Multiple sequence alignment - TraesCS3D01G205000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G205000 chr3D 100.000 3402 0 0 1 3402 259433240 259436641 0.000000e+00 6283.0
1 TraesCS3D01G205000 chr3D 79.756 573 65 28 399 934 498834803 498835361 5.360000e-98 368.0
2 TraesCS3D01G205000 chr3D 91.333 150 9 2 3159 3304 352027433 352027284 5.760000e-48 202.0
3 TraesCS3D01G205000 chr3D 91.216 148 11 2 3159 3305 507537419 507537565 2.070000e-47 200.0
4 TraesCS3D01G205000 chr3D 90.604 149 10 4 2924 3071 559071503 559071358 9.630000e-46 195.0
5 TraesCS3D01G205000 chr3D 98.901 91 1 0 3072 3162 259436221 259436311 2.720000e-36 163.0
6 TraesCS3D01G205000 chr3D 93.878 98 6 0 3305 3402 507537993 507538090 7.610000e-32 148.0
7 TraesCS3D01G205000 chr3D 89.011 91 9 1 35 124 236553955 236553865 9.980000e-21 111.0
8 TraesCS3D01G205000 chr3A 96.365 2146 54 11 938 3071 354853621 354851488 0.000000e+00 3509.0
9 TraesCS3D01G205000 chr3A 88.350 618 54 7 340 946 354859870 354859260 0.000000e+00 726.0
10 TraesCS3D01G205000 chr3A 89.562 297 27 4 2615 2908 60138890 60139185 1.150000e-99 374.0
11 TraesCS3D01G205000 chr3A 88.535 314 28 8 2615 2923 171717890 171718200 1.150000e-99 374.0
12 TraesCS3D01G205000 chr3A 88.304 171 16 4 22 190 147909691 147909859 5.760000e-48 202.0
13 TraesCS3D01G205000 chr3A 96.907 97 3 0 3306 3402 354850135 354850039 2.720000e-36 163.0
14 TraesCS3D01G205000 chr3A 93.617 94 6 0 3072 3165 354851577 354851484 1.270000e-29 141.0
15 TraesCS3D01G205000 chr3B 96.589 2111 57 7 966 3066 366392613 366394718 0.000000e+00 3485.0
16 TraesCS3D01G205000 chr3B 80.580 448 66 13 293 735 659489253 659489684 3.270000e-85 326.0
17 TraesCS3D01G205000 chr3B 91.837 147 10 2 3159 3304 366394829 366394974 1.600000e-48 204.0
18 TraesCS3D01G205000 chrUn 79.872 780 108 26 189 926 99114626 99113854 3.010000e-145 525.0
19 TraesCS3D01G205000 chrUn 87.313 134 16 1 3159 3291 369248593 369248460 5.880000e-33 152.0
20 TraesCS3D01G205000 chrUn 87.313 134 16 1 3159 3291 369272300 369272433 5.880000e-33 152.0
21 TraesCS3D01G205000 chrUn 87.313 134 16 1 3159 3291 466764762 466764895 5.880000e-33 152.0
22 TraesCS3D01G205000 chrUn 84.354 147 22 1 3159 3304 317033098 317033244 3.540000e-30 143.0
23 TraesCS3D01G205000 chrUn 85.185 135 17 3 3159 3291 7034080 7033947 5.920000e-28 135.0
24 TraesCS3D01G205000 chrUn 88.034 117 10 4 3159 3273 160314036 160313922 5.920000e-28 135.0
25 TraesCS3D01G205000 chrUn 88.034 117 10 4 3159 3273 160377472 160377358 5.920000e-28 135.0
26 TraesCS3D01G205000 chrUn 85.185 135 17 3 3159 3291 433246633 433246500 5.920000e-28 135.0
27 TraesCS3D01G205000 chrUn 84.444 135 18 3 3159 3291 117232697 117232564 2.760000e-26 130.0
28 TraesCS3D01G205000 chrUn 84.444 135 18 3 3159 3291 117241737 117241604 2.760000e-26 130.0
29 TraesCS3D01G205000 chrUn 84.444 135 18 3 3159 3291 153920692 153920825 2.760000e-26 130.0
30 TraesCS3D01G205000 chrUn 82.667 150 18 5 3159 3301 85633699 85633847 3.560000e-25 126.0
31 TraesCS3D01G205000 chrUn 91.111 90 6 2 3076 3165 285334216 285334303 1.660000e-23 121.0
32 TraesCS3D01G205000 chrUn 90.110 91 5 4 3076 3165 8002463 8002376 7.710000e-22 115.0
33 TraesCS3D01G205000 chrUn 89.362 94 7 3 3072 3165 296004041 296004131 7.710000e-22 115.0
34 TraesCS3D01G205000 chrUn 90.000 90 7 2 3076 3165 319380225 319380138 7.710000e-22 115.0
35 TraesCS3D01G205000 chrUn 90.000 90 7 2 3076 3165 319394994 319395081 7.710000e-22 115.0
36 TraesCS3D01G205000 chrUn 90.110 91 5 2 3076 3165 366129361 366129274 7.710000e-22 115.0
37 TraesCS3D01G205000 chrUn 90.110 91 5 2 3076 3165 377362303 377362390 7.710000e-22 115.0
38 TraesCS3D01G205000 chrUn 90.000 90 7 2 3076 3165 463652094 463652007 7.710000e-22 115.0
39 TraesCS3D01G205000 chrUn 90.698 86 7 1 3076 3161 319984023 319983939 2.770000e-21 113.0
40 TraesCS3D01G205000 chrUn 88.421 95 7 4 3072 3165 201809575 201809666 9.980000e-21 111.0
41 TraesCS3D01G205000 chr2A 81.596 614 93 13 189 788 678549237 678549844 1.100000e-134 490.0
42 TraesCS3D01G205000 chr4B 79.221 770 108 24 211 934 632866986 632867749 3.950000e-134 488.0
43 TraesCS3D01G205000 chr4B 90.476 147 13 1 3159 3304 641870086 641870232 3.460000e-45 193.0
44 TraesCS3D01G205000 chr4B 88.889 144 14 2 3159 3301 47659559 47659701 3.490000e-40 176.0
45 TraesCS3D01G205000 chr4B 89.691 97 10 0 3306 3402 47672745 47672841 1.280000e-24 124.0
46 TraesCS3D01G205000 chr4B 90.426 94 8 1 3072 3165 271395032 271395124 4.610000e-24 122.0
47 TraesCS3D01G205000 chr4B 91.209 91 4 4 3076 3165 243327650 243327737 1.660000e-23 121.0
48 TraesCS3D01G205000 chr4B 91.111 90 5 3 3076 3165 163104961 163104875 5.960000e-23 119.0
49 TraesCS3D01G205000 chr4B 90.323 93 6 3 3072 3164 570637705 570637616 5.960000e-23 119.0
50 TraesCS3D01G205000 chr4B 89.474 95 6 4 3072 3165 5593136 5593045 2.140000e-22 117.0
51 TraesCS3D01G205000 chr4B 89.474 95 6 2 3072 3165 380663475 380663384 2.140000e-22 117.0
52 TraesCS3D01G205000 chr5B 78.636 777 119 30 195 934 592364309 592363543 3.970000e-129 472.0
53 TraesCS3D01G205000 chr5B 90.604 149 10 4 2924 3071 256290808 256290663 9.630000e-46 195.0
54 TraesCS3D01G205000 chr5B 90.604 149 10 4 2924 3071 517278759 517278904 9.630000e-46 195.0
55 TraesCS3D01G205000 chr5B 88.535 157 14 4 36 190 70101886 70102040 1.610000e-43 187.0
56 TraesCS3D01G205000 chr5B 89.865 148 11 4 3159 3304 108471666 108471811 1.610000e-43 187.0
57 TraesCS3D01G205000 chr5B 91.489 94 5 3 3072 3165 517278818 517278908 3.560000e-25 126.0
58 TraesCS3D01G205000 chr5B 90.526 95 6 3 3071 3165 423721460 423721369 4.610000e-24 122.0
59 TraesCS3D01G205000 chr5B 90.426 94 6 3 3072 3165 256290749 256290659 1.660000e-23 121.0
60 TraesCS3D01G205000 chr5B 91.765 85 7 0 3072 3156 364991941 364992025 5.960000e-23 119.0
61 TraesCS3D01G205000 chr1D 79.667 600 96 11 195 782 25107807 25108392 3.160000e-110 409.0
62 TraesCS3D01G205000 chr1D 91.156 147 12 1 3159 3304 61827197 61827051 7.450000e-47 198.0
63 TraesCS3D01G205000 chr1D 90.196 153 10 5 2921 3071 290601079 290600930 9.630000e-46 195.0
64 TraesCS3D01G205000 chr1D 90.476 147 10 2 3159 3304 354773501 354773644 1.250000e-44 191.0
65 TraesCS3D01G205000 chr1D 88.961 154 12 5 2920 3071 139111920 139111770 5.800000e-43 185.0
