880 50.000 18.55 0.00 45.46 2.29
816 1182 1.915141 CCTTGGTTTCTGGCAGACAT 58.085 50.000 18.55 0.00 0.00 3.06
899 1265 1.251251 CAGCACAAAGAGGAAAGGGG 58.749 55.000 0.00 0.00 0.00 4.79
938 1304 1.004504 CTCTATTCGCCGCTCTTTTGC 60.005 52.381 0.00 0.00 0.00 3.68
1044 1411 1.485066 TCTCCGCCAAAATCTAGGGTC 59.515 52.381 0.00 0.00 0.00 4.46
1056 1423 2.748647 TCGACGTCATCTCCGCCA 60.749 61.111 17.16 0.00 0.00 5.69
1095 1462 3.018805 TCGGGGATGGGGGTTTCC 61.019 66.667 0.00 0.00 0.00 3.13
1248 1615 5.352016 CGAGGGTTTTTACCGATTAATGTCA 59.648 40.000 0.00 0.00 0.00 3.58
1324 1691 4.439057 AGCAGGTGGTATATACACAAACG 58.561 43.478 14.70 0.10 40.54 3.60
1356 1723 6.761714 ACTCAATACTCCCGATTTGAACATAC 59.238 38.462 0.00 0.00 0.00 2.39
1472 1848 2.032799 TCAACACGGTGTGAGCATTTTC 59.967 45.455 15.53 0.00 36.96 2.29
1503 1888 1.930503 TGACCGTATAGTGCAATTGCG 59.069 47.619 24.58 10.63 45.83 4.85
1623 2008 4.873827 GCGTTGGAGTATTGGATTACAAGA 59.126 41.667 0.00 0.00 43.48 3.02
1740 2125 5.337788 TGCAAAAGGTATAAAGGATTGGGT 58.662 37.500 0.00 0.00 0.00 4.51
1840 2225 0.368227 GATCGCTGACAGCAGAAACG 59.632 55.000 26.32 9.62 45.17 3.60
1864 2249 5.721232 ACAAAAGAACTGTATACCTCTCGG 58.279 41.667 0.00 0.00 0.00 4.63
1878 2263 8.617809 TCCTTACATACTGTTCAACAAAAGAAC 58.382 33.333 0.00 0.00 44.26 3.01
1921 2306 7.175410 ACAGTAAACTTTTCAAAAGTACGTCG 58.825 34.615 15.98 7.80 0.00 5.12
2035 2420 1.102154 CACACCACTGAGGCACAAAA 58.898 50.000 0.00 0.00 43.14 2.44
2260 2646 6.041523 ACAAGGCACAGCTTTAAAATAGGAAA 59.958 34.615 0.00 0.00 0.00 3.13
2364 2750 8.350722 TCAACCTAGAATAGAATGTACTTAGCG 58.649 37.037 0.00 0.00 42.77 4.26
2418 2804 4.008539 GAAACGACTTCCATCAGCAATC 57.991 45.455 0.00 0.00 0.00 2.67
2548 2934 3.002246 TGCGAAAACTAGCACTTTGACAG 59.998 43.478 0.00 0.00 38.59 3.51
2607 2993 4.885325 ACGAAAGGTTGTTGTAGGAAATGT 59.115 37.500 0.00 0.00 0.00 2.71
2619 3005 0.395312 ATCCCGTCACGAAAGGTTGT 59.605 50.000 0.00 0.00 0.00 3.32
2659 3045 3.540314 TTTGCCTGCTTTTGTGACAAT 57.460 38.095 0.00 0.00 0.00 2.71
2710 3097 2.430465 GCTGGCTCATCAAGACTCAAA 58.570 47.619 0.00 0.00 32.31 2.69
2761 3148 2.030007 AGGAATGGTCGTGCAAAACATG 60.030 45.455 1.86 0.00 36.55 3.21
2843 3237 4.280425 ACAATGACATGGCATGTACACAAA 59.720 37.500 31.48 14.03 45.03 2.83
2852 3247 4.603989 TTTTGTGACAATGACATGGCAT 57.396 36.364 8.71 8.71 41.24 4.40
2858 3253 3.737663 GCCTGCTTTTTGTGACAATGACA 60.738 43.478 0.00 0.00 0.00 3.58
