Multiple sequence alignment - TraesCS3D01G202900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G202900 chr3D 100.000 5274 0 0 1 5274 250337356 250332083 0.000000e+00 9740.0
1 TraesCS3D01G202900 chr3D 97.333 300 8 0 4967 5266 256147989 256148288 1.310000e-140 510.0
2 TraesCS3D01G202900 chr3D 87.500 72 4 5 4867 4935 300770365 300770434 1.570000e-10 78.7
3 TraesCS3D01G202900 chr6D 98.049 4972 81 7 1 4970 448387202 448382245 0.000000e+00 8630.0
4 TraesCS3D01G202900 chr5A 97.319 3581 66 13 1 3580 447315581 447312030 0.000000e+00 6054.0
5 TraesCS3D01G202900 chr5A 97.041 2298 38 7 1710 4006 447313899 447311631 0.000000e+00 3840.0
6 TraesCS3D01G202900 chr5A 94.937 632 10 6 4066 4697 447311532 447310923 0.000000e+00 970.0
7 TraesCS3D01G202900 chr5A 83.023 483 46 23 3092 3551 362401223 362400754 6.360000e-109 405.0
8 TraesCS3D01G202900 chr5A 83.526 346 51 4 3858 4199 362400488 362400145 8.520000e-83 318.0
9 TraesCS3D01G202900 chr5A 92.105 152 9 3 3634 3785 362400754 362400606 1.490000e-50 211.0
10 TraesCS3D01G202900 chr5A 97.222 72 2 0 3954 4025 447311530 447311601 7.170000e-24 122.0
11 TraesCS3D01G202900 chr6B 97.596 2995 62 7 1977 4967 719415049 719412061 0.000000e+00 5123.0
12 TraesCS3D01G202900 chr6B 98.151 2272 39 3 1538 3808 192914118 192916387 0.000000e+00 3960.0
13 TraesCS3D01G202900 chr6B 96.834 1990 44 5 1 1988 719417853 719415881 0.000000e+00 3308.0
14 TraesCS3D01G202900 chr6B 96.747 1291 31 7 1 1289 192901829 192903110 0.000000e+00 2141.0
15 TraesCS3D01G202900 chr6B 97.082 1165 29 3 3804 4968 192922206 192923365 0.000000e+00 1958.0
16 TraesCS3D01G202900 chr6B 97.315 298 8 0 4967 5264 393758038 393757741 1.690000e-139 507.0
17 TraesCS3D01G202900 chr6B 81.096 529 48 29 3045 3551 24725777 24726275 4.990000e-100 375.0
18 TraesCS3D01G202900 chr6B 97.500 200 4 1 1319 1517 192903107 192903306 1.820000e-89 340.0
19 TraesCS3D01G202900 chr6B 83.815 346 50 4 3858 4199 24726541 24726884 1.830000e-84 324.0
20 TraesCS3D01G202900 chr6B 91.447 152 10 3 3634 3785 24726275 24726423 6.920000e-49 206.0
21 TraesCS3D01G202900 chr6B 89.062 128 9 3 3565 3687 45011745 45011618 2.540000e-33 154.0
22 TraesCS3D01G202900 chr6B 100.000 33 0 0 1514 1546 192913945 192913977 1.590000e-05 62.1
23 TraesCS3D01G202900 chr3A 96.811 2728 61 4 2241 4967 40336394 40333692 0.000000e+00 4532.0
24 TraesCS3D01G202900 chr3A 97.884 898 19 0 779 1676 40346328 40345431 0.000000e+00 1554.0
25 TraesCS3D01G202900 chr3A 98.134 536 10 0 1710 2245 40345427 40344892 0.000000e+00 935.0
26 TraesCS3D01G202900 chr3A 97.163 423 11 1 361 782 40348216 40347794 0.000000e+00 713.0
27 TraesCS3D01G202900 chr3A 95.862 435 9 6 1 426 40348648 40348214 0.000000e+00 695.0
28 TraesCS3D01G202900 chr3A 80.808 99 10 8 4875 4968 434621313 434621219 9.480000e-08 69.4
29 TraesCS3D01G202900 chr2A 96.894 1932 58 2 1 1930 611730252 611728321 0.000000e+00 3234.0
30 TraesCS3D01G202900 chr2A 83.610 482 44 23 3092 3551 32807457 32806989 2.270000e-113 420.0
31 TraesCS3D01G202900 chr2A 86.111 288 39 1 271 557 667021700 667021413 5.130000e-80 309.0
32 TraesCS3D01G202900 chr2A 88.889 99 11 0 3838 3936 759819852 759819950 7.170000e-24 122.0
33 TraesCS3D01G202900 chr2A 100.000 34 0 0 3045 3078 32807487 32807454 4.410000e-06 63.9
34 TraesCS3D01G202900 chr7D 98.113 1431 25 1 3538 4968 616704690 616706118 0.000000e+00 2492.0
35 TraesCS3D01G202900 chr7D 90.584 308 25 4 2548 2852 583282417 583282111 6.360000e-109 405.0
36 TraesCS3D01G202900 chr7D 80.907 529 49 32 3045 3551 565534335 565533837 2.320000e-98 370.0
37 TraesCS3D01G202900 chr7D 82.059 340 55 6 3864 4199 565533537 565533200 8.640000e-73 285.0
38 TraesCS3D01G202900 chr7D 93.421 152 7 3 3634 3785 565533837 565533689 6.870000e-54 222.0
39 TraesCS3D01G202900 chr4B 92.777 443 29 2 4397 4839 240172968 240172529 5.760000e-179 638.0
40 TraesCS3D01G202900 chr4B 97.333 300 8 0 4967 5266 414456107 414456406 1.310000e-140 510.0
41 TraesCS3D01G202900 chr4B 92.381 105 7 1 4840 4944 240148089 240147986 1.180000e-31 148.0
42 TraesCS3D01G202900 chr2D 82.044 685 92 23 4304 4967 343096862 343096188 5.970000e-154 555.0
43 TraesCS3D01G202900 chr2D 83.813 278 23 13 3045 3321 147127325 147127069 1.470000e-60 244.0
44 TraesCS3D01G202900 chr2D 80.899 89 16 1 4884 4972 44534643 44534556 9.480000e-08 69.4
45 TraesCS3D01G202900 chr6A 98.667 300 4 0 4967 5266 388056700 388056401 2.800000e-147 532.0
46 TraesCS3D01G202900 chr5B 98.333 300 5 0 4967 5266 139740796 139740497 1.300000e-145 527.0
47 TraesCS3D01G202900 chr2B 97.000 300 9 0 4967 5266 220358939 220358640 6.100000e-139 505.0
48 TraesCS3D01G202900 chr2B 97.000 300 7 1 4967 5266 421424522 421424819 2.190000e-138 503.0
49 TraesCS3D01G202900 chr7A 97.000 300 8 1 4967 5266 308452520 308452222 2.190000e-138 503.0
50 TraesCS3D01G202900 chr1B 96.333 300 11 0 4967 5266 192692762 192693061 1.320000e-135 494.0
51 TraesCS3D01G202900 chr1B 83.540 322 44 8 3093 3410 624665295 624664979 5.170000e-75 292.0
52 TraesCS3D01G202900 chr7B 87.279 283 35 1 271 552 113917018 113917300 6.590000e-84 322.0
53 TraesCS3D01G202900 chr1D 84.161 322 42 8 3093 3410 454169360 454169044 2.390000e-78 303.0
54 TraesCS3D01G202900 chr1A 81.303 353 55 9 4331 4677 477054784 477055131 5.200000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G202900 chr3D 250332083 250337356 5273 True 9740.000000 9740 100.000000 1 5274 1 chr3D.!!$R1 5273
1 TraesCS3D01G202900 chr6D 448382245 448387202 4957 True 8630.000000 8630 98.049000 1 4970 1 chr6D.!!$R1 4969
2 TraesCS3D01G202900 chr5A 447310923 447315581 4658 True 3621.333333 6054 96.432333 1 4697 3 chr5A.!!$R2 4696
3 TraesCS3D01G202900 chr5A 362400145 362401223 1078 True 311.333333 405 86.218000 3092 4199 3 chr5A.!!$R1 1107
4 TraesCS3D01G202900 chr6B 719412061 719417853 5792 True 4215.500000 5123 97.215000 1 4967 2 chr6B.!!$R3 4966
5 TraesCS3D01G202900 chr6B 192913945 192916387 2442 False 2011.050000 3960 99.075500 1514 3808 2 chr6B.!!$F4 2294
6 TraesCS3D01G202900 chr6B 192922206 192923365 1159 False 1958.000000 1958 97.082000 3804 4968 1 chr6B.!!$F1 1164