66 TraesCS3D01G205000 chr1D 89.116 147 10 5 3159 3303 2195338 2195480 9.700000e-41 178.0
67 TraesCS3D01G205000 chr1D 89.437 142 14 1 3159 3299 237140078 237139937 9.700000e-41 178.0
68 TraesCS3D01G205000 chr1D 88.000 150 14 2 3159 3304 180828874 180828725 1.250000e-39 174.0
69 TraesCS3D01G205000 chr1D 87.671 146 15 3 3159 3302 229542767 229542623 2.100000e-37 167.0
70 TraesCS3D01G205000 chr1D 86.897 145 18 1 3162 3305 449581158 449581014 9.770000e-36 161.0
71 TraesCS3D01G205000 chr1D 92.857 98 7 0 3305 3402 162726555 162726458 3.540000e-30 143.0
72 TraesCS3D01G205000 chr1D 92.857 98 7 0 3305 3402 341022448 341022545 3.540000e-30 143.0
73 TraesCS3D01G205000 chr1D 91.837 98 8 0 3305 3402 109158942 109158845 1.650000e-28 137.0
74 TraesCS3D01G205000 chr1D 90.909 99 5 4 3306 3402 198620349 198620445 2.760000e-26 130.0
75 TraesCS3D01G205000 chr1D 89.362 94 9 1 3072 3165 246727826 246727734 2.140000e-22 117.0
76 TraesCS3D01G205000 chr1D 88.298 94 11 0 3309 3402 422863640 422863733 2.770000e-21 113.0
77 TraesCS3D01G205000 chr2B 79.100 622 81 19 347 933 767966628 767966021 1.920000e-102 383.0
78 TraesCS3D01G205000 chr2B 90.604 149 10 4 2924 3071 562774014 562774159 9.630000e-46 195.0
79 TraesCS3D01G205000 chr2B 83.133 166 22 4 26 190 425006897 425007057 2.740000e-31 147.0
80 TraesCS3D01G205000 chr5A 88.854 314 27 8 2616 2923 137312484 137312173 2.480000e-101 379.0
81 TraesCS3D01G205000 chr5A 88.608 316 28 8 2613 2923 363546929 363547241 8.910000e-101 377.0
82 TraesCS3D01G205000 chr5A 100.000 29 0 0 904 932 619603677 619603705 2.000000e-03 54.7
83 TraesCS3D01G205000 chr1A 88.746 311 27 6 2616 2923 208153192 208152887 1.150000e-99 374.0
84 TraesCS3D01G205000 chr1A 88.571 315 27 9 2616 2923 339900469 339900157 1.150000e-99 374.0
85 TraesCS3D01G205000 chr1A 90.541 148 12 2 3159 3305 538711794 538711648 9.630000e-46 195.0
86 TraesCS3D01G205000 chr1A 89.189 148 12 4 3159 3304 49236753 49236898 7.500000e-42 182.0
87 TraesCS3D01G205000 chr4A 88.125 320 28 10 2611 2923 570374391 570374707 4.150000e-99 372.0
88 TraesCS3D01G205000 chr4A 91.156 147 12 1 3159 3304 105424227 105424081 7.450000e-47 198.0
89 TraesCS3D01G205000 chr1B 80.000 480 72 12 321 788 40392582 40393049 1.960000e-87 333.0
90 TraesCS3D01G205000 chr1B 91.111 90 8 0 3076 3165 196821065 196821154 4.610000e-24 122.0
91 TraesCS3D01G205000 chr1B 90.426 94 6 2 3072 3165 303471314 303471224 1.660000e-23 121.0
92 TraesCS3D01G205000 chr1B 90.426 94 6 3 3072 3165 313425161 313425251 1.660000e-23 121.0
93 TraesCS3D01G205000 chr2D 90.533 169 14 2 23 190 472483377 472483544 4.420000e-54 222.0
94 TraesCS3D01G205000 chr2D 91.216 148 10 3 3159 3304 67954398 67954544 7.450000e-47 198.0
95 TraesCS3D01G205000 chr2D 93.814 97 5 1 3305 3401 175881554 175881459 9.840000e-31 145.0
96 TraesCS3D01G205000 chr2D 90.426 94 8 1 3072 3165 9397732 9397824 4.610000e-24 122.0
97 TraesCS3D01G205000 chr7A 91.156 147 12 1 3159 3304 407903835 407903689 7.450000e-47 198.0
98 TraesCS3D01G205000 chr7B 90.604 149 10 4 2924 3071 227843418 227843563 9.630000e-46 195.0
99 TraesCS3D01G205000 chr7B 92.784 97 7 0 3305 3401 270549965 270549869 1.270000e-29 141.0
100 TraesCS3D01G205000 chr7B 90.426 94 8 1 3072 3165 632533367 632533459 4.610000e-24 122.0
101 TraesCS3D01G205000 chr7B 90.426 94 6 3 3072 3165 227843477 227843567 1.660000e-23 121.0
102 TraesCS3D01G205000 chr5D 91.096 146 10 3 3159 3302 95059103 95058959 9.630000e-46 195.0
103 TraesCS3D01G205000 chr5D 89.189 148 14 2 3159 3305 331066941 331066795 2.090000e-42 183.0
104 TraesCS3D01G205000 chr5D 91.111 90 8 0 3076 3165 192576874 192576785 4.610000e-24 122.0
105 TraesCS3D01G205000 chr5D 91.111 90 8 0 3076 3165 192598061 192597972 4.610000e-24 122.0
106 TraesCS3D01G205000 chr5D 91.111 90 7 1 3076 3165 418344807 418344895 1.660000e-23 121.0
107 TraesCS3D01G205000 chr6B 89.542 153 12 4 2920 3071 217118510 217118659 1.250000e-44 191.0
108 TraesCS3D01G205000 chr6B 92.857 98 7 0 3305 3402 331125348 331125251 3.540000e-30 143.0
109 TraesCS3D01G205000 chr6B 90.526 95 5 2 3072 3165 439358150 439358241 4.610000e-24 122.0
110 TraesCS3D01G205000 chr4D 89.796 147 14 1 3159 3304 101428769 101428623 1.610000e-43 187.0
111 TraesCS3D01G205000 chr4D 87.770 139 13 4 3159 3295 344353117 344353253 3.510000e-35 159.0
112 TraesCS3D01G205000 chr4D 87.313 134 16 1 3159 3291 325326838 325326971 5.880000e-33 152.0
113 TraesCS3D01G205000 chr4D 87.407 135 13 4 3159 3290 478218351 478218218 5.880000e-33 152.0
114 TraesCS3D01G205000 chr4D 86.331 139 17 2 3159 3296 172120997 172121134 2.110000e-32 150.0
115 TraesCS3D01G205000 chr4D 90.816 98 9 0 3305 3402 121797079 121796982 7.660000e-27 132.0
116 TraesCS3D01G205000 chr4D 90.000 90 9 0 3076 3165 137901134 137901223 2.140000e-22 117.0
117 TraesCS3D01G205000 chr4D 89.474 95 6 4 3310 3402 277310317 277310225 2.140000e-22 117.0
118 TraesCS3D01G205000 chr4D 93.590 78 5 0 3324 3401 282229327 282229250 2.140000e-22 117.0
119 TraesCS3D01G205000 chr4D 89.474 95 6 4 3072 3165 378196112 378196021 2.140000e-22 117.0
120 TraesCS3D01G205000 chr4D 89.362 94 7 3 3072 3165 150023824 150023734 7.710000e-22 115.0
121 TraesCS3D01G205000 chr4D 89.362 94 7 3 3072 3165 296324530 296324440 7.710000e-22 115.0
122 TraesCS3D01G205000 chr4D 95.385 65 3 0 3338 3402 193603642 193603578 1.670000e-18 104.0
123 TraesCS3D01G205000 chr6D 87.755 147 17 1 3159 3304 262011837 262011691 1.620000e-38 171.0
124 TraesCS3D01G205000 chr6D 85.811 148 18 3 3159 3304 70529033 70528887 1.630000e-33 154.0
125 TraesCS3D01G205000 chr6D 87.597 129 15 1 3159 3286 135015429 135015301 7.610000e-32 148.0
126 TraesCS3D01G205000 chr6D 86.429 140 14 5 3159 3294 199763276 199763138 7.610000e-32 148.0
127 TraesCS3D01G205000 chr6D 86.667 135 13 2 3159 3290 305350579 305350447 9.840000e-31 145.0
128 TraesCS3D01G205000 chr6D 84.828 145 17 3 3163 3304 284816134 284815992 1.270000e-29 141.0
129 TraesCS3D01G205000 chr6D 91.837 98 7 1 3305 3402 323151291 323151387 5.920000e-28 135.0
130 TraesCS3D01G205000 chr6D 88.776 98 10 1 3305 3401 161252213 161252310 5.960000e-23 119.0
131 TraesCS3D01G205000 chr6D 90.323 93 6 3 3072 3164 169515862 169515773 5.960000e-23 119.0
132 TraesCS3D01G205000 chr6D 89.362 94 7 3 3072 3165 304362496 304362406 7.710000e-22 115.0
