Multiple sequence alignment - TraesCS3D01G202200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G202200 chr3D 100.000 4338 0 0 1 4338 246325555 246329892 0.000000e+00 8011.0
1 TraesCS3D01G202200 chr3D 81.481 108 19 1 4232 4338 612677386 612677279 2.150000e-13 87.9
2 TraesCS3D01G202200 chr3A 93.949 2925 90 23 1264 4158 337882561 337879694 0.000000e+00 4340.0
3 TraesCS3D01G202200 chr3A 93.250 637 12 13 674 1279 337883216 337882580 0.000000e+00 909.0
4 TraesCS3D01G202200 chr3A 91.957 373 17 8 211 582 337884110 337883750 1.080000e-140 510.0
5 TraesCS3D01G202200 chr3A 92.488 213 16 0 1 213 337884436 337884224 5.450000e-79 305.0
6 TraesCS3D01G202200 chr3A 95.238 42 2 0 632 673 337883317 337883276 2.800000e-07 67.6
7 TraesCS3D01G202200 chr3B 91.364 2837 125 52 1 2748 331556360 331553555 0.000000e+00 3771.0
8 TraesCS3D01G202200 chr3B 93.889 1080 27 18 2770 3836 331553568 331552515 0.000000e+00 1592.0
9 TraesCS3D01G202200 chr3B 91.892 518 22 8 3827 4338 331543606 331543103 0.000000e+00 706.0
10 TraesCS3D01G202200 chr7D 82.656 369 56 8 2961 3325 197150528 197150892 1.950000e-83 320.0
11 TraesCS3D01G202200 chr7D 84.694 98 12 3 4241 4337 35855815 35855720 1.280000e-15 95.3
12 TraesCS3D01G202200 chr7A 82.114 369 58 8 2961 3325 206582238 206582602 4.210000e-80 309.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G202200 chr3D 246325555 246329892 4337 False 8011.00 8011 100.0000 1 4338 1 chr3D.!!$F1 4337
1 TraesCS3D01G202200 chr3A 337879694 337884436 4742 True 1226.32 4340 93.3764 1 4158 5 chr3A.!!$R1 4157
2 TraesCS3D01G202200 chr3B 331552515 331556360 3845 True 2681.50 3771 92.6265 1 3836 2 chr3B.!!$R2 3835
3 TraesCS3D01G202200 chr3B 331543103 331543606 503 True 706.00 706 91.8920 3827 4338 1 chr3B.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 1282 0.036388 CTTTGCTTAGCGGGAGGACA 60.036 55.000 0.0 0.0 0.0 4.02 F
2126 2841 0.664767 GTGTCGCTTCTTCGTCTGCT 60.665 55.000 0.0 0.0 0.0 4.24 F
2596 3319 1.470805 GCAGGGACAACAACAACAACC 60.471 52.381 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2544 3267 0.033208 AGAGCAGAGACCAGAGAGGG 60.033 60.0 0.00 0.0 43.89 4.30 R
3025 3748 0.178992 CCAGGTGGCTGAACAGGAAA 60.179 55.0 3.99 0.0 0.00 3.13 R
4088 4849 1.110442 TTGGCAAATCGGGCTTATGG 58.890 50.0 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 8.831715 AAATTAAGCCAACAAATTTAGTCCAG 57.168 30.769 0.00 0.00 32.51 3.86
180 182 1.588674 TTTGTGCTCGATCCGTTTGT 58.411 45.000 0.00 0.00 0.00 2.83
