Multiple sequence alignment - TraesCS3D01G203700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G203700 chr3D 100.000 9532 0 0 1 9532 253565168 253555637 0.000000e+00 17603.0
1 TraesCS3D01G203700 chr3D 97.316 6260 140 17 1349 7592 12622021 12628268 0.000000e+00 10604.0
2 TraesCS3D01G203700 chr3D 97.283 552 12 3 7593 8142 12628235 12628785 0.000000e+00 933.0
3 TraesCS3D01G203700 chr3D 89.419 482 45 6 9055 9532 323697408 323696929 3.810000e-168 603.0
4 TraesCS3D01G203700 chr3D 85.827 508 61 9 4220 4717 593112096 593112602 6.560000e-146 529.0
5 TraesCS3D01G203700 chr3D 88.114 387 35 9 5061 5443 609890859 609890480 5.250000e-122 449.0
6 TraesCS3D01G203700 chr3D 89.412 340 34 2 1620 1958 202383266 202382928 2.460000e-115 427.0
7 TraesCS3D01G203700 chr3D 89.069 247 14 4 4608 4852 609891185 609890950 2.600000e-75 294.0
8 TraesCS3D01G203700 chr3D 85.202 223 27 4 7924 8142 581532435 581532655 3.460000e-54 224.0
9 TraesCS3D01G203700 chr3D 95.833 48 2 0 2364 2411 110407062 110407109 2.850000e-10 78.7
10 TraesCS3D01G203700 chr3D 92.308 52 2 1 7020 7069 164939368 164939317 1.330000e-08 73.1
11 TraesCS3D01G203700 chr5D 97.259 6785 132 19 1364 8142 482208881 482215617 0.000000e+00 11450.0
12 TraesCS3D01G203700 chr5D 83.679 1397 206 21 5445 6831 162818654 162820038 0.000000e+00 1297.0
13 TraesCS3D01G203700 chr5D 84.203 671 60 14 4711 5350 561649268 561649923 2.280000e-170 610.0
14 TraesCS3D01G203700 chr5D 81.923 520 63 16 4203 4717 561648717 561649210 2.480000e-110 411.0
15 TraesCS3D01G203700 chr5D 93.478 276 15 3 1372 1646 87843682 87843409 3.200000e-109 407.0
16 TraesCS3D01G203700 chr5D 92.780 277 17 2 1372 1646 494400356 494400081 1.930000e-106 398.0
17 TraesCS3D01G203700 chr5D 92.963 270 18 1 1353 1621 494400659 494400390 8.970000e-105 392.0
18 TraesCS3D01G203700 chr5D 92.593 270 20 0 1352 1621 394041575 394041306 1.160000e-103 388.0
19 TraesCS3D01G203700 chr7D 93.369 1704 73 14 1991 3688 559674290 559672621 0.000000e+00 2484.0
20 TraesCS3D01G203700 chr7D 84.632 1399 189 17 5448 6831 199601750 199600363 0.000000e+00 1369.0
21 TraesCS3D01G203700 chr7D 90.249 482 42 5 9053 9532 440207583 440207105 8.130000e-175 625.0
22 TraesCS3D01G203700 chr7D 90.021 481 38 5 9055 9532 577944521 577944048 1.760000e-171 614.0
23 TraesCS3D01G203700 chr7D 95.652 345 12 3 7115 7458 559671446 559671104 1.400000e-152 551.0
24 TraesCS3D01G203700 chr7D 87.968 374 36 7 1616 1983 40156596 40156966 5.290000e-117 433.0
25 TraesCS3D01G203700 chr7D 92.222 270 20 1 1353 1621 168799299 168799030 1.940000e-101 381.0
26 TraesCS3D01G203700 chr7D 94.086 186 10 1 6854 7038 559671629 559671444 2.030000e-71 281.0
27 TraesCS3D01G203700 chr7D 86.364 264 9 3 7451 7712 559667457 559667219 7.340000e-66 263.0
28 TraesCS3D01G203700 chr7D 92.683 41 2 1 4058 4098 46085769 46085808 3.720000e-04 58.4
29 TraesCS3D01G203700 chr4A 97.031 1381 38 3 4067 5445 520182948 520184327 0.000000e+00 2320.0
30 TraesCS3D01G203700 chr4A 96.710 1155 26 2 1992 3142 520180789 520181935 0.000000e+00 1912.0
31 TraesCS3D01G203700 chr4A 95.312 896 32 4 3140 4029 520182058 520182949 0.000000e+00 1413.0
32 TraesCS3D01G203700 chr4A 93.190 558 25 4 7595 8142 520190505 520191059 0.000000e+00 808.0
33 TraesCS3D01G203700 chr4A 85.372 752 87 16 2654 3393 680351463 680350723 0.000000e+00 758.0
34 TraesCS3D01G203700 chr4A 87.896 347 35 6 1620 1962 520180337 520180680 1.490000e-107 401.0
35 TraesCS3D01G203700 chr4A 95.349 172 5 2 7281 7452 520188459 520188627 4.390000e-68 270.0
36 TraesCS3D01G203700 chr4A 95.714 140 6 0 7451 7590 520190397 520190536 9.630000e-55 226.0
37 TraesCS3D01G203700 chr4A 77.857 420 50 27 7760 8142 693792602 693793015 4.480000e-53 220.0
38 TraesCS3D01G203700 chr4A 74.589 547 82 29 7644 8142 553075691 553075154 4.550000e-43 187.0
39 TraesCS3D01G203700 chr4A 83.898 118 14 2 4856 4973 277990312 277990424 3.640000e-19 108.0
40 TraesCS3D01G203700 chr4A 89.333 75 8 0 4043 4117 680590877 680590951 2.830000e-15 95.3
41 TraesCS3D01G203700 chr4A 95.833 48 2 0 2364 2411 504861352 504861399 2.850000e-10 78.7
42 TraesCS3D01G203700 chr3B 91.506 1401 67 23 1 1356 309408475 309409868 0.000000e+00 1881.0
43 TraesCS3D01G203700 chr3B 86.512 645 68 12 4711 5350 295019099 295019729 0.000000e+00 691.0
44 TraesCS3D01G203700 chr3B 93.682 459 16 7 8211 8665 309409938 309410387 0.000000e+00 675.0
45 TraesCS3D01G203700 chr3B 85.462 509 60 7 4220 4717 795377917 795378422 1.420000e-142 518.0
46 TraesCS3D01G203700 chr3B 95.806 310 6 4 8755 9058 309410379 309410687 2.390000e-135 494.0
47 TraesCS3D01G203700 chr3B 100.000 38 0 0 8181 8218 309409884 309409921 4.780000e-08 71.3
48 TraesCS3D01G203700 chr4B 88.881 1394 134 16 5440 6829 389437344 389435968 0.000000e+00 1696.0
49 TraesCS3D01G203700 chr4B 91.079 482 38 3 9052 9532 627247407 627247884 0.000000e+00 647.0
50 TraesCS3D01G203700 chr4B 84.615 351 41 10 4305 4649 668626965 668627308 4.260000e-88 337.0
51 TraesCS3D01G203700 chr4B 84.444 180 21 5 4998 5175 142422109 142421935 4.580000e-38 171.0
52 TraesCS3D01G203700 chr4D 87.455 1395 160 15 5444 6831 47135099 47133713 0.000000e+00 1592.0
53 TraesCS3D01G203700 chr4D 89.558 565 39 12 6892 7443 191269116 191269673 0.000000e+00 699.0
54 TraesCS3D01G203700 chr4D 86.650 397 41 9 5051 5443 191267653 191268041 6.840000e-116 429.0
55 TraesCS3D01G203700 chr4D 92.989 271 17 1 1353 1621 462818506 462818776 2.500000e-105 394.0
56 TraesCS3D01G203700 chr7B 85.111 1397 190 14 5444 6830 747426991 747428379 0.000000e+00 1411.0
57 TraesCS3D01G203700 chr7B 85.386 958 86 28 4205 5139 64484050 64483124 0.000000e+00 944.0
58 TraesCS3D01G203700 chr7B 87.251 753 74 16 2654 3393 88142310 88143053 0.000000e+00 839.0
59 TraesCS3D01G203700 chr7B 86.462 650 53 15 4711 5350 416432429 416433053 0.000000e+00 680.0
60 TraesCS3D01G203700 chr7B 89.322 487 48 2 9050 9532 55467871 55467385 8.190000e-170 608.0
61 TraesCS3D01G203700 chr7B 85.913 504 59 9 4220 4717 416431865 416432362 2.360000e-145 527.0
62 TraesCS3D01G203700 chr7B 88.889 315 32 3 5132 5443 620571158 620571472 1.500000e-102 385.0
63 TraesCS3D01G203700 chr7B 87.594 266 29 3 5182 5443 64483114 64482849 1.200000e-78 305.0
64 TraesCS3D01G203700 chr7B 89.401 217 19 1 7930 8142 620583538 620583754 4.390000e-68 270.0
65 TraesCS3D01G203700 chr7B 91.275 149 10 3 6892 7038 620573265 620573412 5.840000e-47 200.0
66 TraesCS3D01G203700 chr7B 96.552 116 4 0 7081 7196 620573407 620573522 9.770000e-45 193.0
67 TraesCS3D01G203700 chr7B 92.982 57 4 0 2354 2410 347314892 347314836 6.130000e-12 84.2
68 TraesCS3D01G203700 chr7B 92.727 55 2 1 7017 7069 474468621 474468675 2.850000e-10 78.7
69 TraesCS3D01G203700 chr2B 84.177 1403 193 17 5444 6827 574151060 574152452 0.000000e+00 1334.0
70 TraesCS3D01G203700 chr2B 87.154 397 37 12 5051 5443 10666612 10666998 1.140000e-118 438.0
71 TraesCS3D01G203700 chr2B 86.902 397 38 12 5051 5443 390977023 390976637 5.290000e-117 433.0
72 TraesCS3D01G203700 chr2B 86.632 389 41 10 5061 5445 406246812 406246431 4.120000e-113 420.0
73 TraesCS3D01G203700 chr2B 86.179 246 18 5 4609 4852 406247134 406246903 1.590000e-62 252.0
74 TraesCS3D01G203700 chr2B 89.535 86 7 2 7316 7401 87845521 87845438 3.640000e-19 108.0
75 TraesCS3D01G203700 chr2B 94.231 52 1 1 7020 7069 729521254 729521203 2.850000e-10 78.7
76 TraesCS3D01G203700 chr2B 90.000 50 4 1 4058 4107 588691806 588691758 7.990000e-06 63.9
77 TraesCS3D01G203700 chr2D 85.497 1379 66 47 1 1354 572803944 572805213 0.000000e+00 1315.0
78 TraesCS3D01G203700 chr2D 82.097 1402 222 24 5448 6834 81841725 81840338 0.000000e+00 1171.0
79 TraesCS3D01G203700 chr2D 89.391 575 14 14 8134 8665 572805217 572805787 0.000000e+00 680.0
80 TraesCS3D01G203700 chr2D 93.863 277 14 3 1372 1646 408751488 408751213 1.920000e-111 414.0
81 TraesCS3D01G203700 chr2D 90.370 270 23 2 1628 1896 43532627 43532894 1.520000e-92 351.0
82 TraesCS3D01G203700 chr2D 72.912 982 229 30 5880 6835 343562541 343561571 1.200000e-78 305.0
83 TraesCS3D01G203700 chr2D 85.099 302 13 10 8755 9036 572805779 572806068 7.290000e-71 279.0
84 TraesCS3D01G203700 chr2D 98.684 76 1 0 8676 8751 456499212 456499287 1.670000e-27 135.0
85 TraesCS3D01G203700 chr2D 91.667 84 7 0 8675 8758 161366965 161367048 6.050000e-22 117.0
86 TraesCS3D01G203700 chr2D 93.421 76 4 1 7323 7398 39828106 39828180 2.810000e-20 111.0
87 TraesCS3D01G203700 chr2D 88.372 86 8 2 7316 7401 55371617 55371534 1.690000e-17 102.0
88 TraesCS3D01G203700 chr2D 84.211 95 15 0 2206 2300 453711422 453711516 1.020000e-14 93.5
89 TraesCS3D01G203700 chr2D 95.652 46 1 1 6786 6831 382336572 382336528 1.330000e-08 73.1
90 TraesCS3D01G203700 chr2A 83.682 1385 84 46 1 1354 712063953 712065226 0.000000e+00 1175.0
91 TraesCS3D01G203700 chr2A 86.303 752 82 14 2654 3393 67089126 67088384 0.000000e+00 798.0
92 TraesCS3D01G203700 chr2A 88.806 536 24 20 8135 8648 712065235 712065756 8.130000e-175 625.0
93 TraesCS3D01G203700 chr2A 92.466 292 8 4 8755 9036 712065757 712066044 1.150000e-108 405.0
94 TraesCS3D01G203700 chr2A 93.023 86 2 3 7316 7401 56920696 56920615 1.300000e-23 122.0
95 TraesCS3D01G203700 chr3A 93.968 630 23 9 735 1356 336612653 336612031 0.000000e+00 939.0
96 TraesCS3D01G203700 chr3A 86.614 762 59 17 2 740 336613768 336613027 0.000000e+00 802.0
97 TraesCS3D01G203700 chr3A 93.043 460 19 9 8217 8665 336611937 336611480 0.000000e+00 660.0
98 TraesCS3D01G203700 chr3A 84.942 518 63 8 4214 4717 724376000 724376516 2.370000e-140 510.0
99 TraesCS3D01G203700 chr3A 92.903 310 7 7 8755 9058 336611488 336611188 4.090000e-118 436.0
100 TraesCS3D01G203700 chr3A 88.934 244 26 1 1678 1920 688439322 688439079 5.600000e-77 300.0
101 TraesCS3D01G203700 chr3A 90.769 65 6 0 2346 2410 572463259 572463195 4.740000e-13 87.9
102 TraesCS3D01G203700 chr3A 92.727 55 2 1 7017 7069 329532964 329533018 2.850000e-10 78.7
103 TraesCS3D01G203700 chr3A 90.909 55 3 2 7017 7069 329626514 329626568 1.330000e-08 73.1
104 TraesCS3D01G203700 chr7A 86.067 811 60 27 4203 4984 673019869 673020655 0.000000e+00 822.0
