Multiple sequence alignment - TraesCS3D01G205000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G205000 | chr3D | 100.000 | 3402 | 0 | 0 | 1 | 3402 | 259433240 | 259436641 | 0.000000e+00 | 6283.0 |
1 | TraesCS3D01G205000 | chr3D | 79.756 | 573 | 65 | 28 | 399 | 934 | 498834803 | 498835361 | 5.360000e-98 | 368.0 |
2 | TraesCS3D01G205000 | chr3D | 91.333 | 150 | 9 | 2 | 3159 | 3304 | 352027433 | 352027284 | 5.760000e-48 | 202.0 |
3 | TraesCS3D01G205000 | chr3D | 91.216 | 148 | 11 | 2 | 3159 | 3305 | 507537419 | 507537565 | 2.070000e-47 | 200.0 |
4 | TraesCS3D01G205000 | chr3D | 90.604 | 149 | 10 | 4 | 2924 | 3071 | 559071503 | 559071358 | 9.630000e-46 | 195.0 |
5 | TraesCS3D01G205000 | chr3D | 98.901 | 91 | 1 | 0 | 3072 | 3162 | 259436221 | 259436311 | 2.720000e-36 | 163.0 |
6 | TraesCS3D01G205000 | chr3D | 93.878 | 98 | 6 | 0 | 3305 | 3402 | 507537993 | 507538090 | 7.610000e-32 | 148.0 |
7 | TraesCS3D01G205000 | chr3D | 89.011 | 91 | 9 | 1 | 35 | 124 | 236553955 | 236553865 | 9.980000e-21 | 111.0 |
8 | TraesCS3D01G205000 | chr3A | 96.365 | 2146 | 54 | 11 | 938 | 3071 | 354853621 | 354851488 | 0.000000e+00 | 3509.0 |
9 | TraesCS3D01G205000 | chr3A | 88.350 | 618 | 54 | 7 | 340 | 946 | 354859870 | 354859260 | 0.000000e+00 | 726.0 |
10 | TraesCS3D01G205000 | chr3A | 89.562 | 297 | 27 | 4 | 2615 | 2908 | 60138890 | 60139185 | 1.150000e-99 | 374.0 |
11 | TraesCS3D01G205000 | chr3A | 88.535 | 314 | 28 | 8 | 2615 | 2923 | 171717890 | 171718200 | 1.150000e-99 | 374.0 |
12 | TraesCS3D01G205000 | chr3A | 88.304 | 171 | 16 | 4 | 22 | 190 | 147909691 | 147909859 | 5.760000e-48 | 202.0 |
13 | TraesCS3D01G205000 | chr3A | 96.907 | 97 | 3 | 0 | 3306 | 3402 | 354850135 | 354850039 | 2.720000e-36 | 163.0 |
14 | TraesCS3D01G205000 | chr3A | 93.617 | 94 | 6 | 0 | 3072 | 3165 | 354851577 | 354851484 | 1.270000e-29 | 141.0 |
15 | TraesCS3D01G205000 | chr3B | 96.589 | 2111 | 57 | 7 | 966 | 3066 | 366392613 | 366394718 | 0.000000e+00 | 3485.0 |
16 | TraesCS3D01G205000 | chr3B | 80.580 | 448 | 66 | 13 | 293 | 735 | 659489253 | 659489684 | 3.270000e-85 | 326.0 |
17 | TraesCS3D01G205000 | chr3B | 91.837 | 147 | 10 | 2 | 3159 | 3304 | 366394829 | 366394974 | 1.600000e-48 | 204.0 |
18 | TraesCS3D01G205000 | chrUn | 79.872 | 780 | 108 | 26 | 189 | 926 | 99114626 | 99113854 | 3.010000e-145 | 525.0 |
19 | TraesCS3D01G205000 | chrUn | 87.313 | 134 | 16 | 1 | 3159 | 3291 | 369248593 | 369248460 | 5.880000e-33 | 152.0 |
20 | TraesCS3D01G205000 | chrUn | 87.313 | 134 | 16 | 1 | 3159 | 3291 | 369272300 | 369272433 | 5.880000e-33 | 152.0 |
21 | TraesCS3D01G205000 | chrUn | 87.313 | 134 | 16 | 1 | 3159 | 3291 | 466764762 | 466764895 | 5.880000e-33 | 152.0 |
22 | TraesCS3D01G205000 | chrUn | 84.354 | 147 | 22 | 1 | 3159 | 3304 | 317033098 | 317033244 | 3.540000e-30 | 143.0 |
23 | TraesCS3D01G205000 | chrUn | 85.185 | 135 | 17 | 3 | 3159 | 3291 | 7034080 | 7033947 | 5.920000e-28 | 135.0 |
24 | TraesCS3D01G205000 | chrUn | 88.034 | 117 | 10 | 4 | 3159 | 3273 | 160314036 | 160313922 | 5.920000e-28 | 135.0 |
25 | TraesCS3D01G205000 | chrUn | 88.034 | 117 | 10 | 4 | 3159 | 3273 | 160377472 | 160377358 | 5.920000e-28 | 135.0 |
26 | TraesCS3D01G205000 | chrUn | 85.185 | 135 | 17 | 3 | 3159 | 3291 | 433246633 | 433246500 | 5.920000e-28 | 135.0 |
27 | TraesCS3D01G205000 | chrUn | 84.444 | 135 | 18 | 3 | 3159 | 3291 | 117232697 | 117232564 | 2.760000e-26 | 130.0 |
28 | TraesCS3D01G205000 | chrUn | 84.444 | 135 | 18 | 3 | 3159 | 3291 | 117241737 | 117241604 | 2.760000e-26 | 130.0 |
29 | TraesCS3D01G205000 | chrUn | 84.444 | 135 | 18 | 3 | 3159 | 3291 | 153920692 | 153920825 | 2.760000e-26 | 130.0 |
30 | TraesCS3D01G205000 | chrUn | 82.667 | 150 | 18 | 5 | 3159 | 3301 | 85633699 | 85633847 | 3.560000e-25 | 126.0 |
31 | TraesCS3D01G205000 | chrUn | 91.111 | 90 | 6 | 2 | 3076 | 3165 | 285334216 | 285334303 | 1.660000e-23 | 121.0 |
32 | TraesCS3D01G205000 | chrUn | 90.110 | 91 | 5 | 4 | 3076 | 3165 | 8002463 | 8002376 | 7.710000e-22 | 115.0 |
33 | TraesCS3D01G205000 | chrUn | 89.362 | 94 | 7 | 3 | 3072 | 3165 | 296004041 | 296004131 | 7.710000e-22 | 115.0 |
34 | TraesCS3D01G205000 | chrUn | 90.000 | 90 | 7 | 2 | 3076 | 3165 | 319380225 | 319380138 | 7.710000e-22 | 115.0 |
35 | TraesCS3D01G205000 | chrUn | 90.000 | 90 | 7 | 2 | 3076 | 3165 | 319394994 | 319395081 | 7.710000e-22 | 115.0 |
36 | TraesCS3D01G205000 | chrUn | 90.110 | 91 | 5 | 2 | 3076 | 3165 | 366129361 | 366129274 | 7.710000e-22 | 115.0 |
37 | TraesCS3D01G205000 | chrUn | 90.110 | 91 | 5 | 2 | 3076 | 3165 | 377362303 | 377362390 | 7.710000e-22 | 115.0 |
38 | TraesCS3D01G205000 | chrUn | 90.000 | 90 | 7 | 2 | 3076 | 3165 | 463652094 | 463652007 | 7.710000e-22 | 115.0 |
39 | TraesCS3D01G205000 | chrUn | 90.698 | 86 | 7 | 1 | 3076 | 3161 | 319984023 | 319983939 | 2.770000e-21 | 113.0 |
40 | TraesCS3D01G205000 | chrUn | 88.421 | 95 | 7 | 4 | 3072 | 3165 | 201809575 | 201809666 | 9.980000e-21 | 111.0 |
41 | TraesCS3D01G205000 | chr2A | 81.596 | 614 | 93 | 13 | 189 | 788 | 678549237 | 678549844 | 1.100000e-134 | 490.0 |
42 | TraesCS3D01G205000 | chr4B | 79.221 | 770 | 108 | 24 | 211 | 934 | 632866986 | 632867749 | 3.950000e-134 | 488.0 |
43 | TraesCS3D01G205000 | chr4B | 90.476 | 147 | 13 | 1 | 3159 | 3304 | 641870086 | 641870232 | 3.460000e-45 | 193.0 |
44 | TraesCS3D01G205000 | chr4B | 88.889 | 144 | 14 | 2 | 3159 | 3301 | 47659559 | 47659701 | 3.490000e-40 | 176.0 |
45 | TraesCS3D01G205000 | chr4B | 89.691 | 97 | 10 | 0 | 3306 | 3402 | 47672745 | 47672841 | 1.280000e-24 | 124.0 |
46 | TraesCS3D01G205000 | chr4B | 90.426 | 94 | 8 | 1 | 3072 | 3165 | 271395032 | 271395124 | 4.610000e-24 | 122.0 |
47 | TraesCS3D01G205000 | chr4B | 91.209 | 91 | 4 | 4 | 3076 | 3165 | 243327650 | 243327737 | 1.660000e-23 | 121.0 |
48 | TraesCS3D01G205000 | chr4B | 91.111 | 90 | 5 | 3 | 3076 | 3165 | 163104961 | 163104875 | 5.960000e-23 | 119.0 |
49 | TraesCS3D01G205000 | chr4B | 90.323 | 93 | 6 | 3 | 3072 | 3164 | 570637705 | 570637616 | 5.960000e-23 | 119.0 |
50 | TraesCS3D01G205000 | chr4B | 89.474 | 95 | 6 | 4 | 3072 | 3165 | 5593136 | 5593045 | 2.140000e-22 | 117.0 |
51 | TraesCS3D01G205000 | chr4B | 89.474 | 95 | 6 | 2 | 3072 | 3165 | 380663475 | 380663384 | 2.140000e-22 | 117.0 |
52 | TraesCS3D01G205000 | chr5B | 78.636 | 777 | 119 | 30 | 195 | 934 | 592364309 | 592363543 | 3.970000e-129 | 472.0 |
53 | TraesCS3D01G205000 | chr5B | 90.604 | 149 | 10 | 4 | 2924 | 3071 | 256290808 | 256290663 | 9.630000e-46 | 195.0 |
54 | TraesCS3D01G205000 | chr5B | 90.604 | 149 | 10 | 4 | 2924 | 3071 | 517278759 | 517278904 | 9.630000e-46 | 195.0 |
55 | TraesCS3D01G205000 | chr5B | 88.535 | 157 | 14 | 4 | 36 | 190 | 70101886 | 70102040 | 1.610000e-43 | 187.0 |
56 | TraesCS3D01G205000 | chr5B | 89.865 | 148 | 11 | 4 | 3159 | 3304 | 108471666 | 108471811 | 1.610000e-43 | 187.0 |
57 | TraesCS3D01G205000 | chr5B | 91.489 | 94 | 5 | 3 | 3072 | 3165 | 517278818 | 517278908 | 3.560000e-25 | 126.0 |
58 | TraesCS3D01G205000 | chr5B | 90.526 | 95 | 6 | 3 | 3071 | 3165 | 423721460 | 423721369 | 4.610000e-24 | 122.0 |
59 | TraesCS3D01G205000 | chr5B | 90.426 | 94 | 6 | 3 | 3072 | 3165 | 256290749 | 256290659 | 1.660000e-23 | 121.0 |
60 | TraesCS3D01G205000 | chr5B | 91.765 | 85 | 7 | 0 | 3072 | 3156 | 364991941 | 364992025 | 5.960000e-23 | 119.0 |
61 | TraesCS3D01G205000 | chr1D | 79.667 | 600 | 96 | 11 | 195 | 782 | 25107807 | 25108392 | 3.160000e-110 | 409.0 |
62 | TraesCS3D01G205000 | chr1D | 91.156 | 147 | 12 | 1 | 3159 | 3304 | 61827197 | 61827051 | 7.450000e-47 | 198.0 |
63 | TraesCS3D01G205000 | chr1D | 90.196 | 153 | 10 | 5 | 2921 | 3071 | 290601079 | 290600930 | 9.630000e-46 | 195.0 |
64 | TraesCS3D01G205000 | chr1D | 90.476 | 147 | 10 | 2 | 3159 | 3304 | 354773501 | 354773644 | 1.250000e-44 | 191.0 |
65 | TraesCS3D01G205000 | chr1D | 88.961 | 154 | 12 | 5 | 2920 | 3071 | 139111920 | 139111770 | 5.800000e-43 | 185.0 |
66 | TraesCS3D01G205000 | chr1D | 89.116 | 147 | 10 | 5 | 3159 | 3303 | 2195338 | 2195480 | 9.700000e-41 | 178.0 |
67 | TraesCS3D01G205000 | chr1D | 89.437 | 142 | 14 | 1 | 3159 | 3299 | 237140078 | 237139937 | 9.700000e-41 | 178.0 |
