Multiple sequence alignment - TraesCS3D01G204000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G204000 chr3D 100.000 4171 0 0 1 4171 254338916 254343086 0.000000e+00 7703.0
1 TraesCS3D01G204000 chr3D 95.349 129 6 0 1 129 424623476 424623604 5.470000e-49 206.0
2 TraesCS3D01G204000 chr3D 93.233 133 8 1 1 133 499957392 499957261 1.180000e-45 195.0
3 TraesCS3D01G204000 chr3D 90.196 51 5 0 3559 3609 145566199 145566249 2.690000e-07 67.6
4 TraesCS3D01G204000 chr3D 100.000 28 0 0 140 167 595825556 595825583 8.000000e-03 52.8
5 TraesCS3D01G204000 chr3A 94.359 3049 79 33 604 3630 334694804 334691827 0.000000e+00 4591.0
6 TraesCS3D01G204000 chr3A 90.571 350 26 5 127 470 334701211 334700863 1.370000e-124 457.0
7 TraesCS3D01G204000 chr3B 95.260 2173 66 13 1414 3577 306558979 306561123 0.000000e+00 3408.0
8 TraesCS3D01G204000 chr3B 93.508 878 29 8 566 1422 306557936 306558806 0.000000e+00 1280.0
9 TraesCS3D01G204000 chr3B 86.010 386 22 5 3817 4170 306563108 306563493 6.540000e-103 385.0
10 TraesCS3D01G204000 chr3B 85.065 308 23 3 70 354 306557501 306557808 4.080000e-75 292.0
11 TraesCS3D01G204000 chr3B 78.443 167 36 0 2549 2715 418669381 418669547 4.410000e-20 110.0
12 TraesCS3D01G204000 chr3B 77.348 181 39 1 2535 2715 65237733 65237911 5.700000e-19 106.0
13 TraesCS3D01G204000 chr3B 92.500 40 3 0 4129 4168 140485049 140485088 1.620000e-04 58.4
14 TraesCS3D01G204000 chr6A 90.338 414 33 6 1563 1971 65556175 65555764 1.710000e-148 536.0
15 TraesCS3D01G204000 chr6A 87.714 350 35 8 1369 1712 48550349 48550696 6.500000e-108 401.0
16 TraesCS3D01G204000 chr6A 82.480 371 32 17 1148 1503 65556529 65556177 1.130000e-75 294.0
17 TraesCS3D01G204000 chr6A 93.233 133 9 0 1 133 107360781 107360913 3.290000e-46 196.0
18 TraesCS3D01G204000 chrUn 89.880 415 33 8 1563 1971 39185409 39185820 3.690000e-145 525.0
19 TraesCS3D01G204000 chrUn 82.527 372 36 13 1145 1503 39185052 39185407 2.440000e-77 300.0
20 TraesCS3D01G204000 chrUn 94.904 157 7 1 3632 3788 74119463 74119618 1.160000e-60 244.0
21 TraesCS3D01G204000 chrUn 93.798 129 8 0 1 129 91338418 91338290 1.180000e-45 195.0
22 TraesCS3D01G204000 chrUn 92.029 138 10 1 1 137 65532718 65532855 4.260000e-45 193.0
23 TraesCS3D01G204000 chrUn 91.971 137 11 0 2 138 358754041 358753905 4.260000e-45 193.0
24 TraesCS3D01G204000 chr5B 88.406 414 41 6 1563 1971 655712727 655712316 3.750000e-135 492.0
25 TraesCS3D01G204000 chr5B 96.078 153 5 1 3632 3784 276913594 276913745 8.950000e-62 248.0
26 TraesCS3D01G204000 chr5B 78.146 151 29 4 2567 2715 617167302 617167154 4.440000e-15 93.5
27 TraesCS3D01G204000 chr2B 89.714 350 28 8 1369 1712 745508722 745509069 1.380000e-119 440.0
28 TraesCS3D01G204000 chr2B 81.443 97 15 3 2621 2715 476414768 476414673 4.470000e-10 76.8
29 TraesCS3D01G204000 chr2B 95.745 47 2 0 3560 3606 585195720 585195766 4.470000e-10 76.8
30 TraesCS3D01G204000 chr4D 88.571 350 32 8 1369 1712 4290746 4290399 6.450000e-113 418.0
31 TraesCS3D01G204000 chr4D 92.593 135 10 0 1 135 7595696 7595562 1.180000e-45 195.0
32 TraesCS3D01G204000 chr2D 95.513 156 7 0 3632 3787 275232204 275232049 2.490000e-62 250.0
33 TraesCS3D01G204000 chr2D 94.231 52 3 0 3558 3609 533780296 533780245 3.460000e-11 80.5
34 TraesCS3D01G204000 chr6B 95.484 155 7 0 3632 3786 226362492 226362646 8.950000e-62 248.0
35 TraesCS3D01G204000 chr6B 76.842 95 22 0 2621 2715 213480677 213480583 2.000000e-03 54.7
36 TraesCS3D01G204000 chr7A 95.455 154 7 0 3632 3785 593795444 593795597 3.220000e-61 246.0
37 TraesCS3D01G204000 chr7A 95.484 155 6 1 3632 3786 701294346 701294499 3.220000e-61 246.0
38 TraesCS3D01G204000 chr5A 95.455 154 7 0 3632 3785 420094038 420094191 3.220000e-61 246.0
39 TraesCS3D01G204000 chr4A 95.455 154 7 0 3632 3785 440086070 440085917 3.220000e-61 246.0
40 TraesCS3D01G204000 chr4A 91.892 148 10 2 1369 1515 281593229 281593083 5.470000e-49 206.0
41 TraesCS3D01G204000 chr4A 90.909 99 8 1 1615 1712 524287370 524287468 9.410000e-27 132.0
42 TraesCS3D01G204000 chr7B 90.503 179 13 2 3632 3806 31807583 31807405 2.510000e-57 233.0
43 TraesCS3D01G204000 chr7B 91.971 137 11 0 2 138 619322622 619322486 4.260000e-45 193.0
44 TraesCS3D01G204000 chr7D 87.234 188 15 6 1333 1515 635928800 635928617 5.470000e-49 206.0
45 TraesCS3D01G204000 chr5D 87.234 188 14 5 1333 1515 462908592 462908774 5.470000e-49 206.0
46 TraesCS3D01G204000 chr6D 93.798 129 8 0 1 129 66254700 66254828 1.180000e-45 195.0
47 TraesCS3D01G204000 chr6D 96.774 31 1 0 140 170 405088749 405088719 8.000000e-03 52.8
48 TraesCS3D01G204000 chr1A 78.947 152 26 6 2567 2715 312722154 312722006 9.540000e-17 99.0
49 TraesCS3D01G204000 chr1A 78.289 152 27 6 2567 2715 20084160 20084308 4.440000e-15 93.5
50 TraesCS3D01G204000 chr1A 93.750 48 3 0 3562 3609 540895955 540895908 5.780000e-09 73.1
51 TraesCS3D01G204000 chr1A 91.667 48 4 0 3562 3609 540917458 540917411 2.690000e-07 67.6
52 TraesCS3D01G204000 chr2A 92.157 51 4 0 3559 3609 762601571 762601521 5.780000e-09 73.1
53 TraesCS3D01G204000 chr2A 86.364 66 7 2 3548 3612 729831767 729831831 2.080000e-08 71.3
54 TraesCS3D01G204000 chr1D 90.566 53 4 1 3559 3611 340178792 340178843 7.480000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G204000 chr3D 254338916 254343086 4170 False 7703.00 7703 100.00000 1 4171 1 chr3D.!!$F2 4170
1 TraesCS3D01G204000 chr3A 334691827 334694804 2977 True 4591.00 4591 94.35900 604 3630 1 chr3A.!!$R1 3026
2 TraesCS3D01G204000 chr3B 306557501 306563493 5992 False 1341.25 3408 89.96075 70 4170 4 chr3B.!!$F4 4100
3 TraesCS3D01G204000 chr6A 65555764 65556529 765 True 415.00 536 86.40900 1148 1971 2 chr6A.!!$R1 823