218 336 2.095372 GGTAATCTGCGTTGTAGTTGCC 59.905 50.000 0.00 0.00 0.00 4.52
279 397 4.453136 CGTAGTGCCTGCTTTACCTAAAAA 59.547 41.667 0.00 0.00 0.00 1.94
377 496 4.052159 TGCAAATTTACACACCTGGTTG 57.948 40.909 0.00 1.95 0.00 3.77
443 562 1.135199 CAGCACTCCATTGCATTGGAC 60.135 52.381 23.27 15.16 45.62 4.02
446 565 0.680921 ACTCCATTGCATTGGACGGG 60.681 55.000 23.27 16.97 40.90 5.28
618 741 4.481112 CATGCTTTGTCGGCCCGC 62.481 66.667 0.00 0.00 0.00 6.13
667 1173 5.610982 TCCATCCTAACCATAAGCACCTATT 59.389 40.000 0.00 0.00 0.00 1.73
669 1175 7.038302 TCCATCCTAACCATAAGCACCTATTAG 60.038 40.741 0.00 0.00 0.00 1.73
717 1282 0.036388 CTTTGCTTAGCGGGAGGACA 60.036 55.000 0.00 0.00 0.00 4.02
1086 1688 2.683859 GCTGCTGCTTCATGTCGCA 61.684 57.895 8.53 10.37 36.03 5.10
1288 1930 2.165845 CCGAGAGAGATTAACCGTGGTT 59.834 50.000 9.57 9.57 41.65 3.67
1302 1944 1.459592 CGTGGTTCTCGTTGGTTCATC 59.540 52.381 0.00 0.00 0.00 2.92
1707 2351 2.355115 GTTCGGAAGGGTGCCCAT 59.645 61.111 10.26 0.00 38.92 4.00
1850 2519 3.684788 ACATTGTAAGCACGACCTGAATC 59.315 43.478 0.00 0.00 0.00 2.52
1918 2622 0.890996 CCCCTCCGCTAAATGATGCC 60.891 60.000 0.00 0.00 0.00 4.40
1953 2658 5.051153 GCATCCGAAAAAGTTGGGTAAAAA 58.949 37.500 0.00 0.00 34.37 1.94
2034 2749 3.445096 GCACAGCTTTTAACCTCATGGAT 59.555 43.478 0.00 0.00 37.04 3.41
2035 2750 4.082026 GCACAGCTTTTAACCTCATGGATT 60.082 41.667 0.00 0.00 37.04 3.01
2036 2751 5.567423 GCACAGCTTTTAACCTCATGGATTT 60.567 40.000 0.00 0.00 37.04 2.17
2037 2752 5.865552 CACAGCTTTTAACCTCATGGATTTG 59.134 40.000 0.00 0.00 37.04 2.32
2038 2753 5.774690 ACAGCTTTTAACCTCATGGATTTGA 59.225 36.000 0.00 0.00 37.04 2.69
2039 2754 6.095377 CAGCTTTTAACCTCATGGATTTGAC 58.905 40.000 0.00 0.00 37.04 3.18
2040 2755 6.012745 AGCTTTTAACCTCATGGATTTGACT 58.987 36.000 0.00 0.00 37.04 3.41
2041 2756 6.071728 AGCTTTTAACCTCATGGATTTGACTG 60.072 38.462 0.00 0.00 37.04 3.51
2042 2757 6.588719 TTTTAACCTCATGGATTTGACTGG 57.411 37.500 0.00 0.00 37.04 4.00
2043 2758 5.512942 TTAACCTCATGGATTTGACTGGA 57.487 39.130 0.00 0.00 37.04 3.86
2098 2813 1.740380 GCTAACATCCGCAGAGAGCAA 60.740 52.381 0.00 0.00 46.13 3.91
2126 2841 0.664767 GTGTCGCTTCTTCGTCTGCT 60.665 55.000 0.00 0.00 0.00 4.24
2226 2941 3.323979 AGTGTCAAACAACGTCCTAGGAT 59.676 43.478 16.27 0.00 0.00 3.24
2596 3319 1.470805 GCAGGGACAACAACAACAACC 60.471 52.381 0.00 0.00 0.00 3.77
2610 3333 7.599171 ACAACAACAACCTATAATTAACAGCC 58.401 34.615 0.00 0.00 0.00 4.85