133 TraesCS3D01G205000 chr6D 89.362 94 7 3 3072 3165 325554938 325555028 7.710000e-22 115.0
134 TraesCS3D01G205000 chr6D 89.362 94 7 3 3072 3165 397615965 397616055 7.710000e-22 115.0
135 TraesCS3D01G205000 chr6D 96.923 65 2 0 3338 3402 159604504 159604568 3.590000e-20 110.0
136 TraesCS3D01G205000 chr6D 85.714 98 14 0 3305 3402 305350065 305349968 1.670000e-18 104.0
137 TraesCS3D01G205000 chr6D 95.312 64 3 0 3338 3401 273945800 273945863 6.010000e-18 102.0
138 TraesCS3D01G205000 chr6D 95.312 64 3 0 3338 3401 273970490 273970553 6.010000e-18 102.0
139 TraesCS3D01G205000 chr6D 92.188 64 5 0 3338 3401 16571022 16570959 1.300000e-14 91.6
140 TraesCS3D01G205000 chr7D 93.878 98 6 0 3305 3402 71879067 71878970 7.610000e-32 148.0
141 TraesCS3D01G205000 chr7D 93.878 98 6 0 3305 3402 379762893 379762990 7.610000e-32 148.0
142 TraesCS3D01G205000 chr7D 92.473 93 7 0 3309 3401 432196100 432196008 2.130000e-27 134.0
143 TraesCS3D01G205000 chr6A 91.304 92 8 0 3305 3396 344031921 344031830 3.560000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G205000 chr3D 259433240 259436641 3401 False 3223.0 6283 99.450500 1 3402 2 chr3D.!!$F2 3401
1 TraesCS3D01G205000 chr3D 498834803 498835361 558 False 368.0 368 79.756000 399 934 1 chr3D.!!$F1 535
2 TraesCS3D01G205000 chr3A 354850039 354853621 3582 True 1271.0 3509 95.629667 938 3402 3 chr3A.!!$R2 2464
3 TraesCS3D01G205000 chr3A 354859260 354859870 610 True 726.0 726 88.350000 340 946 1 chr3A.!!$R1 606
4 TraesCS3D01G205000 chr3B 366392613 366394974 2361 False 1844.5 3485 94.213000 966 3304 2 chr3B.!!$F2 2338
5 TraesCS3D01G205000 chrUn 99113854 99114626 772 True 525.0 525 79.872000 189 926 1 chrUn.!!$R3 737
6 TraesCS3D01G205000 chr2A 678549237 678549844 607 False 490.0 490 81.596000 189 788 1 chr2A.!!$F1 599
7 TraesCS3D01G205000 chr4B 632866986 632867749 763 False 488.0 488 79.221000 211 934 1 chr4B.!!$F5 723
8 TraesCS3D01G205000 chr5B 592363543 592364309 766 True 472.0 472 78.636000 195 934 1 chr5B.!!$R2 739
9 TraesCS3D01G205000 chr1D 25107807 25108392 585 False 409.0 409 79.667000 195 782 1 chr1D.!!$F2 587
10 TraesCS3D01G205000 chr2B 767966021 767966628 607 True 383.0 383 79.100000 347 933 1 chr2B.!!$R1 586


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.033504 TCACCACAAGTTCTCGAGCC 59.966 55.0 7.81 0.13 0.00 4.70 F
751 807 0.034059 CCTTGCTTGGACTCGACACT 59.966 55.0 0.00 0.00 0.00 3.55 F
1579 1689 0.178767 CCAAGGAGGACATCGATGCA 59.821 55.0 25.11 0.00 41.22 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2073 0.107897 TGGGATGTCCATTTCGGTCG 60.108 55.0 0.86 0.00 41.46 4.79 R
2352 2464 6.421377 TTCAAAAGTCATGTACCGATCATG 57.579 37.5 0.00 7.69 42.53 3.07 R
3283 3543 0.396435 CCCTATACCCGATTGCTGCA 59.604 55.0 0.00 0.00 0.00 4.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.891422 TTTCATGCAATGTTCCCCATC 57.109 42.857 0.00 0.00 46.80 3.51
21 22 2.528673 TCATGCAATGTTCCCCATCA 57.471 45.000 0.00 0.00 46.80 3.07
22 23 2.380941 TCATGCAATGTTCCCCATCAG 58.619 47.619 0.00 0.00 46.80 2.90
23 24 1.117150 ATGCAATGTTCCCCATCAGC 58.883 50.000 0.00 0.00 35.92 4.26
24 25 0.251698 TGCAATGTTCCCCATCAGCA 60.252 50.000 0.00 0.00 40.24 4.41
25 26 0.896923 GCAATGTTCCCCATCAGCAA 59.103 50.000 0.00 0.00 35.62 3.91
26 27 1.404583 GCAATGTTCCCCATCAGCAAC 60.405 52.381 0.00 0.00 35.62 4.17
27 28 1.205417 CAATGTTCCCCATCAGCAACC 59.795 52.381 0.00 0.00 31.75 3.77
28 29 0.324645 ATGTTCCCCATCAGCAACCC 60.325 55.000 0.00 0.00 0.00 4.11
29 30 1.682344 GTTCCCCATCAGCAACCCC 60.682 63.158 0.00 0.00 0.00 4.95
30 31 1.856873 TTCCCCATCAGCAACCCCT 60.857 57.895 0.00 0.00 0.00 4.79
31 32 1.863155 TTCCCCATCAGCAACCCCTC 61.863 60.000 0.00 0.00 0.00 4.30
32 33 2.311854 CCCCATCAGCAACCCCTCT 61.312 63.158 0.00 0.00 0.00 3.69
33 34 1.225704 CCCATCAGCAACCCCTCTC 59.774 63.158 0.00 0.00 0.00 3.20
34 35 1.153289 CCATCAGCAACCCCTCTCG 60.153 63.158 0.00 0.00 0.00 4.04
35 36 1.153289 CATCAGCAACCCCTCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
36 37 1.613630 ATCAGCAACCCCTCTCGGT 60.614 57.895 0.00 0.00 37.93 4.69
38 39 1.073199 CAGCAACCCCTCTCGGTTT 59.927 57.895 0.00 0.00 43.88 3.27
39 40 0.955919 CAGCAACCCCTCTCGGTTTC 60.956 60.000 0.00 0.00 43.88 2.78
40 41 1.674651 GCAACCCCTCTCGGTTTCC 60.675 63.158 0.00 0.00 43.88 3.13
41 42 2.067197 CAACCCCTCTCGGTTTCCT 58.933 57.895 0.00 0.00 43.88 3.36
42 43 0.400594 CAACCCCTCTCGGTTTCCTT 59.599 55.000 0.00 0.00 43.88 3.36
43 44 0.691332 AACCCCTCTCGGTTTCCTTC 59.309 55.000 0.00 0.00 43.88 3.46
44 45 1.199425 ACCCCTCTCGGTTTCCTTCC 61.199 60.000 0.00 0.00 29.19 3.46
45 46 1.198759 CCCCTCTCGGTTTCCTTCCA 61.199 60.000 0.00 0.00 0.00 3.53
46 47 0.912486 CCCTCTCGGTTTCCTTCCAT 59.088 55.000 0.00 0.00 0.00 3.41
47 48 2.116238 CCCTCTCGGTTTCCTTCCATA 58.884 52.381 0.00 0.00 0.00 2.74
48 49 2.504175 CCCTCTCGGTTTCCTTCCATAA 59.496 50.000 0.00 0.00 0.00 1.90
49 50 3.136626 CCCTCTCGGTTTCCTTCCATAAT 59.863 47.826 0.00 0.00 0.00 1.28
50 51 4.385310 CCCTCTCGGTTTCCTTCCATAATT 60.385 45.833 0.00 0.00 0.00 1.40
51 52 5.193679 CCTCTCGGTTTCCTTCCATAATTT 58.806 41.667 0.00 0.00 0.00 1.82
52 53 6.354130 CCTCTCGGTTTCCTTCCATAATTTA 58.646 40.000 0.00 0.00 0.00 1.40
53 54 6.260271 CCTCTCGGTTTCCTTCCATAATTTAC 59.740 42.308 0.00 0.00 0.00 2.01
54 55 6.713276 TCTCGGTTTCCTTCCATAATTTACA 58.287 36.000 0.00 0.00 0.00 2.41
55 56 7.343357 TCTCGGTTTCCTTCCATAATTTACAT 58.657 34.615 0.00 0.00 0.00 2.29
56 57 7.832187 TCTCGGTTTCCTTCCATAATTTACATT 59.168 33.333 0.00 0.00 0.00 2.71
57 58 8.356000 TCGGTTTCCTTCCATAATTTACATTT 57.644 30.769 0.00 0.00 0.00 2.32
58 59 8.463607 TCGGTTTCCTTCCATAATTTACATTTC 58.536 33.333 0.00 0.00 0.00 2.17
59 60 7.704899 CGGTTTCCTTCCATAATTTACATTTCC 59.295 37.037 0.00 0.00 0.00 3.13
60 61 8.758829 GGTTTCCTTCCATAATTTACATTTCCT 58.241 33.333 0.00 0.00 0.00 3.36
61 62 9.586435 GTTTCCTTCCATAATTTACATTTCCTG 57.414 33.333 0.00 0.00 0.00 3.86
62 63 7.346751 TCCTTCCATAATTTACATTTCCTGC 57.653 36.000 0.00 0.00 0.00 4.85
63 64 6.323739 TCCTTCCATAATTTACATTTCCTGCC 59.676 38.462 0.00 0.00 0.00 4.85
64 65 6.098124 CCTTCCATAATTTACATTTCCTGCCA 59.902 38.462 0.00 0.00 0.00 4.92
65 66 7.364585 CCTTCCATAATTTACATTTCCTGCCAA 60.365 37.037 0.00 0.00 0.00 4.52
66 67 7.487822 TCCATAATTTACATTTCCTGCCAAA 57.512 32.000 0.00 0.00 0.00 3.28
67 68 7.327214 TCCATAATTTACATTTCCTGCCAAAC 58.673 34.615 0.00 0.00 0.00 2.93