4 TraesCS3D01G204000 chrUn 39185052 39185820 768 False 412.50 525 86.20350 1145 1971 2 chrUn.!!$F3 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.042188 CGCAAGTCACCAAACGTCAG 60.042 55.0 0.00 0.00 0.0 3.51 F
196 197 0.179029 AAGTCACCAAACGTCAGGGG 60.179 55.0 10.56 6.66 0.0 4.79 F
472 518 0.236973 GCTACCTACCTAGTACGCGC 59.763 60.0 5.73 0.00 0.0 6.86 F
1217 1290 0.389948 GAGTCGGGCAAATCGTCAGT 60.390 55.0 0.00 0.00 0.0 3.41 F
1225 1298 0.652592 CAAATCGTCAGTGATCCGGC 59.347 55.0 0.00 0.00 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 1204 0.251165 CACCCCCAACACCCAGTTAG 60.251 60.000 0.00 0.0 38.74 2.34 R
1862 2139 1.228245 GCCCAGGACTGAGCAAACA 60.228 57.895 0.65 0.0 34.24 2.83 R
1980 2257 1.843368 AGGCAACACAGCAGCAATAT 58.157 45.000 0.00 0.0 41.41 1.28 R
2648 2930 1.106351 ACGTGAGTGGCCAAATTGCA 61.106 50.000 7.24 0.0 46.97 4.08 R
3191 3473 1.894466 CAATCAAAGTGTGATGCCCCA 59.106 47.619 0.00 0.0 46.80 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.997107 TTCAAATGGACTATCACATACGTAC 57.003 36.000 0.00 0.00 0.00 3.67
26 27 6.203647 TCAAATGGACTATCACATACGTACG 58.796 40.000 15.01 15.01 0.00 3.67
27 28 5.762825 AATGGACTATCACATACGTACGT 57.237 39.130 25.98 25.98 0.00 3.57
28 29 6.866010 AATGGACTATCACATACGTACGTA 57.134 37.500 28.62 28.62 34.87 3.57
29 30 7.444629 AATGGACTATCACATACGTACGTAT 57.555 36.000 30.28 30.28 41.49 3.06
30 31 8.552083 AATGGACTATCACATACGTACGTATA 57.448 34.615 33.73 22.33 39.07 1.47
31 32 8.728337 ATGGACTATCACATACGTACGTATAT 57.272 34.615 33.73 26.33 39.07 0.86
32 33 9.822185 ATGGACTATCACATACGTACGTATATA 57.178 33.333 33.73 26.09 39.07 0.86
33 34 9.305925 TGGACTATCACATACGTACGTATATAG 57.694 37.037 31.78 31.78 39.07 1.31
34 35 9.521503 GGACTATCACATACGTACGTATATAGA 57.478 37.037 35.71 30.90 39.07 1.98
36 37 9.860898 ACTATCACATACGTACGTATATAGACA 57.139 33.333 35.71 24.99 39.07 3.41
79 80 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
80 81 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
83 84 8.039603 TCATTTTGCTTCGTATGTAGTCATTT 57.960 30.769 0.00 0.00 35.70 2.32
84 85 7.962373 TCATTTTGCTTCGTATGTAGTCATTTG 59.038 33.333 0.00 0.00 35.70 2.32
92 93 9.478019 CTTCGTATGTAGTCATTTGTTGAAATC 57.522 33.333 0.00 0.00 35.70 2.17
94 95 9.214957 TCGTATGTAGTCATTTGTTGAAATCTT 57.785 29.630 0.00 0.00 35.70 2.40
150 151 5.461032 TTAATCATGTCCAACCAAACACC 57.539 39.130 0.00 0.00 0.00 4.16
166 167 0.796312 CACCGTGTAGTGCATCAACC 59.204 55.000 0.00 0.00 0.00 3.77
189 190 1.082756 GAGCGCAAGTCACCAAACG 60.083 57.895 11.47 0.00 41.68 3.60
193 194 0.042188 CGCAAGTCACCAAACGTCAG 60.042 55.000 0.00 0.00 0.00 3.51
196 197 0.179029 AAGTCACCAAACGTCAGGGG 60.179 55.000 10.56 6.66 0.00 4.79
200 201 1.064611 TCACCAAACGTCAGGGGAAAA 60.065 47.619 8.59 0.00 33.51 2.29
242 260 4.582701 TCAAACTACCTGCAAAACATGG 57.417 40.909 0.00 0.00 0.00 3.66
244 262 5.133941 TCAAACTACCTGCAAAACATGGTA 58.866 37.500 0.00 0.86 33.51 3.25
253 271 7.731054 ACCTGCAAAACATGGTATTTTTCTTA 58.269 30.769 0.00 0.00 30.76 2.10
267 285 8.557029 GGTATTTTTCTTATACAATCAGGTCCG 58.443 37.037 0.00 0.00 31.53 4.79
279 297 2.160205 TCAGGTCCGACTAAGTCACAG 58.840 52.381 0.00 0.00 32.09 3.66
283 301 2.531206 GTCCGACTAAGTCACAGATGC 58.469 52.381 0.00 0.00 32.09 3.91
318 342 2.435372 AGGGCACAAAGTTTCTGTCA 57.565 45.000 0.00 0.00 0.00 3.58
340 364 1.613925 GAGCTCATATGCACCCTCGTA 59.386 52.381 9.40 0.00 34.99 3.43
343 367 3.071602 AGCTCATATGCACCCTCGTAAAT 59.928 43.478 0.00 0.00 34.99 1.40
354 378 7.051623 TGCACCCTCGTAAATAAATATTGACT 58.948 34.615 0.00 0.00 0.00 3.41
355 379 8.205512 TGCACCCTCGTAAATAAATATTGACTA 58.794 33.333 0.00 0.00 0.00 2.59
356 380 9.048446 GCACCCTCGTAAATAAATATTGACTAA 57.952 33.333 0.00 0.00 0.00 2.24
371 395 9.935682 AATATTGACTAATTCTAAACATGCGTG 57.064 29.630 3.82 3.82 0.00 5.34
372 396 5.216566 TGACTAATTCTAAACATGCGTGC 57.783 39.130 5.64 0.00 0.00 5.34
373 397 4.693095 TGACTAATTCTAAACATGCGTGCA 59.307 37.500 5.64 0.00 0.00 4.57
374 398 5.180304 TGACTAATTCTAAACATGCGTGCAA 59.820 36.000 5.64 0.00 0.00 4.08
375 399 6.007936 ACTAATTCTAAACATGCGTGCAAA 57.992 33.333 5.64 0.00 0.00 3.68
376 400 6.620678 ACTAATTCTAAACATGCGTGCAAAT 58.379 32.000 5.64 0.00 0.00 2.32
377 401 7.757526 ACTAATTCTAAACATGCGTGCAAATA 58.242 30.769 5.64 0.00 0.00 1.40
378 402 8.405531 ACTAATTCTAAACATGCGTGCAAATAT 58.594 29.630 5.64 0.00 0.00 1.28
379 403 9.236691 CTAATTCTAAACATGCGTGCAAATATT 57.763 29.630 5.64 2.40 0.00 1.28
380 404 7.684062 ATTCTAAACATGCGTGCAAATATTC 57.316 32.000 5.64 0.00 0.00 1.75
381 405 6.188400 TCTAAACATGCGTGCAAATATTCA 57.812 33.333 5.64 0.00 0.00 2.57
382 406 6.794374 TCTAAACATGCGTGCAAATATTCAT 58.206 32.000 5.64 0.00 0.00 2.57
383 407 5.954434 AAACATGCGTGCAAATATTCATC 57.046 34.783 5.64 0.00 0.00 2.92
384 408 4.635833 ACATGCGTGCAAATATTCATCA 57.364 36.364 5.64 0.00 0.00 3.07
385 409 4.996344 ACATGCGTGCAAATATTCATCAA 58.004 34.783 5.64 0.00 0.00 2.57
386 410 5.038683 ACATGCGTGCAAATATTCATCAAG 58.961 37.500 5.64 0.00 0.00 3.02
387 411 4.961435 TGCGTGCAAATATTCATCAAGA 57.039 36.364 0.00 0.00 0.00 3.02
388 412 5.307926 TGCGTGCAAATATTCATCAAGAA 57.692 34.783 0.00 0.00 41.28 2.52
389 413 5.707931 TGCGTGCAAATATTCATCAAGAAA 58.292 33.333 0.00 0.00 40.22 2.52
390 414 5.572511 TGCGTGCAAATATTCATCAAGAAAC 59.427 36.000 0.00 0.00 40.22 2.78
391 415 5.572511 GCGTGCAAATATTCATCAAGAAACA 59.427 36.000 0.00 0.00 40.22 2.83
392 416 6.254157 GCGTGCAAATATTCATCAAGAAACAT 59.746 34.615 0.00 0.00 40.22 2.71
393 417 7.514125 GCGTGCAAATATTCATCAAGAAACATC 60.514 37.037 0.00 0.00 40.22 3.06
394 418 7.699391 CGTGCAAATATTCATCAAGAAACATCT 59.301 33.333 0.00 0.00 40.22 2.90
395 419 9.362539 GTGCAAATATTCATCAAGAAACATCTT 57.637 29.630 0.00 0.00 40.22 2.40
396 420 9.361315 TGCAAATATTCATCAAGAAACATCTTG 57.639 29.630 11.41 11.41 46.11 3.02