2748 3471 8.129211 CGTCTGTCTGGTAAAAGAAAAGAAAAT 58.871 33.333 0.00 0.00 0.00 1.82
3010 3733 4.791069 GGGTCGGGGGAGCTGGTA 62.791 72.222 0.00 0.00 0.00 3.25
3025 3748 2.748388 CTGGTAGGTTACTGGCCTAGT 58.252 52.381 3.32 8.73 43.56 2.57
3371 4094 2.453521 TGGATAGTCGTAGCCACAACT 58.546 47.619 0.00 0.00 37.47 3.16
3380 4103 5.581085 AGTCGTAGCCACAACTAATTCATTC 59.419 40.000 0.00 0.00 0.00 2.67
3421 4144 9.295214 CTTTCTTTCTTTCTTTCTTTCTGGAAC 57.705 33.333 0.00 0.00 0.00 3.62
3522 4248 4.517832 GGGTGGGTTCACTACTTGTAAAAG 59.482 45.833 0.00 0.00 43.17 2.27
3523 4249 5.370679 GGTGGGTTCACTACTTGTAAAAGA 58.629 41.667 0.00 0.00 43.17 2.52
3524 4250 6.002082 GGTGGGTTCACTACTTGTAAAAGAT 58.998 40.000 0.00 0.00 43.17 2.40
3525 4251 6.072673 GGTGGGTTCACTACTTGTAAAAGATG 60.073 42.308 0.00 0.00 43.17 2.90
3562 4288 4.997395 ACCTCAACAATGTAGTGTAGCTTG 59.003 41.667 0.00 0.00 0.00 4.01
3605 4345 1.270839 GCCAACTCAGCACTACTCCAA 60.271 52.381 0.00 0.00 0.00 3.53
3697 4451 5.707242 TCTTCACTTACTGGACAGTAGTG 57.293 43.478 22.20 22.20 43.92 2.74
3842 4596 5.805994 CACTAGTGTATTTCTCCGGAAACTC 59.194 44.000 15.06 0.44 43.16 3.01
3938 4698 2.885554 GCTTCCATCCATGTTTCCCTGT 60.886 50.000 0.00 0.00 0.00 4.00
4037 4797 5.667466 TCGATACCTCCTTCATGTTTTACC 58.333 41.667 0.00 0.00 0.00 2.85
4048 4809 8.938906 TCCTTCATGTTTTACCGAAAATAGTAC 58.061 33.333 0.00 0.00 36.92 2.73
4049 4810 8.943002 CCTTCATGTTTTACCGAAAATAGTACT 58.057 33.333 0.00 0.00 36.92 2.73
4088 4849 3.503748 AGAAGGCACACTGTAAAGAATGC 59.496 43.478 5.00 5.00 0.00 3.56
4160 4921 1.220529 ACAATCTGTGACGTGTGCTG 58.779 50.000 0.00 0.00 0.00 4.41
4185 4946 1.452651 CATGGGGAGCGCTTCATGT 60.453 57.895 26.76 9.72 34.12 3.21
4213 4974 3.343421 GGTGGTGTCGAACGGTGC 61.343 66.667 0.00 0.00 0.00 5.01
4229 4990 1.597663 GGTGCTGCGTACATAATGGAC 59.402 52.381 0.00 0.00 0.00 4.02
4280 5041 7.624360 AATCTAAAATGTAGCATCAAACGGA 57.376 32.000 0.00 0.00 0.00 4.69
4281 5042 7.807977 ATCTAAAATGTAGCATCAAACGGAT 57.192 32.000 0.00 0.00 36.39 4.18
4282 5043 8.902540 ATCTAAAATGTAGCATCAAACGGATA 57.097 30.769 0.00 0.00 33.95 2.59
4283 5044 8.138365 TCTAAAATGTAGCATCAAACGGATAC 57.862 34.615 0.00 0.00 33.95 2.24
4284 5045 6.751514 AAAATGTAGCATCAAACGGATACA 57.248 33.333 0.00 0.00 33.95 2.29
4285 5046 6.751514 AAATGTAGCATCAAACGGATACAA 57.248 33.333 0.00 0.00 33.95 2.41
4286 5047 6.751514 AATGTAGCATCAAACGGATACAAA 57.248 33.333 0.00 0.00 33.95 2.83