2859 3254 2.796593 GCCTGCTTTTTGTGACAATGAC 59.203 45.455 0.00 0.00 0.00 3.06
2933 3328 6.210784 TGCTGTTAATACTAGTTCACTCAGGT 59.789 38.462 0.00 0.00 0.00 4.00
3253 3668 3.375699 TGGGAGGAGTCCATTAAGAGAC 58.624 50.000 12.86 0.43 46.07 3.36
3420 3838 7.402862 TGATGATATACGAGATAGAGTTGGGA 58.597 38.462 0.00 0.00 0.00 4.37
3512 3932 2.080286 AGGCGACATGTACAACAGTC 57.920 50.000 0.00 7.95 0.00 3.51
3520 3940 2.745281 GCCAACTAAAAGGCGACATGTA 59.255 45.455 0.00 0.00 41.70 2.29
3593 5644 2.368221 TGCCACAAAAGCTAAAAGGCAT 59.632 40.909 13.70 0.00 44.89 4.40
3684 5737 2.718609 AGGATGGGGGTATTGATGAAGG 59.281 50.000 0.00 0.00 0.00 3.46
4019 6092 6.044754 TCCCAATTAAGATAGGACTGCATCAT 59.955 38.462 0.00 0.00 0.00 2.45
4104 6199 2.650322 TGGAGAAACACAAAGTCCCAC 58.350 47.619 0.00 0.00 0.00 4.61
4177 6272 5.372343 AGGACTTGCATATGGTGTTCATA 57.628 39.130 4.56 0.00 42.00 2.15
4467 6566 4.147219 CTAACCAAGCTTTTCAACCTCG 57.853 45.455 0.00 0.00 0.00 4.63
4499 6598 1.564348 GAAAGGCCTTGGGGACATAGA 59.436 52.381 21.33 0.00 45.05 1.98
4600 6699 0.109319 GTTTTGTGCGGCGAATCCAT 60.109 50.000 12.98 0.00 34.01 3.41
4627 6726 2.494073 GGACGACTCCTTTGATGAGACT 59.506 50.000 0.00 0.00 33.07 3.24
4694 6793 1.067495 GCATAGATGGCGGGAGTACTC 60.067 57.143 14.87 14.87 0.00 2.59
4718 6817 4.081198 ACTCTTGGTGAAGGATGATGAGAC 60.081 45.833 0.00 0.00 0.00 3.36
4876 6979 0.250467 GCTGTCAGTGAAGCAAGGGA 60.250 55.000 17.22 0.00 39.31 4.20
4981 7094 6.778821 TGATGTCCAGAAGGTGATTAAAGAA 58.221 36.000 0.00 0.00 35.89 2.52
5048 7161 0.244178 GAGGAGTTCGGAGTGTCCAC 59.756 60.000 5.48 0.00 35.91 4.02
5059 7172 2.579738 GTGGCCTCGGAGGAGTTC 59.420 66.667 27.95 13.05 37.67 3.01
5126 7242 2.614013 GGGCCCTTGGGAGGAAGA 60.614 66.667 17.04 0.00 46.74 2.87
5159 7275 0.741221 GTAGCTCAGGCGTTCAAGGG 60.741 60.000 0.00 0.00 44.37 3.95
5216 7332 1.519455 AGCGAGATAAGCGTGCCAC 60.519 57.895 0.00 0.00 40.04 5.01
5230 7346 1.868987 TTCGGATTCGTGTCCAGCGA 61.869 55.000 0.00 0.00 38.21 4.93
5255 7371 0.764890 AAGCTGGTGGTTGCTGACTA 59.235 50.000 0.00 0.00 39.71 2.59
5452 7568 4.095632 GGAGAAGATGTCTTAAGCTTTGCC 59.904 45.833 3.20 0.00 36.41 4.52
5667 7788 6.539103 GGGGACTTAGTTCTCAATGTTATCAC 59.461 42.308 0.00 0.00 0.00 3.06
5862 7983 1.698506 TGCGTCCAGGAAACCAAATT 58.301 45.000 0.00 0.00 0.00 1.82
5891 8012 0.965866 CAGCGGTGAGGAGAGGTGTA 60.966 60.000 9.50 0.00 0.00 2.90