469 515 6.388435 AAATCTTGCTACCTACCTAGTACG 57.612 41.667 0.00 0.00 0.00 3.67
470 516 3.209410 TCTTGCTACCTACCTAGTACGC 58.791 50.000 0.00 0.00 0.00 4.42
471 517 1.586422 TGCTACCTACCTAGTACGCG 58.414 55.000 3.53 3.53 0.00 6.01
472 518 0.236973 GCTACCTACCTAGTACGCGC 59.763 60.000 5.73 0.00 0.00 6.86
473 519 1.586422 CTACCTACCTAGTACGCGCA 58.414 55.000 5.73 0.00 0.00 6.09
474 520 1.942657 CTACCTACCTAGTACGCGCAA 59.057 52.381 5.73 0.00 0.00 4.85
475 521 1.176527 ACCTACCTAGTACGCGCAAA 58.823 50.000 5.73 0.00 0.00 3.68
476 522 1.545582 ACCTACCTAGTACGCGCAAAA 59.454 47.619 5.73 0.00 0.00 2.44
477 523 2.029110 ACCTACCTAGTACGCGCAAAAA 60.029 45.455 5.73 0.00 0.00 1.94
501 547 5.857822 AAACACGTCCTAGTATGCTTTTC 57.142 39.130 0.00 0.00 0.00 2.29
509 555 5.291371 GTCCTAGTATGCTTTTCGGACTTTC 59.709 44.000 11.33 0.00 37.17 2.62
545 593 7.924947 ACTCCTACTACAGTACTTGTGTTTTTC 59.075 37.037 0.00 0.00 41.10 2.29
546 594 7.212274 TCCTACTACAGTACTTGTGTTTTTCC 58.788 38.462 0.00 0.00 41.10 3.13
547 595 7.070322 TCCTACTACAGTACTTGTGTTTTTCCT 59.930 37.037 0.00 0.00 41.10 3.36
548 596 7.384387 CCTACTACAGTACTTGTGTTTTTCCTC 59.616 40.741 0.00 0.00 41.10 3.71
549 597 6.885922 ACTACAGTACTTGTGTTTTTCCTCT 58.114 36.000 0.00 0.00 41.10 3.69
550 598 6.985059 ACTACAGTACTTGTGTTTTTCCTCTC 59.015 38.462 0.00 0.00 41.10 3.20
551 599 5.990668 ACAGTACTTGTGTTTTTCCTCTCT 58.009 37.500 0.00 0.00 38.99 3.10
552 600 6.415573 ACAGTACTTGTGTTTTTCCTCTCTT 58.584 36.000 0.00 0.00 38.99 2.85
553 601 6.884836 ACAGTACTTGTGTTTTTCCTCTCTTT 59.115 34.615 0.00 0.00 38.99 2.52
554 602 7.393515 ACAGTACTTGTGTTTTTCCTCTCTTTT 59.606 33.333 0.00 0.00 38.99 2.27
555 603 8.244113 CAGTACTTGTGTTTTTCCTCTCTTTTT 58.756 33.333 0.00 0.00 0.00 1.94
573 621 2.335316 TTTTGCGGGTGAGTACTTGT 57.665 45.000 0.00 0.00 0.00 3.16
574 622 1.588674 TTTGCGGGTGAGTACTTGTG 58.411 50.000 0.00 0.00 0.00 3.33
575 623 0.466543 TTGCGGGTGAGTACTTGTGT 59.533 50.000 0.00 0.00 0.00 3.72
576 624 0.466543 TGCGGGTGAGTACTTGTGTT 59.533 50.000 0.00 0.00 0.00 3.32
577 625 1.134340 TGCGGGTGAGTACTTGTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
578 626 1.944709 GCGGGTGAGTACTTGTGTTTT 59.055 47.619 0.00 0.00 0.00 2.43
579 627 2.356695 GCGGGTGAGTACTTGTGTTTTT 59.643 45.455 0.00 0.00 0.00 1.94
580 628 3.547413 GCGGGTGAGTACTTGTGTTTTTC 60.547 47.826 0.00 0.00 0.00 2.29
607 662 2.412089 CGACCTCATGACCGAAGTTTTC 59.588 50.000 0.00 0.00 0.00 2.29
623 678 1.632018 TTTCCCCCGAATCGCATCCT 61.632 55.000 0.00 0.00 0.00 3.24
742 805 3.322466 CTCCGGTTCTGCCCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
879 942 3.701542 TCTACTGCAAGGTTCGATCTGAT 59.298 43.478 0.00 0.00 39.30 2.90
1137 1202 8.868522 ATTGTGCATATATTGGCTAACTATGT 57.131 30.769 12.74 0.00 0.00 2.29
1138 1203 9.958180 ATTGTGCATATATTGGCTAACTATGTA 57.042 29.630 12.74 7.90 0.00 2.29
1139 1204 8.771920 TGTGCATATATTGGCTAACTATGTAC 57.228 34.615 19.11 19.11 34.54 2.90
1217 1290 0.389948 GAGTCGGGCAAATCGTCAGT 60.390 55.000 0.00 0.00 0.00 3.41
1225 1298 0.652592 CAAATCGTCAGTGATCCGGC 59.347 55.000 0.00 0.00 0.00 6.13
1297 1378 4.335400 TGTAGATTCGCAAGCATGGATA 57.665 40.909 0.00 0.00 37.18 2.59
1302 1383 5.526115 AGATTCGCAAGCATGGATAATTTG 58.474 37.500 0.00 0.00 37.18 2.32
1971 2248 2.619646 TCGGCGCTATGTGTCTGTTATA 59.380 45.455 7.64 0.00 0.00 0.98
1972 2249 3.254903 TCGGCGCTATGTGTCTGTTATAT 59.745 43.478 7.64 0.00 0.00 0.86
1973 2250 3.364920 CGGCGCTATGTGTCTGTTATATG 59.635 47.826 7.64 0.00 0.00 1.78
1974 2251 4.556233 GGCGCTATGTGTCTGTTATATGA 58.444 43.478 7.64 0.00 0.00 2.15
1975 2252 4.623167 GGCGCTATGTGTCTGTTATATGAG 59.377 45.833 7.64 0.00 0.00 2.90
1976 2253 5.223382 GCGCTATGTGTCTGTTATATGAGT 58.777 41.667 0.00 0.00 0.00 3.41
1977 2254 5.117745 GCGCTATGTGTCTGTTATATGAGTG 59.882 44.000 0.00 0.00 0.00 3.51
1978 2255 6.209361 CGCTATGTGTCTGTTATATGAGTGT 58.791 40.000 0.00 0.00 0.00 3.55
1979 2256 6.697455 CGCTATGTGTCTGTTATATGAGTGTT 59.303 38.462 0.00 0.00 0.00 3.32
1980 2257 7.860872 CGCTATGTGTCTGTTATATGAGTGTTA 59.139 37.037 0.00 0.00 0.00 2.41
1981 2258 9.698309 GCTATGTGTCTGTTATATGAGTGTTAT 57.302 33.333 0.00 0.00 0.00 1.89
2043 2320 6.644347 ACACTTATCCACAGGACTTGAATAG 58.356 40.000 0.00 0.00 32.98 1.73
2070 2349 2.967459 TTTGTGTGTGCGCTATCTTG 57.033 45.000 9.73 0.00 0.00 3.02
2269 2548 2.304180 AGAAAGAGGGTGGTCATGAGTG 59.696 50.000 0.00 0.00 0.00 3.51
2310 2589 7.276878 GTCCTGATTAGTTTCTTTAGACTCAGC 59.723 40.741 0.00 0.00 0.00 4.26
2418 2700 3.403038 CTCTCGTTCCAAACTGTCCAAT 58.597 45.455 0.00 0.00 0.00 3.16
2477 2759 6.648879 TTAGGGATGTTTATGGCTTTATGC 57.351 37.500 0.00 0.00 41.94 3.14
2623 2905 2.124151 GCACCCCGGATTCATGCT 60.124 61.111 0.73 0.00 33.44 3.79
2648 2930 3.827505 TGCAAAGAGGGCAAAGACT 57.172 47.368 0.00 0.00 38.54 3.24
2672 2954 0.681564 TTTGGCCACTCACGTTTGGT 60.682 50.000 3.88 0.00 35.09 3.67
2676 2958 0.951558 GCCACTCACGTTTGGTCAAT 59.048 50.000 8.92 0.00 35.09 2.57
2745 3027 7.070821 TCCTAAAGTAACAGAAACCTCTCTTGT 59.929 37.037 0.00 0.00 0.00 3.16
2755 3037 7.990886 ACAGAAACCTCTCTTGTAATACAAACA 59.009 33.333 7.30 0.00 37.69 2.83
2919 3201 2.080286 ACCAGATGCGTGTCTTGTAC 57.920 50.000 0.00 0.00 0.00 2.90
2920 3202 1.618837 ACCAGATGCGTGTCTTGTACT 59.381 47.619 0.00 0.00 0.00 2.73
2921 3203 1.995484 CCAGATGCGTGTCTTGTACTG 59.005 52.381 0.00 0.00 0.00 2.74
2922 3204 2.610479 CCAGATGCGTGTCTTGTACTGT 60.610 50.000 0.00 0.00 0.00 3.55
2923 3205 3.059884 CAGATGCGTGTCTTGTACTGTT 58.940 45.455 0.00 0.00 0.00 3.16
2924 3206 3.059884 AGATGCGTGTCTTGTACTGTTG 58.940 45.455 0.00 0.00 0.00 3.33
2925 3207 2.303163 TGCGTGTCTTGTACTGTTGT 57.697 45.000 0.00 0.00 0.00 3.32
2926 3208 3.439895 TGCGTGTCTTGTACTGTTGTA 57.560 42.857 0.00 0.00 0.00 2.41