68 | TraesCS3D01G205000 | chr1D | 88.000 | 150 | 14 | 2 | 3159 | 3304 | 180828874 | 180828725 | 1.250000e-39 | 174.0 |
69 | TraesCS3D01G205000 | chr1D | 87.671 | 146 | 15 | 3 | 3159 | 3302 | 229542767 | 229542623 | 2.100000e-37 | 167.0 |
70 | TraesCS3D01G205000 | chr1D | 86.897 | 145 | 18 | 1 | 3162 | 3305 | 449581158 | 449581014 | 9.770000e-36 | 161.0 |
71 | TraesCS3D01G205000 | chr1D | 92.857 | 98 | 7 | 0 | 3305 | 3402 | 162726555 | 162726458 | 3.540000e-30 | 143.0 |
72 | TraesCS3D01G205000 | chr1D | 92.857 | 98 | 7 | 0 | 3305 | 3402 | 341022448 | 341022545 | 3.540000e-30 | 143.0 |
73 | TraesCS3D01G205000 | chr1D | 91.837 | 98 | 8 | 0 | 3305 | 3402 | 109158942 | 109158845 | 1.650000e-28 | 137.0 |
74 | TraesCS3D01G205000 | chr1D | 90.909 | 99 | 5 | 4 | 3306 | 3402 | 198620349 | 198620445 | 2.760000e-26 | 130.0 |
75 | TraesCS3D01G205000 | chr1D | 89.362 | 94 | 9 | 1 | 3072 | 3165 | 246727826 | 246727734 | 2.140000e-22 | 117.0 |
76 | TraesCS3D01G205000 | chr1D | 88.298 | 94 | 11 | 0 | 3309 | 3402 | 422863640 | 422863733 | 2.770000e-21 | 113.0 |
77 | TraesCS3D01G205000 | chr2B | 79.100 | 622 | 81 | 19 | 347 | 933 | 767966628 | 767966021 | 1.920000e-102 | 383.0 |
78 | TraesCS3D01G205000 | chr2B | 90.604 | 149 | 10 | 4 | 2924 | 3071 | 562774014 | 562774159 | 9.630000e-46 | 195.0 |
79 | TraesCS3D01G205000 | chr2B | 83.133 | 166 | 22 | 4 | 26 | 190 | 425006897 | 425007057 | 2.740000e-31 | 147.0 |
80 | TraesCS3D01G205000 | chr5A | 88.854 | 314 | 27 | 8 | 2616 | 2923 | 137312484 | 137312173 | 2.480000e-101 | 379.0 |
81 | TraesCS3D01G205000 | chr5A | 88.608 | 316 | 28 | 8 | 2613 | 2923 | 363546929 | 363547241 | 8.910000e-101 | 377.0 |
82 | TraesCS3D01G205000 | chr5A | 100.000 | 29 | 0 | 0 | 904 | 932 | 619603677 | 619603705 | 2.000000e-03 | 54.7 |
83 | TraesCS3D01G205000 | chr1A | 88.746 | 311 | 27 | 6 | 2616 | 2923 | 208153192 | 208152887 | 1.150000e-99 | 374.0 |
84 | TraesCS3D01G205000 | chr1A | 88.571 | 315 | 27 | 9 | 2616 | 2923 | 339900469 | 339900157 | 1.150000e-99 | 374.0 |
85 | TraesCS3D01G205000 | chr1A | 90.541 | 148 | 12 | 2 | 3159 | 3305 | 538711794 | 538711648 | 9.630000e-46 | 195.0 |
86 | TraesCS3D01G205000 | chr1A | 89.189 | 148 | 12 | 4 | 3159 | 3304 | 49236753 | 49236898 | 7.500000e-42 | 182.0 |
87 | TraesCS3D01G205000 | chr4A | 88.125 | 320 | 28 | 10 | 2611 | 2923 | 570374391 | 570374707 | 4.150000e-99 | 372.0 |
88 | TraesCS3D01G205000 | chr4A | 91.156 | 147 | 12 | 1 | 3159 | 3304 | 105424227 | 105424081 | 7.450000e-47 | 198.0 |
89 | TraesCS3D01G205000 | chr1B | 80.000 | 480 | 72 | 12 | 321 | 788 | 40392582 | 40393049 | 1.960000e-87 | 333.0 |
90 | TraesCS3D01G205000 | chr1B | 91.111 | 90 | 8 | 0 | 3076 | 3165 | 196821065 | 196821154 | 4.610000e-24 | 122.0 |
91 | TraesCS3D01G205000 | chr1B | 90.426 | 94 | 6 | 2 | 3072 | 3165 | 303471314 | 303471224 | 1.660000e-23 | 121.0 |
92 | TraesCS3D01G205000 | chr1B | 90.426 | 94 | 6 | 3 | 3072 | 3165 | 313425161 | 313425251 | 1.660000e-23 | 121.0 |
93 | TraesCS3D01G205000 | chr2D | 90.533 | 169 | 14 | 2 | 23 | 190 | 472483377 | 472483544 | 4.420000e-54 | 222.0 |
94 | TraesCS3D01G205000 | chr2D | 91.216 | 148 | 10 | 3 | 3159 | 3304 | 67954398 | 67954544 | 7.450000e-47 | 198.0 |
95 | TraesCS3D01G205000 | chr2D | 93.814 | 97 | 5 | 1 | 3305 | 3401 | 175881554 | 175881459 | 9.840000e-31 | 145.0 |
96 | TraesCS3D01G205000 | chr2D | 90.426 | 94 | 8 | 1 | 3072 | 3165 | 9397732 | 9397824 | 4.610000e-24 | 122.0 |
97 | TraesCS3D01G205000 | chr7A | 91.156 | 147 | 12 | 1 | 3159 | 3304 | 407903835 | 407903689 | 7.450000e-47 | 198.0 |
98 | TraesCS3D01G205000 | chr7B | 90.604 | 149 | 10 | 4 | 2924 | 3071 | 227843418 | 227843563 | 9.630000e-46 | 195.0 |
99 | TraesCS3D01G205000 | chr7B | 92.784 | 97 | 7 | 0 | 3305 | 3401 | 270549965 | 270549869 | 1.270000e-29 | 141.0 |
100 | TraesCS3D01G205000 | chr7B | 90.426 | 94 | 8 | 1 | 3072 | 3165 | 632533367 | 632533459 | 4.610000e-24 | 122.0 |
101 | TraesCS3D01G205000 | chr7B | 90.426 | 94 | 6 | 3 | 3072 | 3165 | 227843477 | 227843567 | 1.660000e-23 | 121.0 |
102 | TraesCS3D01G205000 | chr5D | 91.096 | 146 | 10 | 3 | 3159 | 3302 | 95059103 | 95058959 | 9.630000e-46 | 195.0 |
103 | TraesCS3D01G205000 | chr5D | 89.189 | 148 | 14 | 2 | 3159 | 3305 | 331066941 | 331066795 | 2.090000e-42 | 183.0 |
104 | TraesCS3D01G205000 | chr5D | 91.111 | 90 | 8 | 0 | 3076 | 3165 | 192576874 | 192576785 | 4.610000e-24 | 122.0 |
105 | TraesCS3D01G205000 | chr5D | 91.111 | 90 | 8 | 0 | 3076 | 3165 | 192598061 | 192597972 | 4.610000e-24 | 122.0 |
106 | TraesCS3D01G205000 | chr5D | 91.111 | 90 | 7 | 1 | 3076 | 3165 | 418344807 | 418344895 | 1.660000e-23 | 121.0 |
107 | TraesCS3D01G205000 | chr6B | 89.542 | 153 | 12 | 4 | 2920 | 3071 | 217118510 | 217118659 | 1.250000e-44 | 191.0 |
108 | TraesCS3D01G205000 | chr6B | 92.857 | 98 | 7 | 0 | 3305 | 3402 | 331125348 | 331125251 | 3.540000e-30 | 143.0 |
109 | TraesCS3D01G205000 | chr6B | 90.526 | 95 | 5 | 2 | 3072 | 3165 | 439358150 | 439358241 | 4.610000e-24 | 122.0 |
110 | TraesCS3D01G205000 | chr4D | 89.796 | 147 | 14 | 1 | 3159 | 3304 | 101428769 | 101428623 | 1.610000e-43 | 187.0 |
111 | TraesCS3D01G205000 | chr4D | 87.770 | 139 | 13 | 4 | 3159 | 3295 | 344353117 | 344353253 | 3.510000e-35 | 159.0 |
112 | TraesCS3D01G205000 | chr4D | 87.313 | 134 | 16 | 1 | 3159 | 3291 | 325326838 | 325326971 | 5.880000e-33 | 152.0 |
113 | TraesCS3D01G205000 | chr4D | 87.407 | 135 | 13 | 4 | 3159 | 3290 | 478218351 | 478218218 | 5.880000e-33 | 152.0 |
114 | TraesCS3D01G205000 | chr4D | 86.331 | 139 | 17 | 2 | 3159 | 3296 | 172120997 | 172121134 | 2.110000e-32 | 150.0 |
115 | TraesCS3D01G205000 | chr4D | 90.816 | 98 | 9 | 0 | 3305 | 3402 | 121797079 | 121796982 | 7.660000e-27 | 132.0 |
116 | TraesCS3D01G205000 | chr4D | 90.000 | 90 | 9 | 0 | 3076 | 3165 | 137901134 | 137901223 | 2.140000e-22 | 117.0 |
117 | TraesCS3D01G205000 | chr4D | 89.474 | 95 | 6 | 4 | 3310 | 3402 | 277310317 | 277310225 | 2.140000e-22 | 117.0 |
118 | TraesCS3D01G205000 | chr4D | 93.590 | 78 | 5 | 0 | 3324 | 3401 | 282229327 | 282229250 | 2.140000e-22 | 117.0 |
119 | TraesCS3D01G205000 | chr4D | 89.474 | 95 | 6 | 4 | 3072 | 3165 | 378196112 | 378196021 | 2.140000e-22 | 117.0 |
120 | TraesCS3D01G205000 | chr4D | 89.362 | 94 | 7 | 3 | 3072 | 3165 | 150023824 | 150023734 | 7.710000e-22 | 115.0 |
121 | TraesCS3D01G205000 | chr4D | 89.362 | 94 | 7 | 3 | 3072 | 3165 | 296324530 | 296324440 | 7.710000e-22 | 115.0 |
122 | TraesCS3D01G205000 | chr4D | 95.385 | 65 | 3 | 0 | 3338 | 3402 | 193603642 | 193603578 | 1.670000e-18 | 104.0 |
123 | TraesCS3D01G205000 | chr6D | 87.755 | 147 | 17 | 1 | 3159 | 3304 | 262011837 | 262011691 | 1.620000e-38 | 171.0 |
124 | TraesCS3D01G205000 | chr6D | 85.811 | 148 | 18 | 3 | 3159 | 3304 | 70529033 | 70528887 | 1.630000e-33 | 154.0 |
125 | TraesCS3D01G205000 | chr6D | 87.597 | 129 | 15 | 1 | 3159 | 3286 | 135015429 | 135015301 | 7.610000e-32 | 148.0 |
126 | TraesCS3D01G205000 | chr6D | 86.429 | 140 | 14 | 5 | 3159 | 3294 | 199763276 | 199763138 | 7.610000e-32 | 148.0 |
127 | TraesCS3D01G205000 | chr6D | 86.667 | 135 | 13 | 2 | 3159 | 3290 | 305350579 | 305350447 | 9.840000e-31 | 145.0 |
128 | TraesCS3D01G205000 | chr6D | 84.828 | 145 | 17 | 3 | 3163 | 3304 | 284816134 | 284815992 | 1.270000e-29 | 141.0 |
129 | TraesCS3D01G205000 | chr6D | 91.837 | 98 | 7 | 1 | 3305 | 3402 | 323151291 | 323151387 | 5.920000e-28 | 135.0 |
130 | TraesCS3D01G205000 | chr6D | 88.776 | 98 | 10 | 1 | 3305 | 3401 | 161252213 | 161252310 | 5.960000e-23 | 119.0 |
131 | TraesCS3D01G205000 | chr6D | 90.323 | 93 | 6 | 3 | 3072 | 3164 | 169515862 | 169515773 | 5.960000e-23 | 119.0 |
132 | TraesCS3D01G205000 | chr6D | 89.362 | 94 | 7 | 3 | 3072 | 3165 | 304362496 | 304362406 | 7.710000e-22 | 115.0 |
133 | TraesCS3D01G205000 | chr6D | 89.362 | 94 | 7 | 3 | 3072 | 3165 | 325554938 | 325555028 | 7.710000e-22 | 115.0 |
134 | TraesCS3D01G205000 | chr6D | 89.362 | 94 | 7 | 3 | 3072 | 3165 | 397615965 | 397616055 | 7.710000e-22 | 115.0 |
135 | TraesCS3D01G205000 | chr6D | 96.923 | 65 | 2 | 0 | 3338 | 3402 | 159604504 | 159604568 | 3.590000e-20 | 110.0 |
136 | TraesCS3D01G205000 | chr6D | 85.714 | 98 | 14 | 0 | 3305 | 3402 | 305350065 | 305349968 | 1.670000e-18 | 104.0 |