105 TraesCS3D01G203700 chr5B 85.392 753 87 16 2654 3393 339983533 339984275 0.000000e+00 760.0
106 TraesCS3D01G203700 chr5B 90.515 485 42 2 9052 9532 568517982 568517498 1.040000e-178 638.0
107 TraesCS3D01G203700 chr5B 90.062 483 46 2 9052 9532 353023052 353022570 8.130000e-175 625.0
108 TraesCS3D01G203700 chr5B 89.256 484 47 3 9053 9532 495213885 495214367 1.370000e-167 601.0
109 TraesCS3D01G203700 chr5B 90.950 221 18 2 1620 1839 430285088 430284869 7.240000e-76 296.0
110 TraesCS3D01G203700 chr5B 89.686 223 21 2 7028 7249 523138205 523138426 5.640000e-72 283.0
111 TraesCS3D01G203700 chr5B 82.500 320 42 7 4859 5175 398844881 398844573 1.580000e-67 268.0
112 TraesCS3D01G203700 chr5B 75.641 546 77 29 7644 8143 184307123 184306588 4.480000e-53 220.0
113 TraesCS3D01G203700 chr5B 85.000 180 20 5 4998 5175 75001765 75001591 9.840000e-40 176.0
114 TraesCS3D01G203700 chr5B 94.118 34 2 0 4157 4190 355714126 355714093 1.700000e-02 52.8
115 TraesCS3D01G203700 chr6B 85.279 754 87 17 2654 3393 215746581 215745838 0.000000e+00 756.0
116 TraesCS3D01G203700 chr6B 89.322 487 42 7 9055 9532 25604129 25604614 3.810000e-168 603.0
117 TraesCS3D01G203700 chr6B 86.269 335 35 9 5021 5350 647456046 647456374 4.230000e-93 353.0
118 TraesCS3D01G203700 chr6B 85.000 180 20 5 4998 5175 560908383 560908557 9.840000e-40 176.0
119 TraesCS3D01G203700 chr1B 87.406 397 36 12 5051 5443 674655459 674655073 2.440000e-120 444.0
120 TraesCS3D01G203700 chr1B 85.441 261 35 3 1659 1917 570528434 570528693 1.580000e-67 268.0
121 TraesCS3D01G203700 chr1B 92.683 41 2 1 4058 4098 656239937 656239976 3.720000e-04 58.4
122 TraesCS3D01G203700 chr5A 86.650 397 37 10 5051 5443 109299070 109299454 8.850000e-115 425.0
123 TraesCS3D01G203700 chr5A 78.873 284 32 20 7881 8146 32526152 32526425 5.920000e-37 167.0
124 TraesCS3D01G203700 chr1A 78.521 568 30 31 506 1027 457343991 457344512 1.210000e-73 289.0
125 TraesCS3D01G203700 chr1A 81.250 128 6 7 425 551 457344639 457344529 4.740000e-13 87.9
126 TraesCS3D01G203700 chr6A 89.231 65 7 0 2346 2410 534782210 534782274 2.210000e-11 82.4
127 TraesCS3D01G203700 chr6A 92.683 41 2 1 4058 4098 594245668 594245707 3.720000e-04 58.4
128 TraesCS3D01G203700 chr1D 100.000 30 0 0 4069 4098 452572888 452572859 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G203700 chr3D 253555637 253565168 9531 True 17603.000000 17603 100.000000 1 9532 1 chr3D.!!$R3 9531
1 TraesCS3D01G203700 chr3D 12622021 12628785 6764 False 5768.500000 10604 97.299500 1349 8142 2 chr3D.!!$F4 6793
2 TraesCS3D01G203700 chr3D 593112096 593112602 506 False 529.000000 529 85.827000 4220 4717 1 chr3D.!!$F3 497
3 TraesCS3D01G203700 chr3D 609890480 609891185 705 True 371.500000 449 88.591500 4608 5443 2 chr3D.!!$R5 835
4 TraesCS3D01G203700 chr5D 482208881 482215617 6736 False 11450.000000 11450 97.259000 1364 8142 1 chr5D.!!$F2 6778
5 TraesCS3D01G203700 chr5D 162818654 162820038 1384 False 1297.000000 1297 83.679000 5445 6831 1 chr5D.!!$F1 1386
6 TraesCS3D01G203700 chr5D 561648717 561649923 1206 False 510.500000 610 83.063000 4203 5350 2 chr5D.!!$F3 1147
7 TraesCS3D01G203700 chr5D 494400081 494400659 578 True 395.000000 398 92.871500 1353 1646 2 chr5D.!!$R3 293
8 TraesCS3D01G203700 chr7D 199600363 199601750 1387 True 1369.000000 1369 84.632000 5448 6831 1 chr7D.!!$R2 1383
9 TraesCS3D01G203700 chr7D 559667219 559674290 7071 True 894.750000 2484 92.367750 1991 7712 4 chr7D.!!$R5 5721
10 TraesCS3D01G203700 chr4A 520180337 520184327 3990 False 1511.500000 2320 94.237250 1620 5445 4 chr4A.!!$F5 3825
11 TraesCS3D01G203700 chr4A 680350723 680351463 740 True 758.000000 758 85.372000 2654 3393 1 chr4A.!!$R2 739
12 TraesCS3D01G203700 chr4A 520188459 520191059 2600 False 434.666667 808 94.751000 7281 8142 3 chr4A.!!$F6 861
13 TraesCS3D01G203700 chr3B 309408475 309410687 2212 False 780.325000 1881 95.248500 1 9058 4 chr3B.!!$F3 9057
14 TraesCS3D01G203700 chr3B 295019099 295019729 630 False 691.000000 691 86.512000 4711 5350 1 chr3B.!!$F1 639
15 TraesCS3D01G203700 chr3B 795377917 795378422 505 False 518.000000 518 85.462000 4220 4717 1 chr3B.!!$F2 497
16 TraesCS3D01G203700 chr4B 389435968 389437344 1376 True 1696.000000 1696 88.881000 5440 6829 1 chr4B.!!$R2 1389
17 TraesCS3D01G203700 chr4D 47133713 47135099 1386 True 1592.000000 1592 87.455000 5444 6831 1 chr4D.!!$R1 1387
18 TraesCS3D01G203700 chr4D 191267653 191269673 2020 False 564.000000 699 88.104000 5051 7443 2 chr4D.!!$F2 2392
19 TraesCS3D01G203700 chr7B 747426991 747428379 1388 False 1411.000000 1411 85.111000 5444 6830 1 chr7B.!!$F4 1386
20 TraesCS3D01G203700 chr7B 88142310 88143053 743 False 839.000000 839 87.251000 2654 3393 1 chr7B.!!$F1 739
21 TraesCS3D01G203700 chr7B 64482849 64484050 1201 True 624.500000 944 86.490000 4205 5443 2 chr7B.!!$R3 1238
22 TraesCS3D01G203700 chr7B 416431865 416433053 1188 False 603.500000 680 86.187500 4220 5350 2 chr7B.!!$F5 1130
23 TraesCS3D01G203700 chr7B 620571158 620573522 2364 False 259.333333 385 92.238667 5132 7196 3 chr7B.!!$F6 2064
24 TraesCS3D01G203700 chr2B 574151060 574152452 1392 False 1334.000000 1334 84.177000 5444 6827 1 chr2B.!!$F2 1383
25 TraesCS3D01G203700 chr2B 406246431 406247134 703 True 336.000000 420 86.405500 4609 5445 2 chr2B.!!$R5 836
26 TraesCS3D01G203700 chr2D 81840338 81841725 1387 True 1171.000000 1171 82.097000 5448 6834 1 chr2D.!!$R2 1386
27 TraesCS3D01G203700 chr2D 572803944 572806068 2124 False 758.000000 1315 86.662333 1 9036 3 chr2D.!!$F6 9035
28 TraesCS3D01G203700 chr2D 343561571 343562541 970 True 305.000000 305 72.912000 5880 6835 1 chr2D.!!$R3 955
29 TraesCS3D01G203700 chr2A 67088384 67089126 742 True 798.000000 798 86.303000 2654 3393 1 chr2A.!!$R2 739
30 TraesCS3D01G203700 chr2A 712063953 712066044 2091 False 735.000000 1175 88.318000 1 9036 3 chr2A.!!$F1 9035
31 TraesCS3D01G203700 chr3A 336611188 336613768 2580 True 709.250000 939 91.632000 2 9058 4 chr3A.!!$R3 9056
32 TraesCS3D01G203700 chr3A 724376000 724376516 516 False 510.000000 510 84.942000 4214 4717 1 chr3A.!!$F3 503
33 TraesCS3D01G203700 chr7A 673019869 673020655 786 False 822.000000 822 86.067000 4203 4984 1 chr7A.!!$F1 781
34 TraesCS3D01G203700 chr5B 339983533 339984275 742 False 760.000000 760 85.392000 2654 3393 1 chr5B.!!$F1 739
35 TraesCS3D01G203700 chr5B 184306588 184307123 535 True 220.000000 220 75.641000 7644 8143 1 chr5B.!!$R2 499
36 TraesCS3D01G203700 chr6B 215745838 215746581 743 True 756.000000 756 85.279000 2654 3393 1 chr6B.!!$R1 739
37 TraesCS3D01G203700 chr1A 457343991 457344512 521 False 289.000000 289 78.521000 506 1027 1 chr1A.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 1298 0.037590 CCATCTCCAAACCAACCCGA 59.962 55.000 0.00 0.0 0.00 5.14 F
1451 1962 1.073177 CCGGTTTAGTTTCGCGTCAT 58.927 50.000 5.77 0.0 0.00 3.06 F
2155 2768 2.516225 GCGCCCCATCCACCTAAC 60.516 66.667 0.00 0.0 0.00 2.34 F
4129 4924 2.728846 GCCGAATCTTGTACACGTACGA 60.729 50.000 24.41 0.0 38.85 3.43 F
4137 4932 0.374758 GTACACGTACGAGATCGCCA 59.625 55.000 24.41 0.0 44.43 5.69 F
5612 7049 1.620819 CATCGCCCTACTATCCTGCTT 59.379 52.381 0.00 0.0 0.00 3.91 F
6991 9310 2.691409 ATGTAGTGCTTACGGTGCAT 57.309 45.000 0.00 0.0 42.69 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2763 0.039527 GCGTTGCCCTTTGTGTTAGG 60.040 55.000 0.00 0.0 0.00 2.69 R
2278 2892 2.128507 GGGAGGGCACGTAGAGGAG 61.129 68.421 0.00 0.0 0.00 3.69 R
4137 4932 1.455959 AGCGGCGTTCTAGGGATCT 60.456 57.895 9.37 0.0 0.00 2.75 R
5850 7338 1.383248 ATGGAGAAGAGGTCGGGGG 60.383 63.158 0.00 0.0 0.00 5.40 R
5901 7389 4.401519 CGAGACACCCTAAGTCAATAAGGA 59.598 45.833 0.00 0.0 38.46 3.36 R
7388 9716 5.650266 TCAAGGTTCAACAACACACTGTATT 59.350 36.000 0.00 0.0 33.70 1.89 R
8694 14901 0.091344 GTCTCGTCGTGCAAACATCG 59.909 55.000 0.00 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.551644 CAACTACGAAGGTTGGCCC 58.448 57.895 0.00 0.00 39.97 5.80
59 60 4.745125 CGGAGCGTGTGATATTTGTATTCT 59.255 41.667 0.00 0.00 0.00 2.40
97 98 2.354805 GGAATTGAGCCGTTCTACAGGT 60.355 50.000 0.00 0.00 0.00 4.00
104 105 1.819903 GCCGTTCTACAGGTCTTCTCT 59.180 52.381 0.00 0.00 0.00 3.10
111 112 3.752222 TCTACAGGTCTTCTCTGACGTTC 59.248 47.826 0.00 0.00 37.81 3.95
128 129 2.048222 CGCTTCTTCAGGGCGTCA 60.048 61.111 0.00 0.00 43.28 4.35
145 146 3.303725 GCGTCAATTTGCTACACAGAACA 60.304 43.478 0.00 0.00 0.00 3.18
174 175 3.190744 TCGACGTCTTCTGCTTTACATCT 59.809 43.478 14.70 0.00 0.00 2.90
175 176 3.301906 CGACGTCTTCTGCTTTACATCTG 59.698 47.826 14.70 0.00 0.00 2.90
186 187 3.759418 CTTTACATCTGCGACTTCTCGA 58.241 45.455 0.00 0.00 43.06 4.04
219 220 5.901552 TCACAAGCTCTTGGGTTTAAAAAG 58.098 37.500 11.21 0.00 44.05 2.27
229 230 5.757099 TGGGTTTAAAAAGGTTTGTTCCA 57.243 34.783 0.00 0.00 0.00 3.53
257 262 4.091549 ACGGAGATTTAGAGGTTACCACA 58.908 43.478 3.51 0.00 0.00 4.17
277 282 1.299089 GTTTTGCTCACGGTGCACC 60.299 57.895 26.78 26.78 40.40 5.01
278 283 1.453015 TTTTGCTCACGGTGCACCT 60.453 52.632 32.28 17.29 40.40 4.00
299 307 0.548031 GGGTGGATGCAGATGGAAGA 59.452 55.000 0.00 0.00 0.00 2.87
404 430 1.533731 TCCTTCGTCCATTTCGCAAAC 59.466 47.619 0.00 0.00 0.00 2.93
588 618 4.240096 CCCAGTTGCTGCAAGAAATAAAG 58.760 43.478 16.53 0.00 31.16 1.85
589 619 4.240096 CCAGTTGCTGCAAGAAATAAAGG 58.760 43.478 16.53 5.31 31.16 3.11
590 620 4.240096 CAGTTGCTGCAAGAAATAAAGGG 58.760 43.478 16.53 0.00 31.16 3.95
591 621 3.259123 AGTTGCTGCAAGAAATAAAGGGG 59.741 43.478 16.53 0.00 31.16 4.79
610 640 1.121378 GGGGTAGACAGTTAGGGAGC 58.879 60.000 0.00 0.00 0.00 4.70
611 641 0.745468 GGGTAGACAGTTAGGGAGCG 59.255 60.000 0.00 0.00 0.00 5.03
613 643 1.684248 GGTAGACAGTTAGGGAGCGGA 60.684 57.143 0.00 0.00 0.00 5.54
614 644 1.677052 GTAGACAGTTAGGGAGCGGAG 59.323 57.143 0.00 0.00 0.00 4.63
843 1297 0.965363 CCCATCTCCAAACCAACCCG 60.965 60.000 0.00 0.00 0.00 5.28
844 1298 0.037590 CCATCTCCAAACCAACCCGA 59.962 55.000 0.00 0.00 0.00 5.14
926 1392 2.937799 AGCTAGACTAGACACACGCTAC 59.062 50.000 13.91 0.00 0.00 3.58