6010 8131 2.271800 GGTCTTCGCATTTGACTCGAT 58.728 47.619 0.00 0.00 31.96 3.59
6249 8378 5.637810 CGTAAAAACTCAGCCACTCTTATGA 59.362 40.000 0.00 0.00 0.00 2.15
6305 8437 2.529643 TCCCAAGCCCCGGTACAA 60.530 61.111 0.00 0.00 0.00 2.41
6307 8439 4.105553 GGTCCCAAGCCCCGGTAC 62.106 72.222 0.00 0.00 0.00 3.34
6407 8539 4.445452 GTACTTCACCGTACCAATCAGA 57.555 45.455 0.00 0.00 34.97 3.27
6590 8722 0.388134 TTCCTCGTCAACTAGCACGC 60.388 55.000 4.92 0.00 35.93 5.34
6593 8725 4.265904 TCAATTTCCTCGTCAACTAGCA 57.734 40.909 0.00 0.00 0.00 3.49
6639 8771 0.108424 GTGCTTCCTCTGCATCGACT 60.108 55.000 0.00 0.00 42.69 4.18
6741 8873 4.098044 TGTTCTTCGTGTATCTCTCCATCC 59.902 45.833 0.00 0.00 0.00 3.51
6756 8888 5.804979 ACTTCAATTTTGTGGTTGTTCTTCG 59.195 36.000 0.00 0.00 0.00 3.79
6844 8976 3.747193 CTTCACCGCAACATTCATACAC 58.253 45.455 0.00 0.00 0.00 2.90
6853 8985 2.933878 AAGGTCGCTTCACCGCAACA 62.934 55.000 0.00 0.00 41.90 3.33
7033 9165 8.669243 GGAGTAAGACATCCTTAAAATGAACTG 58.331 37.037 4.87 0.00 38.94 3.16
7034 9166 8.606830 AGGAGTAAGACATCCTTAAAATGAACT 58.393 33.333 4.87 3.42 43.62 3.01
7035 9167 8.669243 CAGGAGTAAGACATCCTTAAAATGAAC 58.331 37.037 4.87 0.44 43.62 3.18
7036 9168 8.602424 TCAGGAGTAAGACATCCTTAAAATGAA 58.398 33.333 4.87 0.00 43.62 2.57
7037 9169 8.146053 TCAGGAGTAAGACATCCTTAAAATGA 57.854 34.615 4.87 0.00 43.62 2.57
7038 9170 8.043710 ACTCAGGAGTAAGACATCCTTAAAATG 58.956 37.037 0.00 0.00 43.62 2.32
7039 9171 8.152023 ACTCAGGAGTAAGACATCCTTAAAAT 57.848 34.615 0.00 0.00 43.62 1.82
7040 9172 7.554959 ACTCAGGAGTAAGACATCCTTAAAA 57.445 36.000 0.00 0.00 43.62 1.52
7041 9173 7.894364 AGTACTCAGGAGTAAGACATCCTTAAA 59.106 37.037 10.54 0.00 43.62 1.52
7049 9181 5.186942 CAGCTAGTACTCAGGAGTAAGACA 58.813 45.833 10.54 0.00 44.62 3.41
7052 9184 3.886505 CCCAGCTAGTACTCAGGAGTAAG 59.113 52.174 10.54 7.16 44.62 2.34
7145 9277 5.758296 CCACAAAGCTACACTAGAACTGAAA 59.242 40.000 0.00 0.00 0.00 2.69
7146 9278 5.297547 CCACAAAGCTACACTAGAACTGAA 58.702 41.667 0.00 0.00 0.00 3.02
7147 9279 4.262463 CCCACAAAGCTACACTAGAACTGA 60.262 45.833 0.00 0.00 0.00 3.41
7199 9331 1.743995 GGTAGGCGCGGTTGTCAAT 60.744 57.895 8.83 0.00 0.00 2.57
7269 9401 1.261619 GATTAGCGGTGAAATGGCTCG 59.738 52.381 0.00 0.00 38.19 5.03
7293 9425 5.275695 CGAAAATCCATTCAATAAAACGCCG 60.276 40.000 0.00 0.00 0.00 6.46
7296 9428 8.178964 TCCTACGAAAATCCATTCAATAAAACG 58.821 33.333 0.00 0.00 0.00 3.60