137 | TraesCS3D01G205000 | chr6D | 95.312 | 64 | 3 | 0 | 3338 | 3401 | 273945800 | 273945863 | 6.010000e-18 | 102.0 |
138 | TraesCS3D01G205000 | chr6D | 95.312 | 64 | 3 | 0 | 3338 | 3401 | 273970490 | 273970553 | 6.010000e-18 | 102.0 |
139 | TraesCS3D01G205000 | chr6D | 92.188 | 64 | 5 | 0 | 3338 | 3401 | 16571022 | 16570959 | 1.300000e-14 | 91.6 |
140 | TraesCS3D01G205000 | chr7D | 93.878 | 98 | 6 | 0 | 3305 | 3402 | 71879067 | 71878970 | 7.610000e-32 | 148.0 |
141 | TraesCS3D01G205000 | chr7D | 93.878 | 98 | 6 | 0 | 3305 | 3402 | 379762893 | 379762990 | 7.610000e-32 | 148.0 |
142 | TraesCS3D01G205000 | chr7D | 92.473 | 93 | 7 | 0 | 3309 | 3401 | 432196100 | 432196008 | 2.130000e-27 | 134.0 |
143 | TraesCS3D01G205000 | chr6A | 91.304 | 92 | 8 | 0 | 3305 | 3396 | 344031921 | 344031830 | 3.560000e-25 | 126.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G205000 | chr3D | 259433240 | 259436641 | 3401 | False | 3223.0 | 6283 | 99.450500 | 1 | 3402 | 2 | chr3D.!!$F2 | 3401 |
1 | TraesCS3D01G205000 | chr3D | 498834803 | 498835361 | 558 | False | 368.0 | 368 | 79.756000 | 399 | 934 | 1 | chr3D.!!$F1 | 535 |
2 | TraesCS3D01G205000 | chr3A | 354850039 | 354853621 | 3582 | True | 1271.0 | 3509 | 95.629667 | 938 | 3402 | 3 | chr3A.!!$R2 | 2464 |
3 | TraesCS3D01G205000 | chr3A | 354859260 | 354859870 | 610 | True | 726.0 | 726 | 88.350000 | 340 | 946 | 1 | chr3A.!!$R1 | 606 |
4 | TraesCS3D01G205000 | chr3B | 366392613 | 366394974 | 2361 | False | 1844.5 | 3485 | 94.213000 | 966 | 3304 | 2 | chr3B.!!$F2 | 2338 |
5 | TraesCS3D01G205000 | chrUn | 99113854 | 99114626 | 772 | True | 525.0 | 525 | 79.872000 | 189 | 926 | 1 | chrUn.!!$R3 | 737 |
6 | TraesCS3D01G205000 | chr2A | 678549237 | 678549844 | 607 | False | 490.0 | 490 | 81.596000 | 189 | 788 | 1 | chr2A.!!$F1 | 599 |
7 | TraesCS3D01G205000 | chr4B | 632866986 | 632867749 | 763 | False | 488.0 | 488 | 79.221000 | 211 | 934 | 1 | chr4B.!!$F5 | 723 |
8 | TraesCS3D01G205000 | chr5B | 592363543 | 592364309 | 766 | True | 472.0 | 472 | 78.636000 | 195 | 934 | 1 | chr5B.!!$R2 | 739 |
9 | TraesCS3D01G205000 | chr1D | 25107807 | 25108392 | 585 | False | 409.0 | 409 | 79.667000 | 195 | 782 | 1 | chr1D.!!$F2 | 587 |
10 | TraesCS3D01G205000 | chr2B | 767966021 | 767966628 | 607 | True | 383.0 | 383 | 79.100000 | 347 | 933 | 1 | chr2B.!!$R1 | 586 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
186 | 187 | 0.033504 | TCACCACAAGTTCTCGAGCC | 59.966 | 55.0 | 7.81 | 0.13 | 0.00 | 4.70 | F |
751 | 807 | 0.034059 | CCTTGCTTGGACTCGACACT | 59.966 | 55.0 | 0.00 | 0.00 | 0.00 | 3.55 | F |
1579 | 1689 | 0.178767 | CCAAGGAGGACATCGATGCA | 59.821 | 55.0 | 25.11 | 0.00 | 41.22 | 3.96 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1962 | 2073 | 0.107897 | TGGGATGTCCATTTCGGTCG | 60.108 | 55.0 | 0.86 | 0.00 | 41.46 | 4.79 | R |
2352 | 2464 | 6.421377 | TTCAAAAGTCATGTACCGATCATG | 57.579 | 37.5 | 0.00 | 7.69 | 42.53 | 3.07 | R |
3283 | 3543 | 0.396435 | CCCTATACCCGATTGCTGCA | 59.604 | 55.0 | 0.00 | 0.00 | 0.00 | 4.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 3.891422 | TTTCATGCAATGTTCCCCATC | 57.109 | 42.857 | 0.00 | 0.00 | 46.80 | 3.51 |
21 | 22 | 2.528673 | TCATGCAATGTTCCCCATCA | 57.471 | 45.000 | 0.00 | 0.00 | 46.80 | 3.07 |
22 | 23 | 2.380941 | TCATGCAATGTTCCCCATCAG | 58.619 | 47.619 | 0.00 | 0.00 | 46.80 | 2.90 |
23 | 24 | 1.117150 | ATGCAATGTTCCCCATCAGC | 58.883 | 50.000 | 0.00 | 0.00 | 35.92 | 4.26 |
24 | 25 | 0.251698 | TGCAATGTTCCCCATCAGCA | 60.252 | 50.000 | 0.00 | 0.00 | 40.24 | 4.41 |
25 | 26 | 0.896923 | GCAATGTTCCCCATCAGCAA | 59.103 | 50.000 | 0.00 | 0.00 | 35.62 | 3.91 |
26 | 27 | 1.404583 | GCAATGTTCCCCATCAGCAAC | 60.405 | 52.381 | 0.00 | 0.00 | 35.62 | 4.17 |
27 | 28 | 1.205417 | CAATGTTCCCCATCAGCAACC | 59.795 | 52.381 | 0.00 | 0.00 | 31.75 | 3.77 |
28 | 29 | 0.324645 | ATGTTCCCCATCAGCAACCC | 60.325 | 55.000 | 0.00 | 0.00 | 0.00 | 4.11 |
29 | 30 | 1.682344 | GTTCCCCATCAGCAACCCC | 60.682 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
30 | 31 | 1.856873 | TTCCCCATCAGCAACCCCT | 60.857 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
31 | 32 | 1.863155 | TTCCCCATCAGCAACCCCTC | 61.863 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
32 | 33 | 2.311854 | CCCCATCAGCAACCCCTCT | 61.312 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
33 | 34 | 1.225704 | CCCATCAGCAACCCCTCTC | 59.774 | 63.158 | 0.00 | 0.00 | 0.00 | 3.20 |
34 | 35 | 1.153289 | CCATCAGCAACCCCTCTCG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
35 | 36 | 1.153289 | CATCAGCAACCCCTCTCGG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
36 | 37 | 1.613630 | ATCAGCAACCCCTCTCGGT | 60.614 | 57.895 | 0.00 | 0.00 | 37.93 | 4.69 |
38 | 39 | 1.073199 | CAGCAACCCCTCTCGGTTT | 59.927 | 57.895 | 0.00 | 0.00 | 43.88 | 3.27 |
39 | 40 | 0.955919 | CAGCAACCCCTCTCGGTTTC | 60.956 | 60.000 | 0.00 | 0.00 | 43.88 | 2.78 |
40 | 41 | 1.674651 | GCAACCCCTCTCGGTTTCC | 60.675 | 63.158 | 0.00 | 0.00 | 43.88 | 3.13 |
41 | 42 | 2.067197 | CAACCCCTCTCGGTTTCCT | 58.933 | 57.895 | 0.00 | 0.00 | 43.88 | 3.36 |
42 | 43 | 0.400594 | CAACCCCTCTCGGTTTCCTT | 59.599 | 55.000 | 0.00 | 0.00 | 43.88 | 3.36 |
43 | 44 | 0.691332 | AACCCCTCTCGGTTTCCTTC | 59.309 | 55.000 | 0.00 | 0.00 | 43.88 | 3.46 |
44 | 45 | 1.199425 | ACCCCTCTCGGTTTCCTTCC | 61.199 | 60.000 | 0.00 | 0.00 | 29.19 | 3.46 |
45 | 46 | 1.198759 | CCCCTCTCGGTTTCCTTCCA | 61.199 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
46 | 47 | 0.912486 | CCCTCTCGGTTTCCTTCCAT | 59.088 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
47 | 48 | 2.116238 | CCCTCTCGGTTTCCTTCCATA | 58.884 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
48 | 49 | 2.504175 | CCCTCTCGGTTTCCTTCCATAA | 59.496 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
49 | 50 | 3.136626 | CCCTCTCGGTTTCCTTCCATAAT | 59.863 | 47.826 | 0.00 | 0.00 | 0.00 | 1.28 |
50 | 51 | 4.385310 | CCCTCTCGGTTTCCTTCCATAATT | 60.385 | 45.833 | 0.00 | 0.00 | 0.00 | 1.40 |
51 | 52 | 5.193679 | CCTCTCGGTTTCCTTCCATAATTT | 58.806 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
52 | 53 | 6.354130 | CCTCTCGGTTTCCTTCCATAATTTA | 58.646 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
53 | 54 | 6.260271 | CCTCTCGGTTTCCTTCCATAATTTAC | 59.740 | 42.308 | 0.00 | 0.00 | 0.00 | 2.01 |
54 | 55 | 6.713276 | TCTCGGTTTCCTTCCATAATTTACA | 58.287 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
55 | 56 | 7.343357 | TCTCGGTTTCCTTCCATAATTTACAT | 58.657 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
56 | 57 | 7.832187 | TCTCGGTTTCCTTCCATAATTTACATT | 59.168 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
57 | 58 | 8.356000 | TCGGTTTCCTTCCATAATTTACATTT | 57.644 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
58 | 59 | 8.463607 | TCGGTTTCCTTCCATAATTTACATTTC | 58.536 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
59 | 60 | 7.704899 | CGGTTTCCTTCCATAATTTACATTTCC | 59.295 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
60 | 61 | 8.758829 | GGTTTCCTTCCATAATTTACATTTCCT | 58.241 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
61 | 62 | 9.586435 | GTTTCCTTCCATAATTTACATTTCCTG | 57.414 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
62 | 63 | 7.346751 | TCCTTCCATAATTTACATTTCCTGC | 57.653 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
63 | 64 | 6.323739 | TCCTTCCATAATTTACATTTCCTGCC | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
64 | 65 | 6.098124 | CCTTCCATAATTTACATTTCCTGCCA | 59.902 | 38.462 | 0.00 | 0.00 | 0.00 | 4.92 |
65 | 66 | 7.364585 | CCTTCCATAATTTACATTTCCTGCCAA | 60.365 | 37.037 | 0.00 | 0.00 | 0.00 | 4.52 |
66 | 67 | 7.487822 | TCCATAATTTACATTTCCTGCCAAA | 57.512 | 32.000 | 0.00 | 0.00 | 0.00 | 3.28 |
67 | 68 | 7.327214 | TCCATAATTTACATTTCCTGCCAAAC | 58.673 | 34.615 | 0.00 | 0.00 | 0.00 | 2.93 |
68 | 69 | 7.038729 | TCCATAATTTACATTTCCTGCCAAACA | 60.039 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
69 | 70 | 7.769970 | CCATAATTTACATTTCCTGCCAAACAT | 59.230 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
70 | 71 | 9.165035 | CATAATTTACATTTCCTGCCAAACATT | 57.835 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