4287 5048 6.751514 ATGTAGCATCAAACGGATACAAAA 57.248 33.333 0.00 0.00 33.95 2.44
4288 5049 6.751514 TGTAGCATCAAACGGATACAAAAT 57.248 33.333 0.00 0.00 33.95 1.82
4289 5050 7.851387 TGTAGCATCAAACGGATACAAAATA 57.149 32.000 0.00 0.00 33.95 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 7.325097 ACAAAAACGAACGATATTCATCCAAAC 59.675 33.333 0.14 0.00 0.00 2.93
180 182 0.042431 ACCAAATGCCTGGCCCATTA 59.958 50.000 17.53 0.00 40.45 1.90
218 336 0.672342 AGTACGTATGCTAAGGGGCG 59.328 55.000 0.00 0.00 34.52 6.13
279 397 3.476552 ACTCATGTCATGTGTTTCGGTT 58.523 40.909 13.51 0.00 33.61 4.44
280 398 3.126001 ACTCATGTCATGTGTTTCGGT 57.874 42.857 13.51 1.41 33.61 4.69
281 399 3.250762 ACAACTCATGTCATGTGTTTCGG 59.749 43.478 23.97 17.46 42.37 4.30
377 496 1.153469 GTAGCAGCAGCAGGTCTCC 60.153 63.158 3.17 0.00 45.49 3.71
443 562 2.883828 AAGTGGACTGGAGTGCCCG 61.884 63.158 0.00 0.00 37.93 6.13
446 565 1.302832 CCCAAGTGGACTGGAGTGC 60.303 63.158 0.00 0.00 37.39 4.40
475 594 2.289444 GCTTTTGGTAAAGGAAAGGGGC 60.289 50.000 0.00 0.00 40.90 5.80
482 601 0.955905 GGTGCGCTTTTGGTAAAGGA 59.044 50.000 9.73 0.00 40.90 3.36
620 743 1.143073 GTGTTGGGATTAGCTAGGGGG 59.857 57.143 0.00 0.00 0.00 5.40
621 744 1.143073 GGTGTTGGGATTAGCTAGGGG 59.857 57.143 0.00 0.00 0.00 4.79
622 745 1.143073 GGGTGTTGGGATTAGCTAGGG 59.857 57.143 0.00 0.00 0.00 3.53
623 746 2.104963 GAGGGTGTTGGGATTAGCTAGG 59.895 54.545 0.00 0.00 0.00 3.02
624 747 2.104963 GGAGGGTGTTGGGATTAGCTAG 59.895 54.545 0.00 0.00 0.00 3.42
625 748 2.124411 GGAGGGTGTTGGGATTAGCTA 58.876 52.381 0.00 0.00 0.00 3.32
626 749 0.919710 GGAGGGTGTTGGGATTAGCT 59.080 55.000 0.00 0.00 0.00 3.32
627 750 0.623723 TGGAGGGTGTTGGGATTAGC 59.376 55.000 0.00 0.00 0.00 3.09
628 751 2.158608 GGATGGAGGGTGTTGGGATTAG 60.159 54.545 0.00 0.00 0.00 1.73
629 752 1.850345 GGATGGAGGGTGTTGGGATTA 59.150 52.381 0.00 0.00 0.00 1.75
630 753 0.631212 GGATGGAGGGTGTTGGGATT 59.369 55.000 0.00 0.00 0.00 3.01
667 1173 1.763256 AAGGCCCCCGCGATTACTA 60.763 57.895 8.23 0.00 35.02 1.82
669 1175 2.900337 CAAGGCCCCCGCGATTAC 60.900 66.667 8.23 0.00 35.02 1.89
717 1282 1.078656 AGAGGAGGAGAAGGAGCACTT 59.921 52.381 0.00 0.00 43.65 3.16
727 1298 2.243736 GAGGAGGAGAAAGAGGAGGAGA 59.756 54.545 0.00 0.00 0.00 3.71
809 1389 1.741032 GTGGCAGCTCAGCTCAGAC 60.741 63.158 0.00 0.00 36.40 3.51
1288 1930 0.601057 TCTGCGATGAACCAACGAGA 59.399 50.000 0.90 0.00 31.46 4.04
1584 2228 2.032528 CCCAAAGCTGCACTCCGA 59.967 61.111 1.02 0.00 0.00 4.55