7385 9517 1.083489 CACGTGTGGCCGTATGATTT 58.917 50.000 7.58 0.00 39.45 2.17
7394 9526 3.595758 AGCAAAGCACGTGTGGCC 61.596 61.111 18.38 0.00 0.00 5.36
7395 9527 2.353839 CAGCAAAGCACGTGTGGC 60.354 61.111 18.38 14.98 0.00 5.01
7396 9528 2.353839 GCAGCAAAGCACGTGTGG 60.354 61.111 18.38 5.52 0.00 4.17
7397 9529 2.723271 CGCAGCAAAGCACGTGTG 60.723 61.111 18.38 8.90 0.00 3.82
7418 9552 7.058005 GCGATAGATTCTTCATCGTTGTTTAC 58.942 38.462 16.30 0.18 42.65 2.01
7426 9560 2.319472 TGCGCGATAGATTCTTCATCG 58.681 47.619 12.10 12.46 43.34 3.84
7440 9574 6.584184 TCTTCATCAATTTTATTTTTGCGCGA 59.416 30.769 12.10 0.00 0.00 5.87
7456 9590 6.196918 AGGGCATATCTGATTCTTCATCAA 57.803 37.500 0.00 0.00 41.66 2.57
7457 9591 5.837770 AGGGCATATCTGATTCTTCATCA 57.162 39.130 0.00 0.00 39.82 3.07
7479 9619 5.046878 ACATAGGTTGAAGTCCACGTCAATA 60.047 40.000 10.63 2.32 43.85 1.90
7505 9645 3.399330 AGCGCAGTTTGCTTCTAGTAAA 58.601 40.909 11.47 0.00 42.25 2.01
7525 9665 1.574428 CAAAACCGGGACAGCGAAG 59.426 57.895 6.32 0.00 0.00 3.79
7528 9668 1.241315 AATCCAAAACCGGGACAGCG 61.241 55.000 6.32 0.00 37.23 5.18
7529 9669 0.243636 CAATCCAAAACCGGGACAGC 59.756 55.000 6.32 0.00 37.23 4.40
7530 9670 1.539827 GACAATCCAAAACCGGGACAG 59.460 52.381 6.32 0.00 37.23 3.51
7531 9671 1.133761 TGACAATCCAAAACCGGGACA 60.134 47.619 6.32 0.00 37.23 4.02
7532 9672 1.611519 TGACAATCCAAAACCGGGAC 58.388 50.000 6.32 0.00 37.23 4.46
7533 9673 2.166829 CATGACAATCCAAAACCGGGA 58.833 47.619 6.32 0.00 39.14 5.14
7534 9674 1.892474 ACATGACAATCCAAAACCGGG 59.108 47.619 6.32 0.00 0.00 5.73
7535 9675 3.243704 ACAACATGACAATCCAAAACCGG 60.244 43.478 0.00 0.00 0.00 5.28
7536 9676 3.976169 ACAACATGACAATCCAAAACCG 58.024 40.909 0.00 0.00 0.00 4.44
7537 9677 7.826690 ACTATACAACATGACAATCCAAAACC 58.173 34.615 0.00 0.00 0.00 3.27
7538 9678 9.691362 AAACTATACAACATGACAATCCAAAAC 57.309 29.630 0.00 0.00 0.00 2.43
7573 9713 8.637986 ACAATTTTGTGCCGGTCATTTATATAT 58.362 29.630 1.90 0.00 40.49 0.86
7574 9714 8.001881 ACAATTTTGTGCCGGTCATTTATATA 57.998 30.769 1.90 0.00 40.49 0.86
7575 9715 6.872920 ACAATTTTGTGCCGGTCATTTATAT 58.127 32.000 1.90 0.00 40.49 0.86
7576 9716 6.071896 TGACAATTTTGTGCCGGTCATTTATA 60.072 34.615 1.90 0.00 42.43 0.98
7577 9717 5.146010 ACAATTTTGTGCCGGTCATTTAT 57.854 34.783 1.90 0.00 40.49 1.40
7578 9718 4.038042 TGACAATTTTGTGCCGGTCATTTA 59.962 37.500 1.90 0.00 42.43 1.40