68 69 7.038729 TCCATAATTTACATTTCCTGCCAAACA 60.039 33.333 0.00 0.00 0.00 2.83
69 70 7.769970 CCATAATTTACATTTCCTGCCAAACAT 59.230 33.333 0.00 0.00 0.00 2.71
70 71 9.165035 CATAATTTACATTTCCTGCCAAACATT 57.835 29.630 0.00 0.00 0.00 2.71
71 72 7.437793 AATTTACATTTCCTGCCAAACATTG 57.562 32.000 0.00 0.00 0.00 2.82
88 89 8.248117 CAAACATTGGAAAATGGATCTTCTTC 57.752 34.615 3.70 0.00 34.56 2.87
89 90 7.787623 AACATTGGAAAATGGATCTTCTTCT 57.212 32.000 3.70 0.00 34.56 2.85
90 91 7.401955 ACATTGGAAAATGGATCTTCTTCTC 57.598 36.000 3.70 0.00 34.56 2.87
91 92 7.180663 ACATTGGAAAATGGATCTTCTTCTCT 58.819 34.615 3.70 0.00 34.56 3.10
92 93 7.673082 ACATTGGAAAATGGATCTTCTTCTCTT 59.327 33.333 3.70 0.00 34.56 2.85
93 94 8.529476 CATTGGAAAATGGATCTTCTTCTCTTT 58.471 33.333 0.00 0.00 0.00 2.52
94 95 7.693969 TGGAAAATGGATCTTCTTCTCTTTC 57.306 36.000 0.00 0.00 0.00 2.62
95 96 6.372659 TGGAAAATGGATCTTCTTCTCTTTCG 59.627 38.462 0.00 0.00 0.00 3.46
96 97 6.595716 GGAAAATGGATCTTCTTCTCTTTCGA 59.404 38.462 0.00 0.00 0.00 3.71
97 98 7.201600 GGAAAATGGATCTTCTTCTCTTTCGAG 60.202 40.741 0.00 0.00 38.67 4.04
98 99 4.727507 TGGATCTTCTTCTCTTTCGAGG 57.272 45.455 0.00 0.00 37.86 4.63
99 100 3.449018 TGGATCTTCTTCTCTTTCGAGGG 59.551 47.826 0.00 0.00 37.86 4.30
100 101 3.702045 GGATCTTCTTCTCTTTCGAGGGA 59.298 47.826 0.00 0.00 37.86 4.20
101 102 4.343814 GGATCTTCTTCTCTTTCGAGGGAT 59.656 45.833 0.00 0.00 37.86 3.85
102 103 5.163353 GGATCTTCTTCTCTTTCGAGGGATT 60.163 44.000 0.00 0.00 37.86 3.01
103 104 6.041069 GGATCTTCTTCTCTTTCGAGGGATTA 59.959 42.308 0.00 0.00 37.86 1.75
104 105 6.458232 TCTTCTTCTCTTTCGAGGGATTAG 57.542 41.667 0.00 0.00 37.86 1.73
105 106 5.952947 TCTTCTTCTCTTTCGAGGGATTAGT 59.047 40.000 0.00 0.00 37.86 2.24
106 107 5.584253 TCTTCTCTTTCGAGGGATTAGTG 57.416 43.478 0.00 0.00 37.86 2.74
107 108 5.017490 TCTTCTCTTTCGAGGGATTAGTGT 58.983 41.667 0.00 0.00 37.86 3.55
108 109 5.480772 TCTTCTCTTTCGAGGGATTAGTGTT 59.519 40.000 0.00 0.00 37.86 3.32
109 110 6.662234 TCTTCTCTTTCGAGGGATTAGTGTTA 59.338 38.462 0.00 0.00 37.86 2.41
110 111 6.452494 TCTCTTTCGAGGGATTAGTGTTAG 57.548 41.667 0.00 0.00 37.86 2.34
111 112 6.185511 TCTCTTTCGAGGGATTAGTGTTAGA 58.814 40.000 0.00 0.00 37.86 2.10
112 113 6.662234 TCTCTTTCGAGGGATTAGTGTTAGAA 59.338 38.462 0.00 0.00 37.86 2.10
113 114 7.177921 TCTCTTTCGAGGGATTAGTGTTAGAAA 59.822 37.037 0.00 0.00 37.86 2.52
114 115 7.848128 TCTTTCGAGGGATTAGTGTTAGAAAT 58.152 34.615 0.00 0.00 0.00 2.17
115 116 8.974238 TCTTTCGAGGGATTAGTGTTAGAAATA 58.026 33.333 0.00 0.00 0.00 1.40
116 117 9.765795 CTTTCGAGGGATTAGTGTTAGAAATAT 57.234 33.333 0.00 0.00 0.00 1.28
117 118 9.760077 TTTCGAGGGATTAGTGTTAGAAATATC 57.240 33.333 0.00 0.00 0.00 1.63
118 119 7.893658 TCGAGGGATTAGTGTTAGAAATATCC 58.106 38.462 0.00 0.00 0.00 2.59
119 120 6.807230 CGAGGGATTAGTGTTAGAAATATCCG 59.193 42.308 0.00 0.00 32.69 4.18
120 121 7.309012 CGAGGGATTAGTGTTAGAAATATCCGA 60.309 40.741 0.00 0.00 32.69 4.55
121 122 8.258850 AGGGATTAGTGTTAGAAATATCCGAA 57.741 34.615 0.00 0.00 32.69 4.30
122 123 8.368668 AGGGATTAGTGTTAGAAATATCCGAAG 58.631 37.037 0.00 0.00 32.69 3.79
123 124 8.365647 GGGATTAGTGTTAGAAATATCCGAAGA 58.634 37.037 0.00 0.00 32.69 2.87
124 125 9.413048 GGATTAGTGTTAGAAATATCCGAAGAG 57.587 37.037 0.00 0.00 0.00 2.85
125 126 9.968870 GATTAGTGTTAGAAATATCCGAAGAGT 57.031 33.333 0.00 0.00 0.00 3.24
138 139 8.773404 ATATCCGAAGAGTAATAAAAATCCGG 57.227 34.615 0.00 0.00 35.07 5.14
139 140 5.981174 TCCGAAGAGTAATAAAAATCCGGT 58.019 37.500 0.00 0.00 35.27 5.28
140 141 5.813672 TCCGAAGAGTAATAAAAATCCGGTG 59.186 40.000 0.00 0.00 35.27 4.94
141 142 5.813672 CCGAAGAGTAATAAAAATCCGGTGA 59.186 40.000 0.00 0.00 0.00 4.02
142 143 6.314400 CCGAAGAGTAATAAAAATCCGGTGAA 59.686 38.462 0.00 0.00 0.00 3.18
143 144 7.148373 CCGAAGAGTAATAAAAATCCGGTGAAA 60.148 37.037 0.00 0.00 0.00 2.69
144 145 8.231837 CGAAGAGTAATAAAAATCCGGTGAAAA 58.768 33.333 0.00 0.00 0.00 2.29
145 146 9.338291 GAAGAGTAATAAAAATCCGGTGAAAAC 57.662 33.333 0.00 0.00 0.00 2.43
146 147 7.823665 AGAGTAATAAAAATCCGGTGAAAACC 58.176 34.615 0.00 0.00 0.00 3.27
147 148 7.449086 AGAGTAATAAAAATCCGGTGAAAACCA 59.551 33.333 0.00 0.00 0.00 3.67
148 149 7.953752 AGTAATAAAAATCCGGTGAAAACCAA 58.046 30.769 0.00 0.00 0.00 3.67
149 150 8.085909 AGTAATAAAAATCCGGTGAAAACCAAG 58.914 33.333 0.00 0.00 0.00 3.61
150 151 4.746535 AAAAATCCGGTGAAAACCAAGT 57.253 36.364 0.00 0.00 0.00 3.16
151 152 5.855740 AAAAATCCGGTGAAAACCAAGTA 57.144 34.783 0.00 0.00 0.00 2.24
152 153 5.855740 AAAATCCGGTGAAAACCAAGTAA 57.144 34.783 0.00 0.00 0.00 2.24
153 154 5.447624 AAATCCGGTGAAAACCAAGTAAG 57.552 39.130 0.00 0.00 0.00 2.34
154 155 3.842007 TCCGGTGAAAACCAAGTAAGA 57.158 42.857 0.00 0.00 0.00 2.10
155 156 4.153673 TCCGGTGAAAACCAAGTAAGAA 57.846 40.909 0.00 0.00 0.00 2.52
156 157 4.721132 TCCGGTGAAAACCAAGTAAGAAT 58.279 39.130 0.00 0.00 0.00 2.40
157 158 4.758165 TCCGGTGAAAACCAAGTAAGAATC 59.242 41.667 0.00 0.00 0.00 2.52
158 159 4.517453 CCGGTGAAAACCAAGTAAGAATCA 59.483 41.667 0.00 0.00 0.00 2.57
159 160 5.449304 CGGTGAAAACCAAGTAAGAATCAC 58.551 41.667 0.00 0.00 36.18 3.06
160 161 5.238650 CGGTGAAAACCAAGTAAGAATCACT 59.761 40.000 0.00 0.00 36.91 3.41
161 162 6.425721 CGGTGAAAACCAAGTAAGAATCACTA 59.574 38.462 0.00 0.00 36.91 2.74
162 163 7.360101 CGGTGAAAACCAAGTAAGAATCACTAG 60.360 40.741 0.00 0.00 36.91 2.57
163 164 7.094762 GGTGAAAACCAAGTAAGAATCACTAGG 60.095 40.741 0.00 0.00 36.91 3.02
164 165 7.660208 GTGAAAACCAAGTAAGAATCACTAGGA 59.340 37.037 0.00 0.00 34.58 2.94
165 166 8.215050 TGAAAACCAAGTAAGAATCACTAGGAA 58.785 33.333 0.00 0.00 0.00 3.36
166 167 8.990163 AAAACCAAGTAAGAATCACTAGGAAA 57.010 30.769 0.00 0.00 0.00 3.13
167 168 9.588096 AAAACCAAGTAAGAATCACTAGGAAAT 57.412 29.630 0.00 0.00 0.00 2.17
168 169 8.794335 AACCAAGTAAGAATCACTAGGAAATC 57.206 34.615 0.00 0.00 0.00 2.17
169 170 7.918076 ACCAAGTAAGAATCACTAGGAAATCA 58.082 34.615 0.00 0.00 0.00 2.57
170 171 7.824779 ACCAAGTAAGAATCACTAGGAAATCAC 59.175 37.037 0.00 0.00 0.00 3.06
171 172 7.281100 CCAAGTAAGAATCACTAGGAAATCACC 59.719 40.741 0.00 0.00 0.00 4.02
172 173 7.496346 AGTAAGAATCACTAGGAAATCACCA 57.504 36.000 0.00 0.00 0.00 4.17
173 174 7.331791 AGTAAGAATCACTAGGAAATCACCAC 58.668 38.462 0.00 0.00 0.00 4.16
174 175 5.762179 AGAATCACTAGGAAATCACCACA 57.238 39.130 0.00 0.00 0.00 4.17