71 | 72 | 7.437793 | AATTTACATTTCCTGCCAAACATTG | 57.562 | 32.000 | 0.00 | 0.00 | 0.00 | 2.82 |
88 | 89 | 8.248117 | CAAACATTGGAAAATGGATCTTCTTC | 57.752 | 34.615 | 3.70 | 0.00 | 34.56 | 2.87 |
89 | 90 | 7.787623 | AACATTGGAAAATGGATCTTCTTCT | 57.212 | 32.000 | 3.70 | 0.00 | 34.56 | 2.85 |
90 | 91 | 7.401955 | ACATTGGAAAATGGATCTTCTTCTC | 57.598 | 36.000 | 3.70 | 0.00 | 34.56 | 2.87 |
91 | 92 | 7.180663 | ACATTGGAAAATGGATCTTCTTCTCT | 58.819 | 34.615 | 3.70 | 0.00 | 34.56 | 3.10 |
92 | 93 | 7.673082 | ACATTGGAAAATGGATCTTCTTCTCTT | 59.327 | 33.333 | 3.70 | 0.00 | 34.56 | 2.85 |
93 | 94 | 8.529476 | CATTGGAAAATGGATCTTCTTCTCTTT | 58.471 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
94 | 95 | 7.693969 | TGGAAAATGGATCTTCTTCTCTTTC | 57.306 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
95 | 96 | 6.372659 | TGGAAAATGGATCTTCTTCTCTTTCG | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
96 | 97 | 6.595716 | GGAAAATGGATCTTCTTCTCTTTCGA | 59.404 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
97 | 98 | 7.201600 | GGAAAATGGATCTTCTTCTCTTTCGAG | 60.202 | 40.741 | 0.00 | 0.00 | 38.67 | 4.04 |
98 | 99 | 4.727507 | TGGATCTTCTTCTCTTTCGAGG | 57.272 | 45.455 | 0.00 | 0.00 | 37.86 | 4.63 |
99 | 100 | 3.449018 | TGGATCTTCTTCTCTTTCGAGGG | 59.551 | 47.826 | 0.00 | 0.00 | 37.86 | 4.30 |
100 | 101 | 3.702045 | GGATCTTCTTCTCTTTCGAGGGA | 59.298 | 47.826 | 0.00 | 0.00 | 37.86 | 4.20 |
101 | 102 | 4.343814 | GGATCTTCTTCTCTTTCGAGGGAT | 59.656 | 45.833 | 0.00 | 0.00 | 37.86 | 3.85 |
102 | 103 | 5.163353 | GGATCTTCTTCTCTTTCGAGGGATT | 60.163 | 44.000 | 0.00 | 0.00 | 37.86 | 3.01 |
103 | 104 | 6.041069 | GGATCTTCTTCTCTTTCGAGGGATTA | 59.959 | 42.308 | 0.00 | 0.00 | 37.86 | 1.75 |
104 | 105 | 6.458232 | TCTTCTTCTCTTTCGAGGGATTAG | 57.542 | 41.667 | 0.00 | 0.00 | 37.86 | 1.73 |
105 | 106 | 5.952947 | TCTTCTTCTCTTTCGAGGGATTAGT | 59.047 | 40.000 | 0.00 | 0.00 | 37.86 | 2.24 |
106 | 107 | 5.584253 | TCTTCTCTTTCGAGGGATTAGTG | 57.416 | 43.478 | 0.00 | 0.00 | 37.86 | 2.74 |
107 | 108 | 5.017490 | TCTTCTCTTTCGAGGGATTAGTGT | 58.983 | 41.667 | 0.00 | 0.00 | 37.86 | 3.55 |
108 | 109 | 5.480772 | TCTTCTCTTTCGAGGGATTAGTGTT | 59.519 | 40.000 | 0.00 | 0.00 | 37.86 | 3.32 |
109 | 110 | 6.662234 | TCTTCTCTTTCGAGGGATTAGTGTTA | 59.338 | 38.462 | 0.00 | 0.00 | 37.86 | 2.41 |
110 | 111 | 6.452494 | TCTCTTTCGAGGGATTAGTGTTAG | 57.548 | 41.667 | 0.00 | 0.00 | 37.86 | 2.34 |
111 | 112 | 6.185511 | TCTCTTTCGAGGGATTAGTGTTAGA | 58.814 | 40.000 | 0.00 | 0.00 | 37.86 | 2.10 |
112 | 113 | 6.662234 | TCTCTTTCGAGGGATTAGTGTTAGAA | 59.338 | 38.462 | 0.00 | 0.00 | 37.86 | 2.10 |
113 | 114 | 7.177921 | TCTCTTTCGAGGGATTAGTGTTAGAAA | 59.822 | 37.037 | 0.00 | 0.00 | 37.86 | 2.52 |
114 | 115 | 7.848128 | TCTTTCGAGGGATTAGTGTTAGAAAT | 58.152 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
115 | 116 | 8.974238 | TCTTTCGAGGGATTAGTGTTAGAAATA | 58.026 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
116 | 117 | 9.765795 | CTTTCGAGGGATTAGTGTTAGAAATAT | 57.234 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
117 | 118 | 9.760077 | TTTCGAGGGATTAGTGTTAGAAATATC | 57.240 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
118 | 119 | 7.893658 | TCGAGGGATTAGTGTTAGAAATATCC | 58.106 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
119 | 120 | 6.807230 | CGAGGGATTAGTGTTAGAAATATCCG | 59.193 | 42.308 | 0.00 | 0.00 | 32.69 | 4.18 |
120 | 121 | 7.309012 | CGAGGGATTAGTGTTAGAAATATCCGA | 60.309 | 40.741 | 0.00 | 0.00 | 32.69 | 4.55 |
121 | 122 | 8.258850 | AGGGATTAGTGTTAGAAATATCCGAA | 57.741 | 34.615 | 0.00 | 0.00 | 32.69 | 4.30 |
122 | 123 | 8.368668 | AGGGATTAGTGTTAGAAATATCCGAAG | 58.631 | 37.037 | 0.00 | 0.00 | 32.69 | 3.79 |
123 | 124 | 8.365647 | GGGATTAGTGTTAGAAATATCCGAAGA | 58.634 | 37.037 | 0.00 | 0.00 | 32.69 | 2.87 |
124 | 125 | 9.413048 | GGATTAGTGTTAGAAATATCCGAAGAG | 57.587 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
125 | 126 | 9.968870 | GATTAGTGTTAGAAATATCCGAAGAGT | 57.031 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
138 | 139 | 8.773404 | ATATCCGAAGAGTAATAAAAATCCGG | 57.227 | 34.615 | 0.00 | 0.00 | 35.07 | 5.14 |
139 | 140 | 5.981174 | TCCGAAGAGTAATAAAAATCCGGT | 58.019 | 37.500 | 0.00 | 0.00 | 35.27 | 5.28 |
140 | 141 | 5.813672 | TCCGAAGAGTAATAAAAATCCGGTG | 59.186 | 40.000 | 0.00 | 0.00 | 35.27 | 4.94 |
141 | 142 | 5.813672 | CCGAAGAGTAATAAAAATCCGGTGA | 59.186 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
142 | 143 | 6.314400 | CCGAAGAGTAATAAAAATCCGGTGAA | 59.686 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
143 | 144 | 7.148373 | CCGAAGAGTAATAAAAATCCGGTGAAA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
144 | 145 | 8.231837 | CGAAGAGTAATAAAAATCCGGTGAAAA | 58.768 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
145 | 146 | 9.338291 | GAAGAGTAATAAAAATCCGGTGAAAAC | 57.662 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
146 | 147 | 7.823665 | AGAGTAATAAAAATCCGGTGAAAACC | 58.176 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
147 | 148 | 7.449086 | AGAGTAATAAAAATCCGGTGAAAACCA | 59.551 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
148 | 149 | 7.953752 | AGTAATAAAAATCCGGTGAAAACCAA | 58.046 | 30.769 | 0.00 | 0.00 | 0.00 | 3.67 |
149 | 150 | 8.085909 | AGTAATAAAAATCCGGTGAAAACCAAG | 58.914 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
150 | 151 | 4.746535 | AAAAATCCGGTGAAAACCAAGT | 57.253 | 36.364 | 0.00 | 0.00 | 0.00 | 3.16 |
151 | 152 | 5.855740 | AAAAATCCGGTGAAAACCAAGTA | 57.144 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
152 | 153 | 5.855740 | AAAATCCGGTGAAAACCAAGTAA | 57.144 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
153 | 154 | 5.447624 | AAATCCGGTGAAAACCAAGTAAG | 57.552 | 39.130 | 0.00 | 0.00 | 0.00 | 2.34 |
154 | 155 | 3.842007 | TCCGGTGAAAACCAAGTAAGA | 57.158 | 42.857 | 0.00 | 0.00 | 0.00 | 2.10 |
155 | 156 | 4.153673 | TCCGGTGAAAACCAAGTAAGAA | 57.846 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
156 | 157 | 4.721132 | TCCGGTGAAAACCAAGTAAGAAT | 58.279 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
157 | 158 | 4.758165 | TCCGGTGAAAACCAAGTAAGAATC | 59.242 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
158 | 159 | 4.517453 | CCGGTGAAAACCAAGTAAGAATCA | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
159 | 160 | 5.449304 | CGGTGAAAACCAAGTAAGAATCAC | 58.551 | 41.667 | 0.00 | 0.00 | 36.18 | 3.06 |
160 | 161 | 5.238650 | CGGTGAAAACCAAGTAAGAATCACT | 59.761 | 40.000 | 0.00 | 0.00 | 36.91 | 3.41 |
161 | 162 | 6.425721 | CGGTGAAAACCAAGTAAGAATCACTA | 59.574 | 38.462 | 0.00 | 0.00 | 36.91 | 2.74 |
162 | 163 | 7.360101 | CGGTGAAAACCAAGTAAGAATCACTAG | 60.360 | 40.741 | 0.00 | 0.00 | 36.91 | 2.57 |
163 | 164 | 7.094762 | GGTGAAAACCAAGTAAGAATCACTAGG | 60.095 | 40.741 | 0.00 | 0.00 | 36.91 | 3.02 |
164 | 165 | 7.660208 | GTGAAAACCAAGTAAGAATCACTAGGA | 59.340 | 37.037 | 0.00 | 0.00 | 34.58 | 2.94 |
165 | 166 | 8.215050 | TGAAAACCAAGTAAGAATCACTAGGAA | 58.785 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
166 | 167 | 8.990163 | AAAACCAAGTAAGAATCACTAGGAAA | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 3.13 |
167 | 168 | 9.588096 | AAAACCAAGTAAGAATCACTAGGAAAT | 57.412 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
168 | 169 | 8.794335 | AACCAAGTAAGAATCACTAGGAAATC | 57.206 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
169 | 170 | 7.918076 | ACCAAGTAAGAATCACTAGGAAATCA | 58.082 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
170 | 171 | 7.824779 | ACCAAGTAAGAATCACTAGGAAATCAC | 59.175 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
171 | 172 | 7.281100 | CCAAGTAAGAATCACTAGGAAATCACC | 59.719 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
172 | 173 | 7.496346 | AGTAAGAATCACTAGGAAATCACCA | 57.504 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
173 | 174 | 7.331791 | AGTAAGAATCACTAGGAAATCACCAC | 58.668 | 38.462 | 0.00 | 0.00 | 0.00 | 4.16 |
174 | 175 | 5.762179 | AGAATCACTAGGAAATCACCACA | 57.238 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
175 | 176 | 6.126863 | AGAATCACTAGGAAATCACCACAA | 57.873 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
176 | 177 | 6.176183 | AGAATCACTAGGAAATCACCACAAG | 58.824 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