7579 9719 3.181471 TGACAATTTTGTGCCGGTCATTT 60.181 39.130 1.90 0.00 42.43 2.32
7580 9720 2.363680 TGACAATTTTGTGCCGGTCATT 59.636 40.909 1.90 0.00 42.43 2.57
7581 9721 1.959985 TGACAATTTTGTGCCGGTCAT 59.040 42.857 1.90 0.00 42.43 3.06
7582 9722 1.393603 TGACAATTTTGTGCCGGTCA 58.606 45.000 1.90 0.00 42.43 4.02
7583 9723 2.030363 TCATGACAATTTTGTGCCGGTC 60.030 45.455 1.90 0.00 42.43 4.79
7584 9724 1.959985 TCATGACAATTTTGTGCCGGT 59.040 42.857 1.90 0.00 42.43 5.28
7585 9725 2.721274 TCATGACAATTTTGTGCCGG 57.279 45.000 0.00 0.00 42.43 6.13
7586 9726 4.207635 GCATATCATGACAATTTTGTGCCG 59.792 41.667 0.00 0.00 42.43 5.69
7587 9727 5.110598 TGCATATCATGACAATTTTGTGCC 58.889 37.500 0.00 0.00 42.43 5.01
7588 9728 5.276678 GCTGCATATCATGACAATTTTGTGC 60.277 40.000 0.00 1.78 42.43 4.57
7589 9729 5.051973 CGCTGCATATCATGACAATTTTGTG 60.052 40.000 0.00 0.00 42.43 3.33
7590 9730 5.038683 CGCTGCATATCATGACAATTTTGT 58.961 37.500 0.00 0.00 45.65 2.83
7591 9731 5.275494 TCGCTGCATATCATGACAATTTTG 58.725 37.500 0.00 0.00 0.00 2.44
7592 9732 5.503662 TCGCTGCATATCATGACAATTTT 57.496 34.783 0.00 0.00 0.00 1.82
7593 9733 5.503662 TTCGCTGCATATCATGACAATTT 57.496 34.783 0.00 0.00 0.00 1.82
7594 9734 5.239963 TCATTCGCTGCATATCATGACAATT 59.760 36.000 0.00 0.00 0.00 2.32
7595 9735 4.758165 TCATTCGCTGCATATCATGACAAT 59.242 37.500 0.00 0.00 0.00 2.71
7596 9736 4.128643 TCATTCGCTGCATATCATGACAA 58.871 39.130 0.00 0.00 0.00 3.18
7597 9737 3.731089 TCATTCGCTGCATATCATGACA 58.269 40.909 0.00 0.00 0.00 3.58
7598 9738 4.941325 ATCATTCGCTGCATATCATGAC 57.059 40.909 0.00 0.00 0.00 3.06
7599 9739 5.352293 GGTAATCATTCGCTGCATATCATGA 59.648 40.000 0.00 0.00 0.00 3.07
7600 9740 5.353400 AGGTAATCATTCGCTGCATATCATG 59.647 40.000 0.00 0.00 0.00 3.07
7601 9741 5.353400 CAGGTAATCATTCGCTGCATATCAT 59.647 40.000 0.00 0.00 0.00 2.45
7602 9742 4.692155 CAGGTAATCATTCGCTGCATATCA 59.308 41.667 0.00 0.00 0.00 2.15
7603 9743 4.436584 GCAGGTAATCATTCGCTGCATATC 60.437 45.833 0.00 0.00 36.49 1.63
7604 9744 3.438087 GCAGGTAATCATTCGCTGCATAT 59.562 43.478 0.00 0.00 36.49 1.78
7605 9745 2.807967 GCAGGTAATCATTCGCTGCATA 59.192 45.455 0.00 0.00 36.49 3.14
7606 9746 1.605710 GCAGGTAATCATTCGCTGCAT 59.394 47.619 0.00 0.00 36.49 3.96
7607 9747 1.016627 GCAGGTAATCATTCGCTGCA 58.983 50.000 0.00 0.00 36.49 4.41
7608 9748 1.016627 TGCAGGTAATCATTCGCTGC 58.983 50.000 0.00 0.00 36.94 5.25