3191 3473 5.865085 TGAGTAGCAACCTTGTTGATAACT 58.135 37.500 10.94 9.33 0.00 2.24
3278 3560 2.268076 ATTCTGTTGTGGGCGCACC 61.268 57.895 28.67 16.04 40.81 5.01
3304 3586 8.872845 CAATAAGGAGTAAACAATTTGGATTGC 58.127 33.333 0.78 0.03 45.25 3.56
3364 3646 5.984725 TGGAGTTTGTGTCTAAGAACAAGA 58.015 37.500 0.00 0.00 37.57 3.02
3365 3647 6.411376 TGGAGTTTGTGTCTAAGAACAAGAA 58.589 36.000 0.00 0.00 37.57 2.52
3366 3648 6.538742 TGGAGTTTGTGTCTAAGAACAAGAAG 59.461 38.462 0.00 0.00 37.57 2.85
3414 3696 3.539604 GTGCTGCCATAGACTTGATTCT 58.460 45.455 0.00 0.00 0.00 2.40
3465 3748 5.221342 TGTTTGTTTCGGCCACTATCAATTT 60.221 36.000 2.24 0.00 0.00 1.82
3541 3824 0.828762 TTGGCTGGCTGCTGTTGAAT 60.829 50.000 16.14 0.00 42.39 2.57
3566 3849 4.493547 TGGCAGTTTCTTGAAACAGTTTG 58.506 39.130 22.92 15.18 35.20 2.93
3568 3851 4.381505 GGCAGTTTCTTGAAACAGTTTGGA 60.382 41.667 22.92 0.00 35.20 3.53
3575 3858 8.406297 GTTTCTTGAAACAGTTTGGATAAGTCT 58.594 33.333 18.05 0.00 33.08 3.24
3576 3859 7.730364 TCTTGAAACAGTTTGGATAAGTCTC 57.270 36.000 2.34 0.00 0.00 3.36
3577 3860 7.279615 TCTTGAAACAGTTTGGATAAGTCTCA 58.720 34.615 2.34 0.00 0.00 3.27
3578 3861 7.442364 TCTTGAAACAGTTTGGATAAGTCTCAG 59.558 37.037 2.34 0.00 0.00 3.35
3579 3862 6.591935 TGAAACAGTTTGGATAAGTCTCAGT 58.408 36.000 2.34 0.00 0.00 3.41
3580 3863 6.706270 TGAAACAGTTTGGATAAGTCTCAGTC 59.294 38.462 2.34 0.00 0.00 3.51
3581 3864 4.810790 ACAGTTTGGATAAGTCTCAGTCG 58.189 43.478 0.00 0.00 0.00 4.18
3627 3911 5.880332 AGTCGAATTCCTTTAAGCTTGCATA 59.120 36.000 9.86 0.00 0.00 3.14
3628 3912 6.543831 AGTCGAATTCCTTTAAGCTTGCATAT 59.456 34.615 9.86 0.00 0.00 1.78
3629 3913 7.715249 AGTCGAATTCCTTTAAGCTTGCATATA 59.285 33.333 9.86 0.00 0.00 0.86
3630 3914 7.798982 GTCGAATTCCTTTAAGCTTGCATATAC 59.201 37.037 9.86 0.00 0.00 1.47
3631 3915 7.715249 TCGAATTCCTTTAAGCTTGCATATACT 59.285 33.333 9.86 0.00 0.00 2.12
3632 3916 8.012241 CGAATTCCTTTAAGCTTGCATATACTC 58.988 37.037 9.86 0.00 0.00 2.59
3633 3917 7.751768 ATTCCTTTAAGCTTGCATATACTCC 57.248 36.000 9.86 0.00 0.00 3.85
3634 3918 6.500589 TCCTTTAAGCTTGCATATACTCCT 57.499 37.500 9.86 0.00 0.00 3.69
3635 3919 7.612065 TCCTTTAAGCTTGCATATACTCCTA 57.388 36.000 9.86 0.00 0.00 2.94
3636 3920 8.029782 TCCTTTAAGCTTGCATATACTCCTAA 57.970 34.615 9.86 0.00 0.00 2.69
3637 3921 8.491134 TCCTTTAAGCTTGCATATACTCCTAAA 58.509 33.333 9.86 0.00 0.00 1.85
3638 3922 9.289782 CCTTTAAGCTTGCATATACTCCTAAAT 57.710 33.333 9.86 0.00 0.00 1.40
3644 3928 9.799106 AGCTTGCATATACTCCTAAATATTTGT 57.201 29.630 11.05 2.83 0.00 2.83
3670 3954 9.436957 TCTTTCTAGACATTTCAAATGGACTAC 57.563 33.333 14.70 1.26 0.00 2.73
3671 3955 8.561738 TTTCTAGACATTTCAAATGGACTACC 57.438 34.615 14.70 0.00 0.00 3.18
3684 3968 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3685 3969 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3714 3998 9.601217 AGACATATTTTAAAGCGTAGATTCACT 57.399 29.630 0.00 0.00 31.23 3.41
3715 3999 9.851043 GACATATTTTAAAGCGTAGATTCACTC 57.149 33.333 0.00 0.00 31.23 3.51
3716 4000 9.378551 ACATATTTTAAAGCGTAGATTCACTCA 57.621 29.630 0.00 0.00 31.23 3.41
3721 4005 8.948853 TTTAAAGCGTAGATTCACTCATTTTG 57.051 30.769 0.00 0.00 31.23 2.44
3722 4006 4.606457 AGCGTAGATTCACTCATTTTGC 57.394 40.909 0.00 0.00 0.00 3.68
3723 4007 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
3724 4008 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
3725 4009 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
3726 4010 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
3727 4011 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3728 4012 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3729 4013 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3730 4014 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3731 4015 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3732 4016 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3733 4017 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3734 4018 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3735 4019 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3736 4020 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3737 4021 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3738 4022 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3739 4023 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3740 4024 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3741 4025 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3742 4026 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3743 4027 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
3744 4028 5.047872 TGCTCCGTATGTAGTCACTTGTTAA 60.048 40.000 0.00 0.00 0.00 2.01
3745 4029 5.865552 GCTCCGTATGTAGTCACTTGTTAAA 59.134 40.000 0.00 0.00 0.00 1.52
3746 4030 6.366877 GCTCCGTATGTAGTCACTTGTTAAAA 59.633 38.462 0.00 0.00 0.00 1.52
3747 4031 7.064253 GCTCCGTATGTAGTCACTTGTTAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
3748 4032 9.577110 CTCCGTATGTAGTCACTTGTTAAAATA 57.423 33.333 0.00 0.00 0.00 1.40
3778 4062 9.855021 ATAAAGACAAATATTTTGAAACGGAGG 57.145 29.630 6.96 0.00 0.00 4.30
3779 4063 6.267496 AGACAAATATTTTGAAACGGAGGG 57.733 37.500 6.96 0.00 0.00 4.30
3780 4064 6.007703 AGACAAATATTTTGAAACGGAGGGA 58.992 36.000 6.96 0.00 0.00 4.20
3841 6041 8.178313 TCTTATCTACTTTGTCACTTGACTGA 57.822 34.615 10.63 0.00 44.99 3.41
3857 6057 4.285020 TGACTGAGACTTGATCTAGCCAT 58.715 43.478 3.93 0.00 38.00 4.40
3911 6117 4.713553 ACCCGTTATGCATCAACATGATA 58.286 39.130 0.19 0.00 34.28 2.15
3918 6124 8.220434 CGTTATGCATCAACATGATATTCGTTA 58.780 33.333 0.19 0.00 34.28 3.18
3965 6195 0.999712 AAACTCCATTGATCCGGGGT 59.000 50.000 0.00 0.00 37.71 4.95
3966 6196 0.255890 AACTCCATTGATCCGGGGTG 59.744 55.000 0.00 0.00 35.65 4.61
