Multiple sequence alignment - TraesCS3D01G198800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G198800 chr3D 100.000 3299 0 0 1 3299 216427286 216430584 0.000000e+00 6093
1 TraesCS3D01G198800 chr3D 89.119 386 18 2 2676 3038 575251022 575250638 3.000000e-125 459
2 TraesCS3D01G198800 chr6D 98.426 2669 39 1 631 3299 24255702 24258367 0.000000e+00 4693
3 TraesCS3D01G198800 chr6D 89.968 2502 118 44 631 3035 447818014 447820479 0.000000e+00 3107
4 TraesCS3D01G198800 chr6D 97.255 255 7 0 3044 3298 447823077 447823331 1.820000e-117 433
5 TraesCS3D01G198800 chr6D 96.875 64 2 0 288 351 422328671 422328608 1.250000e-19 108
6 TraesCS3D01G198800 chr5D 93.796 2466 91 22 630 3043 398263633 398261178 0.000000e+00 3650
7 TraesCS3D01G198800 chr5D 89.334 2522 126 51 631 3038 114472345 114469853 0.000000e+00 3035
8 TraesCS3D01G198800 chr5D 86.991 2506 174 68 631 3039 274114126 274116576 0.000000e+00 2682
9 TraesCS3D01G198800 chr5D 86.156 2492 192 72 630 3038 494245453 494243032 0.000000e+00 2549
10 TraesCS3D01G198800 chr5D 86.459 1994 169 43 632 2561 382518084 382520040 0.000000e+00 2093
11 TraesCS3D01G198800 chr5D 91.382 615 26 6 2445 3039 545534948 545535555 0.000000e+00 817
12 TraesCS3D01G198800 chr5D 97.647 255 6 0 3044 3298 398260244 398259990 3.910000e-119 438
13 TraesCS3D01G198800 chr5D 97.255 255 7 0 3044 3298 408550264 408550010 1.820000e-117 433
14 TraesCS3D01G198800 chr4D 93.169 1903 77 14 631 2502 97481197 97479317 0.000000e+00 2745
15 TraesCS3D01G198800 chr4D 97.647 255 6 0 3044 3298 97476272 97476018 3.910000e-119 438
16 TraesCS3D01G198800 chr4D 97.647 255 6 0 3044 3298 375072787 375073041 3.910000e-119 438
17 TraesCS3D01G198800 chr2D 90.805 2012 123 25 630 2592 601106687 601104689 0.000000e+00 2634
18 TraesCS3D01G198800 chr2D 88.835 206 17 4 2833 3038 147379364 147379165 7.070000e-62 248
19 TraesCS3D01G198800 chr5A 89.264 2105 119 48 858 2874 574041125 574039040 0.000000e+00 2536
20 TraesCS3D01G198800 chr5A 85.421 974 89 24 631 1564 647551125 647552085 0.000000e+00 963
21 TraesCS3D01G198800 chr5A 97.255 255 7 0 3044 3298 567302791 567302537 1.820000e-117 433
22 TraesCS3D01G198800 chr1D 87.743 1958 142 45 631 2522 335412171 335414096 0.000000e+00 2196
23 TraesCS3D01G198800 chrUn 86.887 1998 180 49 631 2600 70158593 70156650 0.000000e+00 2163
24 TraesCS3D01G198800 chrUn 92.822 1421 73 5 1645 3039 97175492 97176909 0.000000e+00 2032
25 TraesCS3D01G198800 chrUn 92.081 1427 78 14 1645 3039 97255836 97257259 0.000000e+00 1977
26 TraesCS3D01G198800 chrUn 90.438 617 26 7 2445 3038 70156827 70156221 0.000000e+00 782
27 TraesCS3D01G198800 chr6A 94.019 1254 48 3 1806 3035 536675996 536677246 0.000000e+00 1875
28 TraesCS3D01G198800 chr6A 87.510 1209 96 32 630 1808 536665906 536667089 0.000000e+00 1345
29 TraesCS3D01G198800 chr6A 89.320 206 16 4 2833 3038 56127870 56127671 1.520000e-63 254
30 TraesCS3D01G198800 chr7D 86.243 1432 118 39 631 1991 545665631 545667054 0.000000e+00 1480
31 TraesCS3D01G198800 chr7D 85.799 845 61 29 748 1564 46570485 46571298 0.000000e+00 841
32 TraesCS3D01G198800 chr7D 91.382 615 27 6 2445 3039 625180409 625179801 0.000000e+00 819
33 TraesCS3D01G198800 chr7D 97.255 255 7 0 3044 3298 631813565 631813311 1.820000e-117 433
34 TraesCS3D01G198800 chr7D 95.161 62 3 0 288 349 630907765 630907826 7.530000e-17 99