7609 9749 4.692155 TCATATGCAGGTAATCATTCGCTG 59.308 41.667 0.00 0.00 0.00 5.18
7610 9750 4.898320 TCATATGCAGGTAATCATTCGCT 58.102 39.130 0.00 0.00 0.00 4.93
7611 9751 5.808042 ATCATATGCAGGTAATCATTCGC 57.192 39.130 0.00 0.00 0.00 4.70
7612 9752 8.385858 CACTTATCATATGCAGGTAATCATTCG 58.614 37.037 0.00 0.00 0.00 3.34
7613 9753 9.440773 TCACTTATCATATGCAGGTAATCATTC 57.559 33.333 0.00 0.00 0.00 2.67
7614 9754 9.970553 ATCACTTATCATATGCAGGTAATCATT 57.029 29.630 0.00 0.00 0.00 2.57
7616 9756 9.875691 GTATCACTTATCATATGCAGGTAATCA 57.124 33.333 0.00 0.00 0.00 2.57
7619 9759 8.531982 GGAGTATCACTTATCATATGCAGGTAA 58.468 37.037 0.00 0.00 36.25 2.85
7620 9760 7.124298 GGGAGTATCACTTATCATATGCAGGTA 59.876 40.741 0.00 0.00 33.91 3.08
7621 9761 6.070538 GGGAGTATCACTTATCATATGCAGGT 60.071 42.308 0.00 0.00 33.91 4.00
7622 9762 6.344500 GGGAGTATCACTTATCATATGCAGG 58.656 44.000 0.00 0.00 33.91 4.85
7642 9782 9.743057 CGCTCTTATATTAATTCATAGAGGGAG 57.257 37.037 18.40 5.93 36.40 4.30
7643 9783 9.256228 ACGCTCTTATATTAATTCATAGAGGGA 57.744 33.333 24.14 2.52 37.30 4.20
7644 9784 9.877178 AACGCTCTTATATTAATTCATAGAGGG 57.123 33.333 19.96 19.96 38.95 4.30
7658 9798 9.765795 ACTTTAGCAATCTAAACGCTCTTATAT 57.234 29.630 0.00 0.00 39.23 0.86
7660 9800 9.250624 CTACTTTAGCAATCTAAACGCTCTTAT 57.749 33.333 0.00 0.00 39.23 1.73
7661 9801 8.248945 ACTACTTTAGCAATCTAAACGCTCTTA 58.751 33.333 0.00 0.00 39.23 2.10
7662 9802 7.063544 CACTACTTTAGCAATCTAAACGCTCTT 59.936 37.037 0.00 0.00 39.23 2.85
7663 9803 6.531948 CACTACTTTAGCAATCTAAACGCTCT 59.468 38.462 0.00 0.00 39.23 4.09
7664 9804 6.530534 TCACTACTTTAGCAATCTAAACGCTC 59.469 38.462 0.00 0.00 39.23 5.03
7665 9805 6.395629 TCACTACTTTAGCAATCTAAACGCT 58.604 36.000 0.00 0.00 39.23 5.07
7666 9806 6.642683 TCACTACTTTAGCAATCTAAACGC 57.357 37.500 0.00 0.00 39.23 4.84
7667 9807 8.635877 AGATCACTACTTTAGCAATCTAAACG 57.364 34.615 0.00 0.00 39.23 3.60
7675 9815 9.944376 AGAATGTTTAGATCACTACTTTAGCAA 57.056 29.630 0.00 0.00 0.00 3.91
7676 9816 9.944376 AAGAATGTTTAGATCACTACTTTAGCA 57.056 29.630 0.00 0.00 0.00 3.49
7694 9834 9.774413 CCCTCCGTAAACTATTATAAGAATGTT 57.226 33.333 0.00 0.00 0.00 2.71
7695 9835 9.151177 TCCCTCCGTAAACTATTATAAGAATGT 57.849 33.333 0.00 0.00 0.00 2.71
7696 9836 9.991906 TTCCCTCCGTAAACTATTATAAGAATG 57.008 33.333 0.00 0.00 0.00 2.67
7703 9843 9.543231 TCATCTATTCCCTCCGTAAACTATTAT 57.457 33.333 0.00 0.00 0.00 1.28