177 | 178 | 4.974645 | TCACTAGGAAATCACCACAAGT | 57.025 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
178 | 179 | 5.304686 | TCACTAGGAAATCACCACAAGTT | 57.695 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
179 | 180 | 5.305585 | TCACTAGGAAATCACCACAAGTTC | 58.694 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
180 | 181 | 5.071788 | TCACTAGGAAATCACCACAAGTTCT | 59.928 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
181 | 182 | 5.409826 | CACTAGGAAATCACCACAAGTTCTC | 59.590 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
182 | 183 | 3.403038 | AGGAAATCACCACAAGTTCTCG | 58.597 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
183 | 184 | 3.071023 | AGGAAATCACCACAAGTTCTCGA | 59.929 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
184 | 185 | 3.433615 | GGAAATCACCACAAGTTCTCGAG | 59.566 | 47.826 | 5.93 | 5.93 | 0.00 | 4.04 |
185 | 186 | 2.086054 | ATCACCACAAGTTCTCGAGC | 57.914 | 50.000 | 7.81 | 0.00 | 0.00 | 5.03 |
186 | 187 | 0.033504 | TCACCACAAGTTCTCGAGCC | 59.966 | 55.000 | 7.81 | 0.13 | 0.00 | 4.70 |
187 | 188 | 0.249868 | CACCACAAGTTCTCGAGCCA | 60.250 | 55.000 | 7.81 | 0.00 | 0.00 | 4.75 |
188 | 189 | 0.687354 | ACCACAAGTTCTCGAGCCAT | 59.313 | 50.000 | 7.81 | 0.00 | 0.00 | 4.40 |
189 | 190 | 1.338200 | ACCACAAGTTCTCGAGCCATC | 60.338 | 52.381 | 7.81 | 0.00 | 0.00 | 3.51 |
221 | 222 | 1.080025 | GTGCCCGTCAGTAGTCACC | 60.080 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
227 | 228 | 1.167851 | CGTCAGTAGTCACCGGGTTA | 58.832 | 55.000 | 6.32 | 0.00 | 0.00 | 2.85 |
306 | 307 | 2.283388 | ACGCTAACCCAGACCCGA | 60.283 | 61.111 | 0.00 | 0.00 | 0.00 | 5.14 |
493 | 514 | 2.897969 | TGGTGACTCTACTTCTTGGTCC | 59.102 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
508 | 529 | 2.690881 | TCCTATGGGCGGCAAGGT | 60.691 | 61.111 | 19.27 | 2.73 | 0.00 | 3.50 |
674 | 720 | 4.794648 | GCGGTGCCTATGGGTGCA | 62.795 | 66.667 | 0.00 | 0.00 | 34.54 | 4.57 |
751 | 807 | 0.034059 | CCTTGCTTGGACTCGACACT | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
753 | 809 | 0.249868 | TTGCTTGGACTCGACACTGG | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
856 | 957 | 8.868522 | ATCCTTTGATCTGTTTTGTAAGATGA | 57.131 | 30.769 | 0.00 | 0.00 | 33.26 | 2.92 |
871 | 972 | 4.785346 | AAGATGACCTCCACAGCATAAT | 57.215 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
872 | 973 | 5.894298 | AAGATGACCTCCACAGCATAATA | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 0.98 |
873 | 974 | 5.480642 | AGATGACCTCCACAGCATAATAG | 57.519 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
874 | 975 | 5.150715 | AGATGACCTCCACAGCATAATAGA | 58.849 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
875 | 976 | 4.944619 | TGACCTCCACAGCATAATAGAG | 57.055 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
934 | 1035 | 9.280174 | CTTTATATATAAAGCGGGGTTGAAAGA | 57.720 | 33.333 | 25.10 | 0.00 | 41.69 | 2.52 |
1012 | 1113 | 2.852495 | ATAAGCCGCACACTCCACCG | 62.852 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
1135 | 1236 | 1.897802 | ACCTTCGTTGGTACTGGTAGG | 59.102 | 52.381 | 0.55 | 0.00 | 38.79 | 3.18 |
1408 | 1518 | 4.457496 | CCACAGATCGGCGTGCCT | 62.457 | 66.667 | 6.85 | 0.00 | 0.00 | 4.75 |
1579 | 1689 | 0.178767 | CCAAGGAGGACATCGATGCA | 59.821 | 55.000 | 25.11 | 0.00 | 41.22 | 3.96 |
1618 | 1728 | 7.993183 | TCCTTTGATCTTCTTGTGGGTATATTC | 59.007 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1819 | 1929 | 8.824159 | TCATATATTGCTCTCTGAAAGCTTAC | 57.176 | 34.615 | 0.00 | 0.00 | 40.50 | 2.34 |
1860 | 1970 | 5.988287 | TGGTGGAAAAGAAAGCTGAATTTT | 58.012 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1962 | 2073 | 2.228103 | GGATGTTGAGGTTTCGGGTTTC | 59.772 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2371 | 2483 | 6.403049 | TGTAACATGATCGGTACATGACTTT | 58.597 | 36.000 | 18.50 | 9.19 | 45.22 | 2.66 |
2634 | 2747 | 8.893563 | TCCTAATGTAACATCCCAAAATTCTT | 57.106 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
2788 | 2902 | 8.980610 | CAAACTTTCATACTTGCATTTTGATCA | 58.019 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
2789 | 2903 | 9.715121 | AAACTTTCATACTTGCATTTTGATCAT | 57.285 | 25.926 | 0.00 | 0.00 | 0.00 | 2.45 |
2850 | 2964 | 8.032045 | AGTGAAGATGATATGACTTCTTCCAT | 57.968 | 34.615 | 17.86 | 9.85 | 43.78 | 3.41 |
2959 | 3073 | 8.929746 | CGACTTAATCATGCACTAATCATACAT | 58.070 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2969 | 3083 | 5.513376 | CACTAATCATACATGCAAATGCGT | 58.487 | 37.500 | 0.00 | 0.00 | 45.83 | 5.24 |
3060 | 3174 | 9.561069 | ACTACAATCTTTATGTTATAAGCCAGG | 57.439 | 33.333 | 0.00 | 0.00 | 32.27 | 4.45 |
3061 | 3175 | 7.823745 | ACAATCTTTATGTTATAAGCCAGGG | 57.176 | 36.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3062 | 3176 | 7.354312 | ACAATCTTTATGTTATAAGCCAGGGT | 58.646 | 34.615 | 0.00 | 0.00 | 0.00 | 4.34 |
3063 | 3177 | 7.502561 | ACAATCTTTATGTTATAAGCCAGGGTC | 59.497 | 37.037 | 0.00 | 0.00 | 0.00 | 4.46 |
3064 | 3178 | 5.937111 | TCTTTATGTTATAAGCCAGGGTCC | 58.063 | 41.667 | 0.00 | 0.00 | 0.00 | 4.46 |
3065 | 3179 | 5.670361 | TCTTTATGTTATAAGCCAGGGTCCT | 59.330 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3066 | 3180 | 5.987019 | TTATGTTATAAGCCAGGGTCCTT | 57.013 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
3067 | 3181 | 3.644966 | TGTTATAAGCCAGGGTCCTTG | 57.355 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
3068 | 3182 | 3.186283 | TGTTATAAGCCAGGGTCCTTGA | 58.814 | 45.455 | 1.73 | 0.00 | 0.00 | 3.02 |
3069 | 3183 | 3.199946 | TGTTATAAGCCAGGGTCCTTGAG | 59.800 | 47.826 | 1.73 | 0.00 | 0.00 | 3.02 |
3070 | 3184 | 1.216990 | ATAAGCCAGGGTCCTTGAGG | 58.783 | 55.000 | 1.73 | 0.00 | 0.00 | 3.86 |
3071 | 3185 | 1.562672 | TAAGCCAGGGTCCTTGAGGC | 61.563 | 60.000 | 1.73 | 8.35 | 45.54 | 4.70 |
3072 | 3186 | 3.650950 | GCCAGGGTCCTTGAGGCA | 61.651 | 66.667 | 1.73 | 0.00 | 44.59 | 4.75 |
3073 | 3187 | 2.673523 | CCAGGGTCCTTGAGGCAG | 59.326 | 66.667 | 1.73 | 0.00 | 34.44 | 4.85 |
3074 | 3188 | 2.045536 | CAGGGTCCTTGAGGCAGC | 60.046 | 66.667 | 0.00 | 0.00 | 34.44 | 5.25 |
3075 | 3189 | 3.710722 | AGGGTCCTTGAGGCAGCG | 61.711 | 66.667 | 0.00 | 0.00 | 34.44 | 5.18 |
3076 | 3190 | 3.706373 | GGGTCCTTGAGGCAGCGA | 61.706 | 66.667 | 0.00 | 0.00 | 34.44 | 4.93 |
3077 | 3191 | 2.435059 | GGTCCTTGAGGCAGCGAC | 60.435 | 66.667 | 0.00 | 0.00 | 34.44 | 5.19 |
3078 | 3192 | 2.659610 | GTCCTTGAGGCAGCGACT | 59.340 | 61.111 | 0.00 | 0.00 | 34.44 | 4.18 |
3079 | 3193 | 1.446966 | GTCCTTGAGGCAGCGACTC | 60.447 | 63.158 | 4.68 | 4.68 | 38.37 | 3.36 |
3083 | 3197 | 4.056125 | TGAGGCAGCGACTCACGG | 62.056 | 66.667 | 9.61 | 0.00 | 43.49 | 4.94 |
3084 | 3198 | 4.803426 | GAGGCAGCGACTCACGGG | 62.803 | 72.222 | 6.55 | 0.00 | 37.69 | 5.28 |
3086 | 3200 | 4.373116 | GGCAGCGACTCACGGGAA | 62.373 | 66.667 | 0.00 | 0.00 | 42.83 | 3.97 |
3087 | 3201 | 2.811317 | GCAGCGACTCACGGGAAG | 60.811 | 66.667 | 0.00 | 0.00 | 42.83 | 3.46 |
3088 | 3202 | 2.962569 | CAGCGACTCACGGGAAGA | 59.037 | 61.111 | 0.00 | 0.00 | 42.83 | 2.87 |
3089 | 3203 | 1.513158 | CAGCGACTCACGGGAAGAT | 59.487 | 57.895 | 0.00 | 0.00 | 42.83 | 2.40 |
3090 | 3204 | 0.738975 | CAGCGACTCACGGGAAGATA | 59.261 | 55.000 | 0.00 | 0.00 | 42.83 | 1.98 |
3091 | 3205 | 1.338337 | CAGCGACTCACGGGAAGATAT | 59.662 | 52.381 | 0.00 | 0.00 | 42.83 | 1.63 |
3092 | 3206 | 1.609555 | AGCGACTCACGGGAAGATATC | 59.390 | 52.381 | 0.00 | 0.00 | 42.83 | 1.63 |
3093 | 3207 | 1.337071 | GCGACTCACGGGAAGATATCA | 59.663 | 52.381 | 5.32 | 0.00 | 42.83 | 2.15 |
3094 | 3208 | 2.859032 | GCGACTCACGGGAAGATATCAC | 60.859 | 54.545 | 5.32 | 0.00 | 42.83 | 3.06 |
3095 | 3209 | 2.357952 | CGACTCACGGGAAGATATCACA | 59.642 | 50.000 | 5.32 | 0.00 | 38.46 | 3.58 |
3096 | 3210 | 3.181490 | CGACTCACGGGAAGATATCACAA | 60.181 | 47.826 | 5.32 | 0.00 | 38.46 | 3.33 |
3097 | 3211 | 4.113354 | GACTCACGGGAAGATATCACAAC | 58.887 | 47.826 | 5.32 | 0.00 | 0.00 | 3.32 |
3098 | 3212 | 3.513912 | ACTCACGGGAAGATATCACAACA | 59.486 | 43.478 | 5.32 | 0.00 | 0.00 | 3.33 |
3099 | 3213 | 3.857052 | TCACGGGAAGATATCACAACAC | 58.143 | 45.455 | 5.32 | 0.00 | 0.00 | 3.32 |
3100 | 3214 | 3.259625 | TCACGGGAAGATATCACAACACA | 59.740 | 43.478 | 5.32 | 0.00 | 0.00 | 3.72 |