1806 2475 5.368523 TGTACTCCCTCCTTGAAGAAAGAAA 59.631 40.000 0.00 0.00 38.24 2.52
1807 2476 4.905456 TGTACTCCCTCCTTGAAGAAAGAA 59.095 41.667 0.00 0.00 38.24 2.52
1808 2477 4.489737 TGTACTCCCTCCTTGAAGAAAGA 58.510 43.478 0.00 0.00 38.24 2.52
1809 2478 4.891992 TGTACTCCCTCCTTGAAGAAAG 57.108 45.455 0.00 0.00 35.47 2.62
1818 2487 3.197983 GTGCTTACAATGTACTCCCTCCT 59.802 47.826 0.00 0.00 0.00 3.69
1850 2519 6.407202 AGATTTACAGGCTACAGTAACTTGG 58.593 40.000 0.00 0.00 29.68 3.61
1918 2622 4.685169 TTTCGGATGCTCTGCTTTTTAG 57.315 40.909 0.00 0.00 0.00 1.85
1953 2658 0.040870 CGCTCTGCTCGATATCACGT 60.041 55.000 3.12 0.00 34.70 4.49
2034 2749 5.055812 GCAAACCAATCAAATCCAGTCAAA 58.944 37.500 0.00 0.00 0.00 2.69
2035 2750 4.502950 GGCAAACCAATCAAATCCAGTCAA 60.503 41.667 0.00 0.00 35.26 3.18
2036 2751 3.006752 GGCAAACCAATCAAATCCAGTCA 59.993 43.478 0.00 0.00 35.26 3.41
2037 2752 3.588955 GGCAAACCAATCAAATCCAGTC 58.411 45.455 0.00 0.00 35.26 3.51
2038 2753 2.029110 CGGCAAACCAATCAAATCCAGT 60.029 45.455 0.00 0.00 34.57 4.00
2039 2754 2.029110 ACGGCAAACCAATCAAATCCAG 60.029 45.455 0.00 0.00 34.57 3.86
2040 2755 1.967066 ACGGCAAACCAATCAAATCCA 59.033 42.857 0.00 0.00 34.57 3.41
2041 2756 2.736192 CAACGGCAAACCAATCAAATCC 59.264 45.455 0.00 0.00 34.57 3.01
2042 2757 2.157474 GCAACGGCAAACCAATCAAATC 59.843 45.455 0.00 0.00 40.72 2.17
2043 2758 2.142319 GCAACGGCAAACCAATCAAAT 58.858 42.857 0.00 0.00 40.72 2.32
2098 2813 3.310860 GAAGCGACACCCGGGTCAT 62.311 63.158 27.51 16.18 37.66 3.06
2213 2928 0.753262 CCCTCCATCCTAGGACGTTG 59.247 60.000 15.42 8.87 36.08 4.10
2226 2941 5.027460 TGCAGTTAATTACTACTCCCTCCA 58.973 41.667 0.00 0.00 34.56 3.86
2445 3168 1.847328 TAACCCAGATCTGCGACAGA 58.153 50.000 17.76 11.12 44.99 3.41
2540 3263 2.246067 AGCAGAGACCAGAGAGGGAATA 59.754 50.000 0.00 0.00 43.89 1.75
2544 3267 0.033208 AGAGCAGAGACCAGAGAGGG 60.033 60.000 0.00 0.00 43.89 4.30
2610 3333 1.063912 TGTCACTCAAAACAGCAAGCG 59.936 47.619 0.00 0.00 0.00 4.68
2624 3347 4.008933 GCGGGCTCACCTGTCACT 62.009 66.667 0.00 0.00 45.10 3.41
2748 3471 9.413048 TCTTTTCGTTTCTTTGCTTTTCTTTTA 57.587 25.926 0.00 0.00 0.00 1.52
2759 3482 8.168626 CCCTTTTCTTTTCTTTTCGTTTCTTTG 58.831 33.333 0.00 0.00 0.00 2.77
2767 3490 7.589574 TTCAAACCCTTTTCTTTTCTTTTCG 57.410 32.000 0.00 0.00 0.00 3.46
3010 3733 2.572104 CAGGAAACTAGGCCAGTAACCT 59.428 50.000 5.01 14.58 40.98 3.50
3025 3748 0.178992 CCAGGTGGCTGAACAGGAAA 60.179 55.000 3.99 0.00 0.00 3.13