7 TraesCS3D01G202900 chr6B 192901829 192903306 1477 False 1240.500000 2141 97.123500 1 1517 2 chr6B.!!$F3 1516
8 TraesCS3D01G202900 chr6B 24725777 24726884 1107 False 301.666667 375 85.452667 3045 4199 3 chr6B.!!$F2 1154
9 TraesCS3D01G202900 chr3A 40333692 40336394 2702 True 4532.000000 4532 96.811000 2241 4967 1 chr3A.!!$R1 2726
10 TraesCS3D01G202900 chr3A 40344892 40348648 3756 True 974.250000 1554 97.260750 1 2245 4 chr3A.!!$R3 2244
11 TraesCS3D01G202900 chr2A 611728321 611730252 1931 True 3234.000000 3234 96.894000 1 1930 1 chr2A.!!$R1 1929
12 TraesCS3D01G202900 chr7D 616704690 616706118 1428 False 2492.000000 2492 98.113000 3538 4968 1 chr7D.!!$F1 1430
13 TraesCS3D01G202900 chr7D 565533200 565534335 1135 True 292.333333 370 85.462333 3045 4199 3 chr7D.!!$R2 1154
14 TraesCS3D01G202900 chr2D 343096188 343096862 674 True 555.000000 555 82.044000 4304 4967 1 chr2D.!!$R3 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 557 1.138266 GTCCTGCAGGTTAGCCGATTA 59.862 52.381 31.58 5.96 40.5 1.75 F
1289 2836 1.312815 GTCTTTGCAGTGCCTTGACT 58.687 50.000 13.72 0.00 0.0 3.41 F
2880 5491 2.413796 TGTTTGCAAGTTATAGACGCCG 59.586 45.455 0.00 0.00 0.0 6.46 F
2995 5606 0.036952 CAGGATGGACTGCTTCGTGT 60.037 55.000 0.00 0.00 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1291 2838 0.039035 ACGGGAGGCCAATTTTGCTA 59.961 50.000 5.01 0.0 0.00 3.49 R
2943 5554 1.996898 CCGTATCGTTTAAGCAGCACA 59.003 47.619 0.00 0.0 0.00 4.57 R
3815 6507 1.837439 TGTAAGGGTAGGAGCACCATG 59.163 52.381 2.07 0.0 40.65 3.66 R
4974 7802 0.179018 GCCCCGATGGTGCTATCTTT 60.179 55.000 0.00 0.0 36.04 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
325 335 3.686016 TCTGGAACATTTAGGAGGTTGC 58.314 45.455 0.00 0.00 38.20 4.17
484 557 1.138266 GTCCTGCAGGTTAGCCGATTA 59.862 52.381 31.58 5.96 40.50 1.75
664 737 5.972107 CAAGGTGAATCTTGTTTCCTGAT 57.028 39.130 0.00 0.00 39.27 2.90
855 2399 7.362056 GCTTCTGAATAATTGGTTGCAGAGTTA 60.362 37.037 0.00 0.00 34.33 2.24
1057 2603 6.723298 TTGTTGACCCAAAAATCACACTAT 57.277 33.333 0.00 0.00 0.00 2.12
1077 2623 7.445402 ACACTATACTGTTGCAATTTCTCTGTT 59.555 33.333 0.59 0.00 0.00 3.16
1289 2836 1.312815 GTCTTTGCAGTGCCTTGACT 58.687 50.000 13.72 0.00 0.00 3.41
1291 2838 3.077359 GTCTTTGCAGTGCCTTGACTAT 58.923 45.455 13.72 0.00 0.00 2.12
1398 3011 9.932207 TTTGAGAAATTCGTTGGATAAGTACTA 57.068 29.630 0.00 0.00 0.00 1.82
1745 3512 7.004086 AGTGTATTCTGTTTCTTTCATGGGAA 58.996 34.615 0.00 0.00 0.00 3.97
1861 3628 5.776744 AGAATTTGGAATGAAGTGCTTGAC 58.223 37.500 0.00 0.00 0.00 3.18
1889 3656 6.987403 AATCCCTAAGCAAAACTTTGGTAA 57.013 33.333 7.27 0.00 46.98 2.85
1942 3709 8.722394 TGATGTATTGCAAATTTTCGTACTACA 58.278 29.630 1.71 3.89 0.00 2.74
2002 4613 7.544217 GGTTGTGTTAGTTGACTTTGTTGAAAT 59.456 33.333 0.00 0.00 0.00 2.17
2045 4656 4.397417 AGCTGGCATGTTCTCTTAATCAAC 59.603 41.667 0.00 0.00 0.00 3.18
2329 4940 8.829612 CATATGTGATGTGTGTTTAGCTTATCA 58.170 33.333 0.00 0.00 0.00 2.15
2528 5139 5.422012 ACTTTCTTGTTGAGTTTGGTTGGAT 59.578 36.000 0.00 0.00 0.00 3.41
2652 5263 9.897744 CAGAGTTTGAATTTGCTTTTGTATAGA 57.102 29.630 0.00 0.00 0.00 1.98
2880 5491 2.413796 TGTTTGCAAGTTATAGACGCCG 59.586 45.455 0.00 0.00 0.00 6.46
2943 5554 1.267806 CATGACCTTGCAAACTCGCTT 59.732 47.619 0.00 0.00 0.00 4.68
2995 5606 0.036952 CAGGATGGACTGCTTCGTGT 60.037 55.000 0.00 0.00 0.00 4.49
3393 6011 3.653539 TGTGCGTACTGCTTCTAGAAA 57.346 42.857 6.63 0.00 46.63 2.52
3522 6157 5.970501 AATCCCTCTCTAAATTAACCCGT 57.029 39.130 0.00 0.00 0.00 5.28
3815 6507 1.005156 GCTGAGGATGGGCTCGATC 60.005 63.158 0.00 0.00 0.00 3.69
3994 6744 5.989477 TGGTGAGATTTTAGGTGTATCCAG 58.011 41.667 0.00 0.00 39.02 3.86
4462 7254 0.530211 ACAGCTCTCTCATGATGCGC 60.530 55.000 0.00 0.00 0.00 6.09
4463 7255 0.529992 CAGCTCTCTCATGATGCGCA 60.530 55.000 14.96 14.96 0.00 6.09
4577 7390 0.464373 CAGCCAATGGTACTGCCGAT 60.464 55.000 0.00 0.00 41.21 4.18
4588 7401 1.109920 ACTGCCGATATGAGGACGCT 61.110 55.000 0.00 0.00 0.00 5.07
4661 7474 4.376340 ACGGGCATCTGATTTTGATTTC 57.624 40.909 0.00 0.00 0.00 2.17
4765 7586 7.437713 ACTTGTGTCCTGATTAATGGATCTA 57.562 36.000 0.00 0.00 34.58 1.98
4970 7798 1.100510 TGCCGCAACGACTAGTAGAT 58.899 50.000 10.22 0.00 0.00 1.98
4971 7799 2.032550 GTGCCGCAACGACTAGTAGATA 59.967 50.000 10.22 0.00 0.00 1.98
4972 7800 2.882761 TGCCGCAACGACTAGTAGATAT 59.117 45.455 10.22 0.00 0.00 1.63
4973 7801 3.317149 TGCCGCAACGACTAGTAGATATT 59.683 43.478 10.22 0.00 0.00 1.28
4974 7802 4.516321 TGCCGCAACGACTAGTAGATATTA 59.484 41.667 10.22 0.00 0.00 0.98
4975 7803 5.008911 TGCCGCAACGACTAGTAGATATTAA 59.991 40.000 10.22 0.00 0.00 1.40
4976 7804 5.916883 GCCGCAACGACTAGTAGATATTAAA 59.083 40.000 10.22 0.00 0.00 1.52
4977 7805 6.087820 GCCGCAACGACTAGTAGATATTAAAG 59.912 42.308 10.22 0.00 0.00 1.85
4978 7806 7.358066 CCGCAACGACTAGTAGATATTAAAGA 58.642 38.462 10.22 0.00 0.00 2.52
4979 7807 8.021973 CCGCAACGACTAGTAGATATTAAAGAT 58.978 37.037 10.22 0.00 0.00 2.40
4985 7813 9.991388 CGACTAGTAGATATTAAAGATAGCACC 57.009 37.037 3.59 0.00 0.00 5.01
4990 7818 8.470805 AGTAGATATTAAAGATAGCACCATCGG 58.529 37.037 0.00 0.00 0.00 4.18
4991 7819 6.644347 AGATATTAAAGATAGCACCATCGGG 58.356 40.000 0.00 0.00 41.29 5.14
4992 7820 3.485463 TTAAAGATAGCACCATCGGGG 57.515 47.619 0.00 0.00 44.81 5.73
4999 7827 2.044053 CACCATCGGGGCCAATGT 60.044 61.111 4.39 0.00 42.05 2.71
5000 7828 1.225983 CACCATCGGGGCCAATGTA 59.774 57.895 4.39 0.00 42.05 2.29
5001 7829 1.101049 CACCATCGGGGCCAATGTAC 61.101 60.000 4.39 0.00 42.05 2.90
5002 7830 1.279025 ACCATCGGGGCCAATGTACT 61.279 55.000 4.39 0.00 42.05 2.73
5003 7831 0.762418 CCATCGGGGCCAATGTACTA 59.238 55.000 4.39 0.00 0.00 1.82
5004 7832 1.351017 CCATCGGGGCCAATGTACTAT 59.649 52.381 4.39 0.00 0.00 2.12
5005 7833 2.615493 CCATCGGGGCCAATGTACTATC 60.615 54.545 4.39 0.00 0.00 2.08
5006 7834 2.097110 TCGGGGCCAATGTACTATCT 57.903 50.000 4.39 0.00 0.00 1.98
5007 7835 3.247948 TCGGGGCCAATGTACTATCTA 57.752 47.619 4.39 0.00 0.00 1.98
5008 7836 3.578978 TCGGGGCCAATGTACTATCTAA 58.421 45.455 4.39 0.00 0.00 2.10