1027 1523 2.194859 AGGTGATGATGAGCAGGAAGT 58.805 47.619 0.00 0.00 0.00 3.01
1345 1841 2.504244 GGTTCGTCGTCTGCCTCG 60.504 66.667 0.00 0.00 0.00 4.63
1346 1842 2.504244 GTTCGTCGTCTGCCTCGG 60.504 66.667 0.00 0.00 0.00 4.63
1347 1843 4.415332 TTCGTCGTCTGCCTCGGC 62.415 66.667 0.00 0.00 42.35 5.54
1349 1845 4.838486 CGTCGTCTGCCTCGGCTC 62.838 72.222 9.65 0.00 42.51 4.70
1350 1846 4.500116 GTCGTCTGCCTCGGCTCC 62.500 72.222 9.65 0.00 42.51 4.70
1351 1847 4.742649 TCGTCTGCCTCGGCTCCT 62.743 66.667 9.65 0.00 42.51 3.69
1368 1864 6.776116 TCGGCTCCTATCTCTACTTTTAATGA 59.224 38.462 0.00 0.00 0.00 2.57
1375 1871 9.039870 CCTATCTCTACTTTTAATGAAGCAGTG 57.960 37.037 0.00 0.00 0.00 3.66
1451 1962 1.073177 CCGGTTTAGTTTCGCGTCAT 58.927 50.000 5.77 0.00 0.00 3.06
1494 2005 6.884280 ATTTGAACGAATCAGAACTTTCCT 57.116 33.333 0.00 0.00 39.77 3.36
1651 2178 8.375506 ACTCTTAATGTCTGAGTTGGTGAATAA 58.624 33.333 0.00 0.00 37.76 1.40
1674 2201 2.768698 TCCACGGTTTATTTTCGCTGA 58.231 42.857 0.00 0.00 0.00 4.26
1883 2411 4.280929 GCTTCCAAACAAATCACCTACCTT 59.719 41.667 0.00 0.00 0.00 3.50
2153 2766 3.161450 GAGCGCCCCATCCACCTA 61.161 66.667 2.29 0.00 0.00 3.08
2154 2767 2.690881 AGCGCCCCATCCACCTAA 60.691 61.111 2.29 0.00 0.00 2.69
2155 2768 2.516225 GCGCCCCATCCACCTAAC 60.516 66.667 0.00 0.00 0.00 2.34
2915 3544 9.046296 CGCATAAGTTTTGTATCTCCTTTCTAT 57.954 33.333 0.00 0.00 0.00 1.98
3494 4280 9.959749 GAGAAATAGTCCAATGTTTTACACAAA 57.040 29.630 0.00 0.00 39.50 2.83
3603 4390 7.696755 TGACTCATGATGAAAAATATGTTCGG 58.303 34.615 0.00 0.00 0.00 4.30
3769 4556 8.463930 TCATCTTGAATGGAAGTAACTTTGTT 57.536 30.769 0.00 0.00 0.00 2.83
3884 4671 9.976776 CACTAATATCTCTACCCCTAATGTCTA 57.023 37.037 0.00 0.00 0.00 2.59
4129 4924 2.728846 GCCGAATCTTGTACACGTACGA 60.729 50.000 24.41 0.00 38.85 3.43
4137 4932 0.374758 GTACACGTACGAGATCGCCA 59.625 55.000 24.41 0.00 44.43 5.69
4218 5013 4.598894 CAGGCCGATCCCAGAGCG 62.599 72.222 0.00 0.00 41.31 5.03
4912 5847 8.845227 TCAGTTGTTGCAGTTTAAAATCATCTA 58.155 29.630 0.00 0.00 0.00 1.98
5513 6949 4.441415 CAGGCGACAACGATAGATAGAAAC 59.559 45.833 0.00 0.00 42.66 2.78
5612 7049 1.620819 CATCGCCCTACTATCCTGCTT 59.379 52.381 0.00 0.00 0.00 3.91
5920 7408 3.522343 GGGTCCTTATTGACTTAGGGTGT 59.478 47.826 0.00 0.00 35.54 4.16
6077 7565 3.544698 TCTCCACCAAGTTCCTCTACT 57.455 47.619 0.00 0.00 0.00 2.57
6284 7776 4.391216 CGAATCACATCTTCTTCACTTGCT 59.609 41.667 0.00 0.00 0.00 3.91
6700 8449 4.749598 GTGTTTATTTTGGGCTTGTTGAGG 59.250 41.667 0.00 0.00 0.00 3.86
6841 8611 5.968254 AGCCTTTTTCGGTTTAACTCAAAA 58.032 33.333 0.00 0.00 0.00 2.44
6861 8631 6.775142 TCAAAAGACTGACAATTAACCATGGA 59.225 34.615 21.47 0.00 0.00 3.41
6881 8651 5.076182 TGGAAAAGTAGTGCATCATGGAAA 58.924 37.500 0.00 0.00 0.00 3.13
6991 9310 2.691409 ATGTAGTGCTTACGGTGCAT 57.309 45.000 0.00 0.00 42.69 3.96
7388 9716 6.990349 AGAGTGTTACTCCATCTTTTCGAAAA 59.010 34.615 21.35 21.35 46.18 2.29
7863 13952 4.441079 CCATCCAAATGAAGCTAAAGGCAG 60.441 45.833 0.00 0.00 38.07 4.85
7994 14120 4.888326 TTTTCCAATTGTTGCAGGCTAT 57.112 36.364 4.43 0.00 0.00 2.97
8145 14273 3.550436 GCACGGGCATTCTACTAGTCTAC 60.550 52.174 3.77 0.00 40.72 2.59
8173 14305 2.700897 AGCTAATCGGTTATGCTCCACT 59.299 45.455 6.58 0.00 0.00 4.00
8174 14306 3.895656 AGCTAATCGGTTATGCTCCACTA 59.104 43.478 6.58 0.00 0.00 2.74
8175 14307 4.021894 AGCTAATCGGTTATGCTCCACTAG 60.022 45.833 6.58 0.00 0.00 2.57
8267 14433 1.594862 GCGATGCAGACTGGATTGTAC 59.405 52.381 21.44 6.17 32.79 2.90
8293 14459 2.335316 AAACTACGCCAACAGAACCA 57.665 45.000 0.00 0.00 0.00 3.67
8295 14461 2.335316 ACTACGCCAACAGAACCAAA 57.665 45.000 0.00 0.00 0.00 3.28
8377 14551 1.132262 CATCCCACGGCACATTTACAC 59.868 52.381 0.00 0.00 0.00 2.90
8378 14552 0.398696 TCCCACGGCACATTTACACT 59.601 50.000 0.00 0.00 0.00 3.55
8379 14553 1.202830 TCCCACGGCACATTTACACTT 60.203 47.619 0.00 0.00 0.00 3.16
8496 14692 6.589523 GTGCTGTATGTGATCTCATCTAATCC 59.410 42.308 13.32 1.17 0.00 3.01
8665 14872 3.780624 CCCGAGGGTTTAGTCATGG 57.219 57.895 0.00 0.00 0.00 3.66
8666 14873 1.200519 CCCGAGGGTTTAGTCATGGA 58.799 55.000 0.00 0.00 0.00 3.41
8667 14874 1.139058 CCCGAGGGTTTAGTCATGGAG 59.861 57.143 0.00 0.00 0.00 3.86
8668 14875 1.831736 CCGAGGGTTTAGTCATGGAGT 59.168 52.381 0.00 0.00 0.00 3.85
8669 14876 2.159085 CCGAGGGTTTAGTCATGGAGTC 60.159 54.545 0.00 0.00 0.00 3.36
8670 14877 2.159085 CGAGGGTTTAGTCATGGAGTCC 60.159 54.545 0.73 0.73 0.00 3.85
8671 14878 3.108376 GAGGGTTTAGTCATGGAGTCCT 58.892 50.000 11.33 0.00 0.00 3.85
8672 14879 2.840651 AGGGTTTAGTCATGGAGTCCTG 59.159 50.000 11.33 6.51 0.00 3.86
8673 14880 2.633488 GGTTTAGTCATGGAGTCCTGC 58.367 52.381 11.33 3.46 0.00 4.85
8674 14881 2.237392 GGTTTAGTCATGGAGTCCTGCT 59.763 50.000 11.33 9.80 0.00 4.24
8675 14882 3.451178 GGTTTAGTCATGGAGTCCTGCTA 59.549 47.826 11.33 8.97 0.00 3.49
8676 14883 4.434520 GTTTAGTCATGGAGTCCTGCTAC 58.565 47.826 11.33 3.74 0.00 3.58
8677 14884 2.238084 AGTCATGGAGTCCTGCTACA 57.762 50.000 11.33 0.00 43.31 2.74
8678 14885 1.827969 AGTCATGGAGTCCTGCTACAC 59.172 52.381 11.33 1.23 41.66 2.90
8679 14886 1.550524 GTCATGGAGTCCTGCTACACA 59.449 52.381 11.33 0.00 41.66 3.72
8680 14887 1.550524 TCATGGAGTCCTGCTACACAC 59.449 52.381 11.33 0.00 41.66 3.82
8681 14888 0.532573 ATGGAGTCCTGCTACACACG 59.467 55.000 11.33 0.00 41.66 4.49
8682 14889 0.538746 TGGAGTCCTGCTACACACGA 60.539 55.000 11.33 0.00 31.86 4.35
8683 14890 0.109226 GGAGTCCTGCTACACACGAC 60.109 60.000 0.41 0.00 35.31 4.34
8684 14891 0.596577 GAGTCCTGCTACACACGACA 59.403 55.000 0.00 0.00 36.93 4.35
8685 14892 1.000607 GAGTCCTGCTACACACGACAA 60.001 52.381 0.00 0.00 36.93 3.18
8686 14893 1.618837 AGTCCTGCTACACACGACAAT 59.381 47.619 0.00 0.00 36.93 2.71
8687 14894 2.037251 AGTCCTGCTACACACGACAATT 59.963 45.455 0.00 0.00 36.93 2.32
8688 14895 2.806244 GTCCTGCTACACACGACAATTT 59.194 45.455 0.00 0.00 35.22 1.82
8689 14896 3.991773 GTCCTGCTACACACGACAATTTA 59.008 43.478 0.00 0.00 35.22 1.40
8690 14897 4.630069 GTCCTGCTACACACGACAATTTAT 59.370 41.667 0.00 0.00 35.22 1.40
8691 14898 4.629634 TCCTGCTACACACGACAATTTATG 59.370 41.667 0.00 0.00 0.00 1.90
8692 14899 4.334443 CTGCTACACACGACAATTTATGC 58.666 43.478 0.00 0.00 0.00 3.14
8693 14900 3.748568 TGCTACACACGACAATTTATGCA 59.251 39.130 0.00 0.00 0.00 3.96
8694 14901 4.088648 GCTACACACGACAATTTATGCAC 58.911 43.478 0.00 0.00 0.00 4.57
8695 14902 3.181826 ACACACGACAATTTATGCACG 57.818 42.857 0.00 0.00 37.86 5.34
8696 14903 2.803386 ACACACGACAATTTATGCACGA 59.197 40.909 0.00 0.00 36.47 4.35
8697 14904 3.435327 ACACACGACAATTTATGCACGAT 59.565 39.130 0.00 0.00 36.47 3.73
8698 14905 3.780279 CACACGACAATTTATGCACGATG 59.220 43.478 0.00 0.00 36.47 3.84
8699 14906 3.435327 ACACGACAATTTATGCACGATGT 59.565 39.130 0.00 0.00 36.47 3.06
8700 14907 4.083537 ACACGACAATTTATGCACGATGTT 60.084 37.500 0.00 0.00 36.47 2.71
8701 14908 4.851014 CACGACAATTTATGCACGATGTTT 59.149 37.500 0.00 0.00 36.47 2.83
8702 14909 4.851014 ACGACAATTTATGCACGATGTTTG 59.149 37.500 0.00 0.00 36.47 2.93
8703 14910 4.258977 CGACAATTTATGCACGATGTTTGC 60.259 41.667 0.00 0.00 40.63 3.68
8707 14914 3.724494 TGCACGATGTTTGCACGA 58.276 50.000 0.24 0.00 45.06 4.35
8708 14915 1.278337 TGCACGATGTTTGCACGAC 59.722 52.632 0.24 0.00 45.06 4.34
8709 14916 1.788203 GCACGATGTTTGCACGACG 60.788 57.895 0.24 0.00 39.93 5.12
8710 14917 1.849973 CACGATGTTTGCACGACGA 59.150 52.632 0.00 0.00 0.00 4.20
8711 14918 0.179275 CACGATGTTTGCACGACGAG 60.179 55.000 0.00 0.00 0.00 4.18
8712 14919 0.318360 ACGATGTTTGCACGACGAGA 60.318 50.000 0.00 0.00 0.00 4.04
8713 14920 0.091344 CGATGTTTGCACGACGAGAC 59.909 55.000 0.00 0.00 0.00 3.36
8714 14921 1.136690 GATGTTTGCACGACGAGACA 58.863 50.000 0.00 0.00 0.00 3.41
8715 14922 1.525197 GATGTTTGCACGACGAGACAA 59.475 47.619 0.00 0.00 0.00 3.18
8716 14923 1.577468 TGTTTGCACGACGAGACAAT 58.423 45.000 0.00 0.00 0.00 2.71
8717 14924 1.525197 TGTTTGCACGACGAGACAATC 59.475 47.619 0.00 3.02 0.00 2.67
8718 14925 1.525197 GTTTGCACGACGAGACAATCA 59.475 47.619 0.00 0.00 0.00 2.57
8719 14926 1.859383 TTGCACGACGAGACAATCAA 58.141 45.000 0.00 0.00 0.00 2.57
8720 14927 1.418373 TGCACGACGAGACAATCAAG 58.582 50.000 0.00 0.00 0.00 3.02
8721 14928 0.093705 GCACGACGAGACAATCAAGC 59.906 55.000 0.00 0.00 0.00 4.01
8722 14929 0.716108 CACGACGAGACAATCAAGCC 59.284 55.000 0.00 0.00 0.00 4.35
8723 14930 0.732880 ACGACGAGACAATCAAGCCG 60.733 55.000 0.00 0.00 0.00 5.52
8724 14931 0.732880 CGACGAGACAATCAAGCCGT 60.733 55.000 0.00 0.00 0.00 5.68
8725 14932 0.992802 GACGAGACAATCAAGCCGTC 59.007 55.000 0.00 0.00 39.32 4.79
8726 14933 0.389948 ACGAGACAATCAAGCCGTCC 60.390 55.000 0.00 0.00 0.00 4.79
8727 14934 0.389817 CGAGACAATCAAGCCGTCCA 60.390 55.000 0.00 0.00 0.00 4.02
8728 14935 1.740380 CGAGACAATCAAGCCGTCCAT 60.740 52.381 0.00 0.00 0.00 3.41
8729 14936 1.667724 GAGACAATCAAGCCGTCCATG 59.332 52.381 0.00 0.00 0.00 3.66
8730 14937 0.099436 GACAATCAAGCCGTCCATGC 59.901 55.000 0.00 0.00 0.00 4.06
8731 14938 0.608856 ACAATCAAGCCGTCCATGCA 60.609 50.000 0.00 0.00 0.00 3.96
8732 14939 0.742505 CAATCAAGCCGTCCATGCAT 59.257 50.000 0.00 0.00 0.00 3.96
8733 14940 0.742505 AATCAAGCCGTCCATGCATG 59.257 50.000 20.19 20.19 0.00 4.06
8734 14941 1.731433 ATCAAGCCGTCCATGCATGC 61.731 55.000 21.69 11.82 0.00 4.06
8735 14942 2.361483 AAGCCGTCCATGCATGCA 60.361 55.556 25.04 25.04 0.00 3.96
8736 14943 2.412323 AAGCCGTCCATGCATGCAG 61.412 57.895 26.69 16.97 0.00 4.41
8737 14944 4.564116 GCCGTCCATGCATGCAGC 62.564 66.667 26.69 18.35 45.96 5.25
8821 15032 1.561542 AGGGAGATAAGTGGGCACAAG 59.438 52.381 0.00 0.00 0.00 3.16
8829 15044 2.663520 TGGGCACAAGCGTGTACG 60.664 61.111 4.57 0.00 45.50 3.67
9016 15244 5.678871 GCAGTTCCATTCGCCGATATCTATA 60.679 44.000 0.34 0.00 0.00 1.31
9055 15283 1.456296 TGTGCCTGCTCATTGCTTAG 58.544 50.000 0.00 0.00 43.37 2.18
9059 15287 0.394762 CCTGCTCATTGCTTAGGCCA 60.395 55.000 5.01 0.00 43.37 5.36
9060 15288 1.466856 CTGCTCATTGCTTAGGCCAA 58.533 50.000 5.01 0.00 43.37 4.52
9061 15289 1.133790 CTGCTCATTGCTTAGGCCAAC 59.866 52.381 5.01 0.00 43.37 3.77
9062 15290 1.176527 GCTCATTGCTTAGGCCAACA 58.823 50.000 5.01 0.00 38.95 3.33