3101 | 3215 | 4.000325 | CACGGGAAGATATCACAACACAA | 59.000 | 43.478 | 5.32 | 0.00 | 0.00 | 3.33 |
3102 | 3216 | 4.000988 | ACGGGAAGATATCACAACACAAC | 58.999 | 43.478 | 5.32 | 0.00 | 0.00 | 3.32 |
3103 | 3217 | 4.253685 | CGGGAAGATATCACAACACAACT | 58.746 | 43.478 | 5.32 | 0.00 | 0.00 | 3.16 |
3104 | 3218 | 4.330074 | CGGGAAGATATCACAACACAACTC | 59.670 | 45.833 | 5.32 | 0.00 | 0.00 | 3.01 |
3105 | 3219 | 5.491982 | GGGAAGATATCACAACACAACTCT | 58.508 | 41.667 | 5.32 | 0.00 | 0.00 | 3.24 |
3106 | 3220 | 6.627287 | CGGGAAGATATCACAACACAACTCTA | 60.627 | 42.308 | 5.32 | 0.00 | 0.00 | 2.43 |
3107 | 3221 | 6.758886 | GGGAAGATATCACAACACAACTCTAG | 59.241 | 42.308 | 5.32 | 0.00 | 0.00 | 2.43 |
3108 | 3222 | 7.363880 | GGGAAGATATCACAACACAACTCTAGA | 60.364 | 40.741 | 5.32 | 0.00 | 0.00 | 2.43 |
3109 | 3223 | 7.489757 | GGAAGATATCACAACACAACTCTAGAC | 59.510 | 40.741 | 5.32 | 0.00 | 0.00 | 2.59 |
3110 | 3224 | 7.468141 | AGATATCACAACACAACTCTAGACA | 57.532 | 36.000 | 5.32 | 0.00 | 0.00 | 3.41 |
3111 | 3225 | 7.316640 | AGATATCACAACACAACTCTAGACAC | 58.683 | 38.462 | 5.32 | 0.00 | 0.00 | 3.67 |
3112 | 3226 | 4.729227 | TCACAACACAACTCTAGACACA | 57.271 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
3113 | 3227 | 5.079689 | TCACAACACAACTCTAGACACAA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
3114 | 3228 | 5.483811 | TCACAACACAACTCTAGACACAAA | 58.516 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
3115 | 3229 | 6.112734 | TCACAACACAACTCTAGACACAAAT | 58.887 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3116 | 3230 | 7.269316 | TCACAACACAACTCTAGACACAAATA | 58.731 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3117 | 3231 | 7.766738 | TCACAACACAACTCTAGACACAAATAA | 59.233 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3118 | 3232 | 8.394877 | CACAACACAACTCTAGACACAAATAAA | 58.605 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3119 | 3233 | 8.952278 | ACAACACAACTCTAGACACAAATAAAA | 58.048 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
3120 | 3234 | 9.950680 | CAACACAACTCTAGACACAAATAAAAT | 57.049 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3156 | 3270 | 5.987019 | TTATGTTATAAGCCAGGGTCCTT | 57.013 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
3165 | 3424 | 1.614824 | CAGGGTCCTTGAGGCCTCT | 60.615 | 63.158 | 32.28 | 7.74 | 33.64 | 3.69 |
3190 | 3449 | 1.930914 | TGGGAGCCTCCTAACTACTCT | 59.069 | 52.381 | 11.29 | 0.00 | 36.57 | 3.24 |
3247 | 3506 | 1.028330 | CGGGGCAGTAGTAGTCGTCA | 61.028 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3254 | 3513 | 1.811359 | AGTAGTAGTCGTCAGTGGTGC | 59.189 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
3255 | 3514 | 1.538512 | GTAGTAGTCGTCAGTGGTGCA | 59.461 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
3256 | 3515 | 1.257743 | AGTAGTCGTCAGTGGTGCAT | 58.742 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
3278 | 3538 | 1.343069 | GGCTCCTAGGATCCGTCATT | 58.657 | 55.000 | 15.82 | 0.00 | 0.00 | 2.57 |
3283 | 3543 | 4.503991 | GCTCCTAGGATCCGTCATTTGATT | 60.504 | 45.833 | 13.12 | 0.00 | 0.00 | 2.57 |
3304 | 3564 | 0.324943 | CAGCAATCGGGTATAGGGGG | 59.675 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
3382 | 4704 | 1.316651 | CACCGTAGTCCTACCTAGGC | 58.683 | 60.000 | 9.30 | 0.00 | 43.31 | 3.93 |
3388 | 4710 | 3.684981 | CGTAGTCCTACCTAGGCTCAACT | 60.685 | 52.174 | 9.30 | 10.41 | 43.31 | 3.16 |
3389 | 4711 | 2.741145 | AGTCCTACCTAGGCTCAACTG | 58.259 | 52.381 | 9.30 | 0.00 | 43.31 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 2.380941 | CTGATGGGGAACATTGCATGA | 58.619 | 47.619 | 0.00 | 0.00 | 40.72 | 3.07 |
4 | 5 | 1.117150 | GCTGATGGGGAACATTGCAT | 58.883 | 50.000 | 0.00 | 0.00 | 40.72 | 3.96 |
6 | 7 | 0.896923 | TTGCTGATGGGGAACATTGC | 59.103 | 50.000 | 0.00 | 0.00 | 40.72 | 3.56 |
7 | 8 | 1.205417 | GGTTGCTGATGGGGAACATTG | 59.795 | 52.381 | 0.00 | 0.00 | 40.72 | 2.82 |
8 | 9 | 1.560505 | GGTTGCTGATGGGGAACATT | 58.439 | 50.000 | 0.00 | 0.00 | 40.72 | 2.71 |
9 | 10 | 0.324645 | GGGTTGCTGATGGGGAACAT | 60.325 | 55.000 | 0.00 | 0.00 | 44.18 | 2.71 |
10 | 11 | 1.076549 | GGGTTGCTGATGGGGAACA | 59.923 | 57.895 | 0.00 | 0.00 | 38.89 | 3.18 |
11 | 12 | 1.682344 | GGGGTTGCTGATGGGGAAC | 60.682 | 63.158 | 0.00 | 0.00 | 36.92 | 3.62 |
12 | 13 | 1.856873 | AGGGGTTGCTGATGGGGAA | 60.857 | 57.895 | 0.00 | 0.00 | 0.00 | 3.97 |
13 | 14 | 2.204291 | AGGGGTTGCTGATGGGGA | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 4.81 |
14 | 15 | 2.276309 | GAGAGGGGTTGCTGATGGGG | 62.276 | 65.000 | 0.00 | 0.00 | 0.00 | 4.96 |
15 | 16 | 1.225704 | GAGAGGGGTTGCTGATGGG | 59.774 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
16 | 17 | 1.153289 | CGAGAGGGGTTGCTGATGG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
17 | 18 | 4.528674 | CGAGAGGGGTTGCTGATG | 57.471 | 61.111 | 0.00 | 0.00 | 0.00 | 3.07 |
29 | 30 | 6.821665 | TGTAAATTATGGAAGGAAACCGAGAG | 59.178 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
30 | 31 | 6.713276 | TGTAAATTATGGAAGGAAACCGAGA | 58.287 | 36.000 | 0.00 | 0.00 | 0.00 | 4.04 |
31 | 32 | 6.995511 | TGTAAATTATGGAAGGAAACCGAG | 57.004 | 37.500 | 0.00 | 0.00 | 0.00 | 4.63 |
32 | 33 | 7.948034 | AATGTAAATTATGGAAGGAAACCGA | 57.052 | 32.000 | 0.00 | 0.00 | 0.00 | 4.69 |
33 | 34 | 7.704899 | GGAAATGTAAATTATGGAAGGAAACCG | 59.295 | 37.037 | 0.00 | 0.00 | 0.00 | 4.44 |
34 | 35 | 8.758829 | AGGAAATGTAAATTATGGAAGGAAACC | 58.241 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
35 | 36 | 9.586435 | CAGGAAATGTAAATTATGGAAGGAAAC | 57.414 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
36 | 37 | 8.257306 | GCAGGAAATGTAAATTATGGAAGGAAA | 58.743 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
37 | 38 | 7.147742 | GGCAGGAAATGTAAATTATGGAAGGAA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
38 | 39 | 6.323739 | GGCAGGAAATGTAAATTATGGAAGGA | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
39 | 40 | 6.098124 | TGGCAGGAAATGTAAATTATGGAAGG | 59.902 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
40 | 41 | 7.111247 | TGGCAGGAAATGTAAATTATGGAAG | 57.889 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
41 | 42 | 7.487822 | TTGGCAGGAAATGTAAATTATGGAA | 57.512 | 32.000 | 0.00 | 0.00 | 0.00 | 3.53 |
42 | 43 | 7.038729 | TGTTTGGCAGGAAATGTAAATTATGGA | 60.039 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
43 | 44 | 7.102346 | TGTTTGGCAGGAAATGTAAATTATGG | 58.898 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
44 | 45 | 8.721019 | ATGTTTGGCAGGAAATGTAAATTATG | 57.279 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
45 | 46 | 9.165035 | CAATGTTTGGCAGGAAATGTAAATTAT | 57.835 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
46 | 47 | 7.605691 | CCAATGTTTGGCAGGAAATGTAAATTA | 59.394 | 33.333 | 0.00 | 0.00 | 45.17 | 1.40 |
47 | 48 | 6.430616 | CCAATGTTTGGCAGGAAATGTAAATT | 59.569 | 34.615 | 0.00 | 0.00 | 45.17 | 1.82 |
48 | 49 | 5.939296 | CCAATGTTTGGCAGGAAATGTAAAT | 59.061 | 36.000 | 0.00 | 0.00 | 45.17 | 1.40 |
49 | 50 | 5.303971 | CCAATGTTTGGCAGGAAATGTAAA | 58.696 | 37.500 | 0.00 | 0.00 | 45.17 | 2.01 |
50 | 51 | 4.892433 | CCAATGTTTGGCAGGAAATGTAA | 58.108 | 39.130 | 0.00 | 0.00 | 45.17 | 2.41 |
51 | 52 | 4.533919 | CCAATGTTTGGCAGGAAATGTA | 57.466 | 40.909 | 0.00 | 0.00 | 45.17 | 2.29 |
52 | 53 | 3.405823 | CCAATGTTTGGCAGGAAATGT | 57.594 | 42.857 | 0.00 | 0.00 | 45.17 | 2.71 |
63 | 64 | 8.092687 | AGAAGAAGATCCATTTTCCAATGTTTG | 58.907 | 33.333 | 0.00 | 0.00 | 38.58 | 2.93 |
64 | 65 | 8.198807 | AGAAGAAGATCCATTTTCCAATGTTT | 57.801 | 30.769 | 0.00 | 0.00 | 38.58 | 2.83 |
65 | 66 | 7.673082 | AGAGAAGAAGATCCATTTTCCAATGTT | 59.327 | 33.333 | 0.00 | 0.00 | 38.58 | 2.71 |
66 | 67 | 7.180663 | AGAGAAGAAGATCCATTTTCCAATGT | 58.819 | 34.615 | 0.00 | 0.00 | 38.58 | 2.71 |
67 | 68 | 7.642082 | AGAGAAGAAGATCCATTTTCCAATG | 57.358 | 36.000 | 0.00 | 0.00 | 39.79 | 2.82 |
68 | 69 | 8.661752 | AAAGAGAAGAAGATCCATTTTCCAAT | 57.338 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
69 | 70 | 7.094634 | CGAAAGAGAAGAAGATCCATTTTCCAA | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
70 | 71 | 6.372659 | CGAAAGAGAAGAAGATCCATTTTCCA | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
71 | 72 | 6.595716 | TCGAAAGAGAAGAAGATCCATTTTCC | 59.404 | 38.462 | 0.00 | 0.00 | 34.84 | 3.13 |