175 176 6.126863 AGAATCACTAGGAAATCACCACAA 57.873 37.500 0.00 0.00 0.00 3.33
176 177 6.176183 AGAATCACTAGGAAATCACCACAAG 58.824 40.000 0.00 0.00 0.00 3.16
177 178 4.974645 TCACTAGGAAATCACCACAAGT 57.025 40.909 0.00 0.00 0.00 3.16
178 179 5.304686 TCACTAGGAAATCACCACAAGTT 57.695 39.130 0.00 0.00 0.00 2.66
179 180 5.305585 TCACTAGGAAATCACCACAAGTTC 58.694 41.667 0.00 0.00 0.00 3.01
180 181 5.071788 TCACTAGGAAATCACCACAAGTTCT 59.928 40.000 0.00 0.00 0.00 3.01
181 182 5.409826 CACTAGGAAATCACCACAAGTTCTC 59.590 44.000 0.00 0.00 0.00 2.87
182 183 3.403038 AGGAAATCACCACAAGTTCTCG 58.597 45.455 0.00 0.00 0.00 4.04
183 184 3.071023 AGGAAATCACCACAAGTTCTCGA 59.929 43.478 0.00 0.00 0.00 4.04
184 185 3.433615 GGAAATCACCACAAGTTCTCGAG 59.566 47.826 5.93 5.93 0.00 4.04
185 186 2.086054 ATCACCACAAGTTCTCGAGC 57.914 50.000 7.81 0.00 0.00 5.03
186 187 0.033504 TCACCACAAGTTCTCGAGCC 59.966 55.000 7.81 0.13 0.00 4.70
187 188 0.249868 CACCACAAGTTCTCGAGCCA 60.250 55.000 7.81 0.00 0.00 4.75
188 189 0.687354 ACCACAAGTTCTCGAGCCAT 59.313 50.000 7.81 0.00 0.00 4.40
189 190 1.338200 ACCACAAGTTCTCGAGCCATC 60.338 52.381 7.81 0.00 0.00 3.51
221 222 1.080025 GTGCCCGTCAGTAGTCACC 60.080 63.158 0.00 0.00 0.00 4.02
227 228 1.167851 CGTCAGTAGTCACCGGGTTA 58.832 55.000 6.32 0.00 0.00 2.85
306 307 2.283388 ACGCTAACCCAGACCCGA 60.283 61.111 0.00 0.00 0.00 5.14
493 514 2.897969 TGGTGACTCTACTTCTTGGTCC 59.102 50.000 0.00 0.00 0.00 4.46
508 529 2.690881 TCCTATGGGCGGCAAGGT 60.691 61.111 19.27 2.73 0.00 3.50
674 720 4.794648 GCGGTGCCTATGGGTGCA 62.795 66.667 0.00 0.00 34.54 4.57
751 807 0.034059 CCTTGCTTGGACTCGACACT 59.966 55.000 0.00 0.00 0.00 3.55
753 809 0.249868 TTGCTTGGACTCGACACTGG 60.250 55.000 0.00 0.00 0.00 4.00
856 957 8.868522 ATCCTTTGATCTGTTTTGTAAGATGA 57.131 30.769 0.00 0.00 33.26 2.92
871 972 4.785346 AAGATGACCTCCACAGCATAAT 57.215 40.909 0.00 0.00 0.00 1.28
872 973 5.894298 AAGATGACCTCCACAGCATAATA 57.106 39.130 0.00 0.00 0.00 0.98
873 974 5.480642 AGATGACCTCCACAGCATAATAG 57.519 43.478 0.00 0.00 0.00 1.73
874 975 5.150715 AGATGACCTCCACAGCATAATAGA 58.849 41.667 0.00 0.00 0.00 1.98
875 976 4.944619 TGACCTCCACAGCATAATAGAG 57.055 45.455 0.00 0.00 0.00 2.43
934 1035 9.280174 CTTTATATATAAAGCGGGGTTGAAAGA 57.720 33.333 25.10 0.00 41.69 2.52
1012 1113 2.852495 ATAAGCCGCACACTCCACCG 62.852 60.000 0.00 0.00 0.00 4.94
1135 1236 1.897802 ACCTTCGTTGGTACTGGTAGG 59.102 52.381 0.55 0.00 38.79 3.18
1408 1518 4.457496 CCACAGATCGGCGTGCCT 62.457 66.667 6.85 0.00 0.00 4.75
1579 1689 0.178767 CCAAGGAGGACATCGATGCA 59.821 55.000 25.11 0.00 41.22 3.96
1618 1728 7.993183 TCCTTTGATCTTCTTGTGGGTATATTC 59.007 37.037 0.00 0.00 0.00 1.75
1819 1929 8.824159 TCATATATTGCTCTCTGAAAGCTTAC 57.176 34.615 0.00 0.00 40.50 2.34
1860 1970 5.988287 TGGTGGAAAAGAAAGCTGAATTTT 58.012 33.333 0.00 0.00 0.00 1.82
1962 2073 2.228103 GGATGTTGAGGTTTCGGGTTTC 59.772 50.000 0.00 0.00 0.00 2.78
2371 2483 6.403049 TGTAACATGATCGGTACATGACTTT 58.597 36.000 18.50 9.19 45.22 2.66
2634 2747 8.893563 TCCTAATGTAACATCCCAAAATTCTT 57.106 30.769 0.00 0.00 0.00 2.52
2788 2902 8.980610 CAAACTTTCATACTTGCATTTTGATCA 58.019 29.630 0.00 0.00 0.00 2.92
2789 2903 9.715121 AAACTTTCATACTTGCATTTTGATCAT 57.285 25.926 0.00 0.00 0.00 2.45
2850 2964 8.032045 AGTGAAGATGATATGACTTCTTCCAT 57.968 34.615 17.86 9.85 43.78 3.41
2959 3073 8.929746 CGACTTAATCATGCACTAATCATACAT 58.070 33.333 0.00 0.00 0.00 2.29
2969 3083 5.513376 CACTAATCATACATGCAAATGCGT 58.487 37.500 0.00 0.00 45.83 5.24
3060 3174 9.561069 ACTACAATCTTTATGTTATAAGCCAGG 57.439 33.333 0.00 0.00 32.27 4.45
3061 3175 7.823745 ACAATCTTTATGTTATAAGCCAGGG 57.176 36.000 0.00 0.00 0.00 4.45
3062 3176 7.354312 ACAATCTTTATGTTATAAGCCAGGGT 58.646 34.615 0.00 0.00 0.00 4.34
3063 3177 7.502561 ACAATCTTTATGTTATAAGCCAGGGTC 59.497 37.037 0.00 0.00 0.00 4.46
3064 3178 5.937111 TCTTTATGTTATAAGCCAGGGTCC 58.063 41.667 0.00 0.00 0.00 4.46
3065 3179 5.670361 TCTTTATGTTATAAGCCAGGGTCCT 59.330 40.000 0.00 0.00 0.00 3.85
3066 3180 5.987019 TTATGTTATAAGCCAGGGTCCTT 57.013 39.130 0.00 0.00 0.00 3.36
3067 3181 3.644966 TGTTATAAGCCAGGGTCCTTG 57.355 47.619 0.00 0.00 0.00 3.61
3068 3182 3.186283 TGTTATAAGCCAGGGTCCTTGA 58.814 45.455 1.73 0.00 0.00 3.02
3069 3183 3.199946 TGTTATAAGCCAGGGTCCTTGAG 59.800 47.826 1.73 0.00 0.00 3.02
3070 3184 1.216990 ATAAGCCAGGGTCCTTGAGG 58.783 55.000 1.73 0.00 0.00 3.86
3071 3185 1.562672 TAAGCCAGGGTCCTTGAGGC 61.563 60.000 1.73 8.35 45.54 4.70
3072 3186 3.650950 GCCAGGGTCCTTGAGGCA 61.651 66.667 1.73 0.00 44.59 4.75
3073 3187 2.673523 CCAGGGTCCTTGAGGCAG 59.326 66.667 1.73 0.00 34.44 4.85
3074 3188 2.045536 CAGGGTCCTTGAGGCAGC 60.046 66.667 0.00 0.00 34.44 5.25
3075 3189 3.710722 AGGGTCCTTGAGGCAGCG 61.711 66.667 0.00 0.00 34.44 5.18
3076 3190 3.706373 GGGTCCTTGAGGCAGCGA 61.706 66.667 0.00 0.00 34.44 4.93
3077 3191 2.435059 GGTCCTTGAGGCAGCGAC 60.435 66.667 0.00 0.00 34.44 5.19
3078 3192 2.659610 GTCCTTGAGGCAGCGACT 59.340 61.111 0.00 0.00 34.44 4.18
3079 3193 1.446966 GTCCTTGAGGCAGCGACTC 60.447 63.158 4.68 4.68 38.37 3.36
3083 3197 4.056125 TGAGGCAGCGACTCACGG 62.056 66.667 9.61 0.00 43.49 4.94
3084 3198 4.803426 GAGGCAGCGACTCACGGG 62.803 72.222 6.55 0.00 37.69 5.28
3086 3200 4.373116 GGCAGCGACTCACGGGAA 62.373 66.667 0.00 0.00 42.83 3.97
3087 3201 2.811317 GCAGCGACTCACGGGAAG 60.811 66.667 0.00 0.00 42.83 3.46
3088 3202 2.962569 CAGCGACTCACGGGAAGA 59.037 61.111 0.00 0.00 42.83 2.87
3089 3203 1.513158 CAGCGACTCACGGGAAGAT 59.487 57.895 0.00 0.00 42.83 2.40
3090 3204 0.738975 CAGCGACTCACGGGAAGATA 59.261 55.000 0.00 0.00 42.83 1.98
3091 3205 1.338337 CAGCGACTCACGGGAAGATAT 59.662 52.381 0.00 0.00 42.83 1.63
3092 3206 1.609555 AGCGACTCACGGGAAGATATC 59.390 52.381 0.00 0.00 42.83 1.63
3093 3207 1.337071 GCGACTCACGGGAAGATATCA 59.663 52.381 5.32 0.00 42.83 2.15
3094 3208 2.859032 GCGACTCACGGGAAGATATCAC 60.859 54.545 5.32 0.00 42.83 3.06
3095 3209 2.357952 CGACTCACGGGAAGATATCACA 59.642 50.000 5.32 0.00 38.46 3.58
3096 3210 3.181490 CGACTCACGGGAAGATATCACAA 60.181 47.826 5.32 0.00 38.46 3.33
3097 3211 4.113354 GACTCACGGGAAGATATCACAAC 58.887 47.826 5.32 0.00 0.00 3.32
3098 3212 3.513912 ACTCACGGGAAGATATCACAACA 59.486 43.478 5.32 0.00 0.00 3.33
3099 3213 3.857052 TCACGGGAAGATATCACAACAC 58.143 45.455 5.32 0.00 0.00 3.32