9063 15291 1.135286 GCTCATTGCTTAGGCCAACAC 60.135 52.381 5.01 0.00 38.95 3.32
9064 15292 2.440409 CTCATTGCTTAGGCCAACACT 58.560 47.619 5.01 0.00 37.74 3.55
9065 15293 3.609853 CTCATTGCTTAGGCCAACACTA 58.390 45.455 5.01 0.00 37.74 2.74
9066 15294 3.343617 TCATTGCTTAGGCCAACACTAC 58.656 45.455 5.01 0.00 37.74 2.73
9067 15295 2.194201 TTGCTTAGGCCAACACTACC 57.806 50.000 5.01 0.00 37.74 3.18
9068 15296 0.036765 TGCTTAGGCCAACACTACCG 60.037 55.000 5.01 0.00 37.74 4.02
9069 15297 1.366854 GCTTAGGCCAACACTACCGC 61.367 60.000 5.01 0.00 0.00 5.68
9070 15298 1.079681 TTAGGCCAACACTACCGCG 60.080 57.895 5.01 0.00 0.00 6.46
9071 15299 3.652539 TAGGCCAACACTACCGCGC 62.653 63.158 5.01 0.00 0.00 6.86
9074 15302 3.475774 CCAACACTACCGCGCGAC 61.476 66.667 34.63 0.00 0.00 5.19
9075 15303 3.475774 CAACACTACCGCGCGACC 61.476 66.667 34.63 0.00 0.00 4.79
9076 15304 4.729856 AACACTACCGCGCGACCC 62.730 66.667 34.63 0.00 0.00 4.46
9080 15308 4.524318 CTACCGCGCGACCCCATT 62.524 66.667 34.63 8.35 0.00 3.16
9081 15309 4.085204 TACCGCGCGACCCCATTT 62.085 61.111 34.63 6.86 0.00 2.32
9082 15310 3.608993 TACCGCGCGACCCCATTTT 62.609 57.895 34.63 5.76 0.00 1.82
9083 15311 2.236223 TACCGCGCGACCCCATTTTA 62.236 55.000 34.63 4.75 0.00 1.52
9084 15312 2.184167 CCGCGCGACCCCATTTTAT 61.184 57.895 34.63 0.00 0.00 1.40
9085 15313 1.278637 CGCGCGACCCCATTTTATC 59.721 57.895 28.94 0.00 0.00 1.75
9086 15314 1.157870 CGCGCGACCCCATTTTATCT 61.158 55.000 28.94 0.00 0.00 1.98
9087 15315 0.307760 GCGCGACCCCATTTTATCTG 59.692 55.000 12.10 0.00 0.00 2.90
9088 15316 0.944386 CGCGACCCCATTTTATCTGG 59.056 55.000 0.00 0.00 0.00 3.86
9089 15317 0.668535 GCGACCCCATTTTATCTGGC 59.331 55.000 0.00 0.00 32.08 4.85
9090 15318 1.318576 CGACCCCATTTTATCTGGCC 58.681 55.000 0.00 0.00 32.08 5.36
9091 15319 1.704641 GACCCCATTTTATCTGGCCC 58.295 55.000 0.00 0.00 32.08 5.80
9092 15320 0.264657 ACCCCATTTTATCTGGCCCC 59.735 55.000 0.00 0.00 32.08 5.80
9093 15321 0.264359 CCCCATTTTATCTGGCCCCA 59.736 55.000 0.00 0.00 32.08 4.96
9094 15322 1.132753 CCCCATTTTATCTGGCCCCAT 60.133 52.381 0.00 0.00 32.08 4.00
9095 15323 2.250924 CCCATTTTATCTGGCCCCATC 58.749 52.381 0.00 0.00 32.08 3.51
9096 15324 2.250924 CCATTTTATCTGGCCCCATCC 58.749 52.381 0.00 0.00 0.00 3.51
9097 15325 1.888512 CATTTTATCTGGCCCCATCCG 59.111 52.381 0.00 0.00 0.00 4.18
9098 15326 0.923358 TTTTATCTGGCCCCATCCGT 59.077 50.000 0.00 0.00 0.00 4.69
9099 15327 0.923358 TTTATCTGGCCCCATCCGTT 59.077 50.000 0.00 0.00 0.00 4.44
9100 15328 0.923358 TTATCTGGCCCCATCCGTTT 59.077 50.000 0.00 0.00 0.00 3.60
9101 15329 0.182537 TATCTGGCCCCATCCGTTTG 59.817 55.000 0.00 0.00 0.00 2.93
9102 15330 2.572333 ATCTGGCCCCATCCGTTTGG 62.572 60.000 0.00 0.00 36.46 3.28
9111 15339 3.586100 CCATCCGTTTGGGGTAAAAAG 57.414 47.619 0.00 0.00 36.01 2.27
9112 15340 3.158676 CCATCCGTTTGGGGTAAAAAGA 58.841 45.455 0.00 0.00 36.01 2.52
9113 15341 3.574826 CCATCCGTTTGGGGTAAAAAGAA 59.425 43.478 0.00 0.00 36.01 2.52
9114 15342 4.221924 CCATCCGTTTGGGGTAAAAAGAAT 59.778 41.667 0.00 0.00 36.01 2.40
9115 15343 5.419471 CCATCCGTTTGGGGTAAAAAGAATA 59.581 40.000 0.00 0.00 36.01 1.75
9116 15344 6.071278 CCATCCGTTTGGGGTAAAAAGAATAA 60.071 38.462 0.00 0.00 36.01 1.40
9117 15345 6.973460 TCCGTTTGGGGTAAAAAGAATAAA 57.027 33.333 0.00 0.00 36.01 1.40
9118 15346 7.541916 TCCGTTTGGGGTAAAAAGAATAAAT 57.458 32.000 0.00 0.00 36.01 1.40
9119 15347 7.604549 TCCGTTTGGGGTAAAAAGAATAAATC 58.395 34.615 0.00 0.00 36.01 2.17
9120 15348 6.528774 CCGTTTGGGGTAAAAAGAATAAATCG 59.471 38.462 0.00 0.00 0.00 3.34
9121 15349 6.528774 CGTTTGGGGTAAAAAGAATAAATCGG 59.471 38.462 0.00 0.00 0.00 4.18
9122 15350 6.532988 TTGGGGTAAAAAGAATAAATCGGG 57.467 37.500 0.00 0.00 0.00 5.14
9123 15351 4.403113 TGGGGTAAAAAGAATAAATCGGGC 59.597 41.667 0.00 0.00 0.00 6.13
9124 15352 4.498513 GGGGTAAAAAGAATAAATCGGGCG 60.499 45.833 0.00 0.00 0.00 6.13
9125 15353 4.498513 GGGTAAAAAGAATAAATCGGGCGG 60.499 45.833 0.00 0.00 0.00 6.13
9126 15354 2.863401 AAAAGAATAAATCGGGCGGC 57.137 45.000 0.00 0.00 0.00 6.53
9127 15355 2.052782 AAAGAATAAATCGGGCGGCT 57.947 45.000 9.56 0.00 0.00 5.52
9128 15356 1.594331 AAGAATAAATCGGGCGGCTC 58.406 50.000 9.56 0.00 0.00 4.70
9129 15357 0.468226 AGAATAAATCGGGCGGCTCA 59.532 50.000 9.56 0.00 0.00 4.26
9130 15358 0.868406 GAATAAATCGGGCGGCTCAG 59.132 55.000 9.56 0.70 0.00 3.35
9131 15359 1.166531 AATAAATCGGGCGGCTCAGC 61.167 55.000 9.56 0.00 0.00 4.26
9152 15380 4.570663 CGACGGCTCGGACCCATC 62.571 72.222 0.00 0.00 36.16 3.51
9153 15381 3.148279 GACGGCTCGGACCCATCT 61.148 66.667 0.00 0.00 0.00 2.90
9154 15382 2.683933 ACGGCTCGGACCCATCTT 60.684 61.111 0.00 0.00 0.00 2.40
9155 15383 2.202932 CGGCTCGGACCCATCTTG 60.203 66.667 0.00 0.00 0.00 3.02
9156 15384 2.990479 GGCTCGGACCCATCTTGT 59.010 61.111 0.00 0.00 0.00 3.16
9157 15385 1.153349 GGCTCGGACCCATCTTGTC 60.153 63.158 0.00 0.00 0.00 3.18
9162 15390 3.644861 GGACCCATCTTGTCCGTTT 57.355 52.632 0.00 0.00 42.63 3.60
9163 15391 1.905637 GGACCCATCTTGTCCGTTTT 58.094 50.000 0.00 0.00 42.63 2.43
9164 15392 1.539827 GGACCCATCTTGTCCGTTTTG 59.460 52.381 0.00 0.00 42.63 2.44
9165 15393 2.227194 GACCCATCTTGTCCGTTTTGT 58.773 47.619 0.00 0.00 0.00 2.83
9166 15394 1.953686 ACCCATCTTGTCCGTTTTGTG 59.046 47.619 0.00 0.00 0.00 3.33
9167 15395 1.953686 CCCATCTTGTCCGTTTTGTGT 59.046 47.619 0.00 0.00 0.00 3.72
9168 15396 2.031157 CCCATCTTGTCCGTTTTGTGTC 60.031 50.000 0.00 0.00 0.00 3.67
9169 15397 2.031157 CCATCTTGTCCGTTTTGTGTCC 60.031 50.000 0.00 0.00 0.00 4.02
9170 15398 1.292061 TCTTGTCCGTTTTGTGTCCG 58.708 50.000 0.00 0.00 0.00 4.79
9171 15399 0.306533 CTTGTCCGTTTTGTGTCCGG 59.693 55.000 0.00 0.00 43.03 5.14
9172 15400 1.096386 TTGTCCGTTTTGTGTCCGGG 61.096 55.000 0.00 0.00 41.98 5.73
9173 15401 2.592287 TCCGTTTTGTGTCCGGGC 60.592 61.111 0.00 0.00 41.98 6.13
9174 15402 3.666253 CCGTTTTGTGTCCGGGCC 61.666 66.667 2.12 0.00 38.09 5.80
9175 15403 4.020378 CGTTTTGTGTCCGGGCCG 62.020 66.667 21.46 21.46 0.00 6.13
9176 15404 2.592287 GTTTTGTGTCCGGGCCGA 60.592 61.111 30.79 11.12 0.00 5.54
9177 15405 2.592287 TTTTGTGTCCGGGCCGAC 60.592 61.111 30.79 22.88 0.00 4.79
9178 15406 4.629523 TTTGTGTCCGGGCCGACC 62.630 66.667 30.79 17.72 31.35 4.79
9188 15416 3.202706 GGCCGACCCATTTCGAGC 61.203 66.667 0.00 0.00 41.78 5.03
9189 15417 3.564027 GCCGACCCATTTCGAGCG 61.564 66.667 0.00 0.00 41.78 5.03
9190 15418 3.564027 CCGACCCATTTCGAGCGC 61.564 66.667 0.00 0.00 41.78 5.92
9191 15419 2.813474 CGACCCATTTCGAGCGCA 60.813 61.111 11.47 0.00 41.78 6.09
9192 15420 2.387445 CGACCCATTTCGAGCGCAA 61.387 57.895 11.47 0.00 41.78 4.85
9193 15421 1.873165 GACCCATTTCGAGCGCAAA 59.127 52.632 11.47 1.09 0.00 3.68
9194 15422 0.454452 GACCCATTTCGAGCGCAAAC 60.454 55.000 11.47 0.00 0.00 2.93
9195 15423 0.889186 ACCCATTTCGAGCGCAAACT 60.889 50.000 11.47 0.00 0.00 2.66
9196 15424 0.240945 CCCATTTCGAGCGCAAACTT 59.759 50.000 11.47 0.00 0.00 2.66
9197 15425 1.330306 CCATTTCGAGCGCAAACTTG 58.670 50.000 11.47 0.00 0.00 3.16
9198 15426 1.334960 CCATTTCGAGCGCAAACTTGT 60.335 47.619 11.47 0.00 0.00 3.16
9199 15427 1.710249 CATTTCGAGCGCAAACTTGTG 59.290 47.619 11.47 0.00 41.43 3.33
9205 15433 3.119193 CGCAAACTTGTGCCTGGT 58.881 55.556 0.00 0.00 41.73 4.00
9206 15434 1.437160 CGCAAACTTGTGCCTGGTT 59.563 52.632 0.00 0.00 41.73 3.67
9207 15435 0.179113 CGCAAACTTGTGCCTGGTTT 60.179 50.000 0.00 0.00 41.73 3.27
9208 15436 1.289276 GCAAACTTGTGCCTGGTTTG 58.711 50.000 11.78 11.78 46.97 2.93
9209 15437 1.938625 CAAACTTGTGCCTGGTTTGG 58.061 50.000 9.15 0.00 43.19 3.28
9210 15438 0.829990 AAACTTGTGCCTGGTTTGGG 59.170 50.000 0.00 0.00 32.84 4.12
9211 15439 0.325203 AACTTGTGCCTGGTTTGGGT 60.325 50.000 0.00 0.00 0.00 4.51
9212 15440 0.755327 ACTTGTGCCTGGTTTGGGTC 60.755 55.000 0.00 0.00 0.00 4.46
9213 15441 1.795170 CTTGTGCCTGGTTTGGGTCG 61.795 60.000 0.00 0.00 0.00 4.79
9214 15442 3.670377 GTGCCTGGTTTGGGTCGC 61.670 66.667 0.00 0.00 0.00 5.19
9217 15445 3.047877 CCTGGTTTGGGTCGCGAC 61.048 66.667 30.67 30.67 0.00 5.19
9218 15446 3.411351 CTGGTTTGGGTCGCGACG 61.411 66.667 30.99 12.33 0.00 5.12
9219 15447 4.973055 TGGTTTGGGTCGCGACGG 62.973 66.667 30.99 0.00 0.00 4.79
9220 15448 4.668118 GGTTTGGGTCGCGACGGA 62.668 66.667 30.99 18.10 0.00 4.69
9221 15449 3.408851 GTTTGGGTCGCGACGGAC 61.409 66.667 30.99 23.28 36.18 4.79
9264 15492 4.814294 GTCAGGGCCGCGTGGTAG 62.814 72.222 17.91 4.39 37.67 3.18
9266 15494 4.814294 CAGGGCCGCGTGGTAGAC 62.814 72.222 17.91 4.78 37.67 2.59
9277 15505 2.816746 TGGTAGACGGCCACCTATC 58.183 57.895 7.58 7.92 35.73 2.08
9278 15506 0.260816 TGGTAGACGGCCACCTATCT 59.739 55.000 7.58 4.00 35.73 1.98
9279 15507 1.342674 TGGTAGACGGCCACCTATCTT 60.343 52.381 7.58 0.00 35.73 2.40
9280 15508 1.340568 GGTAGACGGCCACCTATCTTC 59.659 57.143 2.24 0.00 0.00 2.87
9281 15509 1.340568 GTAGACGGCCACCTATCTTCC 59.659 57.143 2.24 0.00 0.00 3.46
9282 15510 0.325296 AGACGGCCACCTATCTTCCA 60.325 55.000 2.24 0.00 0.00 3.53
9283 15511 0.759346 GACGGCCACCTATCTTCCAT 59.241 55.000 2.24 0.00 0.00 3.41
9284 15512 0.759346 ACGGCCACCTATCTTCCATC 59.241 55.000 2.24 0.00 0.00 3.51
9285 15513 1.051812 CGGCCACCTATCTTCCATCT 58.948 55.000 2.24 0.00 0.00 2.90
9286 15514 1.270518 CGGCCACCTATCTTCCATCTG 60.271 57.143 2.24 0.00 0.00 2.90
9287 15515 1.544314 GGCCACCTATCTTCCATCTGC 60.544 57.143 0.00 0.00 0.00 4.26
9288 15516 1.544314 GCCACCTATCTTCCATCTGCC 60.544 57.143 0.00 0.00 0.00 4.85
9289 15517 1.770658 CCACCTATCTTCCATCTGCCA 59.229 52.381 0.00 0.00 0.00 4.92
9290 15518 2.173356 CCACCTATCTTCCATCTGCCAA 59.827 50.000 0.00 0.00 0.00 4.52
9291 15519 3.209410 CACCTATCTTCCATCTGCCAAC 58.791 50.000 0.00 0.00 0.00 3.77
9292 15520 2.846206 ACCTATCTTCCATCTGCCAACA 59.154 45.455 0.00 0.00 0.00 3.33
9293 15521 3.461085 ACCTATCTTCCATCTGCCAACAT 59.539 43.478 0.00 0.00 0.00 2.71
9294 15522 4.070716 CCTATCTTCCATCTGCCAACATC 58.929 47.826 0.00 0.00 0.00 3.06
9295 15523 3.657398 ATCTTCCATCTGCCAACATCA 57.343 42.857 0.00 0.00 0.00 3.07
9296 15524 3.438216 TCTTCCATCTGCCAACATCAA 57.562 42.857 0.00 0.00 0.00 2.57
9297 15525 3.972133 TCTTCCATCTGCCAACATCAAT 58.028 40.909 0.00 0.00 0.00 2.57