7704 9844 8.800332 GTCATCTATTCCCTCCGTAAACTATTA 58.200 37.037 0.00 0.00 0.00 0.98
7705 9845 7.289317 TGTCATCTATTCCCTCCGTAAACTATT 59.711 37.037 0.00 0.00 0.00 1.73
7706 9846 6.781014 TGTCATCTATTCCCTCCGTAAACTAT 59.219 38.462 0.00 0.00 0.00 2.12
7707 9847 6.131264 TGTCATCTATTCCCTCCGTAAACTA 58.869 40.000 0.00 0.00 0.00 2.24
7708 9848 4.960469 TGTCATCTATTCCCTCCGTAAACT 59.040 41.667 0.00 0.00 0.00 2.66
7709 9849 5.272283 TGTCATCTATTCCCTCCGTAAAC 57.728 43.478 0.00 0.00 0.00 2.01
7710 9850 5.943349 TTGTCATCTATTCCCTCCGTAAA 57.057 39.130 0.00 0.00 0.00 2.01
7711 9851 7.008332 TCTATTGTCATCTATTCCCTCCGTAA 58.992 38.462 0.00 0.00 0.00 3.18
7712 9852 6.549242 TCTATTGTCATCTATTCCCTCCGTA 58.451 40.000 0.00 0.00 0.00 4.02
7713 9853 5.394738 TCTATTGTCATCTATTCCCTCCGT 58.605 41.667 0.00 0.00 0.00 4.69
7714 9854 5.984695 TCTATTGTCATCTATTCCCTCCG 57.015 43.478 0.00 0.00 0.00 4.63
7715 9855 6.441924 TCCATCTATTGTCATCTATTCCCTCC 59.558 42.308 0.00 0.00 0.00 4.30
7716 9856 7.487822 TCCATCTATTGTCATCTATTCCCTC 57.512 40.000 0.00 0.00 0.00 4.30
7717 9857 7.878621 TTCCATCTATTGTCATCTATTCCCT 57.121 36.000 0.00 0.00 0.00 4.20
7724 9864 8.663167 TGGACATAATTCCATCTATTGTCATCT 58.337 33.333 0.00 0.00 41.00 2.90
7725 9865 8.853077 TGGACATAATTCCATCTATTGTCATC 57.147 34.615 0.00 0.00 41.00 2.92
7726 9866 9.818270 ATTGGACATAATTCCATCTATTGTCAT 57.182 29.630 0.00 0.00 45.42 3.06
7727 9867 9.070179 CATTGGACATAATTCCATCTATTGTCA 57.930 33.333 0.00 0.00 45.42 3.58
7728 9868 8.025445 GCATTGGACATAATTCCATCTATTGTC 58.975 37.037 0.00 0.00 45.42 3.18
7729 9869 7.308770 CGCATTGGACATAATTCCATCTATTGT 60.309 37.037 0.00 0.00 45.42 2.71
7730 9870 7.025365 CGCATTGGACATAATTCCATCTATTG 58.975 38.462 0.00 0.00 45.42 1.90
7731 9871 6.151648 CCGCATTGGACATAATTCCATCTATT 59.848 38.462 0.00 0.00 45.42 1.73
7732 9872 5.649395 CCGCATTGGACATAATTCCATCTAT 59.351 40.000 0.00 0.00 45.42 1.98
7733 9873 5.003160 CCGCATTGGACATAATTCCATCTA 58.997 41.667 0.00 0.00 45.42 1.98
7734 9874 3.822735 CCGCATTGGACATAATTCCATCT 59.177 43.478 0.00 0.00 45.42 2.90
7735 9875 3.569701 ACCGCATTGGACATAATTCCATC 59.430 43.478 0.00 0.00 45.42 3.51
7736 9876 3.565307 ACCGCATTGGACATAATTCCAT 58.435 40.909 0.00 0.00 45.42 3.41
7737 9877 3.011566 ACCGCATTGGACATAATTCCA 57.988 42.857 0.00 0.00 44.39 3.53
7738 9878 3.705604 CAACCGCATTGGACATAATTCC 58.294 45.455 0.00 0.00 42.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.