3100 3214 3.259625 TCACGGGAAGATATCACAACACA 59.740 43.478 5.32 0.00 0.00 3.72
3101 3215 4.000325 CACGGGAAGATATCACAACACAA 59.000 43.478 5.32 0.00 0.00 3.33
3102 3216 4.000988 ACGGGAAGATATCACAACACAAC 58.999 43.478 5.32 0.00 0.00 3.32
3103 3217 4.253685 CGGGAAGATATCACAACACAACT 58.746 43.478 5.32 0.00 0.00 3.16
3104 3218 4.330074 CGGGAAGATATCACAACACAACTC 59.670 45.833 5.32 0.00 0.00 3.01
3105 3219 5.491982 GGGAAGATATCACAACACAACTCT 58.508 41.667 5.32 0.00 0.00 3.24
3106 3220 6.627287 CGGGAAGATATCACAACACAACTCTA 60.627 42.308 5.32 0.00 0.00 2.43
3107 3221 6.758886 GGGAAGATATCACAACACAACTCTAG 59.241 42.308 5.32 0.00 0.00 2.43
3108 3222 7.363880 GGGAAGATATCACAACACAACTCTAGA 60.364 40.741 5.32 0.00 0.00 2.43
3109 3223 7.489757 GGAAGATATCACAACACAACTCTAGAC 59.510 40.741 5.32 0.00 0.00 2.59
3110 3224 7.468141 AGATATCACAACACAACTCTAGACA 57.532 36.000 5.32 0.00 0.00 3.41
3111 3225 7.316640 AGATATCACAACACAACTCTAGACAC 58.683 38.462 5.32 0.00 0.00 3.67
3112 3226 4.729227 TCACAACACAACTCTAGACACA 57.271 40.909 0.00 0.00 0.00 3.72
3113 3227 5.079689 TCACAACACAACTCTAGACACAA 57.920 39.130 0.00 0.00 0.00 3.33
3114 3228 5.483811 TCACAACACAACTCTAGACACAAA 58.516 37.500 0.00 0.00 0.00 2.83
3115 3229 6.112734 TCACAACACAACTCTAGACACAAAT 58.887 36.000 0.00 0.00 0.00 2.32
3116 3230 7.269316 TCACAACACAACTCTAGACACAAATA 58.731 34.615 0.00 0.00 0.00 1.40
3117 3231 7.766738 TCACAACACAACTCTAGACACAAATAA 59.233 33.333 0.00 0.00 0.00 1.40
3118 3232 8.394877 CACAACACAACTCTAGACACAAATAAA 58.605 33.333 0.00 0.00 0.00 1.40
3119 3233 8.952278 ACAACACAACTCTAGACACAAATAAAA 58.048 29.630 0.00 0.00 0.00 1.52
3120 3234 9.950680 CAACACAACTCTAGACACAAATAAAAT 57.049 29.630 0.00 0.00 0.00 1.82
3156 3270 5.987019 TTATGTTATAAGCCAGGGTCCTT 57.013 39.130 0.00 0.00 0.00 3.36
3165 3424 1.614824 CAGGGTCCTTGAGGCCTCT 60.615 63.158 32.28 7.74 33.64 3.69
3190 3449 1.930914 TGGGAGCCTCCTAACTACTCT 59.069 52.381 11.29 0.00 36.57 3.24
3247 3506 1.028330 CGGGGCAGTAGTAGTCGTCA 61.028 60.000 0.00 0.00 0.00 4.35
3254 3513 1.811359 AGTAGTAGTCGTCAGTGGTGC 59.189 52.381 0.00 0.00 0.00 5.01
3255 3514 1.538512 GTAGTAGTCGTCAGTGGTGCA 59.461 52.381 0.00 0.00 0.00 4.57
3256 3515 1.257743 AGTAGTCGTCAGTGGTGCAT 58.742 50.000 0.00 0.00 0.00 3.96
3278 3538 1.343069 GGCTCCTAGGATCCGTCATT 58.657 55.000 15.82 0.00 0.00 2.57
3283 3543 4.503991 GCTCCTAGGATCCGTCATTTGATT 60.504 45.833 13.12 0.00 0.00 2.57
3304 3564 0.324943 CAGCAATCGGGTATAGGGGG 59.675 60.000 0.00 0.00 0.00 5.40
3382 4704 1.316651 CACCGTAGTCCTACCTAGGC 58.683 60.000 9.30 0.00 43.31 3.93
3388 4710 3.684981 CGTAGTCCTACCTAGGCTCAACT 60.685 52.174 9.30 10.41 43.31 3.16
3389 4711 2.741145 AGTCCTACCTAGGCTCAACTG 58.259 52.381 9.30 0.00 43.31 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.380941 CTGATGGGGAACATTGCATGA 58.619 47.619 0.00 0.00 40.72 3.07
4 5 1.117150 GCTGATGGGGAACATTGCAT 58.883 50.000 0.00 0.00 40.72 3.96
6 7 0.896923 TTGCTGATGGGGAACATTGC 59.103 50.000 0.00 0.00 40.72 3.56
7 8 1.205417 GGTTGCTGATGGGGAACATTG 59.795 52.381 0.00 0.00 40.72 2.82
8 9 1.560505 GGTTGCTGATGGGGAACATT 58.439 50.000 0.00 0.00 40.72 2.71
9 10 0.324645 GGGTTGCTGATGGGGAACAT 60.325 55.000 0.00 0.00 44.18 2.71
10 11 1.076549 GGGTTGCTGATGGGGAACA 59.923 57.895 0.00 0.00 38.89 3.18
11 12 1.682344 GGGGTTGCTGATGGGGAAC 60.682 63.158 0.00 0.00 36.92 3.62
12 13 1.856873 AGGGGTTGCTGATGGGGAA 60.857 57.895 0.00 0.00 0.00 3.97
13 14 2.204291 AGGGGTTGCTGATGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
14 15 2.276309 GAGAGGGGTTGCTGATGGGG 62.276 65.000 0.00 0.00 0.00 4.96
15 16 1.225704 GAGAGGGGTTGCTGATGGG 59.774 63.158 0.00 0.00 0.00 4.00
16 17 1.153289 CGAGAGGGGTTGCTGATGG 60.153 63.158 0.00 0.00 0.00 3.51
17 18 4.528674 CGAGAGGGGTTGCTGATG 57.471 61.111 0.00 0.00 0.00 3.07
29 30 6.821665 TGTAAATTATGGAAGGAAACCGAGAG 59.178 38.462 0.00 0.00 0.00 3.20
30 31 6.713276 TGTAAATTATGGAAGGAAACCGAGA 58.287 36.000 0.00 0.00 0.00 4.04
31 32 6.995511 TGTAAATTATGGAAGGAAACCGAG 57.004 37.500 0.00 0.00 0.00 4.63
32 33 7.948034 AATGTAAATTATGGAAGGAAACCGA 57.052 32.000 0.00 0.00 0.00 4.69
33 34 7.704899 GGAAATGTAAATTATGGAAGGAAACCG 59.295 37.037 0.00 0.00 0.00 4.44
34 35 8.758829 AGGAAATGTAAATTATGGAAGGAAACC 58.241 33.333 0.00 0.00 0.00 3.27
35 36 9.586435 CAGGAAATGTAAATTATGGAAGGAAAC 57.414 33.333 0.00 0.00 0.00 2.78
36 37 8.257306 GCAGGAAATGTAAATTATGGAAGGAAA 58.743 33.333 0.00 0.00 0.00 3.13
37 38 7.147742 GGCAGGAAATGTAAATTATGGAAGGAA 60.148 37.037 0.00 0.00 0.00 3.36
38 39 6.323739 GGCAGGAAATGTAAATTATGGAAGGA 59.676 38.462 0.00 0.00 0.00 3.36
39 40 6.098124 TGGCAGGAAATGTAAATTATGGAAGG 59.902 38.462 0.00 0.00 0.00 3.46
40 41 7.111247 TGGCAGGAAATGTAAATTATGGAAG 57.889 36.000 0.00 0.00 0.00 3.46
41 42 7.487822 TTGGCAGGAAATGTAAATTATGGAA 57.512 32.000 0.00 0.00 0.00 3.53
42 43 7.038729 TGTTTGGCAGGAAATGTAAATTATGGA 60.039 33.333 0.00 0.00 0.00 3.41
43 44 7.102346 TGTTTGGCAGGAAATGTAAATTATGG 58.898 34.615 0.00 0.00 0.00 2.74
44 45 8.721019 ATGTTTGGCAGGAAATGTAAATTATG 57.279 30.769 0.00 0.00 0.00 1.90
45 46 9.165035 CAATGTTTGGCAGGAAATGTAAATTAT 57.835 29.630 0.00 0.00 0.00 1.28
46 47 7.605691 CCAATGTTTGGCAGGAAATGTAAATTA 59.394 33.333 0.00 0.00 45.17 1.40
47 48 6.430616 CCAATGTTTGGCAGGAAATGTAAATT 59.569 34.615 0.00 0.00 45.17 1.82
48 49 5.939296 CCAATGTTTGGCAGGAAATGTAAAT 59.061 36.000 0.00 0.00 45.17 1.40
49 50 5.303971 CCAATGTTTGGCAGGAAATGTAAA 58.696 37.500 0.00 0.00 45.17 2.01
50 51 4.892433 CCAATGTTTGGCAGGAAATGTAA 58.108 39.130 0.00 0.00 45.17 2.41
51 52 4.533919 CCAATGTTTGGCAGGAAATGTA 57.466 40.909 0.00 0.00 45.17 2.29
52 53 3.405823 CCAATGTTTGGCAGGAAATGT 57.594 42.857 0.00 0.00 45.17 2.71
63 64 8.092687 AGAAGAAGATCCATTTTCCAATGTTTG 58.907 33.333 0.00 0.00 38.58 2.93
64 65 8.198807 AGAAGAAGATCCATTTTCCAATGTTT 57.801 30.769 0.00 0.00 38.58 2.83
65 66 7.673082 AGAGAAGAAGATCCATTTTCCAATGTT 59.327 33.333 0.00 0.00 38.58 2.71
66 67 7.180663 AGAGAAGAAGATCCATTTTCCAATGT 58.819 34.615 0.00 0.00 38.58 2.71
67 68 7.642082 AGAGAAGAAGATCCATTTTCCAATG 57.358 36.000 0.00 0.00 39.79 2.82
68 69 8.661752 AAAGAGAAGAAGATCCATTTTCCAAT 57.338 30.769 0.00 0.00 0.00 3.16
69 70 7.094634 CGAAAGAGAAGAAGATCCATTTTCCAA 60.095 37.037 0.00 0.00 0.00 3.53
70 71 6.372659 CGAAAGAGAAGAAGATCCATTTTCCA 59.627 38.462 0.00 0.00 0.00 3.53
71 72 6.595716 TCGAAAGAGAAGAAGATCCATTTTCC 59.404 38.462 0.00 0.00 34.84 3.13