3977 6207 2.511600 CGGGGTGATCCGCAACTC 60.512 66.667 0.00 0.00 45.44 3.01
3988 6218 1.674057 CGCAACTCAAGTCCCCTCT 59.326 57.895 0.00 0.00 0.00 3.69
4030 6260 2.279935 TGAACATGTAAGCCGGGTTT 57.720 45.000 26.02 4.70 0.00 3.27
4036 6266 0.037590 TGTAAGCCGGGTTTGCTGAT 59.962 50.000 26.02 0.00 39.48 2.90
4039 6269 1.173913 AAGCCGGGTTTGCTGATAAC 58.826 50.000 14.44 0.00 39.48 1.89
4055 6285 5.405269 GCTGATAACGCATTTGAAAAGGTTT 59.595 36.000 0.00 0.00 0.00 3.27
4062 6292 5.641636 ACGCATTTGAAAAGGTTTTTGTTCT 59.358 32.000 0.00 0.00 0.00 3.01
4097 6327 4.499696 GCACACATTTTGCCTCTGTAAAGT 60.500 41.667 0.00 0.00 33.58 2.66
4111 6341 7.499232 GCCTCTGTAAAGTTGGATGTACATAAT 59.501 37.037 8.71 0.00 0.00 1.28
4115 6345 9.988350 CTGTAAAGTTGGATGTACATAATCAAC 57.012 33.333 25.67 25.67 0.00 3.18
4116 6346 9.508642 TGTAAAGTTGGATGTACATAATCAACA 57.491 29.630 29.88 18.40 0.00 3.33
4124 6354 5.137524 TGTACATAATCAACATCAACGCG 57.862 39.130 3.53 3.53 0.00 6.01
4146 6377 5.454232 GCGTGTACACATAAATAAACATGCC 59.546 40.000 24.98 0.00 41.65 4.40
4159 6390 3.932545 AACATGCCGACAAATAGCAAA 57.067 38.095 0.00 0.00 40.46 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.693978 CGTACGTATGTGATAGTCCATTTGAA 59.306 38.462 7.22 0.00 0.00 2.69
3 4 5.975344 ACGTACGTATGTGATAGTCCATTTG 59.025 40.000 21.41 0.00 0.00 2.32
4 5 6.140303 ACGTACGTATGTGATAGTCCATTT 57.860 37.500 21.41 0.00 0.00 2.32
5 6 5.762825 ACGTACGTATGTGATAGTCCATT 57.237 39.130 21.41 0.00 0.00 3.16
6 7 8.728337 ATATACGTACGTATGTGATAGTCCAT 57.272 34.615 38.36 22.77 40.98 3.41
7 8 9.305925 CTATATACGTACGTATGTGATAGTCCA 57.694 37.037 38.36 21.78 40.98 4.02
8 9 9.521503 TCTATATACGTACGTATGTGATAGTCC 57.478 37.037 38.36 6.88 40.98 3.85
10 11 9.860898 TGTCTATATACGTACGTATGTGATAGT 57.139 33.333 38.36 20.92 40.98 2.12
43 44 9.415544 GAAGCAAAATGAGTGAATCTACATTTT 57.584 29.630 0.00 0.00 46.58 1.82
44 45 7.752239 CGAAGCAAAATGAGTGAATCTACATTT 59.248 33.333 0.00 0.00 42.25 2.32
45 46 7.094634 ACGAAGCAAAATGAGTGAATCTACATT 60.095 33.333 0.00 0.00 34.99 2.71
46 47 6.372659 ACGAAGCAAAATGAGTGAATCTACAT 59.627 34.615 0.00 0.00 0.00 2.29
47 48 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
48 49 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
49 50 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
50 51 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
51 52 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
52 53 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
53 54 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
54 55 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
55 56 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
56 57 6.163476 TGACTACATACGAAGCAAAATGAGT 58.837 36.000 0.00 0.00 0.00 3.41
57 58 6.647212 TGACTACATACGAAGCAAAATGAG 57.353 37.500 0.00 0.00 0.00 2.90
58 59 7.609760 AATGACTACATACGAAGCAAAATGA 57.390 32.000 0.00 0.00 35.50 2.57
59 60 7.750458 ACAAATGACTACATACGAAGCAAAATG 59.250 33.333 0.00 0.00 35.50 2.32
60 61 7.816640 ACAAATGACTACATACGAAGCAAAAT 58.183 30.769 0.00 0.00 35.50 1.82
61 62 7.197071 ACAAATGACTACATACGAAGCAAAA 57.803 32.000 0.00 0.00 35.50 2.44
62 63 6.795098 ACAAATGACTACATACGAAGCAAA 57.205 33.333 0.00 0.00 35.50 3.68
63 64 6.425417 TCAACAAATGACTACATACGAAGCAA 59.575 34.615 0.00 0.00 35.50 3.91
64 65 5.929415 TCAACAAATGACTACATACGAAGCA 59.071 36.000 0.00 0.00 35.50 3.91
65 66 6.403333 TCAACAAATGACTACATACGAAGC 57.597 37.500 0.00 0.00 35.50 3.86
66 67 9.478019 GATTTCAACAAATGACTACATACGAAG 57.522 33.333 0.00 0.00 37.92 3.79
67 68 9.214957 AGATTTCAACAAATGACTACATACGAA 57.785 29.630 0.00 0.00 37.92 3.85
68 69 8.771920 AGATTTCAACAAATGACTACATACGA 57.228 30.769 0.00 0.00 37.92 3.43
97 98 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
114 115 6.248569 ACATGATTAATACTCCCTCCGTTT 57.751 37.500 0.00 0.00 0.00 3.60
150 151 0.992072 CTCGGTTGATGCACTACACG 59.008 55.000 0.00 0.00 0.00 4.49
166 167 3.832171 GTGACTTGCGCTCGCTCG 61.832 66.667 9.73 8.52 42.51 5.03
196 197 6.765915 AGACTGCATTAGGGAAGAATTTTC 57.234 37.500 0.00 0.00 0.00 2.29
200 201 6.753913 TGATAGACTGCATTAGGGAAGAAT 57.246 37.500 0.00 0.00 0.00 2.40
242 260 9.321562 TCGGACCTGATTGTATAAGAAAAATAC 57.678 33.333 0.00 0.00 0.00 1.89
244 262 8.047310 AGTCGGACCTGATTGTATAAGAAAAAT 58.953 33.333 4.14 0.00 0.00 1.82
253 271 4.954202 TGACTTAGTCGGACCTGATTGTAT 59.046 41.667 7.92 0.00 34.95 2.29
267 285 4.629200 CCTCTTTGCATCTGTGACTTAGTC 59.371 45.833 5.27 5.27 0.00 2.59
318 342 0.390860 GAGGGTGCATATGAGCTCGT 59.609 55.000 14.07 14.07 34.99 4.18
354 378 9.232082 GAATATTTGCACGCATGTTTAGAATTA 57.768 29.630 0.00 0.00 0.00 1.40
355 379 7.758980 TGAATATTTGCACGCATGTTTAGAATT 59.241 29.630 0.00 0.00 0.00 2.17
356 380 7.257003 TGAATATTTGCACGCATGTTTAGAAT 58.743 30.769 0.00 0.00 0.00 2.40
357 381 6.616017 TGAATATTTGCACGCATGTTTAGAA 58.384 32.000 0.00 0.00 0.00 2.10
358 382 6.188400 TGAATATTTGCACGCATGTTTAGA 57.812 33.333 0.00 0.00 0.00 2.10
359 383 6.692249 TGATGAATATTTGCACGCATGTTTAG 59.308 34.615 0.00 0.00 0.00 1.85
360 384 6.558909 TGATGAATATTTGCACGCATGTTTA 58.441 32.000 0.00 0.00 0.00 2.01
361 385 5.409211 TGATGAATATTTGCACGCATGTTT 58.591 33.333 0.00 0.00 0.00 2.83
362 386 4.996344 TGATGAATATTTGCACGCATGTT 58.004 34.783 0.00 0.00 0.00 2.71
363 387 4.635833 TGATGAATATTTGCACGCATGT 57.364 36.364 0.00 0.00 0.00 3.21
364 388 5.275494 TCTTGATGAATATTTGCACGCATG 58.725 37.500 0.00 0.00 0.00 4.06
365 389 5.503662 TCTTGATGAATATTTGCACGCAT 57.496 34.783 0.00 0.00 0.00 4.73
366 390 4.961435 TCTTGATGAATATTTGCACGCA 57.039 36.364 0.00 0.00 0.00 5.24
367 391 5.572511 TGTTTCTTGATGAATATTTGCACGC 59.427 36.000 0.00 0.00 34.24 5.34
368 392 7.699391 AGATGTTTCTTGATGAATATTTGCACG 59.301 33.333 0.00 0.00 34.24 5.34