5009 7837 3.968649 TCGGGGCCAATGTACTATCTAAA 59.031 43.478 4.39 0.00 0.00 1.85
5010 7838 4.409574 TCGGGGCCAATGTACTATCTAAAA 59.590 41.667 4.39 0.00 0.00 1.52
5011 7839 4.755123 CGGGGCCAATGTACTATCTAAAAG 59.245 45.833 4.39 0.00 0.00 2.27
5012 7840 5.686650 CGGGGCCAATGTACTATCTAAAAGT 60.687 44.000 4.39 0.00 0.00 2.66
5013 7841 5.531287 GGGGCCAATGTACTATCTAAAAGTG 59.469 44.000 4.39 0.00 0.00 3.16
5014 7842 5.008712 GGGCCAATGTACTATCTAAAAGTGC 59.991 44.000 4.39 0.00 0.00 4.40
5015 7843 5.588648 GGCCAATGTACTATCTAAAAGTGCA 59.411 40.000 0.00 0.00 42.53 4.57
5016 7844 6.458342 GGCCAATGTACTATCTAAAAGTGCAC 60.458 42.308 9.40 9.40 41.41 4.57
5017 7845 6.316390 GCCAATGTACTATCTAAAAGTGCACT 59.684 38.462 15.25 15.25 41.41 4.40
5018 7846 7.677276 GCCAATGTACTATCTAAAAGTGCACTG 60.677 40.741 22.49 7.96 41.41 3.66
5019 7847 7.549134 CCAATGTACTATCTAAAAGTGCACTGA 59.451 37.037 22.49 13.79 38.52 3.41
5020 7848 9.102757 CAATGTACTATCTAAAAGTGCACTGAT 57.897 33.333 22.49 19.86 38.52 2.90
5021 7849 8.654230 ATGTACTATCTAAAAGTGCACTGATG 57.346 34.615 22.49 14.27 41.41 3.07
5035 7863 5.914085 GCACTGATGCCTAGTATGTAAAG 57.086 43.478 0.00 0.00 46.97 1.85
5036 7864 5.360591 GCACTGATGCCTAGTATGTAAAGT 58.639 41.667 0.00 0.00 46.97 2.66
5037 7865 5.817816 GCACTGATGCCTAGTATGTAAAGTT 59.182 40.000 0.00 0.00 46.97 2.66
5038 7866 6.984474 GCACTGATGCCTAGTATGTAAAGTTA 59.016 38.462 0.00 0.00 46.97 2.24
5039 7867 7.042658 GCACTGATGCCTAGTATGTAAAGTTAC 60.043 40.741 0.00 0.00 46.97 2.50
5040 7868 7.438459 CACTGATGCCTAGTATGTAAAGTTACC 59.562 40.741 0.00 0.00 32.72 2.85
5041 7869 7.344871 ACTGATGCCTAGTATGTAAAGTTACCT 59.655 37.037 0.00 0.00 32.72 3.08
5042 7870 8.771521 TGATGCCTAGTATGTAAAGTTACCTA 57.228 34.615 0.00 0.00 32.72 3.08
5043 7871 8.857098 TGATGCCTAGTATGTAAAGTTACCTAG 58.143 37.037 0.00 3.37 32.72 3.02
5044 7872 9.075678 GATGCCTAGTATGTAAAGTTACCTAGA 57.924 37.037 11.50 0.00 30.86 2.43
5045 7873 8.827832 TGCCTAGTATGTAAAGTTACCTAGAA 57.172 34.615 11.50 2.27 30.86 2.10
5046 7874 9.258629 TGCCTAGTATGTAAAGTTACCTAGAAA 57.741 33.333 11.50 0.00 30.86 2.52
5054 7882 8.897872 TGTAAAGTTACCTAGAAAAACTCCAG 57.102 34.615 0.00 0.00 32.42 3.86
5055 7883 6.879276 AAAGTTACCTAGAAAAACTCCAGC 57.121 37.500 0.00 0.00 32.42 4.85
5056 7884 5.562298 AGTTACCTAGAAAAACTCCAGCA 57.438 39.130 0.00 0.00 0.00 4.41
5057 7885 5.306394 AGTTACCTAGAAAAACTCCAGCAC 58.694 41.667 0.00 0.00 0.00 4.40
5058 7886 3.857157 ACCTAGAAAAACTCCAGCACA 57.143 42.857 0.00 0.00 0.00 4.57
5059 7887 4.373156 ACCTAGAAAAACTCCAGCACAT 57.627 40.909 0.00 0.00 0.00 3.21
5060 7888 4.074970 ACCTAGAAAAACTCCAGCACATG 58.925 43.478 0.00 0.00 0.00 3.21
5061 7889 4.202461 ACCTAGAAAAACTCCAGCACATGA 60.202 41.667 0.00 0.00 0.00 3.07
5062 7890 4.761739 CCTAGAAAAACTCCAGCACATGAA 59.238 41.667 0.00 0.00 0.00 2.57
5063 7891 5.241506 CCTAGAAAAACTCCAGCACATGAAA 59.758 40.000 0.00 0.00 0.00 2.69
5064 7892 5.192327 AGAAAAACTCCAGCACATGAAAG 57.808 39.130 0.00 0.00 0.00 2.62
5065 7893 4.038402 AGAAAAACTCCAGCACATGAAAGG 59.962 41.667 0.00 0.00 0.00 3.11
5066 7894 2.664402 AACTCCAGCACATGAAAGGT 57.336 45.000 0.00 0.00 0.00 3.50
5081 7909 7.209475 ACATGAAAGGTGTGACAAAATAAAGG 58.791 34.615 0.00 0.00 0.00 3.11
5082 7910 6.155475 TGAAAGGTGTGACAAAATAAAGGG 57.845 37.500 0.00 0.00 0.00 3.95
5083 7911 5.069781 TGAAAGGTGTGACAAAATAAAGGGG 59.930 40.000 0.00 0.00 0.00 4.79
5084 7912 4.463050 AGGTGTGACAAAATAAAGGGGA 57.537 40.909 0.00 0.00 0.00 4.81
5085 7913 4.810345 AGGTGTGACAAAATAAAGGGGAA 58.190 39.130 0.00 0.00 0.00 3.97
5086 7914 5.212745 AGGTGTGACAAAATAAAGGGGAAA 58.787 37.500 0.00 0.00 0.00 3.13
5087 7915 5.069914 AGGTGTGACAAAATAAAGGGGAAAC 59.930 40.000 0.00 0.00 0.00 2.78
5088 7916 5.163395 GGTGTGACAAAATAAAGGGGAAACA 60.163 40.000 0.00 0.00 0.00 2.83
5089 7917 6.342111 GTGTGACAAAATAAAGGGGAAACAA 58.658 36.000 0.00 0.00 0.00 2.83
5090 7918 6.256975 GTGTGACAAAATAAAGGGGAAACAAC 59.743 38.462 0.00 0.00 0.00 3.32
5091 7919 6.070767 TGTGACAAAATAAAGGGGAAACAACA 60.071 34.615 0.00 0.00 0.00 3.33
5092 7920 6.819146 GTGACAAAATAAAGGGGAAACAACAA 59.181 34.615 0.00 0.00 0.00 2.83
5093 7921 7.497579 GTGACAAAATAAAGGGGAAACAACAAT 59.502 33.333 0.00 0.00 0.00 2.71
5094 7922 7.713073 TGACAAAATAAAGGGGAAACAACAATC 59.287 33.333 0.00 0.00 0.00 2.67
5095 7923 6.995686 ACAAAATAAAGGGGAAACAACAATCC 59.004 34.615 0.00 0.00 34.85 3.01
5096 7924 7.147391 ACAAAATAAAGGGGAAACAACAATCCT 60.147 33.333 0.00 0.00 35.95 3.24
5097 7925 6.605471 AATAAAGGGGAAACAACAATCCTC 57.395 37.500 0.00 0.00 36.38 3.71
5098 7926 2.604912 AGGGGAAACAACAATCCTCC 57.395 50.000 0.00 0.00 36.84 4.30
5099 7927 2.073776 AGGGGAAACAACAATCCTCCT 58.926 47.619 0.00 0.00 36.84 3.69
5100 7928 2.041755 AGGGGAAACAACAATCCTCCTC 59.958 50.000 0.00 0.00 36.84 3.71
5101 7929 2.225017 GGGGAAACAACAATCCTCCTCA 60.225 50.000 0.00 0.00 35.95 3.86
5102 7930 3.496331 GGGAAACAACAATCCTCCTCAA 58.504 45.455 0.00 0.00 35.95 3.02
5103 7931 3.507622 GGGAAACAACAATCCTCCTCAAG 59.492 47.826 0.00 0.00 35.95 3.02
5104 7932 4.398319 GGAAACAACAATCCTCCTCAAGA 58.602 43.478 0.00 0.00 32.75 3.02
5105 7933 4.827284 GGAAACAACAATCCTCCTCAAGAA 59.173 41.667 0.00 0.00 32.75 2.52
5106 7934 5.301805 GGAAACAACAATCCTCCTCAAGAAA 59.698 40.000 0.00 0.00 32.75 2.52
5107 7935 6.015095 GGAAACAACAATCCTCCTCAAGAAAT 60.015 38.462 0.00 0.00 32.75 2.17
5108 7936 5.972107 ACAACAATCCTCCTCAAGAAATG 57.028 39.130 0.00 0.00 0.00 2.32
5109 7937 4.768968 ACAACAATCCTCCTCAAGAAATGG 59.231 41.667 0.00 0.00 0.00 3.16
5110 7938 4.664688 ACAATCCTCCTCAAGAAATGGT 57.335 40.909 0.00 0.00 0.00 3.55
5111 7939 4.338879 ACAATCCTCCTCAAGAAATGGTG 58.661 43.478 0.00 0.00 0.00 4.17
5112 7940 2.496899 TCCTCCTCAAGAAATGGTGC 57.503 50.000 0.00 0.00 0.00 5.01
5113 7941 1.988107 TCCTCCTCAAGAAATGGTGCT 59.012 47.619 0.00 0.00 0.00 4.40
5114 7942 2.089980 CCTCCTCAAGAAATGGTGCTG 58.910 52.381 0.00 0.00 0.00 4.41
5115 7943 2.290514 CCTCCTCAAGAAATGGTGCTGA 60.291 50.000 0.00 0.00 0.00 4.26
5116 7944 3.618351 CTCCTCAAGAAATGGTGCTGAT 58.382 45.455 0.00 0.00 0.00 2.90
5117 7945 4.384537 CCTCCTCAAGAAATGGTGCTGATA 60.385 45.833 0.00 0.00 0.00 2.15