72 | 73 | 7.602517 | TCGAAAGAGAAGAAGATCCATTTTC | 57.397 | 36.000 | 0.00 | 0.00 | 34.84 | 2.29 |
89 | 90 | 6.845758 | TTCTAACACTAATCCCTCGAAAGA | 57.154 | 37.500 | 0.00 | 0.00 | 39.12 | 2.52 |
90 | 91 | 9.765795 | ATATTTCTAACACTAATCCCTCGAAAG | 57.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.62 |
91 | 92 | 9.760077 | GATATTTCTAACACTAATCCCTCGAAA | 57.240 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
92 | 93 | 8.365647 | GGATATTTCTAACACTAATCCCTCGAA | 58.634 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
93 | 94 | 7.309012 | CGGATATTTCTAACACTAATCCCTCGA | 60.309 | 40.741 | 0.00 | 0.00 | 0.00 | 4.04 |
94 | 95 | 6.807230 | CGGATATTTCTAACACTAATCCCTCG | 59.193 | 42.308 | 0.00 | 0.00 | 0.00 | 4.63 |
95 | 96 | 7.893658 | TCGGATATTTCTAACACTAATCCCTC | 58.106 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
96 | 97 | 7.850935 | TCGGATATTTCTAACACTAATCCCT | 57.149 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
97 | 98 | 8.365647 | TCTTCGGATATTTCTAACACTAATCCC | 58.634 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
98 | 99 | 9.413048 | CTCTTCGGATATTTCTAACACTAATCC | 57.587 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
99 | 100 | 9.968870 | ACTCTTCGGATATTTCTAACACTAATC | 57.031 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
112 | 113 | 9.216117 | CCGGATTTTTATTACTCTTCGGATATT | 57.784 | 33.333 | 0.00 | 0.00 | 36.30 | 1.28 |
113 | 114 | 8.373220 | ACCGGATTTTTATTACTCTTCGGATAT | 58.627 | 33.333 | 9.46 | 0.00 | 37.47 | 1.63 |
114 | 115 | 7.654520 | CACCGGATTTTTATTACTCTTCGGATA | 59.345 | 37.037 | 9.46 | 0.00 | 37.47 | 2.59 |
115 | 116 | 6.482308 | CACCGGATTTTTATTACTCTTCGGAT | 59.518 | 38.462 | 9.46 | 0.00 | 37.47 | 4.18 |
116 | 117 | 5.813672 | CACCGGATTTTTATTACTCTTCGGA | 59.186 | 40.000 | 9.46 | 0.00 | 37.47 | 4.55 |
117 | 118 | 5.813672 | TCACCGGATTTTTATTACTCTTCGG | 59.186 | 40.000 | 9.46 | 0.00 | 39.59 | 4.30 |
118 | 119 | 6.897259 | TCACCGGATTTTTATTACTCTTCG | 57.103 | 37.500 | 9.46 | 0.00 | 0.00 | 3.79 |
119 | 120 | 9.338291 | GTTTTCACCGGATTTTTATTACTCTTC | 57.662 | 33.333 | 9.46 | 0.00 | 0.00 | 2.87 |
120 | 121 | 8.301720 | GGTTTTCACCGGATTTTTATTACTCTT | 58.698 | 33.333 | 9.46 | 0.00 | 31.60 | 2.85 |
121 | 122 | 7.823665 | GGTTTTCACCGGATTTTTATTACTCT | 58.176 | 34.615 | 9.46 | 0.00 | 31.60 | 3.24 |
137 | 138 | 6.635030 | AGTGATTCTTACTTGGTTTTCACC | 57.365 | 37.500 | 0.00 | 0.00 | 44.56 | 4.02 |
138 | 139 | 7.660208 | TCCTAGTGATTCTTACTTGGTTTTCAC | 59.340 | 37.037 | 0.00 | 0.00 | 40.46 | 3.18 |
139 | 140 | 7.741785 | TCCTAGTGATTCTTACTTGGTTTTCA | 58.258 | 34.615 | 0.00 | 0.00 | 40.46 | 2.69 |
140 | 141 | 8.617290 | TTCCTAGTGATTCTTACTTGGTTTTC | 57.383 | 34.615 | 0.00 | 0.00 | 40.46 | 2.29 |
141 | 142 | 8.990163 | TTTCCTAGTGATTCTTACTTGGTTTT | 57.010 | 30.769 | 0.00 | 0.00 | 40.46 | 2.43 |
142 | 143 | 9.232473 | GATTTCCTAGTGATTCTTACTTGGTTT | 57.768 | 33.333 | 0.00 | 0.00 | 40.46 | 3.27 |
143 | 144 | 8.383175 | TGATTTCCTAGTGATTCTTACTTGGTT | 58.617 | 33.333 | 0.00 | 0.00 | 40.46 | 3.67 |
144 | 145 | 7.824779 | GTGATTTCCTAGTGATTCTTACTTGGT | 59.175 | 37.037 | 0.00 | 0.00 | 40.46 | 3.67 |
145 | 146 | 7.281100 | GGTGATTTCCTAGTGATTCTTACTTGG | 59.719 | 40.741 | 0.00 | 0.00 | 40.79 | 3.61 |
146 | 147 | 7.824289 | TGGTGATTTCCTAGTGATTCTTACTTG | 59.176 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
147 | 148 | 7.824779 | GTGGTGATTTCCTAGTGATTCTTACTT | 59.175 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
148 | 149 | 7.038302 | TGTGGTGATTTCCTAGTGATTCTTACT | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
149 | 150 | 7.103641 | TGTGGTGATTTCCTAGTGATTCTTAC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
150 | 151 | 7.252612 | TGTGGTGATTTCCTAGTGATTCTTA | 57.747 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
151 | 152 | 6.126863 | TGTGGTGATTTCCTAGTGATTCTT | 57.873 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
152 | 153 | 5.762179 | TGTGGTGATTTCCTAGTGATTCT | 57.238 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
153 | 154 | 5.940470 | ACTTGTGGTGATTTCCTAGTGATTC | 59.060 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
154 | 155 | 5.880901 | ACTTGTGGTGATTTCCTAGTGATT | 58.119 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
155 | 156 | 5.505181 | ACTTGTGGTGATTTCCTAGTGAT | 57.495 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
156 | 157 | 4.974645 | ACTTGTGGTGATTTCCTAGTGA | 57.025 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
157 | 158 | 5.308825 | AGAACTTGTGGTGATTTCCTAGTG | 58.691 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
158 | 159 | 5.552178 | GAGAACTTGTGGTGATTTCCTAGT | 58.448 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
159 | 160 | 4.627467 | CGAGAACTTGTGGTGATTTCCTAG | 59.373 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
160 | 161 | 4.282449 | TCGAGAACTTGTGGTGATTTCCTA | 59.718 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
161 | 162 | 3.071023 | TCGAGAACTTGTGGTGATTTCCT | 59.929 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
162 | 163 | 3.399330 | TCGAGAACTTGTGGTGATTTCC | 58.601 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
163 | 164 | 3.120511 | GCTCGAGAACTTGTGGTGATTTC | 60.121 | 47.826 | 18.75 | 0.00 | 0.00 | 2.17 |
164 | 165 | 2.808543 | GCTCGAGAACTTGTGGTGATTT | 59.191 | 45.455 | 18.75 | 0.00 | 0.00 | 2.17 |
165 | 166 | 2.417719 | GCTCGAGAACTTGTGGTGATT | 58.582 | 47.619 | 18.75 | 0.00 | 0.00 | 2.57 |
166 | 167 | 1.338200 | GGCTCGAGAACTTGTGGTGAT | 60.338 | 52.381 | 18.75 | 0.00 | 0.00 | 3.06 |
167 | 168 | 0.033504 | GGCTCGAGAACTTGTGGTGA | 59.966 | 55.000 | 18.75 | 0.00 | 0.00 | 4.02 |
168 | 169 | 0.249868 | TGGCTCGAGAACTTGTGGTG | 60.250 | 55.000 | 18.75 | 0.00 | 0.00 | 4.17 |
169 | 170 | 0.687354 | ATGGCTCGAGAACTTGTGGT | 59.313 | 50.000 | 18.75 | 0.00 | 0.00 | 4.16 |
170 | 171 | 1.363744 | GATGGCTCGAGAACTTGTGG | 58.636 | 55.000 | 18.75 | 0.00 | 0.00 | 4.17 |
206 | 207 | 2.882876 | CCGGTGACTACTGACGGG | 59.117 | 66.667 | 0.00 | 0.00 | 40.79 | 5.28 |
214 | 215 | 1.488390 | GGGATGTAACCCGGTGACTA | 58.512 | 55.000 | 6.61 | 0.00 | 40.49 | 2.59 |
227 | 228 | 3.327404 | GGTGGACCGTGGGGATGT | 61.327 | 66.667 | 0.00 | 0.00 | 36.97 | 3.06 |
289 | 290 | 1.684734 | ATCGGGTCTGGGTTAGCGT | 60.685 | 57.895 | 0.00 | 0.00 | 0.00 | 5.07 |
319 | 320 | 2.483889 | GGACCTCCTTTCATTCCTAGCG | 60.484 | 54.545 | 0.00 | 0.00 | 0.00 | 4.26 |
424 | 437 | 2.194056 | CCATGAAGCCCGCCATCT | 59.806 | 61.111 | 0.00 | 0.00 | 0.00 | 2.90 |
493 | 514 | 2.114670 | CACACCTTGCCGCCCATAG | 61.115 | 63.158 | 0.00 | 0.00 | 0.00 | 2.23 |
522 | 543 | 1.078567 | CCAGAGCAGACAAGAGCCC | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
550 | 591 | 1.212688 | CCAGCCCATCCACAACAGATA | 59.787 | 52.381 | 0.00 | 0.00 | 0.00 | 1.98 |
638 | 684 | 3.115892 | GACGCCGACGCCAAATGA | 61.116 | 61.111 | 0.00 | 0.00 | 45.53 | 2.57 |
674 | 720 | 0.394565 | ACGACTCCAAGAAGCAAGCT | 59.605 | 50.000 | 0.00 | 0.00 | 0.00 | 3.74 |
856 | 957 | 7.067615 | CGATATACTCTATTATGCTGTGGAGGT | 59.932 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
871 | 972 | 7.728847 | TTACACGGCTAAACGATATACTCTA | 57.271 | 36.000 | 0.00 | 0.00 | 37.61 | 2.43 |
872 | 973 | 6.624352 | TTACACGGCTAAACGATATACTCT | 57.376 | 37.500 | 0.00 | 0.00 | 37.61 | 3.24 |
873 | 974 | 7.864307 | AATTACACGGCTAAACGATATACTC | 57.136 | 36.000 | 0.00 | 0.00 | 37.61 | 2.59 |
874 | 975 | 7.306983 | GCAAATTACACGGCTAAACGATATACT | 60.307 | 37.037 | 0.00 | 0.00 | 37.61 | 2.12 |
875 | 976 | 6.788930 | GCAAATTACACGGCTAAACGATATAC | 59.211 | 38.462 | 0.00 | 0.00 | 37.61 | 1.47 |
886 | 987 | 2.088950 | ACGTAGCAAATTACACGGCT | 57.911 | 45.000 | 0.00 | 0.00 | 38.67 | 5.52 |
957 | 1058 | 9.014297 | CATTCACTTTGTAAAATACTCCCTCTT | 57.986 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
958 | 1059 | 7.121315 | GCATTCACTTTGTAAAATACTCCCTCT | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
977 | 1078 | 2.518949 | CTTATGTTGCGTGGCATTCAC | 58.481 | 47.619 | 0.00 | 0.00 | 38.76 | 3.18 |
1012 | 1113 | 1.396653 | AGTAATCTGCTGCCCAATGC | 58.603 | 50.000 | 0.00 | 0.00 | 41.77 | 3.56 |
1112 | 1213 | 2.880443 | ACCAGTACCAACGAAGGTAGA | 58.120 | 47.619 | 10.28 | 0.00 | 44.43 | 2.59 |
1135 | 1236 | 4.832608 | CGCCTACCGCCCACTTCC | 62.833 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