369 393 8.922058 AGATGTTTCTTGATGAATATTTGCAC 57.078 30.769 0.00 0.00 34.24 4.57
384 408 6.455360 TTGAACTGCTTCAAGATGTTTCTT 57.545 33.333 0.00 0.00 40.76 2.52
385 409 6.127647 TGTTTGAACTGCTTCAAGATGTTTCT 60.128 34.615 1.91 0.00 45.20 2.52
386 410 6.035843 TGTTTGAACTGCTTCAAGATGTTTC 58.964 36.000 1.91 0.00 45.20 2.78
387 411 5.964758 TGTTTGAACTGCTTCAAGATGTTT 58.035 33.333 1.91 0.00 45.20 2.83
388 412 5.581126 TGTTTGAACTGCTTCAAGATGTT 57.419 34.783 1.91 0.00 45.20 2.71
389 413 5.779529 ATGTTTGAACTGCTTCAAGATGT 57.220 34.783 1.91 0.00 45.20 3.06
390 414 6.444633 AGAATGTTTGAACTGCTTCAAGATG 58.555 36.000 1.91 0.00 45.20 2.90
391 415 6.263842 TGAGAATGTTTGAACTGCTTCAAGAT 59.736 34.615 1.91 0.00 45.20 2.40
392 416 5.589855 TGAGAATGTTTGAACTGCTTCAAGA 59.410 36.000 1.91 0.00 45.20 3.02
393 417 5.824429 TGAGAATGTTTGAACTGCTTCAAG 58.176 37.500 1.91 0.00 45.20 3.02
394 418 5.833406 TGAGAATGTTTGAACTGCTTCAA 57.167 34.783 0.00 0.00 43.37 2.69
395 419 5.532032 TGATGAGAATGTTTGAACTGCTTCA 59.468 36.000 0.00 0.00 34.39 3.02
396 420 6.005583 TGATGAGAATGTTTGAACTGCTTC 57.994 37.500 0.00 0.00 0.00 3.86
397 421 6.585695 ATGATGAGAATGTTTGAACTGCTT 57.414 33.333 0.00 0.00 0.00 3.91
398 422 7.692460 TTATGATGAGAATGTTTGAACTGCT 57.308 32.000 0.00 0.00 0.00 4.24
399 423 8.746922 TTTTATGATGAGAATGTTTGAACTGC 57.253 30.769 0.00 0.00 0.00 4.40
407 431 8.649841 CGTGCAAATTTTTATGATGAGAATGTT 58.350 29.630 0.00 0.00 0.00 2.71
408 432 7.201461 GCGTGCAAATTTTTATGATGAGAATGT 60.201 33.333 0.00 0.00 0.00 2.71
409 433 7.114920 GCGTGCAAATTTTTATGATGAGAATG 58.885 34.615 0.00 0.00 0.00 2.67
410 434 6.812656 TGCGTGCAAATTTTTATGATGAGAAT 59.187 30.769 0.00 0.00 0.00 2.40
411 435 6.155136 TGCGTGCAAATTTTTATGATGAGAA 58.845 32.000 0.00 0.00 0.00 2.87
416 440 5.868258 TGACATGCGTGCAAATTTTTATGAT 59.132 32.000 5.64 0.00 0.00 2.45
426 450 2.859526 TTTCTTGACATGCGTGCAAA 57.140 40.000 5.64 0.00 0.00 3.68
450 496 2.032204 CGCGTACTAGGTAGGTAGCAAG 60.032 54.545 0.00 0.00 0.00 4.01
451 497 1.942657 CGCGTACTAGGTAGGTAGCAA 59.057 52.381 0.00 0.00 0.00 3.91
453 499 0.236973 GCGCGTACTAGGTAGGTAGC 59.763 60.000 8.43 0.00 0.00 3.58
477 523 6.565247 CGAAAAGCATACTAGGACGTGTTTTT 60.565 38.462 0.00 3.54 37.58 1.94
478 524 5.107220 CGAAAAGCATACTAGGACGTGTTTT 60.107 40.000 0.00 0.00 0.00 2.43
491 537 8.736751 TTTTTATGAAAGTCCGAAAAGCATAC 57.263 30.769 0.00 0.00 0.00 2.39
518 564 8.469309 AAAACACAAGTACTGTAGTAGGAGTA 57.531 34.615 0.00 0.00 36.10 2.59
553 601 2.356382 CACAAGTACTCACCCGCAAAAA 59.644 45.455 0.00 0.00 0.00 1.94
554 602 1.944024 CACAAGTACTCACCCGCAAAA 59.056 47.619 0.00 0.00 0.00 2.44
555 603 1.134340 ACACAAGTACTCACCCGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
556 604 0.466543 ACACAAGTACTCACCCGCAA 59.533 50.000 0.00 0.00 0.00 4.85
557 605 0.466543 AACACAAGTACTCACCCGCA 59.533 50.000 0.00 0.00 0.00 5.69
558 606 1.589803 AAACACAAGTACTCACCCGC 58.410 50.000 0.00 0.00 0.00 6.13
559 607 3.002965 GGAAAAACACAAGTACTCACCCG 59.997 47.826 0.00 0.00 0.00 5.28
560 608 3.002965 CGGAAAAACACAAGTACTCACCC 59.997 47.826 0.00 0.00 0.00 4.61
561 609 3.872771 TCGGAAAAACACAAGTACTCACC 59.127 43.478 0.00 0.00 0.00 4.02
562 610 4.569564 AGTCGGAAAAACACAAGTACTCAC 59.430 41.667 0.00 0.00 0.00 3.51
563 611 4.761975 AGTCGGAAAAACACAAGTACTCA 58.238 39.130 0.00 0.00 0.00 3.41
564 612 4.085210 CGAGTCGGAAAAACACAAGTACTC 60.085 45.833 4.10 0.00 0.00 2.59
565 613 3.800506 CGAGTCGGAAAAACACAAGTACT 59.199 43.478 4.10 0.00 0.00 2.73
566 614 3.798337 TCGAGTCGGAAAAACACAAGTAC 59.202 43.478 13.54 0.00 0.00 2.73
567 615 3.798337 GTCGAGTCGGAAAAACACAAGTA 59.202 43.478 13.54 0.00 0.00 2.24
568 616 2.606272 GTCGAGTCGGAAAAACACAAGT 59.394 45.455 13.54 0.00 0.00 3.16
569 617 2.033151 GGTCGAGTCGGAAAAACACAAG 60.033 50.000 13.54 0.00 0.00 3.16
570 618 1.935199 GGTCGAGTCGGAAAAACACAA 59.065 47.619 13.54 0.00 0.00 3.33
571 619 1.137479 AGGTCGAGTCGGAAAAACACA 59.863 47.619 13.54 0.00 0.00 3.72
572 620 1.791204 GAGGTCGAGTCGGAAAAACAC 59.209 52.381 13.54 0.94 0.00 3.32
573 621 1.409790 TGAGGTCGAGTCGGAAAAACA 59.590 47.619 13.54 3.61 0.00 2.83
574 622 2.144482 TGAGGTCGAGTCGGAAAAAC 57.856 50.000 13.54 2.51 0.00 2.43
575 623 2.297880 TCATGAGGTCGAGTCGGAAAAA 59.702 45.455 13.54 0.00 0.00 1.94
576 624 1.890489 TCATGAGGTCGAGTCGGAAAA 59.110 47.619 13.54 0.00 0.00 2.29
577 625 1.201647 GTCATGAGGTCGAGTCGGAAA 59.798 52.381 13.54 0.00 0.00 3.13
578 626 0.809385 GTCATGAGGTCGAGTCGGAA 59.191 55.000 13.54 0.00 0.00 4.30
579 627 1.030488 GGTCATGAGGTCGAGTCGGA 61.030 60.000 13.54 0.00 0.00 4.55
580 628 1.433879 GGTCATGAGGTCGAGTCGG 59.566 63.158 13.54 0.00 0.00 4.79
607 662 1.004918 GTAGGATGCGATTCGGGGG 60.005 63.158 8.34 0.00 0.00 5.40
742 805 1.262640 GGTTAGAAGGGGACTCGGCA 61.263 60.000 0.00 0.00 42.68 5.69
879 942 4.508861 GCGGACGCATATAGGAAGTTAAAA 59.491 41.667 12.31 0.00 41.49 1.52
1123 1188 6.386050 ACCCAGTTAGTACATAGTTAGCCAAT 59.614 38.462 0.00 0.00 0.00 3.16
1137 1202 1.364269 CCCCCAACACCCAGTTAGTA 58.636 55.000 0.00 0.00 38.74 1.82
1138 1203 0.699922 ACCCCCAACACCCAGTTAGT 60.700 55.000 0.00 0.00 38.74 2.24
1139 1204 0.251165 CACCCCCAACACCCAGTTAG 60.251 60.000 0.00 0.00 38.74 2.34
1217 1290 2.727392 CCTAACACGGGCCGGATCA 61.727 63.158 31.78 11.58 0.00 2.92
1302 1383 4.068599 GGATCAATCCTTAGCTACCAAGC 58.931 47.826 0.00 0.00 45.33 4.01
1378 1467 3.565482 TGGCATTCACAAGAAGTCAACTC 59.435 43.478 0.00 0.00 37.14 3.01
1658 1930 5.412594 TCAACAAATTCCATAGACAGCAGAC 59.587 40.000 0.00 0.00 0.00 3.51
1663 1935 7.161773 ACCATTCAACAAATTCCATAGACAG 57.838 36.000 0.00 0.00 0.00 3.51
1862 2139 1.228245 GCCCAGGACTGAGCAAACA 60.228 57.895 0.65 0.00 34.24 2.83
1971 2248 5.188434 ACACAGCAGCAATATAACACTCAT 58.812 37.500 0.00 0.00 0.00 2.90