9298 15526 3.697542 TCTTCCATCTGCCAACATCAATG 59.302 43.478 0.00 0.00 0.00 2.82
9299 15527 1.752498 TCCATCTGCCAACATCAATGC 59.248 47.619 0.00 0.00 0.00 3.56
9300 15528 1.535226 CCATCTGCCAACATCAATGCG 60.535 52.381 0.00 0.00 0.00 4.73
9301 15529 0.101759 ATCTGCCAACATCAATGCGC 59.898 50.000 0.00 0.00 0.00 6.09
9302 15530 1.213275 CTGCCAACATCAATGCGCA 59.787 52.632 14.96 14.96 0.00 6.09
9303 15531 0.179121 CTGCCAACATCAATGCGCAT 60.179 50.000 19.28 19.28 30.58 4.73
9304 15532 0.458716 TGCCAACATCAATGCGCATG 60.459 50.000 26.09 15.88 0.00 4.06
9305 15533 1.149361 GCCAACATCAATGCGCATGG 61.149 55.000 26.09 22.52 0.00 3.66
9306 15534 0.528901 CCAACATCAATGCGCATGGG 60.529 55.000 26.09 19.29 0.00 4.00
9307 15535 1.142314 AACATCAATGCGCATGGGC 59.858 52.632 26.09 26.55 0.00 5.36
9327 15555 2.044946 GTGGCCCACCTGTCATCC 60.045 66.667 1.17 0.00 36.63 3.51
9328 15556 3.716195 TGGCCCACCTGTCATCCG 61.716 66.667 0.00 0.00 36.63 4.18
9329 15557 4.489771 GGCCCACCTGTCATCCGG 62.490 72.222 0.00 0.00 0.00 5.14
9330 15558 3.717294 GCCCACCTGTCATCCGGT 61.717 66.667 0.00 0.00 0.00 5.28
9331 15559 2.584608 CCCACCTGTCATCCGGTC 59.415 66.667 0.00 0.00 0.00 4.79
9332 15560 2.290287 CCCACCTGTCATCCGGTCA 61.290 63.158 0.00 0.00 0.00 4.02
9333 15561 1.626356 CCCACCTGTCATCCGGTCAT 61.626 60.000 0.00 0.00 0.00 3.06
9334 15562 0.179073 CCACCTGTCATCCGGTCATC 60.179 60.000 0.00 0.00 0.00 2.92
9335 15563 0.528466 CACCTGTCATCCGGTCATCG 60.528 60.000 0.00 0.00 38.88 3.84
9336 15564 0.683179 ACCTGTCATCCGGTCATCGA 60.683 55.000 0.00 0.00 42.43 3.59
9337 15565 0.459899 CCTGTCATCCGGTCATCGAA 59.540 55.000 0.00 0.00 42.43 3.71
9338 15566 1.560923 CTGTCATCCGGTCATCGAAC 58.439 55.000 0.00 0.00 42.43 3.95
9339 15567 0.179148 TGTCATCCGGTCATCGAACG 60.179 55.000 0.00 0.00 42.95 3.95
9355 15583 2.879907 CGGTCGCCGTCCTTCTTA 59.120 61.111 9.69 0.00 42.73 2.10
9356 15584 1.213537 CGGTCGCCGTCCTTCTTAA 59.786 57.895 9.69 0.00 42.73 1.85
9357 15585 0.388907 CGGTCGCCGTCCTTCTTAAA 60.389 55.000 9.69 0.00 42.73 1.52
9358 15586 1.738030 CGGTCGCCGTCCTTCTTAAAT 60.738 52.381 9.69 0.00 42.73 1.40
9359 15587 1.664151 GGTCGCCGTCCTTCTTAAATG 59.336 52.381 0.00 0.00 0.00 2.32
9360 15588 1.664151 GTCGCCGTCCTTCTTAAATGG 59.336 52.381 0.00 0.00 0.00 3.16
9361 15589 1.014352 CGCCGTCCTTCTTAAATGGG 58.986 55.000 0.00 0.00 0.00 4.00
9362 15590 1.406341 CGCCGTCCTTCTTAAATGGGA 60.406 52.381 0.00 0.00 0.00 4.37
9363 15591 2.014857 GCCGTCCTTCTTAAATGGGAC 58.985 52.381 0.00 0.00 43.22 4.46
9364 15592 2.640184 CCGTCCTTCTTAAATGGGACC 58.360 52.381 12.05 0.00 43.61 4.46
9365 15593 2.640184 CGTCCTTCTTAAATGGGACCC 58.360 52.381 2.45 2.45 43.61 4.46
9366 15594 2.640184 GTCCTTCTTAAATGGGACCCG 58.360 52.381 5.91 0.00 41.48 5.28
9367 15595 2.026542 GTCCTTCTTAAATGGGACCCGT 60.027 50.000 5.91 1.59 41.48 5.28
9368 15596 2.026636 TCCTTCTTAAATGGGACCCGTG 60.027 50.000 5.84 0.00 0.00 4.94
9369 15597 2.026636 CCTTCTTAAATGGGACCCGTGA 60.027 50.000 5.84 0.00 0.00 4.35
9370 15598 3.560453 CCTTCTTAAATGGGACCCGTGAA 60.560 47.826 5.84 4.57 0.00 3.18
9371 15599 3.062122 TCTTAAATGGGACCCGTGAAC 57.938 47.619 5.84 0.00 0.00 3.18
9372 15600 2.089201 CTTAAATGGGACCCGTGAACC 58.911 52.381 5.84 0.00 0.00 3.62
9373 15601 0.036199 TAAATGGGACCCGTGAACCG 60.036 55.000 5.84 0.00 0.00 4.44
9382 15610 2.798262 CGTGAACCGGTCGTCGTC 60.798 66.667 8.04 0.82 37.11 4.20
9383 15611 2.429739 GTGAACCGGTCGTCGTCC 60.430 66.667 8.04 0.00 37.11 4.79
9384 15612 2.595463 TGAACCGGTCGTCGTCCT 60.595 61.111 8.04 0.00 37.11 3.85
9385 15613 2.177778 GAACCGGTCGTCGTCCTC 59.822 66.667 8.04 0.00 37.11 3.71
9386 15614 3.657835 GAACCGGTCGTCGTCCTCG 62.658 68.421 8.04 0.00 37.11 4.63
9389 15617 4.099170 CGGTCGTCGTCCTCGCTT 62.099 66.667 6.94 0.00 36.96 4.68
9390 15618 2.202453 GGTCGTCGTCCTCGCTTC 60.202 66.667 0.91 0.00 36.96 3.86
9391 15619 2.202453 GTCGTCGTCCTCGCTTCC 60.202 66.667 0.00 0.00 36.96 3.46
9392 15620 3.437795 TCGTCGTCCTCGCTTCCC 61.438 66.667 0.00 0.00 36.96 3.97
9393 15621 3.744719 CGTCGTCCTCGCTTCCCA 61.745 66.667 0.00 0.00 36.96 4.37
9394 15622 2.126031 GTCGTCCTCGCTTCCCAC 60.126 66.667 0.00 0.00 36.96 4.61
9395 15623 2.282958 TCGTCCTCGCTTCCCACT 60.283 61.111 0.00 0.00 36.96 4.00
9396 15624 2.182030 CGTCCTCGCTTCCCACTC 59.818 66.667 0.00 0.00 0.00 3.51
9397 15625 2.579738 GTCCTCGCTTCCCACTCC 59.420 66.667 0.00 0.00 0.00 3.85
9398 15626 3.068691 TCCTCGCTTCCCACTCCG 61.069 66.667 0.00 0.00 0.00 4.63
9399 15627 4.148825 CCTCGCTTCCCACTCCGG 62.149 72.222 0.00 0.00 0.00 5.14
9400 15628 4.821589 CTCGCTTCCCACTCCGGC 62.822 72.222 0.00 0.00 0.00 6.13
9408 15636 4.787280 CCACTCCGGCCCCTCTCT 62.787 72.222 0.00 0.00 0.00 3.10
9409 15637 3.465403 CACTCCGGCCCCTCTCTG 61.465 72.222 0.00 0.00 0.00 3.35
9418 15646 4.465446 CCCTCTCTGCCCCCTCGA 62.465 72.222 0.00 0.00 0.00 4.04
9419 15647 2.364317 CCTCTCTGCCCCCTCGAA 60.364 66.667 0.00 0.00 0.00 3.71
9420 15648 1.990060 CCTCTCTGCCCCCTCGAAA 60.990 63.158 0.00 0.00 0.00 3.46
9421 15649 1.519719 CTCTCTGCCCCCTCGAAAG 59.480 63.158 0.00 0.00 0.00 2.62
9422 15650 2.124942 CTCTGCCCCCTCGAAAGC 60.125 66.667 0.00 0.00 0.00 3.51
9423 15651 3.689002 CTCTGCCCCCTCGAAAGCC 62.689 68.421 0.00 0.00 0.00 4.35
9427 15655 3.702048 CCCCCTCGAAAGCCGACA 61.702 66.667 0.00 0.00 43.23 4.35
9428 15656 2.434359 CCCCTCGAAAGCCGACAC 60.434 66.667 0.00 0.00 43.23 3.67
9429 15657 2.809601 CCCTCGAAAGCCGACACG 60.810 66.667 0.00 0.00 43.23 4.49
9430 15658 3.479269 CCTCGAAAGCCGACACGC 61.479 66.667 0.00 0.00 43.23 5.34
9431 15659 3.479269 CTCGAAAGCCGACACGCC 61.479 66.667 0.00 0.00 43.23 5.68
9434 15662 2.975799 GAAAGCCGACACGCCCAA 60.976 61.111 0.00 0.00 0.00 4.12
9435 15663 2.517402 AAAGCCGACACGCCCAAA 60.517 55.556 0.00 0.00 0.00 3.28
9436 15664 2.726850 GAAAGCCGACACGCCCAAAC 62.727 60.000 0.00 0.00 0.00 2.93
9439 15667 4.636435 CCGACACGCCCAAACCCT 62.636 66.667 0.00 0.00 0.00 4.34
9440 15668 2.344500 CGACACGCCCAAACCCTA 59.656 61.111 0.00 0.00 0.00 3.53
9441 15669 1.740296 CGACACGCCCAAACCCTAG 60.740 63.158 0.00 0.00 0.00 3.02
9442 15670 2.033602 ACACGCCCAAACCCTAGC 59.966 61.111 0.00 0.00 0.00 3.42
9443 15671 2.750237 CACGCCCAAACCCTAGCC 60.750 66.667 0.00 0.00 0.00 3.93
9444 15672 3.253838 ACGCCCAAACCCTAGCCA 61.254 61.111 0.00 0.00 0.00 4.75
9445 15673 2.750237 CGCCCAAACCCTAGCCAC 60.750 66.667 0.00 0.00 0.00 5.01
9446 15674 2.763902 GCCCAAACCCTAGCCACT 59.236 61.111 0.00 0.00 0.00 4.00
9447 15675 1.378646 GCCCAAACCCTAGCCACTC 60.379 63.158 0.00 0.00 0.00 3.51
9448 15676 1.303282 CCCAAACCCTAGCCACTCC 59.697 63.158 0.00 0.00 0.00 3.85
9449 15677 1.303282 CCAAACCCTAGCCACTCCC 59.697 63.158 0.00 0.00 0.00 4.30
9450 15678 1.303282 CAAACCCTAGCCACTCCCC 59.697 63.158 0.00 0.00 0.00 4.81
9451 15679 2.298661 AAACCCTAGCCACTCCCCG 61.299 63.158 0.00 0.00 0.00 5.73
9452 15680 3.557695 AACCCTAGCCACTCCCCGT 62.558 63.158 0.00 0.00 0.00 5.28
9453 15681 3.155167 CCCTAGCCACTCCCCGTC 61.155 72.222 0.00 0.00 0.00 4.79
9454 15682 3.155167 CCTAGCCACTCCCCGTCC 61.155 72.222 0.00 0.00 0.00 4.79
9455 15683 2.042843 CTAGCCACTCCCCGTCCT 60.043 66.667 0.00 0.00 0.00 3.85
9456 15684 1.686110 CTAGCCACTCCCCGTCCTT 60.686 63.158 0.00 0.00 0.00 3.36
9457 15685 1.961180 CTAGCCACTCCCCGTCCTTG 61.961 65.000 0.00 0.00 0.00 3.61
9458 15686 2.449967 TAGCCACTCCCCGTCCTTGA 62.450 60.000 0.00 0.00 0.00 3.02
9459 15687 2.890766 GCCACTCCCCGTCCTTGAA 61.891 63.158 0.00 0.00 0.00 2.69
9460 15688 1.003718 CCACTCCCCGTCCTTGAAC 60.004 63.158 0.00 0.00 0.00 3.18
9461 15689 1.481056 CCACTCCCCGTCCTTGAACT 61.481 60.000 0.00 0.00 0.00 3.01
9462 15690 0.037232 CACTCCCCGTCCTTGAACTC 60.037 60.000 0.00 0.00 0.00 3.01
9463 15691 1.215647 CTCCCCGTCCTTGAACTCG 59.784 63.158 0.00 0.00 0.00 4.18
9464 15692 2.434359 CCCCGTCCTTGAACTCGC 60.434 66.667 0.00 0.00 0.00 5.03
9465 15693 2.434359 CCCGTCCTTGAACTCGCC 60.434 66.667 0.00 0.00 0.00 5.54
9466 15694 2.809601 CCGTCCTTGAACTCGCCG 60.810 66.667 0.00 0.00 0.00 6.46
9467 15695 2.809601 CGTCCTTGAACTCGCCGG 60.810 66.667 0.00 0.00 0.00 6.13
9468 15696 3.119096 GTCCTTGAACTCGCCGGC 61.119 66.667 19.07 19.07 0.00 6.13
9469 15697 4.388499 TCCTTGAACTCGCCGGCC 62.388 66.667 23.46 6.80 0.00 6.13
9498 15726 2.169832 CATGGGGCTATGGAACTACG 57.830 55.000 0.00 0.00 0.00 3.51
9499 15727 1.056660 ATGGGGCTATGGAACTACGG 58.943 55.000 0.00 0.00 0.00 4.02
9500 15728 1.070957 GGGGCTATGGAACTACGGC 59.929 63.158 0.00 0.00 0.00 5.68
9501 15729 1.070957 GGGCTATGGAACTACGGCC 59.929 63.158 0.00 0.00 38.92 6.13
9502 15730 1.300697 GGCTATGGAACTACGGCCG 60.301 63.158 26.86 26.86 0.00 6.13
9503 15731 1.954651 GCTATGGAACTACGGCCGC 60.955 63.158 28.58 8.35 0.00 6.53
9504 15732 1.440060 CTATGGAACTACGGCCGCA 59.560 57.895 28.58 12.87 0.00 5.69
9505 15733 0.179094 CTATGGAACTACGGCCGCAA 60.179 55.000 28.58 13.53 0.00 4.85
9506 15734 0.179094 TATGGAACTACGGCCGCAAG 60.179 55.000 28.58 25.10 0.00 4.01
9518 15746 3.423154 CGCAAGGGGAAGCACGAC 61.423 66.667 0.00 0.00 0.00 4.34
9519 15747 3.056328 GCAAGGGGAAGCACGACC 61.056 66.667 0.00 0.00 0.00 4.79
9520 15748 2.742372 CAAGGGGAAGCACGACCG 60.742 66.667 0.00 0.00 0.00 4.79
9521 15749 4.699522 AAGGGGAAGCACGACCGC 62.700 66.667 0.00 0.00 39.01 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.121030 CCGCAACAGGCCGAGAAG 61.121 66.667 0.00 0.00 40.31 2.85
97 98 1.880675 AGAAGCGAACGTCAGAGAAGA 59.119 47.619 0.00 0.00 0.00 2.87
104 105 0.319555 CCCTGAAGAAGCGAACGTCA 60.320 55.000 0.00 0.00 0.00 4.35
128 129 3.211045 ACCGTGTTCTGTGTAGCAAATT 58.789 40.909 0.00 0.00 0.00 1.82
145 146 1.958205 AGAAGACGTCGACGACCGT 60.958 57.895 41.52 28.43 43.02 4.83
175 176 3.060663 GCAGCGTTCGAGAAGTCGC 62.061 63.158 11.28 11.28 46.39 5.19
229 230 5.941555 AACCTCTAAATCTCCGTCTCAAT 57.058 39.130 0.00 0.00 0.00 2.57
257 262 0.100503 GTGCACCGTGAGCAAAACTT 59.899 50.000 5.22 0.00 44.64 2.66
277 282 0.256752 TCCATCTGCATCCACCCAAG 59.743 55.000 0.00 0.00 0.00 3.61
278 283 0.703488 TTCCATCTGCATCCACCCAA 59.297 50.000 0.00 0.00 0.00 4.12
299 307 0.106419 TTTGGGGTGCCGAAGTCTTT 60.106 50.000 0.00 0.00 0.00 2.52
342 364 5.569413 AGCACTTTCAAAAACACTCTTACG 58.431 37.500 0.00 0.00 0.00 3.18