5118 7946 4.774124 TCCTCAAGAAATGGTGCTGATAG 58.226 43.478 0.00 0.00 0.00 2.08
5119 7947 3.881688 CCTCAAGAAATGGTGCTGATAGG 59.118 47.826 0.00 0.00 0.00 2.57
5120 7948 3.282021 TCAAGAAATGGTGCTGATAGGC 58.718 45.455 0.00 0.00 0.00 3.93
5121 7949 3.018856 CAAGAAATGGTGCTGATAGGCA 58.981 45.455 0.00 0.00 40.15 4.75
5137 7965 6.899089 TGATAGGCAGACATATTCCTTTTCA 58.101 36.000 0.00 0.00 0.00 2.69
5138 7966 7.520798 TGATAGGCAGACATATTCCTTTTCAT 58.479 34.615 0.00 0.00 0.00 2.57
5139 7967 7.446319 TGATAGGCAGACATATTCCTTTTCATG 59.554 37.037 0.00 0.00 0.00 3.07
5140 7968 5.513233 AGGCAGACATATTCCTTTTCATGT 58.487 37.500 0.00 0.00 34.41 3.21
5141 7969 6.662755 AGGCAGACATATTCCTTTTCATGTA 58.337 36.000 0.00 0.00 31.94 2.29
5142 7970 6.543831 AGGCAGACATATTCCTTTTCATGTAC 59.456 38.462 0.00 0.00 31.94 2.90
5143 7971 6.543831 GGCAGACATATTCCTTTTCATGTACT 59.456 38.462 0.00 0.00 31.94 2.73
5144 7972 7.412853 GCAGACATATTCCTTTTCATGTACTG 58.587 38.462 0.00 0.00 33.95 2.74
5145 7973 7.066284 GCAGACATATTCCTTTTCATGTACTGT 59.934 37.037 0.00 0.00 33.69 3.55
5146 7974 8.393366 CAGACATATTCCTTTTCATGTACTGTG 58.607 37.037 0.00 0.00 31.94 3.66
5147 7975 7.554118 AGACATATTCCTTTTCATGTACTGTGG 59.446 37.037 0.00 0.00 31.94 4.17
5148 7976 7.175104 ACATATTCCTTTTCATGTACTGTGGT 58.825 34.615 0.00 0.00 30.04 4.16
5149 7977 5.964958 ATTCCTTTTCATGTACTGTGGTG 57.035 39.130 0.00 0.00 0.00 4.17
5150 7978 3.146066 TCCTTTTCATGTACTGTGGTGC 58.854 45.455 0.00 0.00 0.00 5.01
5151 7979 2.884012 CCTTTTCATGTACTGTGGTGCA 59.116 45.455 0.00 0.00 41.85 4.57
5152 7980 3.317711 CCTTTTCATGTACTGTGGTGCAA 59.682 43.478 0.00 0.00 41.06 4.08
5153 7981 4.539870 CTTTTCATGTACTGTGGTGCAAG 58.460 43.478 0.00 0.00 41.06 4.01
5154 7982 3.483808 TTCATGTACTGTGGTGCAAGA 57.516 42.857 0.00 0.00 41.06 3.02
5155 7983 3.044235 TCATGTACTGTGGTGCAAGAG 57.956 47.619 0.00 0.00 41.06 2.85
5156 7984 2.368548 TCATGTACTGTGGTGCAAGAGT 59.631 45.455 0.00 0.00 41.06 3.24
5157 7985 3.141398 CATGTACTGTGGTGCAAGAGTT 58.859 45.455 0.00 0.00 41.06 3.01
5158 7986 2.833794 TGTACTGTGGTGCAAGAGTTC 58.166 47.619 0.00 0.00 35.26 3.01
5159 7987 2.169561 TGTACTGTGGTGCAAGAGTTCA 59.830 45.455 0.00 0.00 35.26 3.18
5160 7988 1.959042 ACTGTGGTGCAAGAGTTCAG 58.041 50.000 0.00 0.00 0.00 3.02
5161 7989 1.486310 ACTGTGGTGCAAGAGTTCAGA 59.514 47.619 0.00 0.00 0.00 3.27
5162 7990 2.092968 ACTGTGGTGCAAGAGTTCAGAA 60.093 45.455 0.00 0.00 0.00 3.02
5163 7991 2.547211 CTGTGGTGCAAGAGTTCAGAAG 59.453 50.000 0.00 0.00 0.00 2.85
5164 7992 2.170397 TGTGGTGCAAGAGTTCAGAAGA 59.830 45.455 0.00 0.00 0.00 2.87
5165 7993 3.206150 GTGGTGCAAGAGTTCAGAAGAA 58.794 45.455 0.00 0.00 0.00 2.52
5166 7994 3.627577 GTGGTGCAAGAGTTCAGAAGAAA 59.372 43.478 0.00 0.00 35.08 2.52
5167 7995 4.276926 GTGGTGCAAGAGTTCAGAAGAAAT 59.723 41.667 0.00 0.00 35.08 2.17
5168 7996 4.516698 TGGTGCAAGAGTTCAGAAGAAATC 59.483 41.667 0.00 0.00 46.31 2.17
5175 8003 4.573900 GAGTTCAGAAGAAATCAGGCTCA 58.426 43.478 1.34 0.00 45.52 4.26
5176 8004 4.322567 AGTTCAGAAGAAATCAGGCTCAC 58.677 43.478 0.00 0.00 35.08 3.51
5177 8005 3.340814 TCAGAAGAAATCAGGCTCACC 57.659 47.619 0.00 0.00 0.00 4.02
5178 8006 4.805609 GTTCAGAAGAAATCAGGCTCACCT 60.806 45.833 0.00 0.00 40.80 4.00
5179 8007 5.569630 GTTCAGAAGAAATCAGGCTCACCTA 60.570 44.000 0.00 0.00 39.01 3.08
5180 8008 6.855065 GTTCAGAAGAAATCAGGCTCACCTAT 60.855 42.308 0.00 0.00 39.01 2.57
5181 8009 8.587745 GTTCAGAAGAAATCAGGCTCACCTATC 61.588 44.444 0.00 0.00 39.01 2.08
5189 8017 2.629336 GGCTCACCTATCTTGGAAGG 57.371 55.000 0.00 0.00 38.93 3.46
5190 8018 1.141858 GGCTCACCTATCTTGGAAGGG 59.858 57.143 0.00 0.00 37.18 3.95
5191 8019 1.840635 GCTCACCTATCTTGGAAGGGT 59.159 52.381 0.00 0.00 37.18 4.34
5192 8020 2.158885 GCTCACCTATCTTGGAAGGGTC 60.159 54.545 0.00 0.00 37.18 4.46
5193 8021 2.436173 CTCACCTATCTTGGAAGGGTCC 59.564 54.545 0.00 0.00 45.21 4.46
5201 8029 2.579738 GGAAGGGTCCGACTGCTC 59.420 66.667 0.00 0.00 33.05 4.26
5202 8030 1.985116 GGAAGGGTCCGACTGCTCT 60.985 63.158 0.00 0.00 33.05 4.09
5203 8031 0.683504 GGAAGGGTCCGACTGCTCTA 60.684 60.000 0.00 0.00 33.05 2.43
5204 8032 0.741915 GAAGGGTCCGACTGCTCTAG 59.258 60.000 0.00 0.00 0.00 2.43
5205 8033 0.039911 AAGGGTCCGACTGCTCTAGT 59.960 55.000 0.00 0.00 44.02 2.57
5206 8034 0.681564 AGGGTCCGACTGCTCTAGTG 60.682 60.000 0.00 0.00 40.53 2.74
5207 8035 0.680280 GGGTCCGACTGCTCTAGTGA 60.680 60.000 0.00 0.00 40.53 3.41
5208 8036 0.452585 GGTCCGACTGCTCTAGTGAC 59.547 60.000 0.00 0.00 40.53 3.67
5209 8037 1.166129 GTCCGACTGCTCTAGTGACA 58.834 55.000 0.00 0.00 40.53 3.58
5210 8038 1.746220 GTCCGACTGCTCTAGTGACAT 59.254 52.381 0.00 0.00 40.53 3.06
5211 8039 2.017782 TCCGACTGCTCTAGTGACATC 58.982 52.381 0.00 0.00 40.53 3.06
5212 8040 1.745653 CCGACTGCTCTAGTGACATCA 59.254 52.381 0.00 0.00 40.53 3.07
5213 8041 2.164422 CCGACTGCTCTAGTGACATCAA 59.836 50.000 0.00 0.00 40.53 2.57
5214 8042 3.433709 CGACTGCTCTAGTGACATCAAG 58.566 50.000 0.00 0.00 40.53 3.02
5215 8043 3.186119 GACTGCTCTAGTGACATCAAGC 58.814 50.000 0.00 0.00 40.53 4.01
5216 8044 2.093764 ACTGCTCTAGTGACATCAAGCC 60.094 50.000 0.00 0.00 38.49 4.35
5217 8045 1.901833 TGCTCTAGTGACATCAAGCCA 59.098 47.619 0.00 0.00 0.00 4.75
5218 8046 2.275318 GCTCTAGTGACATCAAGCCAC 58.725 52.381 0.00 0.00 0.00 5.01
5219 8047 2.354103 GCTCTAGTGACATCAAGCCACA 60.354 50.000 0.00 0.00 33.53 4.17
5220 8048 3.519579 CTCTAGTGACATCAAGCCACAG 58.480 50.000 0.00 0.00 33.53 3.66
5221 8049 2.899900 TCTAGTGACATCAAGCCACAGT 59.100 45.455 0.00 0.00 33.53 3.55
5222 8050 4.086457 TCTAGTGACATCAAGCCACAGTA 58.914 43.478 0.00 0.00 33.53 2.74
5223 8051 3.988976 AGTGACATCAAGCCACAGTAT 57.011 42.857 0.00 0.00 33.53 2.12
5224 8052 3.866651 AGTGACATCAAGCCACAGTATC 58.133 45.455 0.00 0.00 33.53 2.24
5225 8053 3.517100 AGTGACATCAAGCCACAGTATCT 59.483 43.478 0.00 0.00 33.53 1.98
5226 8054 3.868077 GTGACATCAAGCCACAGTATCTC 59.132 47.826 0.00 0.00 0.00 2.75
5227 8055 3.118629 TGACATCAAGCCACAGTATCTCC 60.119 47.826 0.00 0.00 0.00 3.71
5228 8056 2.159043 ACATCAAGCCACAGTATCTCCG 60.159 50.000 0.00 0.00 0.00 4.63
5229 8057 0.824109 TCAAGCCACAGTATCTCCGG 59.176 55.000 0.00 0.00 0.00 5.14