1357 | 1467 | 3.830192 | CCAGGGGCTTTGCGCATC | 61.830 | 66.667 | 12.75 | 3.25 | 43.41 | 3.91 |
1408 | 1518 | 0.313672 | GCAATGCACGGACCTTCAAA | 59.686 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1579 | 1689 | 0.673644 | CAAAGGAACGGCGATCCTGT | 60.674 | 55.000 | 34.78 | 28.57 | 46.65 | 4.00 |
1860 | 1970 | 6.071784 | ATGAAGACATACACGTAAGTACACCA | 60.072 | 38.462 | 0.00 | 0.00 | 41.73 | 4.17 |
1962 | 2073 | 0.107897 | TGGGATGTCCATTTCGGTCG | 60.108 | 55.000 | 0.86 | 0.00 | 41.46 | 4.79 |
2296 | 2408 | 8.629158 | ACATTTGACAACTAGATTTACAAAGCA | 58.371 | 29.630 | 0.00 | 0.00 | 31.02 | 3.91 |
2352 | 2464 | 6.421377 | TTCAAAAGTCATGTACCGATCATG | 57.579 | 37.500 | 0.00 | 7.69 | 42.53 | 3.07 |
2371 | 2483 | 8.203485 | AGATAAAATGGCAACTTCTTGTTTCAA | 58.797 | 29.630 | 0.00 | 0.00 | 36.63 | 2.69 |
2816 | 2930 | 7.232534 | AGTCATATCATCTTCACTCTAGGGTTC | 59.767 | 40.741 | 0.00 | 0.00 | 0.00 | 3.62 |
2850 | 2964 | 9.740710 | TTTCAAACCCCTTTTCATTTCTTTAAA | 57.259 | 25.926 | 0.00 | 0.00 | 0.00 | 1.52 |
2959 | 3073 | 2.342179 | TCTTGATCGTACGCATTTGCA | 58.658 | 42.857 | 11.24 | 0.00 | 42.21 | 4.08 |
2969 | 3083 | 2.943033 | TGAGTCGCTGATCTTGATCGTA | 59.057 | 45.455 | 6.19 | 0.00 | 0.00 | 3.43 |
3034 | 3148 | 9.561069 | CCTGGCTTATAACATAAAGATTGTAGT | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
3035 | 3149 | 9.003658 | CCCTGGCTTATAACATAAAGATTGTAG | 57.996 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3036 | 3150 | 8.499406 | ACCCTGGCTTATAACATAAAGATTGTA | 58.501 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3037 | 3151 | 7.354312 | ACCCTGGCTTATAACATAAAGATTGT | 58.646 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
3038 | 3152 | 7.040409 | GGACCCTGGCTTATAACATAAAGATTG | 60.040 | 40.741 | 0.00 | 0.00 | 0.00 | 2.67 |
3039 | 3153 | 7.004691 | GGACCCTGGCTTATAACATAAAGATT | 58.995 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
3040 | 3154 | 6.332901 | AGGACCCTGGCTTATAACATAAAGAT | 59.667 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
3041 | 3155 | 5.670361 | AGGACCCTGGCTTATAACATAAAGA | 59.330 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3042 | 3156 | 5.941788 | AGGACCCTGGCTTATAACATAAAG | 58.058 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
3043 | 3157 | 5.987019 | AGGACCCTGGCTTATAACATAAA | 57.013 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3044 | 3158 | 5.430417 | TCAAGGACCCTGGCTTATAACATAA | 59.570 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3045 | 3159 | 4.972568 | TCAAGGACCCTGGCTTATAACATA | 59.027 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3046 | 3160 | 3.785887 | TCAAGGACCCTGGCTTATAACAT | 59.214 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
3047 | 3161 | 3.186283 | TCAAGGACCCTGGCTTATAACA | 58.814 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
3048 | 3162 | 3.433740 | CCTCAAGGACCCTGGCTTATAAC | 60.434 | 52.174 | 0.00 | 0.00 | 37.39 | 1.89 |
3049 | 3163 | 2.777692 | CCTCAAGGACCCTGGCTTATAA | 59.222 | 50.000 | 0.00 | 0.00 | 37.39 | 0.98 |
3050 | 3164 | 2.408565 | CCTCAAGGACCCTGGCTTATA | 58.591 | 52.381 | 0.00 | 0.00 | 37.39 | 0.98 |
3051 | 3165 | 1.216990 | CCTCAAGGACCCTGGCTTAT | 58.783 | 55.000 | 0.00 | 0.00 | 37.39 | 1.73 |
3052 | 3166 | 1.562672 | GCCTCAAGGACCCTGGCTTA | 61.563 | 60.000 | 0.00 | 0.00 | 40.36 | 3.09 |
3053 | 3167 | 2.911926 | GCCTCAAGGACCCTGGCTT | 61.912 | 63.158 | 0.00 | 0.00 | 40.36 | 4.35 |
3054 | 3168 | 3.334054 | GCCTCAAGGACCCTGGCT | 61.334 | 66.667 | 0.00 | 0.00 | 40.36 | 4.75 |
3055 | 3169 | 3.635268 | CTGCCTCAAGGACCCTGGC | 62.635 | 68.421 | 8.50 | 8.50 | 43.49 | 4.85 |
3056 | 3170 | 2.673523 | CTGCCTCAAGGACCCTGG | 59.326 | 66.667 | 0.00 | 0.00 | 37.39 | 4.45 |
3057 | 3171 | 2.045536 | GCTGCCTCAAGGACCCTG | 60.046 | 66.667 | 0.00 | 0.00 | 37.39 | 4.45 |
3058 | 3172 | 3.710722 | CGCTGCCTCAAGGACCCT | 61.711 | 66.667 | 0.00 | 0.00 | 37.39 | 4.34 |
3059 | 3173 | 3.706373 | TCGCTGCCTCAAGGACCC | 61.706 | 66.667 | 0.00 | 0.00 | 37.39 | 4.46 |
3060 | 3174 | 2.435059 | GTCGCTGCCTCAAGGACC | 60.435 | 66.667 | 0.00 | 0.00 | 37.39 | 4.46 |
3061 | 3175 | 1.446966 | GAGTCGCTGCCTCAAGGAC | 60.447 | 63.158 | 0.00 | 0.00 | 37.39 | 3.85 |
3062 | 3176 | 1.908299 | TGAGTCGCTGCCTCAAGGA | 60.908 | 57.895 | 6.20 | 0.00 | 36.07 | 3.36 |
3063 | 3177 | 1.739562 | GTGAGTCGCTGCCTCAAGG | 60.740 | 63.158 | 9.67 | 0.00 | 40.44 | 3.61 |
3064 | 3178 | 2.091112 | CGTGAGTCGCTGCCTCAAG | 61.091 | 63.158 | 9.67 | 8.38 | 40.44 | 3.02 |
3065 | 3179 | 2.049156 | CGTGAGTCGCTGCCTCAA | 60.049 | 61.111 | 9.67 | 0.00 | 40.44 | 3.02 |
3066 | 3180 | 4.056125 | CCGTGAGTCGCTGCCTCA | 62.056 | 66.667 | 4.75 | 4.75 | 36.63 | 3.86 |
3067 | 3181 | 4.803426 | CCCGTGAGTCGCTGCCTC | 62.803 | 72.222 | 1.58 | 0.00 | 38.35 | 4.70 |
3069 | 3183 | 4.373116 | TTCCCGTGAGTCGCTGCC | 62.373 | 66.667 | 1.58 | 0.00 | 38.35 | 4.85 |
3070 | 3184 | 2.564553 | ATCTTCCCGTGAGTCGCTGC | 62.565 | 60.000 | 1.58 | 0.00 | 38.35 | 5.25 |
3071 | 3185 | 0.738975 | TATCTTCCCGTGAGTCGCTG | 59.261 | 55.000 | 1.58 | 0.00 | 38.35 | 5.18 |
3072 | 3186 | 1.609555 | GATATCTTCCCGTGAGTCGCT | 59.390 | 52.381 | 1.58 | 0.00 | 38.35 | 4.93 |
3073 | 3187 | 1.337071 | TGATATCTTCCCGTGAGTCGC | 59.663 | 52.381 | 3.98 | 0.00 | 38.35 | 5.19 |
3074 | 3188 | 2.357952 | TGTGATATCTTCCCGTGAGTCG | 59.642 | 50.000 | 3.98 | 0.00 | 39.52 | 4.18 |
3075 | 3189 | 4.113354 | GTTGTGATATCTTCCCGTGAGTC | 58.887 | 47.826 | 3.98 | 0.00 | 0.00 | 3.36 |
3076 | 3190 | 3.513912 | TGTTGTGATATCTTCCCGTGAGT | 59.486 | 43.478 | 3.98 | 0.00 | 0.00 | 3.41 |
3077 | 3191 | 3.865745 | GTGTTGTGATATCTTCCCGTGAG | 59.134 | 47.826 | 3.98 | 0.00 | 0.00 | 3.51 |
3078 | 3192 | 3.259625 | TGTGTTGTGATATCTTCCCGTGA | 59.740 | 43.478 | 3.98 | 0.00 | 0.00 | 4.35 |
3079 | 3193 | 3.595173 | TGTGTTGTGATATCTTCCCGTG | 58.405 | 45.455 | 3.98 | 0.00 | 0.00 | 4.94 |
3080 | 3194 | 3.973206 | TGTGTTGTGATATCTTCCCGT | 57.027 | 42.857 | 3.98 | 0.00 | 0.00 | 5.28 |
3081 | 3195 | 4.253685 | AGTTGTGTTGTGATATCTTCCCG | 58.746 | 43.478 | 3.98 | 0.00 | 0.00 | 5.14 |
3082 | 3196 | 5.491982 | AGAGTTGTGTTGTGATATCTTCCC | 58.508 | 41.667 | 3.98 | 0.00 | 0.00 | 3.97 |
3083 | 3197 | 7.489757 | GTCTAGAGTTGTGTTGTGATATCTTCC | 59.510 | 40.741 | 3.98 | 0.00 | 0.00 | 3.46 |
3084 | 3198 | 8.029522 | TGTCTAGAGTTGTGTTGTGATATCTTC | 58.970 | 37.037 | 3.98 | 0.00 | 0.00 | 2.87 |
3085 | 3199 | 7.815068 | GTGTCTAGAGTTGTGTTGTGATATCTT | 59.185 | 37.037 | 3.98 | 0.00 | 0.00 | 2.40 |
3086 | 3200 | 7.039714 | TGTGTCTAGAGTTGTGTTGTGATATCT | 60.040 | 37.037 | 3.98 | 0.00 | 0.00 | 1.98 |
3087 | 3201 | 7.090808 | TGTGTCTAGAGTTGTGTTGTGATATC | 58.909 | 38.462 | 0.00 | 0.00 | 0.00 | 1.63 |
3088 | 3202 | 6.993079 | TGTGTCTAGAGTTGTGTTGTGATAT | 58.007 | 36.000 | 0.00 | 0.00 | 0.00 | 1.63 |
3089 | 3203 | 6.399639 | TGTGTCTAGAGTTGTGTTGTGATA | 57.600 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
3090 | 3204 | 5.276461 | TGTGTCTAGAGTTGTGTTGTGAT | 57.724 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
3091 | 3205 | 4.729227 | TGTGTCTAGAGTTGTGTTGTGA | 57.271 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
3092 | 3206 | 5.794687 | TTTGTGTCTAGAGTTGTGTTGTG | 57.205 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
3093 | 3207 | 8.500753 | TTTATTTGTGTCTAGAGTTGTGTTGT | 57.499 | 30.769 | 0.00 | 0.00 | 0.00 | 3.32 |
3094 | 3208 | 9.950680 | ATTTTATTTGTGTCTAGAGTTGTGTTG | 57.049 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
3142 | 3256 | 1.562672 | GCCTCAAGGACCCTGGCTTA | 61.563 | 60.000 | 0.00 | 0.00 | 40.36 | 3.09 |
3165 | 3424 | 1.229820 | TTAGGAGGCTCCCAGGCAA | 60.230 | 57.895 | 29.62 | 13.09 | 44.19 | 4.52 |
3190 | 3449 | 4.047059 | GAGACCGCCGACGACCAA | 62.047 | 66.667 | 0.00 | 0.00 | 43.93 | 3.67 |
3233 | 3492 | 2.414293 | GCACCACTGACGACTACTACTG | 60.414 | 54.545 | 0.00 | 0.00 | 0.00 | 2.74 |
3266 | 3526 | 2.947652 | CTGCAATCAAATGACGGATCCT | 59.052 | 45.455 | 10.75 | 0.00 | 0.00 | 3.24 |
3283 | 3543 | 0.396435 | CCCTATACCCGATTGCTGCA | 59.604 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
3304 | 3564 | 1.070289 | CCCCACCGGAGTTAATCTAGC | 59.930 | 57.143 | 9.46 | 0.00 | 0.00 | 3.42 |
3382 | 4704 | 0.673022 | GTGCTGGCCTCTCAGTTGAG | 60.673 | 60.000 | 3.32 | 2.69 | 43.36 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.