346 368 5.391312 ACAAGCACTTTCAAAAACACTCT 57.609 34.783 0.00 0.00 0.00 3.24
347 369 6.322491 AGTACAAGCACTTTCAAAAACACTC 58.678 36.000 0.00 0.00 0.00 3.51
404 430 5.917541 TTGTGCTACTTAGTTTTCCTTCG 57.082 39.130 0.00 0.00 0.00 3.79
440 466 4.619394 GCAATCTCTCGTCTTCTCTTTCCA 60.619 45.833 0.00 0.00 0.00 3.53
542 568 4.664062 CCACGATTGATGGGCCTT 57.336 55.556 4.53 0.00 33.18 4.35
590 620 1.790818 CTCCCTAACTGTCTACCCCC 58.209 60.000 0.00 0.00 0.00 5.40
591 621 1.121378 GCTCCCTAACTGTCTACCCC 58.879 60.000 0.00 0.00 0.00 4.95
595 625 2.022754 GCTCCGCTCCCTAACTGTCTA 61.023 57.143 0.00 0.00 0.00 2.59
596 626 1.324005 GCTCCGCTCCCTAACTGTCT 61.324 60.000 0.00 0.00 0.00 3.41
598 628 2.711922 CGCTCCGCTCCCTAACTGT 61.712 63.158 0.00 0.00 0.00 3.55
599 629 2.105128 CGCTCCGCTCCCTAACTG 59.895 66.667 0.00 0.00 0.00 3.16
613 643 4.284860 TGAGTGAGTGTGCGCGCT 62.285 61.111 33.29 14.26 37.95 5.92
614 644 3.771491 CTGAGTGAGTGTGCGCGC 61.771 66.667 27.26 27.26 0.00 6.86
615 645 3.771491 GCTGAGTGAGTGTGCGCG 61.771 66.667 0.00 0.00 0.00 6.86
617 647 2.025969 CAGGCTGAGTGAGTGTGCG 61.026 63.158 9.42 0.00 0.00 5.34
651 716 0.490017 TCCACCTCCACCTCCACTTA 59.510 55.000 0.00 0.00 0.00 2.24
653 718 1.229336 CTCCACCTCCACCTCCACT 60.229 63.158 0.00 0.00 0.00 4.00
843 1297 2.030805 GCTTGTCTTGTGTTGGATGGTC 60.031 50.000 0.00 0.00 0.00 4.02
844 1298 1.956477 GCTTGTCTTGTGTTGGATGGT 59.044 47.619 0.00 0.00 0.00 3.55
926 1392 9.460019 TCTATCTATCTATCAGACCAGTCAATG 57.540 37.037 0.00 0.00 0.00 2.82
998 1494 3.071312 GCTCATCATCACCTTCTCCATCT 59.929 47.826 0.00 0.00 0.00 2.90
1027 1523 2.099652 CTGCAACTCCAGTCACCCGA 62.100 60.000 0.00 0.00 0.00 5.14
1097 1593 4.148825 CGCCCAGCTTAGCCTCGT 62.149 66.667 0.00 0.00 0.00 4.18
1260 1756 4.204028 AACCCCCAGTTGTGCGCT 62.204 61.111 9.73 0.00 37.29 5.92
1345 1841 7.386573 GCTTCATTAAAAGTAGAGATAGGAGCC 59.613 40.741 0.00 0.00 0.00 4.70
1346 1842 7.928706 TGCTTCATTAAAAGTAGAGATAGGAGC 59.071 37.037 0.00 0.00 0.00 4.70
1347 1843 9.474920 CTGCTTCATTAAAAGTAGAGATAGGAG 57.525 37.037 0.13 0.00 40.27 3.69
1348 1844 8.982723 ACTGCTTCATTAAAAGTAGAGATAGGA 58.017 33.333 10.77 0.00 40.27 2.94
1349 1845 9.039870 CACTGCTTCATTAAAAGTAGAGATAGG 57.960 37.037 10.77 0.00 40.27 2.57
1350 1846 9.039870 CCACTGCTTCATTAAAAGTAGAGATAG 57.960 37.037 10.77 0.00 40.27 2.08
1351 1847 7.987458 CCCACTGCTTCATTAAAAGTAGAGATA 59.013 37.037 10.77 0.00 40.27 1.98
1368 1864 3.327757 TGAAGACTATTCACCCACTGCTT 59.672 43.478 0.00 0.00 0.00 3.91
1375 1871 3.329929 AACCGTGAAGACTATTCACCC 57.670 47.619 13.50 0.00 44.29 4.61
1473 1984 6.542370 AGAAAGGAAAGTTCTGATTCGTTCAA 59.458 34.615 9.58 0.00 33.83 2.69
1494 2005 8.564574 ACATTTCTTAATAACTTGCGTCAGAAA 58.435 29.630 0.00 0.00 34.44 2.52
1512 2023 8.853126 TGATTCTTTCACATGAAGACATTTCTT 58.147 29.630 0.00 0.00 45.35 2.52
1515 2026 9.635520 GATTGATTCTTTCACATGAAGACATTT 57.364 29.630 0.00 0.00 35.21 2.32
1524 2035 6.778108 TGATCGTGATTGATTCTTTCACATG 58.222 36.000 15.23 0.00 39.75 3.21
1629 2140 8.862325 ATGTTATTCACCAACTCAGACATTAA 57.138 30.769 0.00 0.00 0.00 1.40
1651 2178 3.078837 AGCGAAAATAAACCGTGGATGT 58.921 40.909 0.00 0.00 0.00 3.06
1683 2210 0.970937 GAGATGGTGAGACGGGGACA 60.971 60.000 0.00 0.00 0.00 4.02
1690 2217 3.922171 AAATGAGGGAGATGGTGAGAC 57.078 47.619 0.00 0.00 0.00 3.36
1857 2385 2.629617 AGGTGATTTGTTTGGAAGCTGG 59.370 45.455 0.00 0.00 0.00 4.85
2150 2763 0.039527 GCGTTGCCCTTTGTGTTAGG 60.040 55.000 0.00 0.00 0.00 2.69
2152 2765 2.034607 GGCGTTGCCCTTTGTGTTA 58.965 52.632 0.00 0.00 44.06 2.41
2153 2766 2.811799 GGCGTTGCCCTTTGTGTT 59.188 55.556 0.00 0.00 44.06 3.32
2278 2892 2.128507 GGGAGGGCACGTAGAGGAG 61.129 68.421 0.00 0.00 0.00 3.69
2915 3544 9.753674 AAAAGGATCTATTCACCATTTACTCAA 57.246 29.630 0.00 0.00 0.00 3.02
3494 4280 3.318557 TCATGTGCATGTGTCACAACATT 59.681 39.130 15.88 5.81 46.07 2.71
3591 4378 7.826690 AGTACAAATCAAGCCGAACATATTTT 58.173 30.769 0.00 0.00 0.00 1.82
3884 4671 6.585695 TCGTGAAGACTATTCTACCAACTT 57.414 37.500 0.00 0.00 0.00 2.66
3991 4786 2.766400 CGGTGTTTGTGCGGGTTGT 61.766 57.895 0.00 0.00 0.00 3.32
4129 4924 2.243810 GTTCTAGGGATCTGGCGATCT 58.756 52.381 15.39 3.90 44.42 2.75
4137 4932 1.455959 AGCGGCGTTCTAGGGATCT 60.456 57.895 9.37 0.00 0.00 2.75
4218 5013 4.093743 ACCCTCTTCTCCTTCTTCTTCTC 58.906 47.826 0.00 0.00 0.00 2.87
5850 7338 1.383248 ATGGAGAAGAGGTCGGGGG 60.383 63.158 0.00 0.00 0.00 5.40
5901 7389 4.401519 CGAGACACCCTAAGTCAATAAGGA 59.598 45.833 0.00 0.00 38.46 3.36
6149 7641 3.699413 TCCATTGCCACATGAAGATTCA 58.301 40.909 0.00 0.00 42.14 2.57
6151 7643 3.640029 GGATCCATTGCCACATGAAGATT 59.360 43.478 6.95 0.00 0.00 2.40
6841 8611 6.777580 ACTTTTCCATGGTTAATTGTCAGTCT 59.222 34.615 12.58 0.00 0.00 3.24
6861 8631 6.265196 TGAACTTTCCATGATGCACTACTTTT 59.735 34.615 0.00 0.00 0.00 2.27
6881 8651 7.054124 TCTGTTGATTTTTCTAGTGGTGAACT 58.946 34.615 0.00 0.00 43.40 3.01
6959 9278 7.493320 CGTAAGCACTACATTCTTAACCCAATA 59.507 37.037 0.00 0.00 0.00 1.90
7388 9716 5.650266 TCAAGGTTCAACAACACACTGTATT 59.350 36.000 0.00 0.00 33.70 1.89
7874 13969 4.990543 TGATGCGCTTAAGATATTTCCG 57.009 40.909 9.73 0.00 0.00 4.30
8145 14273 4.158764 AGCATAACCGATTAGCTAGCTAGG 59.841 45.833 23.03 22.06 33.06 3.02
8173 14305 6.732896 AAGCTAGCTTTAATCTAGGCACTA 57.267 37.500 24.42 0.00 33.96 2.74
8174 14306 5.622346 AAGCTAGCTTTAATCTAGGCACT 57.378 39.130 24.42 0.00 35.93 4.40
8175 14307 5.237561 GGAAAGCTAGCTTTAATCTAGGCAC 59.762 44.000 36.22 21.59 45.16 5.01
8267 14433 0.659123 GTTGGCGTAGTTTTGCACGG 60.659 55.000 0.00 0.00 38.57 4.94
8342 14508 2.109834 TGGGATGGGTTGAATTCACAGT 59.890 45.455 7.89 0.00 0.00 3.55
8377 14551 2.096713 CCTCGTCGCAAACAAGAAGAAG 60.097 50.000 0.00 0.00 0.00 2.85
8378 14552 1.864711 CCTCGTCGCAAACAAGAAGAA 59.135 47.619 0.00 0.00 0.00 2.52
8379 14553 1.497991 CCTCGTCGCAAACAAGAAGA 58.502 50.000 0.00 0.00 0.00 2.87
8577 14780 4.338012 AGGACTCATGATTGTTCATTGCA 58.662 39.130 0.00 0.00 40.70 4.08
8582 14785 4.286808 TCCTTGAGGACTCATGATTGTTCA 59.713 41.667 14.61 0.00 39.78 3.18
8668 14875 2.831685 AATTGTCGTGTGTAGCAGGA 57.168 45.000 0.00 0.00 39.38 3.86
8669 14876 4.727734 GCATAAATTGTCGTGTGTAGCAGG 60.728 45.833 0.00 0.00 0.00 4.85
8670 14877 4.142924 TGCATAAATTGTCGTGTGTAGCAG 60.143 41.667 0.00 0.00 0.00 4.24
8671 14878 3.748568 TGCATAAATTGTCGTGTGTAGCA 59.251 39.130 0.00 0.00 0.00 3.49
8672 14879 4.088648 GTGCATAAATTGTCGTGTGTAGC 58.911 43.478 0.00 0.00 0.00 3.58
8673 14880 4.090786 TCGTGCATAAATTGTCGTGTGTAG 59.909 41.667 0.00 0.00 0.00 2.74
8674 14881 3.988517 TCGTGCATAAATTGTCGTGTGTA 59.011 39.130 0.00 0.00 0.00 2.90
8675 14882 2.803386 TCGTGCATAAATTGTCGTGTGT 59.197 40.909 0.00 0.00 0.00 3.72
8676 14883 3.447752 TCGTGCATAAATTGTCGTGTG 57.552 42.857 0.00 0.00 0.00 3.82
8677 14884 3.435327 ACATCGTGCATAAATTGTCGTGT 59.565 39.130 0.00 0.00 0.00 4.49
8678 14885 4.002267 ACATCGTGCATAAATTGTCGTG 57.998 40.909 0.00 0.00 0.00 4.35
8679 14886 4.678509 AACATCGTGCATAAATTGTCGT 57.321 36.364 0.00 0.00 0.00 4.34
8680 14887 4.258977 GCAAACATCGTGCATAAATTGTCG 60.259 41.667 0.00 0.00 41.80 4.35
8681 14888 4.620609 TGCAAACATCGTGCATAAATTGTC 59.379 37.500 0.00 0.00 46.76 3.18
8682 14889 4.554292 TGCAAACATCGTGCATAAATTGT 58.446 34.783 0.00 0.00 46.76 2.71
8691 14898 1.788203 CGTCGTGCAAACATCGTGC 60.788 57.895 0.00 0.00 42.55 5.34
8692 14899 0.179275 CTCGTCGTGCAAACATCGTG 60.179 55.000 0.00 0.00 0.00 4.35
8693 14900 0.318360 TCTCGTCGTGCAAACATCGT 60.318 50.000 0.00 0.00 0.00 3.73
8694 14901 0.091344 GTCTCGTCGTGCAAACATCG 59.909 55.000 0.00 0.00 0.00 3.84
8695 14902 1.136690 TGTCTCGTCGTGCAAACATC 58.863 50.000 0.00 0.00 0.00 3.06
8696 14903 1.577468 TTGTCTCGTCGTGCAAACAT 58.423 45.000 0.00 0.00 0.00 2.71
8697 14904 1.525197 GATTGTCTCGTCGTGCAAACA 59.475 47.619 0.00 0.00 0.00 2.83
8698 14905 1.525197 TGATTGTCTCGTCGTGCAAAC 59.475 47.619 0.00 0.00 0.00 2.93
8699 14906 1.859383 TGATTGTCTCGTCGTGCAAA 58.141 45.000 0.00 0.00 0.00 3.68
8700 14907 1.792367 CTTGATTGTCTCGTCGTGCAA 59.208 47.619 0.00 0.00 0.00 4.08
8701 14908 1.418373 CTTGATTGTCTCGTCGTGCA 58.582 50.000 0.00 0.00 0.00 4.57
8702 14909 0.093705 GCTTGATTGTCTCGTCGTGC 59.906 55.000 0.00 0.00 0.00 5.34
8703 14910 0.716108 GGCTTGATTGTCTCGTCGTG 59.284 55.000 0.00 0.00 0.00 4.35
8704 14911 0.732880 CGGCTTGATTGTCTCGTCGT 60.733 55.000 0.00 0.00 0.00 4.34
8705 14912 0.732880 ACGGCTTGATTGTCTCGTCG 60.733 55.000 0.00 0.00 0.00 5.12
8706 14913 0.992802 GACGGCTTGATTGTCTCGTC 59.007 55.000 0.00 0.00 39.73 4.20
8707 14914 0.389948 GGACGGCTTGATTGTCTCGT 60.390 55.000 0.00 0.00 33.21 4.18
8708 14915 0.389817 TGGACGGCTTGATTGTCTCG 60.390 55.000 0.00 0.00 33.21 4.04
8709 14916 1.667724 CATGGACGGCTTGATTGTCTC 59.332 52.381 0.00 0.00 33.21 3.36
8710 14917 1.742761 CATGGACGGCTTGATTGTCT 58.257 50.000 0.00 0.00 33.21 3.41
8711 14918 0.099436 GCATGGACGGCTTGATTGTC 59.901 55.000 0.00 0.00 0.00 3.18
8712 14919 0.608856 TGCATGGACGGCTTGATTGT 60.609 50.000 0.00 0.00 0.00 2.71
8713 14920 0.742505 ATGCATGGACGGCTTGATTG 59.257 50.000 0.00 0.00 0.00 2.67
8714 14921 0.742505 CATGCATGGACGGCTTGATT 59.257 50.000 19.40 0.00 38.33 2.57
8715 14922 1.731433 GCATGCATGGACGGCTTGAT 61.731 55.000 27.34 0.00 38.33 2.57
8716 14923 2.409055 GCATGCATGGACGGCTTGA 61.409 57.895 27.34 0.00 38.33 3.02
8717 14924 2.103538 GCATGCATGGACGGCTTG 59.896 61.111 27.34 0.94 38.87 4.01
8718 14925 2.361483 TGCATGCATGGACGGCTT 60.361 55.556 27.34 0.00 0.00 4.35
8719 14926 2.827190 CTGCATGCATGGACGGCT 60.827 61.111 27.34 0.00 0.00 5.52
8720 14927 4.564116 GCTGCATGCATGGACGGC 62.564 66.667 27.34 22.43 42.31 5.68
8729 14936 4.175489 CTGCCGTCTGCTGCATGC 62.175 66.667 11.82 11.82 42.00 4.06
8734 14941 3.420606 CTGTGCTGCCGTCTGCTG 61.421 66.667 0.00 0.00 42.00 4.41
8738 14945 3.220999 TAACGCTGTGCTGCCGTCT 62.221 57.895 0.00 0.00 0.00 4.18
8739 14946 2.730672 CTAACGCTGTGCTGCCGTC 61.731 63.158 0.00 0.00 0.00 4.79
8740 14947 2.738521 CTAACGCTGTGCTGCCGT 60.739 61.111 0.00 0.00 0.00 5.68
8741 14948 2.730672 GACTAACGCTGTGCTGCCG 61.731 63.158 0.00 0.00 0.00 5.69
8742 14949 1.021390 ATGACTAACGCTGTGCTGCC 61.021 55.000 0.00 0.00 0.00 4.85