5230 8058 0.811616 CAAGCCACAGTATCTCCGGC 60.812 60.000 0.00 0.00 43.31 6.13
5231 8059 1.972660 AAGCCACAGTATCTCCGGCC 61.973 60.000 0.00 0.00 44.06 6.13
5232 8060 2.731571 GCCACAGTATCTCCGGCCA 61.732 63.158 2.24 0.00 36.73 5.36
5233 8061 1.144057 CCACAGTATCTCCGGCCAC 59.856 63.158 2.24 0.00 0.00 5.01
5234 8062 1.330655 CCACAGTATCTCCGGCCACT 61.331 60.000 2.24 0.00 0.00 4.00
5235 8063 0.103208 CACAGTATCTCCGGCCACTC 59.897 60.000 2.24 0.00 0.00 3.51
5236 8064 0.324368 ACAGTATCTCCGGCCACTCA 60.324 55.000 2.24 0.00 0.00 3.41
5237 8065 0.387202 CAGTATCTCCGGCCACTCAG 59.613 60.000 2.24 0.00 0.00 3.35
5238 8066 0.259065 AGTATCTCCGGCCACTCAGA 59.741 55.000 2.24 0.00 0.00 3.27
5239 8067 1.112113 GTATCTCCGGCCACTCAGAA 58.888 55.000 2.24 0.00 0.00 3.02
5240 8068 1.112113 TATCTCCGGCCACTCAGAAC 58.888 55.000 2.24 0.00 0.00 3.01
5241 8069 1.617947 ATCTCCGGCCACTCAGAACC 61.618 60.000 2.24 0.00 0.00 3.62
5242 8070 2.525629 TCCGGCCACTCAGAACCA 60.526 61.111 2.24 0.00 0.00 3.67
5243 8071 2.111999 CTCCGGCCACTCAGAACCAA 62.112 60.000 2.24 0.00 0.00 3.67
5244 8072 1.228124 CCGGCCACTCAGAACCAAA 60.228 57.895 2.24 0.00 0.00 3.28
5245 8073 0.821711 CCGGCCACTCAGAACCAAAA 60.822 55.000 2.24 0.00 0.00 2.44
5246 8074 0.310854 CGGCCACTCAGAACCAAAAC 59.689 55.000 2.24 0.00 0.00 2.43
5247 8075 1.398692 GGCCACTCAGAACCAAAACA 58.601 50.000 0.00 0.00 0.00 2.83
5248 8076 1.754226 GGCCACTCAGAACCAAAACAA 59.246 47.619 0.00 0.00 0.00 2.83
5249 8077 2.365293 GGCCACTCAGAACCAAAACAAT 59.635 45.455 0.00 0.00 0.00 2.71
5250 8078 3.572255 GGCCACTCAGAACCAAAACAATA 59.428 43.478 0.00 0.00 0.00 1.90
5251 8079 4.220602 GGCCACTCAGAACCAAAACAATAT 59.779 41.667 0.00 0.00 0.00 1.28
5252 8080 5.163513 GCCACTCAGAACCAAAACAATATG 58.836 41.667 0.00 0.00 0.00 1.78
5253 8081 5.163513 CCACTCAGAACCAAAACAATATGC 58.836 41.667 0.00 0.00 0.00 3.14
5254 8082 5.163513 CACTCAGAACCAAAACAATATGCC 58.836 41.667 0.00 0.00 0.00 4.40
5255 8083 4.220602 ACTCAGAACCAAAACAATATGCCC 59.779 41.667 0.00 0.00 0.00 5.36
5256 8084 4.415596 TCAGAACCAAAACAATATGCCCT 58.584 39.130 0.00 0.00 0.00 5.19
5257 8085 5.575157 TCAGAACCAAAACAATATGCCCTA 58.425 37.500 0.00 0.00 0.00 3.53
5258 8086 6.194235 TCAGAACCAAAACAATATGCCCTAT 58.806 36.000 0.00 0.00 0.00 2.57
5259 8087 6.321181 TCAGAACCAAAACAATATGCCCTATC 59.679 38.462 0.00 0.00 0.00 2.08
5260 8088 6.322201 CAGAACCAAAACAATATGCCCTATCT 59.678 38.462 0.00 0.00 0.00 1.98
5261 8089 6.897413 AGAACCAAAACAATATGCCCTATCTT 59.103 34.615 0.00 0.00 0.00 2.40
5262 8090 6.715347 ACCAAAACAATATGCCCTATCTTC 57.285 37.500 0.00 0.00 0.00 2.87
5263 8091 6.194235 ACCAAAACAATATGCCCTATCTTCA 58.806 36.000 0.00 0.00 0.00 3.02
5264 8092 6.322201 ACCAAAACAATATGCCCTATCTTCAG 59.678 38.462 0.00 0.00 0.00 3.02
5265 8093 6.322201 CCAAAACAATATGCCCTATCTTCAGT 59.678 38.462 0.00 0.00 0.00 3.41
5266 8094 7.502226 CCAAAACAATATGCCCTATCTTCAGTA 59.498 37.037 0.00 0.00 0.00 2.74
5267 8095 8.902806 CAAAACAATATGCCCTATCTTCAGTAA 58.097 33.333 0.00 0.00 0.00 2.24
5268 8096 9.474313 AAAACAATATGCCCTATCTTCAGTAAA 57.526 29.630 0.00 0.00 0.00 2.01
5269 8097 9.474313 AAACAATATGCCCTATCTTCAGTAAAA 57.526 29.630 0.00 0.00 0.00 1.52
5270 8098 8.451908 ACAATATGCCCTATCTTCAGTAAAAC 57.548 34.615 0.00 0.00 0.00 2.43
5271 8099 7.502561 ACAATATGCCCTATCTTCAGTAAAACC 59.497 37.037 0.00 0.00 0.00 3.27
5272 8100 4.230745 TGCCCTATCTTCAGTAAAACCC 57.769 45.455 0.00 0.00 0.00 4.11
5273 8101 3.053917 TGCCCTATCTTCAGTAAAACCCC 60.054 47.826 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
484 557 3.377573 AGGGCCAGCAATCAAATACATT 58.622 40.909 6.18 0.00 0.00 2.71
591 664 7.496529 TGTAGCCTGCTATTTCAATACAATC 57.503 36.000 1.65 0.00 0.00 2.67
797 2341 2.481449 GCTACGTGAGATACCCAACAGG 60.481 54.545 0.00 0.00 43.78 4.00
855 2399 3.513912 TGGAACTCCAAGACACATACGAT 59.486 43.478 0.00 0.00 44.35 3.73
1057 2603 6.691754 TTCAACAGAGAAATTGCAACAGTA 57.308 33.333 0.00 0.00 0.00 2.74
1077 2623 3.153369 TGGCTTCTGCATACCTTTTCA 57.847 42.857 0.00 0.00 41.91 2.69
1289 2836 2.092103 ACGGGAGGCCAATTTTGCTATA 60.092 45.455 5.01 0.00 0.00 1.31
1291 2838 0.039035 ACGGGAGGCCAATTTTGCTA 59.961 50.000 5.01 0.00 0.00 3.49
1398 3011 9.178758 CCTACTTTCTTAGAAAAGCACCATATT 57.821 33.333 8.82 0.00 39.39 1.28
1745 3512 6.658831 CAACAACGACTGTGTCTAATTGAAT 58.341 36.000 0.00 0.00 38.67 2.57
1861 3628 5.728637 AAGTTTTGCTTAGGGATTTCCAG 57.271 39.130 0.00 0.00 38.24 3.86
1889 3656 5.620206 TGTAACCGATATCCAATGAAGCAT 58.380 37.500 0.00 0.00 0.00 3.79
2680 5291 9.131791 ACAAATCAGAAGCTACTTTAGGAAAAA 57.868 29.630 0.00 0.00 0.00 1.94
2943 5554 1.996898 CCGTATCGTTTAAGCAGCACA 59.003 47.619 0.00 0.00 0.00 4.57
2995 5606 5.745312 TCAGGCAAAGAAGAGTGAATCTA 57.255 39.130 0.00 0.00 37.23 1.98
3522 6157 5.658634 AGAGTTGTCTACATAGCAATCTGGA 59.341 40.000 0.00 0.00 0.00 3.86
3815 6507 1.837439 TGTAAGGGTAGGAGCACCATG 59.163 52.381 2.07 0.00 40.65 3.66
4026 6776 2.041701 ACTGGGCAACAAAGAGCAAAT 58.958 42.857 0.00 0.00 39.74 2.32
4473 7265 4.631740 TCAGTCCCGCCACCCTCA 62.632 66.667 0.00 0.00 0.00 3.86
4588 7401 1.884075 CTCGATCAACACGGGGGTGA 61.884 60.000 0.00 0.00 0.00 4.02
4661 7474 4.999950 ACTTGTGAAAAGAGAGCACATAGG 59.000 41.667 0.00 0.00 41.60 2.57
4765 7586 9.091220 AGTTATTCAGTGACTTCTAACTACCTT 57.909 33.333 11.85 0.00 30.02 3.50
4970 7798 4.564821 GCCCCGATGGTGCTATCTTTAATA 60.565 45.833 0.00 0.00 36.04 0.98
4971 7799 3.810743 GCCCCGATGGTGCTATCTTTAAT 60.811 47.826 0.00 0.00 36.04 1.40
4972 7800 2.486548 GCCCCGATGGTGCTATCTTTAA 60.487 50.000 0.00 0.00 36.04 1.52
4973 7801 1.071699 GCCCCGATGGTGCTATCTTTA 59.928 52.381 0.00 0.00 36.04 1.85
4974 7802 0.179018 GCCCCGATGGTGCTATCTTT 60.179 55.000 0.00 0.00 36.04 2.52
4975 7803 1.451936 GCCCCGATGGTGCTATCTT 59.548 57.895 0.00 0.00 36.04 2.40
4976 7804 2.520536 GGCCCCGATGGTGCTATCT 61.521 63.158 0.00 0.00 36.04 1.98
4977 7805 2.032681 GGCCCCGATGGTGCTATC 59.967 66.667 0.00 0.00 36.04 2.08
4978 7806 1.719063 ATTGGCCCCGATGGTGCTAT 61.719 55.000 0.00 0.00 36.04 2.97
4979 7807 2.382770 ATTGGCCCCGATGGTGCTA 61.383 57.895 0.00 0.00 36.04 3.49
4980 7808 3.743017 ATTGGCCCCGATGGTGCT 61.743 61.111 0.00 0.00 36.04 4.40