72 73 7.602517 TCGAAAGAGAAGAAGATCCATTTTC 57.397 36.000 0.00 0.00 34.84 2.29
89 90 6.845758 TTCTAACACTAATCCCTCGAAAGA 57.154 37.500 0.00 0.00 39.12 2.52
90 91 9.765795 ATATTTCTAACACTAATCCCTCGAAAG 57.234 33.333 0.00 0.00 0.00 2.62
91 92 9.760077 GATATTTCTAACACTAATCCCTCGAAA 57.240 33.333 0.00 0.00 0.00 3.46
92 93 8.365647 GGATATTTCTAACACTAATCCCTCGAA 58.634 37.037 0.00 0.00 0.00 3.71
93 94 7.309012 CGGATATTTCTAACACTAATCCCTCGA 60.309 40.741 0.00 0.00 0.00 4.04
94 95 6.807230 CGGATATTTCTAACACTAATCCCTCG 59.193 42.308 0.00 0.00 0.00 4.63
95 96 7.893658 TCGGATATTTCTAACACTAATCCCTC 58.106 38.462 0.00 0.00 0.00 4.30
96 97 7.850935 TCGGATATTTCTAACACTAATCCCT 57.149 36.000 0.00 0.00 0.00 4.20
97 98 8.365647 TCTTCGGATATTTCTAACACTAATCCC 58.634 37.037 0.00 0.00 0.00 3.85
98 99 9.413048 CTCTTCGGATATTTCTAACACTAATCC 57.587 37.037 0.00 0.00 0.00 3.01
99 100 9.968870 ACTCTTCGGATATTTCTAACACTAATC 57.031 33.333 0.00 0.00 0.00 1.75
112 113 9.216117 CCGGATTTTTATTACTCTTCGGATATT 57.784 33.333 0.00 0.00 36.30 1.28
113 114 8.373220 ACCGGATTTTTATTACTCTTCGGATAT 58.627 33.333 9.46 0.00 37.47 1.63
114 115 7.654520 CACCGGATTTTTATTACTCTTCGGATA 59.345 37.037 9.46 0.00 37.47 2.59
115 116 6.482308 CACCGGATTTTTATTACTCTTCGGAT 59.518 38.462 9.46 0.00 37.47 4.18
116 117 5.813672 CACCGGATTTTTATTACTCTTCGGA 59.186 40.000 9.46 0.00 37.47 4.55
117 118 5.813672 TCACCGGATTTTTATTACTCTTCGG 59.186 40.000 9.46 0.00 39.59 4.30
118 119 6.897259 TCACCGGATTTTTATTACTCTTCG 57.103 37.500 9.46 0.00 0.00 3.79
119 120 9.338291 GTTTTCACCGGATTTTTATTACTCTTC 57.662 33.333 9.46 0.00 0.00 2.87
120 121 8.301720 GGTTTTCACCGGATTTTTATTACTCTT 58.698 33.333 9.46 0.00 31.60 2.85
121 122 7.823665 GGTTTTCACCGGATTTTTATTACTCT 58.176 34.615 9.46 0.00 31.60 3.24
137 138 6.635030 AGTGATTCTTACTTGGTTTTCACC 57.365 37.500 0.00 0.00 44.56 4.02
138 139 7.660208 TCCTAGTGATTCTTACTTGGTTTTCAC 59.340 37.037 0.00 0.00 40.46 3.18
139 140 7.741785 TCCTAGTGATTCTTACTTGGTTTTCA 58.258 34.615 0.00 0.00 40.46 2.69
140 141 8.617290 TTCCTAGTGATTCTTACTTGGTTTTC 57.383 34.615 0.00 0.00 40.46 2.29
141 142 8.990163 TTTCCTAGTGATTCTTACTTGGTTTT 57.010 30.769 0.00 0.00 40.46 2.43
142 143 9.232473 GATTTCCTAGTGATTCTTACTTGGTTT 57.768 33.333 0.00 0.00 40.46 3.27
143 144 8.383175 TGATTTCCTAGTGATTCTTACTTGGTT 58.617 33.333 0.00 0.00 40.46 3.67
144 145 7.824779 GTGATTTCCTAGTGATTCTTACTTGGT 59.175 37.037 0.00 0.00 40.46 3.67
145 146 7.281100 GGTGATTTCCTAGTGATTCTTACTTGG 59.719 40.741 0.00 0.00 40.79 3.61
146 147 7.824289 TGGTGATTTCCTAGTGATTCTTACTTG 59.176 37.037 0.00 0.00 0.00 3.16
147 148 7.824779 GTGGTGATTTCCTAGTGATTCTTACTT 59.175 37.037 0.00 0.00 0.00 2.24
148 149 7.038302 TGTGGTGATTTCCTAGTGATTCTTACT 60.038 37.037 0.00 0.00 0.00 2.24
149 150 7.103641 TGTGGTGATTTCCTAGTGATTCTTAC 58.896 38.462 0.00 0.00 0.00 2.34
150 151 7.252612 TGTGGTGATTTCCTAGTGATTCTTA 57.747 36.000 0.00 0.00 0.00 2.10
151 152 6.126863 TGTGGTGATTTCCTAGTGATTCTT 57.873 37.500 0.00 0.00 0.00 2.52
152 153 5.762179 TGTGGTGATTTCCTAGTGATTCT 57.238 39.130 0.00 0.00 0.00 2.40
153 154 5.940470 ACTTGTGGTGATTTCCTAGTGATTC 59.060 40.000 0.00 0.00 0.00 2.52
154 155 5.880901 ACTTGTGGTGATTTCCTAGTGATT 58.119 37.500 0.00 0.00 0.00 2.57
155 156 5.505181 ACTTGTGGTGATTTCCTAGTGAT 57.495 39.130 0.00 0.00 0.00 3.06
156 157 4.974645 ACTTGTGGTGATTTCCTAGTGA 57.025 40.909 0.00 0.00 0.00 3.41
157 158 5.308825 AGAACTTGTGGTGATTTCCTAGTG 58.691 41.667 0.00 0.00 0.00 2.74
158 159 5.552178 GAGAACTTGTGGTGATTTCCTAGT 58.448 41.667 0.00 0.00 0.00 2.57
159 160 4.627467 CGAGAACTTGTGGTGATTTCCTAG 59.373 45.833 0.00 0.00 0.00 3.02
160 161 4.282449 TCGAGAACTTGTGGTGATTTCCTA 59.718 41.667 0.00 0.00 0.00 2.94
161 162 3.071023 TCGAGAACTTGTGGTGATTTCCT 59.929 43.478 0.00 0.00 0.00 3.36
162 163 3.399330 TCGAGAACTTGTGGTGATTTCC 58.601 45.455 0.00 0.00 0.00 3.13
163 164 3.120511 GCTCGAGAACTTGTGGTGATTTC 60.121 47.826 18.75 0.00 0.00 2.17
164 165 2.808543 GCTCGAGAACTTGTGGTGATTT 59.191 45.455 18.75 0.00 0.00 2.17
165 166 2.417719 GCTCGAGAACTTGTGGTGATT 58.582 47.619 18.75 0.00 0.00 2.57
166 167 1.338200 GGCTCGAGAACTTGTGGTGAT 60.338 52.381 18.75 0.00 0.00 3.06
167 168 0.033504 GGCTCGAGAACTTGTGGTGA 59.966 55.000 18.75 0.00 0.00 4.02
168 169 0.249868 TGGCTCGAGAACTTGTGGTG 60.250 55.000 18.75 0.00 0.00 4.17
169 170 0.687354 ATGGCTCGAGAACTTGTGGT 59.313 50.000 18.75 0.00 0.00 4.16
170 171 1.363744 GATGGCTCGAGAACTTGTGG 58.636 55.000 18.75 0.00 0.00 4.17
206 207 2.882876 CCGGTGACTACTGACGGG 59.117 66.667 0.00 0.00 40.79 5.28
214 215 1.488390 GGGATGTAACCCGGTGACTA 58.512 55.000 6.61 0.00 40.49 2.59
227 228 3.327404 GGTGGACCGTGGGGATGT 61.327 66.667 0.00 0.00 36.97 3.06
289 290 1.684734 ATCGGGTCTGGGTTAGCGT 60.685 57.895 0.00 0.00 0.00 5.07
319 320 2.483889 GGACCTCCTTTCATTCCTAGCG 60.484 54.545 0.00 0.00 0.00 4.26
424 437 2.194056 CCATGAAGCCCGCCATCT 59.806 61.111 0.00 0.00 0.00 2.90
493 514 2.114670 CACACCTTGCCGCCCATAG 61.115 63.158 0.00 0.00 0.00 2.23
522 543 1.078567 CCAGAGCAGACAAGAGCCC 60.079 63.158 0.00 0.00 0.00 5.19
550 591 1.212688 CCAGCCCATCCACAACAGATA 59.787 52.381 0.00 0.00 0.00 1.98
638 684 3.115892 GACGCCGACGCCAAATGA 61.116 61.111 0.00 0.00 45.53 2.57
674 720 0.394565 ACGACTCCAAGAAGCAAGCT 59.605 50.000 0.00 0.00 0.00 3.74
856 957 7.067615 CGATATACTCTATTATGCTGTGGAGGT 59.932 40.741 0.00 0.00 0.00 3.85
871 972 7.728847 TTACACGGCTAAACGATATACTCTA 57.271 36.000 0.00 0.00 37.61 2.43
872 973 6.624352 TTACACGGCTAAACGATATACTCT 57.376 37.500 0.00 0.00 37.61 3.24
873 974 7.864307 AATTACACGGCTAAACGATATACTC 57.136 36.000 0.00 0.00 37.61 2.59
874 975 7.306983 GCAAATTACACGGCTAAACGATATACT 60.307 37.037 0.00 0.00 37.61 2.12
875 976 6.788930 GCAAATTACACGGCTAAACGATATAC 59.211 38.462 0.00 0.00 37.61 1.47
886 987 2.088950 ACGTAGCAAATTACACGGCT 57.911 45.000 0.00 0.00 38.67 5.52
957 1058 9.014297 CATTCACTTTGTAAAATACTCCCTCTT 57.986 33.333 0.00 0.00 0.00 2.85
958 1059 7.121315 GCATTCACTTTGTAAAATACTCCCTCT 59.879 37.037 0.00 0.00 0.00 3.69
977 1078 2.518949 CTTATGTTGCGTGGCATTCAC 58.481 47.619 0.00 0.00 38.76 3.18
1012 1113 1.396653 AGTAATCTGCTGCCCAATGC 58.603 50.000 0.00 0.00 41.77 3.56
1112 1213 2.880443 ACCAGTACCAACGAAGGTAGA 58.120 47.619 10.28 0.00 44.43 2.59
1135 1236 4.832608 CGCCTACCGCCCACTTCC 62.833 72.222 0.00 0.00 0.00 3.46
1357 1467 3.830192 CCAGGGGCTTTGCGCATC 61.830 66.667 12.75 3.25 43.41 3.91