3414 4137 6.042093 ACTGTAGAAGATGAACAAGTTCCAGA 59.958 38.462 10.19 0.00 38.77 3.86
3421 4144 5.237127 TGCACAACTGTAGAAGATGAACAAG 59.763 40.000 0.00 0.00 33.09 3.16
3562 4288 6.419710 GGCTACACTACATTGTTTTTGAAACC 59.580 38.462 0.00 0.00 0.00 3.27
3605 4345 4.453751 TGATGCATGCATGTAGTATGTGT 58.546 39.130 36.73 10.02 41.76 3.72
3697 4451 2.540101 GCGTGATTCATGTACTACCAGC 59.460 50.000 7.67 0.00 0.00 4.85
3700 4454 4.430007 TGAAGCGTGATTCATGTACTACC 58.570 43.478 7.67 0.00 34.31 3.18
3824 4578 5.021458 ACCTAGAGTTTCCGGAGAAATACA 58.979 41.667 3.34 0.00 43.67 2.29
3842 4596 6.532826 AGAAACGATACTCCCTACTACCTAG 58.467 44.000 0.00 0.00 0.00 3.02
3938 4698 6.280855 TCAGTAGATGCTTGTGCTTTACTA 57.719 37.500 0.00 0.00 40.48 1.82
4020 4780 5.699097 TTTTCGGTAAAACATGAAGGAGG 57.301 39.130 0.00 0.00 29.59 4.30
4028 4788 7.604927 TGCAGAGTACTATTTTCGGTAAAACAT 59.395 33.333 0.00 0.00 37.41 2.71
4029 4789 6.930164 TGCAGAGTACTATTTTCGGTAAAACA 59.070 34.615 0.00 0.00 37.41 2.83
4037 4797 6.216750 GCCTATTGCAGAGTACTATTTTCG 57.783 41.667 0.00 0.00 40.77 3.46
4088 4849 1.110442 TTGGCAAATCGGGCTTATGG 58.890 50.000 0.00 0.00 0.00 2.74
4185 4946 2.498078 TCGACACCACCATTAGCATACA 59.502 45.455 0.00 0.00 0.00 2.29
4259 5020 7.915508 TGTATCCGTTTGATGCTACATTTTAG 58.084 34.615 0.00 0.00 37.04 1.85
4276 5037 9.328845 ACGTTACCAATTATATTTTGTATCCGT 57.671 29.630 0.00 8.99 0.00 4.69
4277 5038 9.801714 GACGTTACCAATTATATTTTGTATCCG 57.198 33.333 0.00 8.24 0.00 4.18
4280 5041 8.776470 CCGGACGTTACCAATTATATTTTGTAT 58.224 33.333 0.00 0.00 0.00 2.29
4281 5042 7.254727 GCCGGACGTTACCAATTATATTTTGTA 60.255 37.037 5.05 0.00 0.00 2.41
4282 5043 6.458615 GCCGGACGTTACCAATTATATTTTGT 60.459 38.462 5.05 0.00 0.00 2.83
4283 5044 5.910723 GCCGGACGTTACCAATTATATTTTG 59.089 40.000 5.05 0.00 0.00 2.44
4284 5045 5.008911 GGCCGGACGTTACCAATTATATTTT 59.991 40.000 5.05 0.00 0.00 1.82
4285 5046 4.516321 GGCCGGACGTTACCAATTATATTT 59.484 41.667 5.05 0.00 0.00 1.40
4286 5047 4.067192 GGCCGGACGTTACCAATTATATT 58.933 43.478 5.05 0.00 0.00 1.28
4287 5048 3.325716 AGGCCGGACGTTACCAATTATAT 59.674 43.478 5.05 0.00 0.00 0.86
4288 5049 2.699846 AGGCCGGACGTTACCAATTATA 59.300 45.455 5.05 0.00 0.00 0.98
4289 5050 1.487558 AGGCCGGACGTTACCAATTAT 59.512 47.619 5.05 0.00 0.00 1.28
4294 5055 2.283388 AGAGGCCGGACGTTACCA 60.283 61.111 5.05 0.00 0.00 3.25
4300 5061 4.147449 TCATGCAGAGGCCGGACG 62.147 66.667 5.05 0.00 40.13 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.