4981 7809 2.902423 TACATTGGCCCCGATGGTGC 62.902 60.000 16.84 0.00 41.04 5.01
4982 7810 1.101049 GTACATTGGCCCCGATGGTG 61.101 60.000 16.84 0.00 41.04 4.17
4983 7811 1.226262 GTACATTGGCCCCGATGGT 59.774 57.895 16.84 7.03 41.04 3.55
4984 7812 0.762418 TAGTACATTGGCCCCGATGG 59.238 55.000 16.84 2.15 41.04 3.51
4985 7813 2.303022 AGATAGTACATTGGCCCCGATG 59.697 50.000 12.09 12.09 42.12 3.84
4986 7814 2.621070 AGATAGTACATTGGCCCCGAT 58.379 47.619 0.00 0.00 0.00 4.18
4987 7815 2.097110 AGATAGTACATTGGCCCCGA 57.903 50.000 0.00 0.00 0.00 5.14
4988 7816 4.345859 TTTAGATAGTACATTGGCCCCG 57.654 45.455 0.00 0.00 0.00 5.73
4989 7817 5.531287 CACTTTTAGATAGTACATTGGCCCC 59.469 44.000 0.00 0.00 0.00 5.80
4990 7818 5.008712 GCACTTTTAGATAGTACATTGGCCC 59.991 44.000 0.00 0.00 0.00 5.80
4991 7819 5.588648 TGCACTTTTAGATAGTACATTGGCC 59.411 40.000 0.00 0.00 0.00 5.36
4992 7820 6.316390 AGTGCACTTTTAGATAGTACATTGGC 59.684 38.462 15.25 0.00 0.00 4.52
4993 7821 7.549134 TCAGTGCACTTTTAGATAGTACATTGG 59.451 37.037 18.94 0.00 31.32 3.16
4994 7822 8.479313 TCAGTGCACTTTTAGATAGTACATTG 57.521 34.615 18.94 0.08 31.51 2.82
4995 7823 9.102757 CATCAGTGCACTTTTAGATAGTACATT 57.897 33.333 18.94 0.00 0.00 2.71
4996 7824 8.654230 CATCAGTGCACTTTTAGATAGTACAT 57.346 34.615 18.94 0.00 0.00 2.29
5013 7841 7.042658 GTAACTTTACATACTAGGCATCAGTGC 60.043 40.741 0.00 0.00 40.70 4.40
5014 7842 7.438459 GGTAACTTTACATACTAGGCATCAGTG 59.562 40.741 0.00 0.00 35.37 3.66
5015 7843 7.498443 GGTAACTTTACATACTAGGCATCAGT 58.502 38.462 0.00 0.00 35.37 3.41
5016 7844 7.948278 GGTAACTTTACATACTAGGCATCAG 57.052 40.000 0.00 0.00 35.37 2.90
5035 7863 5.061179 TGTGCTGGAGTTTTTCTAGGTAAC 58.939 41.667 0.00 0.00 35.11 2.50
5036 7864 5.298989 TGTGCTGGAGTTTTTCTAGGTAA 57.701 39.130 0.00 0.00 35.11 2.85
5037 7865 4.967084 TGTGCTGGAGTTTTTCTAGGTA 57.033 40.909 0.00 0.00 35.11 3.08
5038 7866 3.857157 TGTGCTGGAGTTTTTCTAGGT 57.143 42.857 0.00 0.00 35.11 3.08
5039 7867 4.326826 TCATGTGCTGGAGTTTTTCTAGG 58.673 43.478 0.00 0.00 35.11 3.02
5040 7868 5.947228 TTCATGTGCTGGAGTTTTTCTAG 57.053 39.130 0.00 0.00 37.45 2.43
5041 7869 5.241506 CCTTTCATGTGCTGGAGTTTTTCTA 59.758 40.000 0.00 0.00 0.00 2.10
5042 7870 4.038402 CCTTTCATGTGCTGGAGTTTTTCT 59.962 41.667 0.00 0.00 0.00 2.52
5043 7871 4.202151 ACCTTTCATGTGCTGGAGTTTTTC 60.202 41.667 0.00 0.00 0.00 2.29
5044 7872 3.706086 ACCTTTCATGTGCTGGAGTTTTT 59.294 39.130 0.00 0.00 0.00 1.94
5045 7873 3.068590 CACCTTTCATGTGCTGGAGTTTT 59.931 43.478 0.00 0.00 0.00 2.43
5046 7874 2.624838 CACCTTTCATGTGCTGGAGTTT 59.375 45.455 0.00 0.00 0.00 2.66
5047 7875 2.233271 CACCTTTCATGTGCTGGAGTT 58.767 47.619 0.00 0.00 0.00 3.01
5048 7876 1.143684 ACACCTTTCATGTGCTGGAGT 59.856 47.619 0.00 0.00 37.22 3.85
5049 7877 1.538512 CACACCTTTCATGTGCTGGAG 59.461 52.381 0.00 0.00 40.94 3.86
5050 7878 1.142667 TCACACCTTTCATGTGCTGGA 59.857 47.619 0.20 0.00 45.82 3.86
5051 7879 1.267806 GTCACACCTTTCATGTGCTGG 59.732 52.381 0.20 0.00 45.82 4.85
5052 7880 1.948834 TGTCACACCTTTCATGTGCTG 59.051 47.619 0.20 0.00 45.82 4.41
5053 7881 2.346766 TGTCACACCTTTCATGTGCT 57.653 45.000 0.20 0.00 45.82 4.40
5054 7882 3.435105 TTTGTCACACCTTTCATGTGC 57.565 42.857 0.20 0.00 45.82 4.57
5056 7884 7.209475 CCTTTATTTTGTCACACCTTTCATGT 58.791 34.615 0.00 0.00 0.00 3.21
5057 7885 6.646240 CCCTTTATTTTGTCACACCTTTCATG 59.354 38.462 0.00 0.00 0.00 3.07
5058 7886 6.239572 CCCCTTTATTTTGTCACACCTTTCAT 60.240 38.462 0.00 0.00 0.00 2.57
5059 7887 5.069781 CCCCTTTATTTTGTCACACCTTTCA 59.930 40.000 0.00 0.00 0.00 2.69
5060 7888 5.303333 TCCCCTTTATTTTGTCACACCTTTC 59.697 40.000 0.00 0.00 0.00 2.62
5061 7889 5.212745 TCCCCTTTATTTTGTCACACCTTT 58.787 37.500 0.00 0.00 0.00 3.11
5062 7890 4.810345 TCCCCTTTATTTTGTCACACCTT 58.190 39.130 0.00 0.00 0.00 3.50
5063 7891 4.463050 TCCCCTTTATTTTGTCACACCT 57.537 40.909 0.00 0.00 0.00 4.00
5064 7892 5.163395 TGTTTCCCCTTTATTTTGTCACACC 60.163 40.000 0.00 0.00 0.00 4.16
5065 7893 5.908341 TGTTTCCCCTTTATTTTGTCACAC 58.092 37.500 0.00 0.00 0.00 3.82
5066 7894 6.070767 TGTTGTTTCCCCTTTATTTTGTCACA 60.071 34.615 0.00 0.00 0.00 3.58
5067 7895 6.342111 TGTTGTTTCCCCTTTATTTTGTCAC 58.658 36.000 0.00 0.00 0.00 3.67
5068 7896 6.546428 TGTTGTTTCCCCTTTATTTTGTCA 57.454 33.333 0.00 0.00 0.00 3.58
5069 7897 7.172532 GGATTGTTGTTTCCCCTTTATTTTGTC 59.827 37.037 0.00 0.00 0.00 3.18
5070 7898 6.995686 GGATTGTTGTTTCCCCTTTATTTTGT 59.004 34.615 0.00 0.00 0.00 2.83
5071 7899 7.223584 AGGATTGTTGTTTCCCCTTTATTTTG 58.776 34.615 0.00 0.00 32.05 2.44
5072 7900 7.387265 AGGATTGTTGTTTCCCCTTTATTTT 57.613 32.000 0.00 0.00 32.05 1.82
5073 7901 6.013725 GGAGGATTGTTGTTTCCCCTTTATTT 60.014 38.462 0.00 0.00 32.05 1.40
5074 7902 5.483937 GGAGGATTGTTGTTTCCCCTTTATT 59.516 40.000 0.00 0.00 32.05 1.40
5075 7903 5.023452 GGAGGATTGTTGTTTCCCCTTTAT 58.977 41.667 0.00 0.00 32.05 1.40
5076 7904 4.107311 AGGAGGATTGTTGTTTCCCCTTTA 59.893 41.667 0.00 0.00 32.14 1.85
5077 7905 3.116746 AGGAGGATTGTTGTTTCCCCTTT 60.117 43.478 0.00 0.00 32.14 3.11
5078 7906 2.450886 AGGAGGATTGTTGTTTCCCCTT 59.549 45.455 0.00 0.00 32.14 3.95
5079 7907 2.041755 GAGGAGGATTGTTGTTTCCCCT 59.958 50.000 0.00 0.00 36.18 4.79
5080 7908 2.225017 TGAGGAGGATTGTTGTTTCCCC 60.225 50.000 0.00 0.00 32.05 4.81
5081 7909 3.154827 TGAGGAGGATTGTTGTTTCCC 57.845 47.619 0.00 0.00 32.05 3.97
5082 7910 4.398319 TCTTGAGGAGGATTGTTGTTTCC 58.602 43.478 0.00 0.00 0.00 3.13
5083 7911 6.391227 TTTCTTGAGGAGGATTGTTGTTTC 57.609 37.500 0.00 0.00 0.00 2.78
5084 7912 6.239402 CCATTTCTTGAGGAGGATTGTTGTTT 60.239 38.462 0.00 0.00 0.00 2.83
5085 7913 5.244626 CCATTTCTTGAGGAGGATTGTTGTT 59.755 40.000 0.00 0.00 0.00 2.83
5086 7914 4.768968 CCATTTCTTGAGGAGGATTGTTGT 59.231 41.667 0.00 0.00 0.00 3.32
5087 7915 4.768968 ACCATTTCTTGAGGAGGATTGTTG 59.231 41.667 0.00 0.00 0.00 3.33
5088 7916 4.768968 CACCATTTCTTGAGGAGGATTGTT 59.231 41.667 0.00 0.00 0.00 2.83
5089 7917 4.338879 CACCATTTCTTGAGGAGGATTGT 58.661 43.478 0.00 0.00 0.00 2.71
5090 7918 3.129988 GCACCATTTCTTGAGGAGGATTG 59.870 47.826 0.00 0.00 0.00 2.67
5091 7919 3.011032 AGCACCATTTCTTGAGGAGGATT 59.989 43.478 0.00 0.00 0.00 3.01