8743 14950 0.095935 CATGACTAACGCTGTGCTGC 59.904 55.000 0.00 0.00 0.00 5.25
8744 14951 1.127397 CACATGACTAACGCTGTGCTG 59.873 52.381 0.00 0.00 33.35 4.41
8745 14952 1.432514 CACATGACTAACGCTGTGCT 58.567 50.000 0.00 0.00 33.35 4.40
8746 14953 0.443869 CCACATGACTAACGCTGTGC 59.556 55.000 0.00 0.00 38.10 4.57
8747 14954 2.078849 TCCACATGACTAACGCTGTG 57.921 50.000 0.00 0.00 38.92 3.66
8748 14955 2.299013 TCTTCCACATGACTAACGCTGT 59.701 45.455 0.00 0.00 0.00 4.40
8749 14956 2.926200 CTCTTCCACATGACTAACGCTG 59.074 50.000 0.00 0.00 0.00 5.18
8750 14957 2.093973 CCTCTTCCACATGACTAACGCT 60.094 50.000 0.00 0.00 0.00 5.07
8751 14958 2.094182 TCCTCTTCCACATGACTAACGC 60.094 50.000 0.00 0.00 0.00 4.84
8752 14959 3.775202 CTCCTCTTCCACATGACTAACG 58.225 50.000 0.00 0.00 0.00 3.18
8753 14960 3.526534 GCTCCTCTTCCACATGACTAAC 58.473 50.000 0.00 0.00 0.00 2.34
8829 15044 2.855280 GCCAAAAACACGCGCACAC 61.855 57.895 5.73 0.00 0.00 3.82
9016 15244 5.413833 GCACAAGCAAGGCATCTATATATGT 59.586 40.000 0.00 0.00 41.58 2.29
9057 15285 3.475774 GTCGCGCGGTAGTGTTGG 61.476 66.667 31.69 0.00 0.00 3.77
9059 15287 4.729856 GGGTCGCGCGGTAGTGTT 62.730 66.667 31.69 0.00 0.00 3.32
9063 15291 4.524318 AATGGGGTCGCGCGGTAG 62.524 66.667 31.69 0.71 0.00 3.18
9064 15292 2.236223 TAAAATGGGGTCGCGCGGTA 62.236 55.000 31.69 8.95 0.00 4.02
9065 15293 2.879813 ATAAAATGGGGTCGCGCGGT 62.880 55.000 31.69 6.43 0.00 5.68
9066 15294 2.113131 GATAAAATGGGGTCGCGCGG 62.113 60.000 31.69 11.75 0.00 6.46
9067 15295 1.157870 AGATAAAATGGGGTCGCGCG 61.158 55.000 26.76 26.76 0.00 6.86
9068 15296 0.307760 CAGATAAAATGGGGTCGCGC 59.692 55.000 0.00 0.00 0.00 6.86
9069 15297 0.944386 CCAGATAAAATGGGGTCGCG 59.056 55.000 0.00 0.00 33.94 5.87
9070 15298 0.668535 GCCAGATAAAATGGGGTCGC 59.331 55.000 0.00 0.00 38.33 5.19
9071 15299 1.318576 GGCCAGATAAAATGGGGTCG 58.681 55.000 0.00 0.00 38.33 4.79
9072 15300 1.704641 GGGCCAGATAAAATGGGGTC 58.295 55.000 4.39 0.00 38.33 4.46
9073 15301 0.264657 GGGGCCAGATAAAATGGGGT 59.735 55.000 4.39 0.00 38.33 4.95
9074 15302 0.264359 TGGGGCCAGATAAAATGGGG 59.736 55.000 4.39 0.00 38.33 4.96
9075 15303 2.250924 GATGGGGCCAGATAAAATGGG 58.749 52.381 4.39 0.00 38.33 4.00
9076 15304 2.250924 GGATGGGGCCAGATAAAATGG 58.749 52.381 4.39 0.00 41.04 3.16
9077 15305 1.888512 CGGATGGGGCCAGATAAAATG 59.111 52.381 4.39 0.00 0.00 2.32
9078 15306 1.499007 ACGGATGGGGCCAGATAAAAT 59.501 47.619 4.39 0.00 0.00 1.82
9079 15307 0.923358 ACGGATGGGGCCAGATAAAA 59.077 50.000 4.39 0.00 0.00 1.52
9080 15308 0.923358 AACGGATGGGGCCAGATAAA 59.077 50.000 4.39 0.00 0.00 1.40
9081 15309 0.923358 AAACGGATGGGGCCAGATAA 59.077 50.000 4.39 0.00 0.00 1.75
9082 15310 0.182537 CAAACGGATGGGGCCAGATA 59.817 55.000 4.39 0.00 0.00 1.98
9083 15311 1.076777 CAAACGGATGGGGCCAGAT 60.077 57.895 4.39 0.00 0.00 2.90
9084 15312 2.354729 CAAACGGATGGGGCCAGA 59.645 61.111 4.39 0.00 0.00 3.86
9085 15313 2.755469 CCAAACGGATGGGGCCAG 60.755 66.667 4.39 0.00 36.79 4.85
9091 15319 3.158676 TCTTTTTACCCCAAACGGATGG 58.841 45.455 1.96 1.96 40.35 3.51
9092 15320 4.857509 TTCTTTTTACCCCAAACGGATG 57.142 40.909 0.00 0.00 0.00 3.51
9093 15321 7.541916 TTTATTCTTTTTACCCCAAACGGAT 57.458 32.000 0.00 0.00 0.00 4.18
9094 15322 6.973460 TTTATTCTTTTTACCCCAAACGGA 57.027 33.333 0.00 0.00 0.00 4.69
9095 15323 6.528774 CGATTTATTCTTTTTACCCCAAACGG 59.471 38.462 0.00 0.00 0.00 4.44
9096 15324 6.528774 CCGATTTATTCTTTTTACCCCAAACG 59.471 38.462 0.00 0.00 0.00 3.60
9097 15325 6.814644 CCCGATTTATTCTTTTTACCCCAAAC 59.185 38.462 0.00 0.00 0.00 2.93
9098 15326 6.574662 GCCCGATTTATTCTTTTTACCCCAAA 60.575 38.462 0.00 0.00 0.00 3.28
9099 15327 5.105269 GCCCGATTTATTCTTTTTACCCCAA 60.105 40.000 0.00 0.00 0.00 4.12
9100 15328 4.403113 GCCCGATTTATTCTTTTTACCCCA 59.597 41.667 0.00 0.00 0.00 4.96
9101 15329 4.498513 CGCCCGATTTATTCTTTTTACCCC 60.499 45.833 0.00 0.00 0.00 4.95
9102 15330 4.498513 CCGCCCGATTTATTCTTTTTACCC 60.499 45.833 0.00 0.00 0.00 3.69
9103 15331 4.603985 CCGCCCGATTTATTCTTTTTACC 58.396 43.478 0.00 0.00 0.00 2.85
9104 15332 4.039703 GCCGCCCGATTTATTCTTTTTAC 58.960 43.478 0.00 0.00 0.00 2.01
9105 15333 3.949113 AGCCGCCCGATTTATTCTTTTTA 59.051 39.130 0.00 0.00 0.00 1.52
9106 15334 2.758423 AGCCGCCCGATTTATTCTTTTT 59.242 40.909 0.00 0.00 0.00 1.94
9107 15335 2.357952 GAGCCGCCCGATTTATTCTTTT 59.642 45.455 0.00 0.00 0.00 2.27
9108 15336 1.947456 GAGCCGCCCGATTTATTCTTT 59.053 47.619 0.00 0.00 0.00 2.52
9109 15337 1.134220 TGAGCCGCCCGATTTATTCTT 60.134 47.619 0.00 0.00 0.00 2.52
9110 15338 0.468226 TGAGCCGCCCGATTTATTCT 59.532 50.000 0.00 0.00 0.00 2.40
9111 15339 0.868406 CTGAGCCGCCCGATTTATTC 59.132 55.000 0.00 0.00 0.00 1.75
9112 15340 1.166531 GCTGAGCCGCCCGATTTATT 61.167 55.000 0.00 0.00 0.00 1.40
9113 15341 1.598130 GCTGAGCCGCCCGATTTAT 60.598 57.895 0.00 0.00 0.00 1.40
9114 15342 2.203015 GCTGAGCCGCCCGATTTA 60.203 61.111 0.00 0.00 0.00 1.40
9135 15363 4.570663 GATGGGTCCGAGCCGTCG 62.571 72.222 20.36 0.00 41.33 5.12
9137 15365 2.683933 AAGATGGGTCCGAGCCGT 60.684 61.111 11.24 11.24 38.98 5.68
9138 15366 2.202932 CAAGATGGGTCCGAGCCG 60.203 66.667 11.95 0.00 38.98 5.52
9139 15367 1.153349 GACAAGATGGGTCCGAGCC 60.153 63.158 9.85 9.85 36.00 4.70
9140 15368 1.153349 GGACAAGATGGGTCCGAGC 60.153 63.158 0.00 0.00 44.80 5.03
9145 15373 2.031157 CACAAAACGGACAAGATGGGTC 60.031 50.000 0.00 0.00 34.52 4.46
9146 15374 1.953686 CACAAAACGGACAAGATGGGT 59.046 47.619 0.00 0.00 0.00 4.51
9147 15375 1.953686 ACACAAAACGGACAAGATGGG 59.046 47.619 0.00 0.00 0.00 4.00
9148 15376 2.031157 GGACACAAAACGGACAAGATGG 60.031 50.000 0.00 0.00 0.00 3.51
9149 15377 2.349438 CGGACACAAAACGGACAAGATG 60.349 50.000 0.00 0.00 0.00 2.90
9150 15378 1.871039 CGGACACAAAACGGACAAGAT 59.129 47.619 0.00 0.00 0.00 2.40
9151 15379 1.292061 CGGACACAAAACGGACAAGA 58.708 50.000 0.00 0.00 0.00 3.02
9152 15380 3.817960 CGGACACAAAACGGACAAG 57.182 52.632 0.00 0.00 0.00 3.16
9157 15385 3.666253 GGCCCGGACACAAAACGG 61.666 66.667 0.73 0.00 46.79 4.44
9158 15386 4.020378 CGGCCCGGACACAAAACG 62.020 66.667 0.73 0.00 0.00 3.60
9159 15387 2.592287 TCGGCCCGGACACAAAAC 60.592 61.111 0.73 0.00 0.00 2.43
9160 15388 2.592287 GTCGGCCCGGACACAAAA 60.592 61.111 0.73 0.00 36.91 2.44
9161 15389 4.629523 GGTCGGCCCGGACACAAA 62.630 66.667 0.73 0.00 38.70 2.83
9171 15399 3.202706 GCTCGAAATGGGTCGGCC 61.203 66.667 0.00 0.00 41.43 6.13
9172 15400 3.564027 CGCTCGAAATGGGTCGGC 61.564 66.667 0.00 0.00 41.43 5.54
9173 15401 3.564027 GCGCTCGAAATGGGTCGG 61.564 66.667 0.00 0.00 41.43 4.79
9174 15402 1.906994 TTTGCGCTCGAAATGGGTCG 61.907 55.000 9.73 0.00 42.48 4.79
9175 15403 0.454452 GTTTGCGCTCGAAATGGGTC 60.454 55.000 9.73 0.00 0.00 4.46
9176 15404 0.889186 AGTTTGCGCTCGAAATGGGT 60.889 50.000 9.73 0.00 0.00 4.51
9177 15405 0.240945 AAGTTTGCGCTCGAAATGGG 59.759 50.000 9.73 0.00 0.00 4.00
9178 15406 1.330306 CAAGTTTGCGCTCGAAATGG 58.670 50.000 9.73 0.00 0.00 3.16
9179 15407 1.710249 CACAAGTTTGCGCTCGAAATG 59.290 47.619 9.73 3.48 0.00 2.32
9180 15408 1.925946 GCACAAGTTTGCGCTCGAAAT 60.926 47.619 9.73 0.00 33.67 2.17
9181 15409 0.591236 GCACAAGTTTGCGCTCGAAA 60.591 50.000 9.73 0.00 33.67 3.46
9182 15410 1.010125 GCACAAGTTTGCGCTCGAA 60.010 52.632 9.73 0.00 33.67 3.71
9183 15411 2.631428 GCACAAGTTTGCGCTCGA 59.369 55.556 9.73 0.00 33.67 4.04
9184 15412 2.427410 GGCACAAGTTTGCGCTCG 60.427 61.111 9.73 0.00 44.00 5.03
9185 15413 1.370900 CAGGCACAAGTTTGCGCTC 60.371 57.895 9.73 0.00 44.00 5.03
9186 15414 2.723746 CAGGCACAAGTTTGCGCT 59.276 55.556 9.73 0.00 44.00 5.92
9187 15415 2.355009 CCAGGCACAAGTTTGCGC 60.355 61.111 0.00 0.00 44.00 6.09
9188 15416 0.179113 AAACCAGGCACAAGTTTGCG 60.179 50.000 0.00 0.00 44.00 4.85
9189 15417 1.289276 CAAACCAGGCACAAGTTTGC 58.711 50.000 7.60 2.54 43.06 3.68
9190 15418 1.473080 CCCAAACCAGGCACAAGTTTG 60.473 52.381 11.66 11.66 46.23 2.93
9191 15419 0.829990 CCCAAACCAGGCACAAGTTT 59.170 50.000 0.00 0.00 36.49 2.66
9192 15420 0.325203 ACCCAAACCAGGCACAAGTT 60.325 50.000 0.00 0.00 0.00 2.66
9193 15421 0.755327 GACCCAAACCAGGCACAAGT 60.755 55.000 0.00 0.00 0.00 3.16
9194 15422 1.795170 CGACCCAAACCAGGCACAAG 61.795 60.000 0.00 0.00 0.00 3.16
9195 15423 1.826054 CGACCCAAACCAGGCACAA 60.826 57.895 0.00 0.00 0.00 3.33
9196 15424 2.203280 CGACCCAAACCAGGCACA 60.203 61.111 0.00 0.00 0.00 4.57
9197 15425 3.670377 GCGACCCAAACCAGGCAC 61.670 66.667 0.00 0.00 0.00 5.01
9200 15428 3.047877 GTCGCGACCCAAACCAGG 61.048 66.667 28.61 0.00 0.00 4.45
9201 15429 3.411351 CGTCGCGACCCAAACCAG 61.411 66.667 31.84 12.61 0.00 4.00
9202 15430 4.973055 CCGTCGCGACCCAAACCA 62.973 66.667 31.84 0.00 0.00 3.67
9203 15431 4.668118 TCCGTCGCGACCCAAACC 62.668 66.667 31.84 7.13 0.00 3.27
9204 15432 3.408851 GTCCGTCGCGACCCAAAC 61.409 66.667 31.84 20.10 0.00 2.93
9215 15443 3.408851 GTCCGTTTGCCGTCCGTC 61.409 66.667 0.00 0.00 33.66 4.79
9247 15475 4.814294 CTACCACGCGGCCCTGAC 62.814 72.222 12.47 0.00 34.57 3.51
9249 15477 4.814294 GTCTACCACGCGGCCCTG 62.814 72.222 12.47 0.00 34.57 4.45
9259 15487 0.260816 AGATAGGTGGCCGTCTACCA 59.739 55.000 12.26 0.00 39.46 3.25
9260 15488 1.340568 GAAGATAGGTGGCCGTCTACC 59.659 57.143 6.98 4.51 37.23 3.18
9261 15489 1.340568 GGAAGATAGGTGGCCGTCTAC 59.659 57.143 6.98 0.00 0.00 2.59
9262 15490 1.063492 TGGAAGATAGGTGGCCGTCTA 60.063 52.381 0.00 2.40 0.00 2.59
9263 15491 0.325296 TGGAAGATAGGTGGCCGTCT 60.325 55.000 0.00 0.00 0.00 4.18
9264 15492 0.759346 ATGGAAGATAGGTGGCCGTC 59.241 55.000 0.00 0.00 0.00 4.79
9265 15493 0.759346 GATGGAAGATAGGTGGCCGT 59.241 55.000 0.00 0.00 0.00 5.68
9266 15494 1.051812 AGATGGAAGATAGGTGGCCG 58.948 55.000 0.00 0.00 0.00 6.13
9267 15495 1.544314 GCAGATGGAAGATAGGTGGCC 60.544 57.143 0.00 0.00 0.00 5.36
9268 15496 1.544314 GGCAGATGGAAGATAGGTGGC 60.544 57.143 0.00 0.00 0.00 5.01
9269 15497 1.770658 TGGCAGATGGAAGATAGGTGG 59.229 52.381 0.00 0.00 0.00 4.61
9270 15498 3.209410 GTTGGCAGATGGAAGATAGGTG 58.791 50.000 0.00 0.00 0.00 4.00
9271 15499 2.846206 TGTTGGCAGATGGAAGATAGGT 59.154 45.455 0.00 0.00 0.00 3.08
9272 15500 3.565764 TGTTGGCAGATGGAAGATAGG 57.434 47.619 0.00 0.00 0.00 2.57