1972 2249 4.578871 ACACAGCAGCAATATAACACTCA 58.421 39.130 0.00 0.00 0.00 3.41
1973 2250 5.327091 CAACACAGCAGCAATATAACACTC 58.673 41.667 0.00 0.00 0.00 3.51
1974 2251 4.379813 GCAACACAGCAGCAATATAACACT 60.380 41.667 0.00 0.00 0.00 3.55
1975 2252 3.853671 GCAACACAGCAGCAATATAACAC 59.146 43.478 0.00 0.00 0.00 3.32
1976 2253 3.119531 GGCAACACAGCAGCAATATAACA 60.120 43.478 0.00 0.00 35.83 2.41
1977 2254 3.129287 AGGCAACACAGCAGCAATATAAC 59.871 43.478 0.00 0.00 41.41 1.89
1978 2255 3.355378 AGGCAACACAGCAGCAATATAA 58.645 40.909 0.00 0.00 41.41 0.98
1979 2256 3.003394 AGGCAACACAGCAGCAATATA 57.997 42.857 0.00 0.00 41.41 0.86
1980 2257 1.843368 AGGCAACACAGCAGCAATAT 58.157 45.000 0.00 0.00 41.41 1.28
1981 2258 2.488204 TAGGCAACACAGCAGCAATA 57.512 45.000 0.00 0.00 41.41 1.90
1982 2259 1.843368 ATAGGCAACACAGCAGCAAT 58.157 45.000 0.00 0.00 41.41 3.56
2064 2343 4.251543 TCACTGTCGTTTCTGCAAGATA 57.748 40.909 0.00 0.00 46.36 1.98
2070 2349 2.607635 TCTGTTTCACTGTCGTTTCTGC 59.392 45.455 0.00 0.00 0.00 4.26
2269 2548 4.628963 TCAGGACTACTTAACCCCAAAC 57.371 45.455 0.00 0.00 0.00 2.93
2310 2589 7.522374 GTCTATTTTGTTTACAGCAGAAGGAG 58.478 38.462 0.00 0.00 0.00 3.69
2590 2872 3.055094 GGGGTGCATCTCTTCTTCAAGTA 60.055 47.826 0.00 0.00 0.00 2.24
2592 2874 2.363683 GGGGTGCATCTCTTCTTCAAG 58.636 52.381 0.00 0.00 0.00 3.02
2648 2930 1.106351 ACGTGAGTGGCCAAATTGCA 61.106 50.000 7.24 0.00 46.97 4.08
2672 2954 4.602259 GGGCCGCCGATCGATTGA 62.602 66.667 18.66 0.00 41.67 2.57
2919 3201 7.368480 TCATCTTCATCAACATGTACAACAG 57.632 36.000 0.00 0.00 0.00 3.16
2920 3202 7.445096 AGTTCATCTTCATCAACATGTACAACA 59.555 33.333 0.00 0.00 0.00 3.33
2921 3203 7.810658 AGTTCATCTTCATCAACATGTACAAC 58.189 34.615 0.00 0.00 0.00 3.32
2922 3204 7.984422 AGTTCATCTTCATCAACATGTACAA 57.016 32.000 0.00 0.00 0.00 2.41
2923 3205 9.671279 ATTAGTTCATCTTCATCAACATGTACA 57.329 29.630 0.00 0.00 0.00 2.90
2924 3206 9.926751 CATTAGTTCATCTTCATCAACATGTAC 57.073 33.333 0.00 0.00 0.00 2.90
2925 3207 8.615211 GCATTAGTTCATCTTCATCAACATGTA 58.385 33.333 0.00 0.00 0.00 2.29
2926 3208 7.338703 AGCATTAGTTCATCTTCATCAACATGT 59.661 33.333 0.00 0.00 0.00 3.21
3191 3473 1.894466 CAATCAAAGTGTGATGCCCCA 59.106 47.619 0.00 0.00 46.80 4.96
3278 3560 8.872845 GCAATCCAAATTGTTTACTCCTTATTG 58.127 33.333 0.00 0.00 43.54 1.90
3341 3623 5.984725 TCTTGTTCTTAGACACAAACTCCA 58.015 37.500 9.78 0.00 32.53 3.86
3351 3633 5.470437 CCTGTTTCCCTTCTTGTTCTTAGAC 59.530 44.000 0.00 0.00 0.00 2.59
3364 3646 4.030216 ACACATGTTTTCCTGTTTCCCTT 58.970 39.130 0.00 0.00 0.00 3.95
3365 3647 3.642141 ACACATGTTTTCCTGTTTCCCT 58.358 40.909 0.00 0.00 0.00 4.20
3366 3648 4.099419 AGAACACATGTTTTCCTGTTTCCC 59.901 41.667 18.77 0.00 38.56 3.97
3414 3696 4.241590 CAAGGTAAAGCTTGCACATTCA 57.758 40.909 0.00 0.00 0.00 2.57
3465 3748 0.178068 GCTCACTGGGCTATCCGAAA 59.822 55.000 0.00 0.00 38.76 3.46
3493 3776 1.139256 TGCAGTACCGTTTTGACCTGA 59.861 47.619 0.00 0.00 0.00 3.86
3576 3859 5.645624 ACATAATGAAGTCTCAGTCGACTG 58.354 41.667 34.76 34.76 43.14 3.51
3577 3860 5.650266 AGACATAATGAAGTCTCAGTCGACT 59.350 40.000 13.58 13.58 45.73 4.18
3578 3861 5.885881 AGACATAATGAAGTCTCAGTCGAC 58.114 41.667 7.70 7.70 40.96 4.20
3579 3862 6.516739 AAGACATAATGAAGTCTCAGTCGA 57.483 37.500 0.00 0.00 43.88 4.20
3580 3863 7.476667 ACTAAGACATAATGAAGTCTCAGTCG 58.523 38.462 0.00 0.00 38.66 4.18
3581 3864 8.850454 GACTAAGACATAATGAAGTCTCAGTC 57.150 38.462 9.40 9.40 46.87 3.51
3644 3928 9.436957 GTAGTCCATTTGAAATGTCTAGAAAGA 57.563 33.333 15.93 1.84 0.00 2.52
3645 3929 8.669243 GGTAGTCCATTTGAAATGTCTAGAAAG 58.331 37.037 15.93 0.00 0.00 2.62
3646 3930 8.160765 TGGTAGTCCATTTGAAATGTCTAGAAA 58.839 33.333 15.93 0.00 39.03 2.52
3647 3931 7.606456 GTGGTAGTCCATTTGAAATGTCTAGAA 59.394 37.037 15.93 7.22 46.20 2.10
3648 3932 7.103641 GTGGTAGTCCATTTGAAATGTCTAGA 58.896 38.462 15.93 4.16 46.20 2.43
3649 3933 6.878923 TGTGGTAGTCCATTTGAAATGTCTAG 59.121 38.462 15.93 1.90 46.20 2.43
3650 3934 6.774673 TGTGGTAGTCCATTTGAAATGTCTA 58.225 36.000 15.93 13.97 46.20 2.59
3651 3935 5.630121 TGTGGTAGTCCATTTGAAATGTCT 58.370 37.500 15.93 14.81 46.20 3.41
3652 3936 5.957842 TGTGGTAGTCCATTTGAAATGTC 57.042 39.130 15.93 9.10 46.20 3.06
3653 3937 6.093495 CGTATGTGGTAGTCCATTTGAAATGT 59.907 38.462 15.93 1.43 46.20 2.71
3654 3938 6.458206 CCGTATGTGGTAGTCCATTTGAAATG 60.458 42.308 10.84 10.84 46.20 2.32
3655 3939 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
3656 3940 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3657 3941 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3658 3942 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
3659 3943 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3660 3944 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3661 3945 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3662 3946 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3663 3947 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3664 3948 4.806330 CATACATCCGTATGTGGTAGTCC 58.194 47.826 3.56 0.00 46.70 3.85
3688 3972 9.601217 AGTGAATCTACGCTTTAAAATATGTCT 57.399 29.630 0.00 0.00 0.00 3.41
3689 3973 9.851043 GAGTGAATCTACGCTTTAAAATATGTC 57.149 33.333 0.00 0.00 0.00 3.06
3690 3974 9.378551 TGAGTGAATCTACGCTTTAAAATATGT 57.621 29.630 0.00 0.00 0.00 2.29
3695 3979 9.393249 CAAAATGAGTGAATCTACGCTTTAAAA 57.607 29.630 0.00 0.00 0.00 1.52
3696 3980 7.537306 GCAAAATGAGTGAATCTACGCTTTAAA 59.463 33.333 0.00 0.00 0.00 1.52
3697 3981 7.021196 GCAAAATGAGTGAATCTACGCTTTAA 58.979 34.615 0.00 0.00 0.00 1.52
3698 3982 6.371548 AGCAAAATGAGTGAATCTACGCTTTA 59.628 34.615 0.00 0.00 0.00 1.85
3699 3983 5.182001 AGCAAAATGAGTGAATCTACGCTTT 59.818 36.000 0.00 0.00 0.00 3.51
3700 3984 4.697352 AGCAAAATGAGTGAATCTACGCTT 59.303 37.500 0.00 0.00 0.00 4.68