5092 7920 2.579860 AGCACCATTTCTTGAGGAGGAT 59.420 45.455 0.00 0.00 0.00 3.24
5093 7921 1.988107 AGCACCATTTCTTGAGGAGGA 59.012 47.619 0.00 0.00 0.00 3.71
5094 7922 2.089980 CAGCACCATTTCTTGAGGAGG 58.910 52.381 0.00 0.00 0.00 4.30
5095 7923 3.063510 TCAGCACCATTTCTTGAGGAG 57.936 47.619 0.00 0.00 0.00 3.69
5096 7924 3.726557 ATCAGCACCATTTCTTGAGGA 57.273 42.857 0.00 0.00 0.00 3.71
5097 7925 3.881688 CCTATCAGCACCATTTCTTGAGG 59.118 47.826 0.00 0.00 0.00 3.86
5098 7926 3.314635 GCCTATCAGCACCATTTCTTGAG 59.685 47.826 0.00 0.00 0.00 3.02
5099 7927 3.282021 GCCTATCAGCACCATTTCTTGA 58.718 45.455 0.00 0.00 0.00 3.02
5100 7928 3.018856 TGCCTATCAGCACCATTTCTTG 58.981 45.455 0.00 0.00 38.00 3.02
5101 7929 3.054139 TCTGCCTATCAGCACCATTTCTT 60.054 43.478 0.00 0.00 42.56 2.52
5102 7930 2.507058 TCTGCCTATCAGCACCATTTCT 59.493 45.455 0.00 0.00 42.56 2.52
5103 7931 2.615912 GTCTGCCTATCAGCACCATTTC 59.384 50.000 0.00 0.00 42.56 2.17
5104 7932 2.025981 TGTCTGCCTATCAGCACCATTT 60.026 45.455 0.00 0.00 42.56 2.32
5105 7933 1.561076 TGTCTGCCTATCAGCACCATT 59.439 47.619 0.00 0.00 42.56 3.16
5106 7934 1.206878 TGTCTGCCTATCAGCACCAT 58.793 50.000 0.00 0.00 42.56 3.55
5107 7935 1.206878 ATGTCTGCCTATCAGCACCA 58.793 50.000 0.00 0.00 42.56 4.17
5108 7936 3.692257 ATATGTCTGCCTATCAGCACC 57.308 47.619 0.00 0.00 42.56 5.01
5109 7937 3.999663 GGAATATGTCTGCCTATCAGCAC 59.000 47.826 0.00 0.00 42.56 4.40
5110 7938 3.906218 AGGAATATGTCTGCCTATCAGCA 59.094 43.478 0.00 0.00 42.56 4.41
5111 7939 4.550076 AGGAATATGTCTGCCTATCAGC 57.450 45.455 0.00 0.00 42.56 4.26
5112 7940 6.994496 TGAAAAGGAATATGTCTGCCTATCAG 59.006 38.462 0.00 0.00 44.21 2.90
5113 7941 6.899089 TGAAAAGGAATATGTCTGCCTATCA 58.101 36.000 0.00 0.00 0.00 2.15
5114 7942 7.446625 ACATGAAAAGGAATATGTCTGCCTATC 59.553 37.037 0.00 0.00 0.00 2.08
5115 7943 7.293073 ACATGAAAAGGAATATGTCTGCCTAT 58.707 34.615 0.00 0.00 0.00 2.57
5116 7944 6.662755 ACATGAAAAGGAATATGTCTGCCTA 58.337 36.000 0.00 0.00 0.00 3.93
5117 7945 5.513233 ACATGAAAAGGAATATGTCTGCCT 58.487 37.500 0.00 0.00 0.00 4.75
5118 7946 5.841957 ACATGAAAAGGAATATGTCTGCC 57.158 39.130 0.00 0.00 0.00 4.85
5119 7947 7.066284 ACAGTACATGAAAAGGAATATGTCTGC 59.934 37.037 0.00 0.00 35.07 4.26
5120 7948 8.393366 CACAGTACATGAAAAGGAATATGTCTG 58.607 37.037 0.00 0.00 36.25 3.51
5121 7949 7.554118 CCACAGTACATGAAAAGGAATATGTCT 59.446 37.037 0.00 0.00 35.55 3.41
5122 7950 7.336931 ACCACAGTACATGAAAAGGAATATGTC 59.663 37.037 0.00 0.00 35.55 3.06
5123 7951 7.121168 CACCACAGTACATGAAAAGGAATATGT 59.879 37.037 0.00 0.00 37.51 2.29
5124 7952 7.475015 CACCACAGTACATGAAAAGGAATATG 58.525 38.462 0.00 0.00 0.00 1.78
5125 7953 6.095440 GCACCACAGTACATGAAAAGGAATAT 59.905 38.462 0.00 0.00 0.00 1.28
5126 7954 5.414454 GCACCACAGTACATGAAAAGGAATA 59.586 40.000 0.00 0.00 0.00 1.75
5127 7955 4.218417 GCACCACAGTACATGAAAAGGAAT 59.782 41.667 0.00 0.00 0.00 3.01
5128 7956 3.568007 GCACCACAGTACATGAAAAGGAA 59.432 43.478 0.00 0.00 0.00 3.36
5129 7957 3.146066 GCACCACAGTACATGAAAAGGA 58.854 45.455 0.00 0.00 0.00 3.36
5130 7958 2.884012 TGCACCACAGTACATGAAAAGG 59.116 45.455 0.00 0.00 0.00 3.11
5131 7959 4.275689 TCTTGCACCACAGTACATGAAAAG 59.724 41.667 0.00 0.00 0.00 2.27
5132 7960 4.203226 TCTTGCACCACAGTACATGAAAA 58.797 39.130 0.00 0.00 0.00 2.29
5133 7961 3.814625 TCTTGCACCACAGTACATGAAA 58.185 40.909 0.00 0.00 0.00 2.69
5134 7962 3.181455 ACTCTTGCACCACAGTACATGAA 60.181 43.478 0.00 0.00 0.00 2.57
5135 7963 2.368548 ACTCTTGCACCACAGTACATGA 59.631 45.455 0.00 0.00 0.00 3.07
5136 7964 2.771089 ACTCTTGCACCACAGTACATG 58.229 47.619 0.00 0.00 0.00 3.21
5137 7965 3.181455 TGAACTCTTGCACCACAGTACAT 60.181 43.478 0.00 0.00 0.00 2.29
5138 7966 2.169561 TGAACTCTTGCACCACAGTACA 59.830 45.455 0.00 0.00 0.00 2.90
5139 7967 2.802816 CTGAACTCTTGCACCACAGTAC 59.197 50.000 0.00 0.00 0.00 2.73
5140 7968 2.698274 TCTGAACTCTTGCACCACAGTA 59.302 45.455 0.00 0.00 0.00 2.74
5141 7969 1.486310 TCTGAACTCTTGCACCACAGT 59.514 47.619 0.00 0.00 0.00 3.55
5142 7970 2.245159 TCTGAACTCTTGCACCACAG 57.755 50.000 0.00 0.00 0.00 3.66
5143 7971 2.170397 TCTTCTGAACTCTTGCACCACA 59.830 45.455 0.00 0.00 0.00 4.17
5144 7972 2.838736 TCTTCTGAACTCTTGCACCAC 58.161 47.619 0.00 0.00 0.00 4.16
5145 7973 3.558931 TTCTTCTGAACTCTTGCACCA 57.441 42.857 0.00 0.00 0.00 4.17
5146 7974 4.516698 TGATTTCTTCTGAACTCTTGCACC 59.483 41.667 0.00 0.00 34.31 5.01
5147 7975 5.334724 CCTGATTTCTTCTGAACTCTTGCAC 60.335 44.000 0.00 0.00 34.31 4.57
5148 7976 4.758674 CCTGATTTCTTCTGAACTCTTGCA 59.241 41.667 0.00 0.00 34.31 4.08
5149 7977 4.379290 GCCTGATTTCTTCTGAACTCTTGC 60.379 45.833 0.00 0.00 34.31 4.01
5150 7978 5.002516 AGCCTGATTTCTTCTGAACTCTTG 58.997 41.667 0.00 0.00 34.31 3.02
5151 7979 5.221803 TGAGCCTGATTTCTTCTGAACTCTT 60.222 40.000 0.00 0.00 34.31 2.85
5152 7980 4.285517 TGAGCCTGATTTCTTCTGAACTCT 59.714 41.667 0.00 0.00 34.31 3.24
5153 7981 4.391523 GTGAGCCTGATTTCTTCTGAACTC 59.608 45.833 0.00 0.00 33.94 3.01
5154 7982 4.322567 GTGAGCCTGATTTCTTCTGAACT 58.677 43.478 0.00 0.00 31.02 3.01
5155 7983 3.438434 GGTGAGCCTGATTTCTTCTGAAC 59.562 47.826 0.00 0.00 31.02 3.18
5156 7984 3.328931 AGGTGAGCCTGATTTCTTCTGAA 59.671 43.478 0.00 0.00 45.05 3.02
5157 7985 2.909006 AGGTGAGCCTGATTTCTTCTGA 59.091 45.455 0.00 0.00 45.05 3.27
5158 7986 3.347077 AGGTGAGCCTGATTTCTTCTG 57.653 47.619 0.00 0.00 45.05 3.02
5159 7987 4.968080 AGATAGGTGAGCCTGATTTCTTCT 59.032 41.667 0.00 0.00 46.47 2.85
5160 7988 5.289083 AGATAGGTGAGCCTGATTTCTTC 57.711 43.478 0.00 0.00 46.47 2.87
5161 7989 5.435291 CAAGATAGGTGAGCCTGATTTCTT 58.565 41.667 0.00 0.00 46.47 2.52
5162 7990 4.141528 CCAAGATAGGTGAGCCTGATTTCT 60.142 45.833 0.00 0.00 46.47 2.52
5163 7991 4.133078 CCAAGATAGGTGAGCCTGATTTC 58.867 47.826 0.00 0.00 46.47 2.17
5164 7992 3.782523 TCCAAGATAGGTGAGCCTGATTT 59.217 43.478 0.00 0.00 46.47 2.17
5165 7993 3.387962 TCCAAGATAGGTGAGCCTGATT 58.612 45.455 0.00 0.00 46.47 2.57
5166 7994 3.051940 TCCAAGATAGGTGAGCCTGAT 57.948 47.619 0.00 0.00 46.47 2.90
5167 7995 2.550277 TCCAAGATAGGTGAGCCTGA 57.450 50.000 0.00 0.00 46.47 3.86