9273 15501 4.711399 TGATGTTGGCAGATGGAAGATAG 58.289 43.478 0.00 0.00 0.00 2.08
9274 15502 4.776435 TGATGTTGGCAGATGGAAGATA 57.224 40.909 0.00 0.00 0.00 1.98
9275 15503 3.657398 TGATGTTGGCAGATGGAAGAT 57.343 42.857 0.00 0.00 0.00 2.40
9276 15504 3.438216 TTGATGTTGGCAGATGGAAGA 57.562 42.857 0.00 0.00 0.00 2.87
9277 15505 3.737047 GCATTGATGTTGGCAGATGGAAG 60.737 47.826 0.00 0.00 0.00 3.46
9278 15506 2.166870 GCATTGATGTTGGCAGATGGAA 59.833 45.455 0.00 0.00 0.00 3.53
9279 15507 1.752498 GCATTGATGTTGGCAGATGGA 59.248 47.619 0.00 0.00 0.00 3.41
9280 15508 1.535226 CGCATTGATGTTGGCAGATGG 60.535 52.381 0.00 0.00 0.00 3.51
9281 15509 1.835121 CGCATTGATGTTGGCAGATG 58.165 50.000 0.00 0.00 0.00 2.90
9282 15510 0.101759 GCGCATTGATGTTGGCAGAT 59.898 50.000 0.30 0.00 0.00 2.90
9283 15511 1.242665 TGCGCATTGATGTTGGCAGA 61.243 50.000 5.66 0.00 0.00 4.26
9284 15512 0.179121 ATGCGCATTGATGTTGGCAG 60.179 50.000 19.28 0.00 35.39 4.85
9285 15513 0.458716 CATGCGCATTGATGTTGGCA 60.459 50.000 22.81 8.24 35.98 4.92
9286 15514 1.149361 CCATGCGCATTGATGTTGGC 61.149 55.000 22.81 0.00 0.00 4.52
9287 15515 0.528901 CCCATGCGCATTGATGTTGG 60.529 55.000 22.81 18.50 0.00 3.77
9288 15516 1.149361 GCCCATGCGCATTGATGTTG 61.149 55.000 22.81 9.26 0.00 3.33
9289 15517 1.142314 GCCCATGCGCATTGATGTT 59.858 52.632 22.81 0.00 0.00 2.71
9290 15518 2.809706 GCCCATGCGCATTGATGT 59.190 55.556 22.81 0.00 0.00 3.06
9310 15538 2.044946 GGATGACAGGTGGGCCAC 60.045 66.667 28.69 28.69 37.19 5.01
9311 15539 3.716195 CGGATGACAGGTGGGCCA 61.716 66.667 0.00 0.00 37.19 5.36
9312 15540 4.489771 CCGGATGACAGGTGGGCC 62.490 72.222 0.00 0.00 0.00 5.80
9313 15541 3.682292 GACCGGATGACAGGTGGGC 62.682 68.421 9.46 0.00 44.03 5.36
9314 15542 1.626356 ATGACCGGATGACAGGTGGG 61.626 60.000 9.46 0.00 44.03 4.61
9315 15543 0.179073 GATGACCGGATGACAGGTGG 60.179 60.000 9.46 0.00 44.03 4.61
9316 15544 0.528466 CGATGACCGGATGACAGGTG 60.528 60.000 9.46 0.00 44.03 4.00
9317 15545 0.683179 TCGATGACCGGATGACAGGT 60.683 55.000 9.46 0.00 46.44 4.00
9318 15546 0.459899 TTCGATGACCGGATGACAGG 59.540 55.000 9.46 0.00 39.14 4.00
9319 15547 1.560923 GTTCGATGACCGGATGACAG 58.439 55.000 9.46 0.00 39.14 3.51
9320 15548 0.179148 CGTTCGATGACCGGATGACA 60.179 55.000 9.46 2.86 34.70 3.58
9321 15549 0.870307 CCGTTCGATGACCGGATGAC 60.870 60.000 9.46 0.00 44.41 3.06
9322 15550 1.317431 ACCGTTCGATGACCGGATGA 61.317 55.000 9.46 0.00 44.41 2.92
9323 15551 0.870307 GACCGTTCGATGACCGGATG 60.870 60.000 9.46 0.00 44.41 3.51
9324 15552 1.436336 GACCGTTCGATGACCGGAT 59.564 57.895 9.46 0.00 44.41 4.18
9325 15553 2.879907 GACCGTTCGATGACCGGA 59.120 61.111 9.46 0.00 44.41 5.14
9339 15567 1.664151 CATTTAAGAAGGACGGCGACC 59.336 52.381 20.56 20.56 0.00 4.79
9340 15568 1.664151 CCATTTAAGAAGGACGGCGAC 59.336 52.381 16.62 7.58 0.00 5.19
9341 15569 1.406341 CCCATTTAAGAAGGACGGCGA 60.406 52.381 16.62 0.00 0.00 5.54
9342 15570 1.014352 CCCATTTAAGAAGGACGGCG 58.986 55.000 4.80 4.80 0.00 6.46
9343 15571 2.014857 GTCCCATTTAAGAAGGACGGC 58.985 52.381 4.66 0.00 39.47 5.68
9346 15574 2.026542 ACGGGTCCCATTTAAGAAGGAC 60.027 50.000 9.12 10.05 46.65 3.85
9347 15575 2.026636 CACGGGTCCCATTTAAGAAGGA 60.027 50.000 9.12 0.00 0.00 3.36
9348 15576 2.026636 TCACGGGTCCCATTTAAGAAGG 60.027 50.000 9.12 0.00 0.00 3.46
9349 15577 3.343941 TCACGGGTCCCATTTAAGAAG 57.656 47.619 9.12 0.00 0.00 2.85
9350 15578 3.414269 GTTCACGGGTCCCATTTAAGAA 58.586 45.455 9.12 0.00 0.00 2.52
9351 15579 2.290450 GGTTCACGGGTCCCATTTAAGA 60.290 50.000 9.12 0.00 0.00 2.10
9352 15580 2.089201 GGTTCACGGGTCCCATTTAAG 58.911 52.381 9.12 0.00 0.00 1.85
9353 15581 1.611148 CGGTTCACGGGTCCCATTTAA 60.611 52.381 9.12 0.00 39.42 1.52
9354 15582 0.036199 CGGTTCACGGGTCCCATTTA 60.036 55.000 9.12 0.00 39.42 1.40
9355 15583 1.302993 CGGTTCACGGGTCCCATTT 60.303 57.895 9.12 0.00 39.42 2.32
9356 15584 2.349755 CGGTTCACGGGTCCCATT 59.650 61.111 9.12 0.00 39.42 3.16
9365 15593 2.798262 GACGACGACCGGTTCACG 60.798 66.667 9.42 16.93 43.93 4.35
9366 15594 2.429739 GGACGACGACCGGTTCAC 60.430 66.667 9.42 1.82 43.93 3.18
9367 15595 2.595463 AGGACGACGACCGGTTCA 60.595 61.111 9.42 0.00 43.93 3.18
9368 15596 2.177778 GAGGACGACGACCGGTTC 59.822 66.667 9.42 1.38 43.93 3.62
9369 15597 3.730761 CGAGGACGACGACCGGTT 61.731 66.667 9.42 0.00 43.93 4.44
9372 15600 3.996744 GAAGCGAGGACGACGACCG 62.997 68.421 10.64 1.49 42.66 4.79
9373 15601 2.202453 GAAGCGAGGACGACGACC 60.202 66.667 8.37 8.37 42.66 4.79
9374 15602 2.202453 GGAAGCGAGGACGACGAC 60.202 66.667 0.00 0.00 42.66 4.34
9375 15603 3.437795 GGGAAGCGAGGACGACGA 61.438 66.667 0.00 0.00 42.66 4.20
9376 15604 3.744719 TGGGAAGCGAGGACGACG 61.745 66.667 0.00 0.00 42.66 5.12
9377 15605 2.126031 GTGGGAAGCGAGGACGAC 60.126 66.667 0.00 0.00 42.66 4.34
9378 15606 2.282958 AGTGGGAAGCGAGGACGA 60.283 61.111 0.00 0.00 42.66 4.20
9379 15607 2.182030 GAGTGGGAAGCGAGGACG 59.818 66.667 0.00 0.00 42.93 4.79
9380 15608 2.579738 GGAGTGGGAAGCGAGGAC 59.420 66.667 0.00 0.00 0.00 3.85
9381 15609 3.068691 CGGAGTGGGAAGCGAGGA 61.069 66.667 0.00 0.00 0.00 3.71
9382 15610 4.148825 CCGGAGTGGGAAGCGAGG 62.149 72.222 0.00 0.00 0.00 4.63
9383 15611 4.821589 GCCGGAGTGGGAAGCGAG 62.822 72.222 5.05 0.00 38.63 5.03
9391 15619 4.787280 AGAGAGGGGCCGGAGTGG 62.787 72.222 5.05 0.00 42.50 4.00
9392 15620 3.465403 CAGAGAGGGGCCGGAGTG 61.465 72.222 5.05 0.00 0.00 3.51
9401 15629 3.984186 TTCGAGGGGGCAGAGAGGG 62.984 68.421 0.00 0.00 0.00 4.30
9402 15630 1.965754 CTTTCGAGGGGGCAGAGAGG 61.966 65.000 0.00 0.00 0.00 3.69
9403 15631 1.519719 CTTTCGAGGGGGCAGAGAG 59.480 63.158 0.00 0.00 0.00 3.20
9404 15632 2.660064 GCTTTCGAGGGGGCAGAGA 61.660 63.158 0.00 0.00 0.00 3.10
9405 15633 2.124942 GCTTTCGAGGGGGCAGAG 60.125 66.667 0.00 0.00 0.00 3.35
9406 15634 3.717294 GGCTTTCGAGGGGGCAGA 61.717 66.667 0.00 0.00 0.00 4.26
9422 15650 3.242897 TAGGGTTTGGGCGTGTCGG 62.243 63.158 0.00 0.00 0.00 4.79
9423 15651 1.740296 CTAGGGTTTGGGCGTGTCG 60.740 63.158 0.00 0.00 0.00 4.35
9424 15652 2.038837 GCTAGGGTTTGGGCGTGTC 61.039 63.158 0.00 0.00 0.00 3.67
9425 15653 2.033602 GCTAGGGTTTGGGCGTGT 59.966 61.111 0.00 0.00 0.00 4.49
9426 15654 2.750237 GGCTAGGGTTTGGGCGTG 60.750 66.667 0.00 0.00 0.00 5.34
9427 15655 3.253838 TGGCTAGGGTTTGGGCGT 61.254 61.111 0.00 0.00 0.00 5.68
9428 15656 2.750237 GTGGCTAGGGTTTGGGCG 60.750 66.667 0.00 0.00 0.00 6.13
9429 15657 1.378646 GAGTGGCTAGGGTTTGGGC 60.379 63.158 0.00 0.00 0.00 5.36
9430 15658 1.303282 GGAGTGGCTAGGGTTTGGG 59.697 63.158 0.00 0.00 0.00 4.12
9431 15659 1.303282 GGGAGTGGCTAGGGTTTGG 59.697 63.158 0.00 0.00 0.00 3.28
9432 15660 1.303282 GGGGAGTGGCTAGGGTTTG 59.697 63.158 0.00 0.00 0.00 2.93
9433 15661 2.298661 CGGGGAGTGGCTAGGGTTT 61.299 63.158 0.00 0.00 0.00 3.27
9434 15662 2.687566 CGGGGAGTGGCTAGGGTT 60.688 66.667 0.00 0.00 0.00 4.11
9435 15663 3.978410 GACGGGGAGTGGCTAGGGT 62.978 68.421 0.00 0.00 0.00 4.34
9436 15664 3.155167 GACGGGGAGTGGCTAGGG 61.155 72.222 0.00 0.00 0.00 3.53
9437 15665 3.155167 GGACGGGGAGTGGCTAGG 61.155 72.222 0.00 0.00 0.00 3.02
9438 15666 1.686110 AAGGACGGGGAGTGGCTAG 60.686 63.158 0.00 0.00 0.00 3.42
9439 15667 1.987855 CAAGGACGGGGAGTGGCTA 60.988 63.158 0.00 0.00 0.00 3.93
9440 15668 3.322466 CAAGGACGGGGAGTGGCT 61.322 66.667 0.00 0.00 0.00 4.75
9441 15669 2.890766 TTCAAGGACGGGGAGTGGC 61.891 63.158 0.00 0.00 0.00 5.01
9442 15670 1.003718 GTTCAAGGACGGGGAGTGG 60.004 63.158 0.00 0.00 0.00 4.00
9443 15671 0.037232 GAGTTCAAGGACGGGGAGTG 60.037 60.000 0.00 0.00 0.00 3.51
9444 15672 1.533469 CGAGTTCAAGGACGGGGAGT 61.533 60.000 0.00 0.00 0.00 3.85
9445 15673 1.215647 CGAGTTCAAGGACGGGGAG 59.784 63.158 0.00 0.00 0.00 4.30
9446 15674 2.939261 GCGAGTTCAAGGACGGGGA 61.939 63.158 0.00 0.00 0.00 4.81
9447 15675 2.434359 GCGAGTTCAAGGACGGGG 60.434 66.667 0.00 0.00 0.00 5.73
9448 15676 2.434359 GGCGAGTTCAAGGACGGG 60.434 66.667 0.00 0.00 0.00 5.28
9449 15677 2.809601 CGGCGAGTTCAAGGACGG 60.810 66.667 0.00 0.00 0.00 4.79
9450 15678 2.809601 CCGGCGAGTTCAAGGACG 60.810 66.667 9.30 0.00 0.00 4.79
9451 15679 3.119096 GCCGGCGAGTTCAAGGAC 61.119 66.667 12.58 0.00 0.00 3.85
9452 15680 4.388499 GGCCGGCGAGTTCAAGGA 62.388 66.667 22.54 0.00 0.00 3.36
9478 15706 1.270839 CGTAGTTCCATAGCCCCATGG 60.271 57.143 4.14 4.14 45.93 3.66
9479 15707 1.270839 CCGTAGTTCCATAGCCCCATG 60.271 57.143 0.00 0.00 0.00 3.66
9480 15708 1.056660 CCGTAGTTCCATAGCCCCAT 58.943 55.000 0.00 0.00 0.00 4.00
9481 15709 1.692173 GCCGTAGTTCCATAGCCCCA 61.692 60.000 0.00 0.00 0.00 4.96
9482 15710 1.070957 GCCGTAGTTCCATAGCCCC 59.929 63.158 0.00 0.00 0.00 5.80
9483 15711 1.070957 GGCCGTAGTTCCATAGCCC 59.929 63.158 0.00 0.00 34.23 5.19
9484 15712 1.300697 CGGCCGTAGTTCCATAGCC 60.301 63.158 19.50 0.00 37.03 3.93
9485 15713 1.954651 GCGGCCGTAGTTCCATAGC 60.955 63.158 28.70 0.15 0.00 2.97
9486 15714 0.179094 TTGCGGCCGTAGTTCCATAG 60.179 55.000 28.70 0.00 0.00 2.23
9487 15715 0.179094 CTTGCGGCCGTAGTTCCATA 60.179 55.000 28.70 3.89 0.00 2.74
9488 15716 1.449601 CTTGCGGCCGTAGTTCCAT 60.450 57.895 28.70 0.00 0.00 3.41
9489 15717 2.047655 CTTGCGGCCGTAGTTCCA 60.048 61.111 28.70 12.30 0.00 3.53
9490 15718 2.818274 CCTTGCGGCCGTAGTTCC 60.818 66.667 28.70 9.35 0.00 3.62
9491 15719 2.818274 CCCTTGCGGCCGTAGTTC 60.818 66.667 28.70 10.19 0.00 3.01
9492 15720 4.404098 CCCCTTGCGGCCGTAGTT 62.404 66.667 28.70 0.00 0.00 2.24
9494 15722 4.090588 TTCCCCTTGCGGCCGTAG 62.091 66.667 28.70 22.92 0.00 3.51
9495 15723 4.090588 CTTCCCCTTGCGGCCGTA 62.091 66.667 28.70 21.83 0.00 4.02
9500 15728 4.697756 TCGTGCTTCCCCTTGCGG 62.698 66.667 0.00 0.00 0.00 5.69
9501 15729 3.423154 GTCGTGCTTCCCCTTGCG 61.423 66.667 0.00 0.00 0.00 4.85
9502 15730 3.056328 GGTCGTGCTTCCCCTTGC 61.056 66.667 0.00 0.00 0.00 4.01
9503 15731 2.742372 CGGTCGTGCTTCCCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
9504 15732 4.699522 GCGGTCGTGCTTCCCCTT 62.700 66.667 0.00 0.00 0.00 3.95
9509 15737 4.415332 TCCTCGCGGTCGTGCTTC 62.415 66.667 6.13 0.00 36.96 3.86
9510 15738 4.719369 GTCCTCGCGGTCGTGCTT 62.719 66.667 6.13 0.00 36.96 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.