3701 3985 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
3702 3986 4.494855 GGAGCAAAATGAGTGAATCTACGC 60.495 45.833 0.00 0.00 0.00 4.42
3703 3987 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
3704 3988 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3705 3989 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3706 3990 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3707 3991 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3708 3992 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3709 3993 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3710 3994 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3711 3995 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3712 3996 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3713 3997 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3714 3998 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3715 3999 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3716 4000 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3717 4001 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3718 4002 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3719 4003 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3720 4004 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3721 4005 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3722 4006 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
3752 4036 9.855021 CCTCCGTTTCAAAATATTTGTCTTTAT 57.145 29.630 0.39 0.00 0.00 1.40
3753 4037 8.301002 CCCTCCGTTTCAAAATATTTGTCTTTA 58.699 33.333 0.39 0.00 0.00 1.85
3754 4038 7.014808 TCCCTCCGTTTCAAAATATTTGTCTTT 59.985 33.333 0.39 0.00 0.00 2.52
3755 4039 6.492087 TCCCTCCGTTTCAAAATATTTGTCTT 59.508 34.615 0.39 0.00 0.00 3.01
3756 4040 6.007703 TCCCTCCGTTTCAAAATATTTGTCT 58.992 36.000 0.39 0.00 0.00 3.41
3757 4041 6.072119 ACTCCCTCCGTTTCAAAATATTTGTC 60.072 38.462 0.39 0.00 0.00 3.18
3758 4042 5.773176 ACTCCCTCCGTTTCAAAATATTTGT 59.227 36.000 0.39 0.00 0.00 2.83
3759 4043 6.267496 ACTCCCTCCGTTTCAAAATATTTG 57.733 37.500 0.39 0.00 0.00 2.32
3760 4044 7.399634 TCTACTCCCTCCGTTTCAAAATATTT 58.600 34.615 0.00 0.00 0.00 1.40
3761 4045 6.954232 TCTACTCCCTCCGTTTCAAAATATT 58.046 36.000 0.00 0.00 0.00 1.28
3762 4046 6.555463 TCTACTCCCTCCGTTTCAAAATAT 57.445 37.500 0.00 0.00 0.00 1.28
3763 4047 6.555463 ATCTACTCCCTCCGTTTCAAAATA 57.445 37.500 0.00 0.00 0.00 1.40
3764 4048 4.903045 TCTACTCCCTCCGTTTCAAAAT 57.097 40.909 0.00 0.00 0.00 1.82
3765 4049 4.903045 ATCTACTCCCTCCGTTTCAAAA 57.097 40.909 0.00 0.00 0.00 2.44
3766 4050 4.619863 CGAATCTACTCCCTCCGTTTCAAA 60.620 45.833 0.00 0.00 0.00 2.69
3767 4051 3.119245 CGAATCTACTCCCTCCGTTTCAA 60.119 47.826 0.00 0.00 0.00 2.69
3768 4052 2.426024 CGAATCTACTCCCTCCGTTTCA 59.574 50.000 0.00 0.00 0.00 2.69
3769 4053 2.426381 ACGAATCTACTCCCTCCGTTTC 59.574 50.000 0.00 0.00 0.00 2.78
3770 4054 2.454538 ACGAATCTACTCCCTCCGTTT 58.545 47.619 0.00 0.00 0.00 3.60
3771 4055 2.140839 ACGAATCTACTCCCTCCGTT 57.859 50.000 0.00 0.00 0.00 4.44
3772 4056 3.287867 TTACGAATCTACTCCCTCCGT 57.712 47.619 0.00 0.00 0.00 4.69
3773 4057 4.337555 TCTTTTACGAATCTACTCCCTCCG 59.662 45.833 0.00 0.00 0.00 4.63
3774 4058 5.848833 TCTTTTACGAATCTACTCCCTCC 57.151 43.478 0.00 0.00 0.00 4.30
3775 4059 8.719560 ATTTTCTTTTACGAATCTACTCCCTC 57.280 34.615 0.00 0.00 0.00 4.30
3776 4060 9.163899 GAATTTTCTTTTACGAATCTACTCCCT 57.836 33.333 0.00 0.00 0.00 4.20
3777 4061 9.163899 AGAATTTTCTTTTACGAATCTACTCCC 57.836 33.333 0.00 0.00 32.55 4.30
3841 6041 5.946942 TCAAGAATGGCTAGATCAAGTCT 57.053 39.130 0.00 0.00 41.11 3.24
3857 6057 6.507900 CCTAGCTGAGAAATCGTATCAAGAA 58.492 40.000 0.00 0.00 0.00 2.52
3911 6117 5.461078 GCGTGGAGTTGTATACATAACGAAT 59.539 40.000 20.75 3.20 32.79 3.34
3918 6124 3.521560 CACAGCGTGGAGTTGTATACAT 58.478 45.455 6.36 0.00 42.55 2.29
3965 6195 0.036388 GGGACTTGAGTTGCGGATCA 60.036 55.000 0.00 0.00 0.00 2.92
3966 6196 0.744771 GGGGACTTGAGTTGCGGATC 60.745 60.000 0.00 0.00 0.00 3.36
3977 6207 2.636830 CACTAATGCAGAGGGGACTTG 58.363 52.381 0.00 0.00 44.43 3.16
3988 6218 8.744568 TCATTGTATTTGTATCCACTAATGCA 57.255 30.769 0.00 0.00 39.38 3.96
4014 6244 0.251165 AGCAAACCCGGCTTACATGT 60.251 50.000 2.69 2.69 38.81 3.21
4036 6266 6.969828 ACAAAAACCTTTTCAAATGCGTTA 57.030 29.167 0.00 0.00 0.00 3.18
4039 6269 6.105657 AGAACAAAAACCTTTTCAAATGCG 57.894 33.333 0.00 0.00 0.00 4.73
4062 6292 8.163408 AGGCAAAATGTGTGCTAGGAATATATA 58.837 33.333 0.00 0.00 41.88 0.86
4083 6313 4.098914 ACATCCAACTTTACAGAGGCAA 57.901 40.909 0.00 0.00 0.00 4.52
4084 6314 3.788227 ACATCCAACTTTACAGAGGCA 57.212 42.857 0.00 0.00 0.00 4.75
4097 6327 7.678454 GCGTTGATGTTGATTATGTACATCCAA 60.678 37.037 12.68 12.09 44.68 3.53
4111 6341 1.523515 GTGTACACGCGTTGATGTTGA 59.476 47.619 10.22 0.00 0.00 3.18
4115 6345 3.982127 TTATGTGTACACGCGTTGATG 57.018 42.857 20.61 0.00 0.00 3.07
4116 6346 6.650239 TTATTTATGTGTACACGCGTTGAT 57.350 33.333 20.61 10.06 0.00 2.57
4117 6347 6.073927 TGTTTATTTATGTGTACACGCGTTGA 60.074 34.615 20.61 0.00 0.00 3.18
4118 6348 6.072098 TGTTTATTTATGTGTACACGCGTTG 58.928 36.000 20.61 8.21 0.00 4.10
4119 6349 6.225703 TGTTTATTTATGTGTACACGCGTT 57.774 33.333 20.61 3.81 0.00 4.84
4121 6351 5.168856 GCATGTTTATTTATGTGTACACGCG 59.831 40.000 20.61 3.53 0.00 6.01
4122 6352 5.454232 GGCATGTTTATTTATGTGTACACGC 59.546 40.000 20.61 12.30 0.00 5.34
4123 6353 5.675012 CGGCATGTTTATTTATGTGTACACG 59.325 40.000 20.61 3.21 0.00 4.49
4124 6354 6.685403 GTCGGCATGTTTATTTATGTGTACAC 59.315 38.462 19.36 19.36 0.00 2.90
4146 6377 3.848019 GTGCATGACTTTGCTATTTGTCG 59.152 43.478 0.00 0.00 43.18 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.