5168 7996 2.158842 CCTTCCAAGATAGGTGAGCCTG 60.159 54.545 0.00 0.00 46.47 4.85
5170 7998 1.141858 CCCTTCCAAGATAGGTGAGCC 59.858 57.143 0.00 0.00 0.00 4.70
5171 7999 1.840635 ACCCTTCCAAGATAGGTGAGC 59.159 52.381 0.00 0.00 0.00 4.26
5172 8000 2.436173 GGACCCTTCCAAGATAGGTGAG 59.564 54.545 0.00 0.00 42.30 3.51
5173 8001 2.478292 GGACCCTTCCAAGATAGGTGA 58.522 52.381 0.00 0.00 42.30 4.02
5174 8002 1.139058 CGGACCCTTCCAAGATAGGTG 59.861 57.143 0.00 0.00 43.00 4.00
5175 8003 1.007963 TCGGACCCTTCCAAGATAGGT 59.992 52.381 0.00 0.00 43.00 3.08
5176 8004 1.413077 GTCGGACCCTTCCAAGATAGG 59.587 57.143 0.00 0.00 43.00 2.57
5177 8005 2.101582 CAGTCGGACCCTTCCAAGATAG 59.898 54.545 4.14 0.00 43.00 2.08
5178 8006 2.108168 CAGTCGGACCCTTCCAAGATA 58.892 52.381 4.14 0.00 43.00 1.98
5179 8007 0.905357 CAGTCGGACCCTTCCAAGAT 59.095 55.000 4.14 0.00 43.00 2.40
5180 8008 1.827399 GCAGTCGGACCCTTCCAAGA 61.827 60.000 4.14 0.00 43.00 3.02
5181 8009 1.376037 GCAGTCGGACCCTTCCAAG 60.376 63.158 4.14 0.00 43.00 3.61
5182 8010 1.827399 GAGCAGTCGGACCCTTCCAA 61.827 60.000 4.14 0.00 43.00 3.53
5183 8011 2.203788 AGCAGTCGGACCCTTCCA 60.204 61.111 4.14 0.00 43.00 3.53
5184 8012 0.683504 TAGAGCAGTCGGACCCTTCC 60.684 60.000 4.14 0.00 38.77 3.46
5185 8013 0.741915 CTAGAGCAGTCGGACCCTTC 59.258 60.000 4.14 0.13 0.00 3.46
5186 8014 0.039911 ACTAGAGCAGTCGGACCCTT 59.960 55.000 4.14 0.00 28.33 3.95
5187 8015 0.681564 CACTAGAGCAGTCGGACCCT 60.682 60.000 4.14 1.38 34.26 4.34
5188 8016 0.680280 TCACTAGAGCAGTCGGACCC 60.680 60.000 4.14 0.00 34.26 4.46
5189 8017 0.452585 GTCACTAGAGCAGTCGGACC 59.547 60.000 4.14 0.00 34.26 4.46
5190 8018 1.166129 TGTCACTAGAGCAGTCGGAC 58.834 55.000 0.00 0.00 34.26 4.79
5191 8019 2.017782 GATGTCACTAGAGCAGTCGGA 58.982 52.381 0.00 0.00 34.26 4.55
5192 8020 1.745653 TGATGTCACTAGAGCAGTCGG 59.254 52.381 0.00 0.00 34.26 4.79
5193 8021 3.433709 CTTGATGTCACTAGAGCAGTCG 58.566 50.000 0.00 0.00 34.26 4.18
5194 8022 3.186119 GCTTGATGTCACTAGAGCAGTC 58.814 50.000 0.00 0.00 34.26 3.51
5195 8023 2.093764 GGCTTGATGTCACTAGAGCAGT 60.094 50.000 0.00 0.00 38.32 4.40
5196 8024 2.093816 TGGCTTGATGTCACTAGAGCAG 60.094 50.000 0.00 0.00 32.01 4.24
5197 8025 1.901833 TGGCTTGATGTCACTAGAGCA 59.098 47.619 0.00 0.00 32.01 4.26
5198 8026 2.275318 GTGGCTTGATGTCACTAGAGC 58.725 52.381 0.00 0.00 46.94 4.09
5205 8033 3.118629 GGAGATACTGTGGCTTGATGTCA 60.119 47.826 0.00 0.00 0.00 3.58
5206 8034 3.462021 GGAGATACTGTGGCTTGATGTC 58.538 50.000 0.00 0.00 0.00 3.06
5207 8035 2.159043 CGGAGATACTGTGGCTTGATGT 60.159 50.000 0.00 0.00 0.00 3.06
5208 8036 2.477825 CGGAGATACTGTGGCTTGATG 58.522 52.381 0.00 0.00 0.00 3.07
5209 8037 1.414181 CCGGAGATACTGTGGCTTGAT 59.586 52.381 0.00 0.00 0.00 2.57
5210 8038 0.824109 CCGGAGATACTGTGGCTTGA 59.176 55.000 0.00 0.00 0.00 3.02
5211 8039 0.811616 GCCGGAGATACTGTGGCTTG 60.812 60.000 5.05 0.00 42.44 4.01
5212 8040 1.522569 GCCGGAGATACTGTGGCTT 59.477 57.895 5.05 0.00 42.44 4.35
5213 8041 2.435693 GGCCGGAGATACTGTGGCT 61.436 63.158 5.05 0.00 45.06 4.75
5214 8042 2.109181 GGCCGGAGATACTGTGGC 59.891 66.667 5.05 0.00 44.98 5.01
5215 8043 1.144057 GTGGCCGGAGATACTGTGG 59.856 63.158 5.05 0.00 0.00 4.17
5216 8044 0.103208 GAGTGGCCGGAGATACTGTG 59.897 60.000 5.05 0.00 0.00 3.66
5217 8045 0.324368 TGAGTGGCCGGAGATACTGT 60.324 55.000 5.05 0.00 0.00 3.55
5218 8046 0.387202 CTGAGTGGCCGGAGATACTG 59.613 60.000 5.05 0.00 0.00 2.74
5219 8047 0.259065 TCTGAGTGGCCGGAGATACT 59.741 55.000 5.05 2.30 0.00 2.12
5220 8048 1.112113 TTCTGAGTGGCCGGAGATAC 58.888 55.000 5.05 0.00 0.00 2.24
5221 8049 1.112113 GTTCTGAGTGGCCGGAGATA 58.888 55.000 5.05 0.00 0.00 1.98
5222 8050 1.617947 GGTTCTGAGTGGCCGGAGAT 61.618 60.000 5.05 0.00 0.00 2.75
5223 8051 2.283529 GGTTCTGAGTGGCCGGAGA 61.284 63.158 5.05 0.00 0.00 3.71
5224 8052 2.111999 TTGGTTCTGAGTGGCCGGAG 62.112 60.000 5.05 0.00 0.00 4.63
5225 8053 1.701031 TTTGGTTCTGAGTGGCCGGA 61.701 55.000 5.05 0.00 0.00 5.14
5226 8054 0.821711 TTTTGGTTCTGAGTGGCCGG 60.822 55.000 0.00 0.00 0.00 6.13
5227 8055 0.310854 GTTTTGGTTCTGAGTGGCCG 59.689 55.000 0.00 0.00 0.00 6.13
5228 8056 1.398692 TGTTTTGGTTCTGAGTGGCC 58.601 50.000 0.00 0.00 0.00 5.36
5229 8057 3.733443 ATTGTTTTGGTTCTGAGTGGC 57.267 42.857 0.00 0.00 0.00 5.01
5230 8058 5.163513 GCATATTGTTTTGGTTCTGAGTGG 58.836 41.667 0.00 0.00 0.00 4.00
5231 8059 5.163513 GGCATATTGTTTTGGTTCTGAGTG 58.836 41.667 0.00 0.00 0.00 3.51
5232 8060 4.220602 GGGCATATTGTTTTGGTTCTGAGT 59.779 41.667 0.00 0.00 0.00 3.41
5233 8061 4.463891 AGGGCATATTGTTTTGGTTCTGAG 59.536 41.667 0.00 0.00 0.00 3.35
5234 8062 4.415596 AGGGCATATTGTTTTGGTTCTGA 58.584 39.130 0.00 0.00 0.00 3.27
5235 8063 4.806640 AGGGCATATTGTTTTGGTTCTG 57.193 40.909 0.00 0.00 0.00 3.02
5236 8064 6.435164 AGATAGGGCATATTGTTTTGGTTCT 58.565 36.000 0.00 0.00 0.00 3.01
5237 8065 6.715347 AGATAGGGCATATTGTTTTGGTTC 57.285 37.500 0.00 0.00 0.00 3.62
5238 8066 6.667414 TGAAGATAGGGCATATTGTTTTGGTT 59.333 34.615 0.00 0.00 0.00 3.67
5239 8067 6.194235 TGAAGATAGGGCATATTGTTTTGGT 58.806 36.000 0.00 0.00 0.00 3.67
5240 8068 6.322201 ACTGAAGATAGGGCATATTGTTTTGG 59.678 38.462 0.00 0.00 0.00 3.28
5241 8069 7.338800 ACTGAAGATAGGGCATATTGTTTTG 57.661 36.000 0.00 0.00 0.00 2.44
5242 8070 9.474313 TTTACTGAAGATAGGGCATATTGTTTT 57.526 29.630 0.00 0.00 0.00 2.43
5243 8071 9.474313 TTTTACTGAAGATAGGGCATATTGTTT 57.526 29.630 0.00 0.00 0.00 2.83
5244 8072 8.903820 GTTTTACTGAAGATAGGGCATATTGTT 58.096 33.333 0.00 0.00 0.00 2.83
5245 8073 7.502561 GGTTTTACTGAAGATAGGGCATATTGT 59.497 37.037 0.00 0.00 0.00 2.71
5246 8074 7.040409 GGGTTTTACTGAAGATAGGGCATATTG 60.040 40.741 0.00 0.00 0.00 1.90
5247 8075 7.004691 GGGTTTTACTGAAGATAGGGCATATT 58.995 38.462 0.00 0.00 0.00 1.28
5248 8076 6.467339 GGGGTTTTACTGAAGATAGGGCATAT 60.467 42.308 0.00 0.00 0.00 1.78
5249 8077 5.163131 GGGGTTTTACTGAAGATAGGGCATA 60.163 44.000 0.00 0.00 0.00 3.14
5250 8078 4.386424 GGGGTTTTACTGAAGATAGGGCAT 60.386 45.833 0.00 0.00 0.00 4.40
5251 8079 3.053917 GGGGTTTTACTGAAGATAGGGCA 60.054 47.826 0.00 0.00 0.00 5.36
5252 8080 3.552875 GGGGTTTTACTGAAGATAGGGC 58.447 50.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.