1408 1518 0.313672 GCAATGCACGGACCTTCAAA 59.686 50.000 0.00 0.00 0.00 2.69
1579 1689 0.673644 CAAAGGAACGGCGATCCTGT 60.674 55.000 34.78 28.57 46.65 4.00
1860 1970 6.071784 ATGAAGACATACACGTAAGTACACCA 60.072 38.462 0.00 0.00 41.73 4.17
1962 2073 0.107897 TGGGATGTCCATTTCGGTCG 60.108 55.000 0.86 0.00 41.46 4.79
2296 2408 8.629158 ACATTTGACAACTAGATTTACAAAGCA 58.371 29.630 0.00 0.00 31.02 3.91
2352 2464 6.421377 TTCAAAAGTCATGTACCGATCATG 57.579 37.500 0.00 7.69 42.53 3.07
2371 2483 8.203485 AGATAAAATGGCAACTTCTTGTTTCAA 58.797 29.630 0.00 0.00 36.63 2.69
2816 2930 7.232534 AGTCATATCATCTTCACTCTAGGGTTC 59.767 40.741 0.00 0.00 0.00 3.62
2850 2964 9.740710 TTTCAAACCCCTTTTCATTTCTTTAAA 57.259 25.926 0.00 0.00 0.00 1.52
2959 3073 2.342179 TCTTGATCGTACGCATTTGCA 58.658 42.857 11.24 0.00 42.21 4.08
2969 3083 2.943033 TGAGTCGCTGATCTTGATCGTA 59.057 45.455 6.19 0.00 0.00 3.43
3034 3148 9.561069 CCTGGCTTATAACATAAAGATTGTAGT 57.439 33.333 0.00 0.00 0.00 2.73
3035 3149 9.003658 CCCTGGCTTATAACATAAAGATTGTAG 57.996 37.037 0.00 0.00 0.00 2.74
3036 3150 8.499406 ACCCTGGCTTATAACATAAAGATTGTA 58.501 33.333 0.00 0.00 0.00 2.41
3037 3151 7.354312 ACCCTGGCTTATAACATAAAGATTGT 58.646 34.615 0.00 0.00 0.00 2.71
3038 3152 7.040409 GGACCCTGGCTTATAACATAAAGATTG 60.040 40.741 0.00 0.00 0.00 2.67
3039 3153 7.004691 GGACCCTGGCTTATAACATAAAGATT 58.995 38.462 0.00 0.00 0.00 2.40
3040 3154 6.332901 AGGACCCTGGCTTATAACATAAAGAT 59.667 38.462 0.00 0.00 0.00 2.40
3041 3155 5.670361 AGGACCCTGGCTTATAACATAAAGA 59.330 40.000 0.00 0.00 0.00 2.52
3042 3156 5.941788 AGGACCCTGGCTTATAACATAAAG 58.058 41.667 0.00 0.00 0.00 1.85
3043 3157 5.987019 AGGACCCTGGCTTATAACATAAA 57.013 39.130 0.00 0.00 0.00 1.40
3044 3158 5.430417 TCAAGGACCCTGGCTTATAACATAA 59.570 40.000 0.00 0.00 0.00 1.90
3045 3159 4.972568 TCAAGGACCCTGGCTTATAACATA 59.027 41.667 0.00 0.00 0.00 2.29
3046 3160 3.785887 TCAAGGACCCTGGCTTATAACAT 59.214 43.478 0.00 0.00 0.00 2.71
3047 3161 3.186283 TCAAGGACCCTGGCTTATAACA 58.814 45.455 0.00 0.00 0.00 2.41
3048 3162 3.433740 CCTCAAGGACCCTGGCTTATAAC 60.434 52.174 0.00 0.00 37.39 1.89
3049 3163 2.777692 CCTCAAGGACCCTGGCTTATAA 59.222 50.000 0.00 0.00 37.39 0.98
3050 3164 2.408565 CCTCAAGGACCCTGGCTTATA 58.591 52.381 0.00 0.00 37.39 0.98
3051 3165 1.216990 CCTCAAGGACCCTGGCTTAT 58.783 55.000 0.00 0.00 37.39 1.73
3052 3166 1.562672 GCCTCAAGGACCCTGGCTTA 61.563 60.000 0.00 0.00 40.36 3.09
3053 3167 2.911926 GCCTCAAGGACCCTGGCTT 61.912 63.158 0.00 0.00 40.36 4.35
3054 3168 3.334054 GCCTCAAGGACCCTGGCT 61.334 66.667 0.00 0.00 40.36 4.75
3055 3169 3.635268 CTGCCTCAAGGACCCTGGC 62.635 68.421 8.50 8.50 43.49 4.85
3056 3170 2.673523 CTGCCTCAAGGACCCTGG 59.326 66.667 0.00 0.00 37.39 4.45
3057 3171 2.045536 GCTGCCTCAAGGACCCTG 60.046 66.667 0.00 0.00 37.39 4.45
3058 3172 3.710722 CGCTGCCTCAAGGACCCT 61.711 66.667 0.00 0.00 37.39 4.34
3059 3173 3.706373 TCGCTGCCTCAAGGACCC 61.706 66.667 0.00 0.00 37.39 4.46
3060 3174 2.435059 GTCGCTGCCTCAAGGACC 60.435 66.667 0.00 0.00 37.39 4.46
3061 3175 1.446966 GAGTCGCTGCCTCAAGGAC 60.447 63.158 0.00 0.00 37.39 3.85
3062 3176 1.908299 TGAGTCGCTGCCTCAAGGA 60.908 57.895 6.20 0.00 36.07 3.36
3063 3177 1.739562 GTGAGTCGCTGCCTCAAGG 60.740 63.158 9.67 0.00 40.44 3.61
3064 3178 2.091112 CGTGAGTCGCTGCCTCAAG 61.091 63.158 9.67 8.38 40.44 3.02
3065 3179 2.049156 CGTGAGTCGCTGCCTCAA 60.049 61.111 9.67 0.00 40.44 3.02
3066 3180 4.056125 CCGTGAGTCGCTGCCTCA 62.056 66.667 4.75 4.75 36.63 3.86
3067 3181 4.803426 CCCGTGAGTCGCTGCCTC 62.803 72.222 1.58 0.00 38.35 4.70
3069 3183 4.373116 TTCCCGTGAGTCGCTGCC 62.373 66.667 1.58 0.00 38.35 4.85
3070 3184 2.564553 ATCTTCCCGTGAGTCGCTGC 62.565 60.000 1.58 0.00 38.35 5.25
3071 3185 0.738975 TATCTTCCCGTGAGTCGCTG 59.261 55.000 1.58 0.00 38.35 5.18
3072 3186 1.609555 GATATCTTCCCGTGAGTCGCT 59.390 52.381 1.58 0.00 38.35 4.93
3073 3187 1.337071 TGATATCTTCCCGTGAGTCGC 59.663 52.381 3.98 0.00 38.35 5.19
3074 3188 2.357952 TGTGATATCTTCCCGTGAGTCG 59.642 50.000 3.98 0.00 39.52 4.18
3075 3189 4.113354 GTTGTGATATCTTCCCGTGAGTC 58.887 47.826 3.98 0.00 0.00 3.36
3076 3190 3.513912 TGTTGTGATATCTTCCCGTGAGT 59.486 43.478 3.98 0.00 0.00 3.41
3077 3191 3.865745 GTGTTGTGATATCTTCCCGTGAG 59.134 47.826 3.98 0.00 0.00 3.51
3078 3192 3.259625 TGTGTTGTGATATCTTCCCGTGA 59.740 43.478 3.98 0.00 0.00 4.35
3079 3193 3.595173 TGTGTTGTGATATCTTCCCGTG 58.405 45.455 3.98 0.00 0.00 4.94
3080 3194 3.973206 TGTGTTGTGATATCTTCCCGT 57.027 42.857 3.98 0.00 0.00 5.28
3081 3195 4.253685 AGTTGTGTTGTGATATCTTCCCG 58.746 43.478 3.98 0.00 0.00 5.14
3082 3196 5.491982 AGAGTTGTGTTGTGATATCTTCCC 58.508 41.667 3.98 0.00 0.00 3.97
3083 3197 7.489757 GTCTAGAGTTGTGTTGTGATATCTTCC 59.510 40.741 3.98 0.00 0.00 3.46
3084 3198 8.029522 TGTCTAGAGTTGTGTTGTGATATCTTC 58.970 37.037 3.98 0.00 0.00 2.87
3085 3199 7.815068 GTGTCTAGAGTTGTGTTGTGATATCTT 59.185 37.037 3.98 0.00 0.00 2.40
3086 3200 7.039714 TGTGTCTAGAGTTGTGTTGTGATATCT 60.040 37.037 3.98 0.00 0.00 1.98
3087 3201 7.090808 TGTGTCTAGAGTTGTGTTGTGATATC 58.909 38.462 0.00 0.00 0.00 1.63
3088 3202 6.993079 TGTGTCTAGAGTTGTGTTGTGATAT 58.007 36.000 0.00 0.00 0.00 1.63
3089 3203 6.399639 TGTGTCTAGAGTTGTGTTGTGATA 57.600 37.500 0.00 0.00 0.00 2.15
3090 3204 5.276461 TGTGTCTAGAGTTGTGTTGTGAT 57.724 39.130 0.00 0.00 0.00 3.06
3091 3205 4.729227 TGTGTCTAGAGTTGTGTTGTGA 57.271 40.909 0.00 0.00 0.00 3.58
3092 3206 5.794687 TTTGTGTCTAGAGTTGTGTTGTG 57.205 39.130 0.00 0.00 0.00 3.33
3093 3207 8.500753 TTTATTTGTGTCTAGAGTTGTGTTGT 57.499 30.769 0.00 0.00 0.00 3.32
3094 3208 9.950680 ATTTTATTTGTGTCTAGAGTTGTGTTG 57.049 29.630 0.00 0.00 0.00 3.33
3142 3256 1.562672 GCCTCAAGGACCCTGGCTTA 61.563 60.000 0.00 0.00 40.36 3.09
3165 3424 1.229820 TTAGGAGGCTCCCAGGCAA 60.230 57.895 29.62 13.09 44.19 4.52
3190 3449 4.047059 GAGACCGCCGACGACCAA 62.047 66.667 0.00 0.00 43.93 3.67
3233 3492 2.414293 GCACCACTGACGACTACTACTG 60.414 54.545 0.00 0.00 0.00 2.74
3266 3526 2.947652 CTGCAATCAAATGACGGATCCT 59.052 45.455 10.75 0.00 0.00 3.24
3283 3543 0.396435 CCCTATACCCGATTGCTGCA 59.604 55.000 0.00 0.00 0.00 4.41
3304 3564 1.070289 CCCCACCGGAGTTAATCTAGC 59.930 57.143 9.46 0.00 0.00 3.42
3382 4704 0.673022 GTGCTGGCCTCTCAGTTGAG 60.673 60.000 3.32 2.69 43.36 3.02



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.