35 TraesCS3D01G198800 chr4A 87.033 964 91 20 627 1564 630836256 630837211 0.000000e+00 1057
36 TraesCS3D01G198800 chr4A 97.255 255 7 0 3044 3298 708330336 708330082 1.820000e-117 433
37 TraesCS3D01G198800 chr2A 86.961 974 68 25 631 1564 769227587 769228541 0.000000e+00 1040
38 TraesCS3D01G198800 chr2A 85.640 968 85 23 631 1564 165244881 165245828 0.000000e+00 968
39 TraesCS3D01G198800 chr2A 95.312 64 3 0 288 351 725941401 725941338 5.820000e-18 102
40 TraesCS3D01G198800 chr7A 86.667 960 89 23 632 1564 563240953 563240006 0.000000e+00 1027
41 TraesCS3D01G198800 chr4B 85.596 965 91 26 632 1564 654074066 654073118 0.000000e+00 968
42 TraesCS3D01G198800 chr6B 85.494 972 88 25 631 1564 661538893 661539849 0.000000e+00 965
43 TraesCS3D01G198800 chr3B 98.249 514 9 0 1 514 311117311 311116798 0.000000e+00 900
44 TraesCS3D01G198800 chr3B 92.063 126 8 2 513 637 311116760 311116636 3.380000e-40 176
45 TraesCS3D01G198800 chr3B 96.875 64 2 0 288 351 667460165 667460102 1.250000e-19 108
46 TraesCS3D01G198800 chr3A 98.054 514 10 0 1 514 336878119 336877606 0.000000e+00 894
47 TraesCS3D01G198800 chr3A 91.379 116 10 0 513 628 336877568 336877453 3.410000e-35 159
48 TraesCS3D01G198800 chr1B 86.943 651 51 18 937 1564 557113927 557114566 0.000000e+00 701
49 TraesCS3D01G198800 chr1B 89.918 367 18 8 1259 1606 529699126 529698760 3.880000e-124 455
50 TraesCS3D01G198800 chr2B 88.525 61 7 0 290 350 64559080 64559020 1.270000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G198800 chr3D 216427286 216430584 3298 False 6093.0 6093 100.0000 1 3299 1 chr3D.!!$F1 3298
1 TraesCS3D01G198800 chr6D 24255702 24258367 2665 False 4693.0 4693 98.4260 631 3299 1 chr6D.!!$F1 2668
2 TraesCS3D01G198800 chr6D 447818014 447823331 5317 False 1770.0 3107 93.6115 631 3298 2 chr6D.!!$F2 2667
3 TraesCS3D01G198800 chr5D 114469853 114472345 2492 True 3035.0 3035 89.3340 631 3038 1 chr5D.!!$R1 2407
4 TraesCS3D01G198800 chr5D 274114126 274116576 2450 False 2682.0 2682 86.9910 631 3039 1 chr5D.!!$F1 2408
5 TraesCS3D01G198800 chr5D 494243032 494245453 2421 True 2549.0 2549 86.1560 630 3038 1 chr5D.!!$R3 2408
6 TraesCS3D01G198800 chr5D 382518084 382520040 1956 False 2093.0 2093 86.4590 632 2561 1 chr5D.!!$F2 1929
7 TraesCS3D01G198800 chr5D 398259990 398263633 3643 True 2044.0 3650 95.7215 630 3298 2 chr5D.!!$R4 2668
8 TraesCS3D01G198800 chr5D 545534948 545535555 607 False 817.0 817 91.3820 2445 3039 1 chr5D.!!$F3 594
9 TraesCS3D01G198800 chr4D 97476018 97481197 5179 True 1591.5 2745 95.4080 631 3298 2 chr4D.!!$R1 2667
10 TraesCS3D01G198800 chr2D 601104689 601106687 1998 True 2634.0 2634 90.8050 630 2592 1 chr2D.!!$R2 1962
11 TraesCS3D01G198800 chr5A 574039040 574041125 2085 True 2536.0 2536 89.2640 858 2874 1 chr5A.!!$R2 2016
12 TraesCS3D01G198800 chr5A 647551125 647552085 960 False 963.0 963 85.4210 631 1564 1 chr5A.!!$F1 933
13 TraesCS3D01G198800 chr1D 335412171 335414096 1925 False 2196.0 2196 87.7430 631 2522 1 chr1D.!!$F1 1891
14 TraesCS3D01G198800 chrUn 97175492 97176909 1417 False 2032.0 2032 92.8220 1645 3039 1 chrUn.!!$F1 1394
15 TraesCS3D01G198800 chrUn 97255836 97257259 1423 False 1977.0 1977 92.0810 1645 3039 1 chrUn.!!$F2 1394
16 TraesCS3D01G198800 chrUn 70156221 70158593 2372 True 1472.5 2163 88.6625 631 3038 2 chrUn.!!$R1 2407
17 TraesCS3D01G198800 chr6A 536675996 536677246 1250 False 1875.0 1875 94.0190 1806 3035 1 chr6A.!!$F2 1229
18 TraesCS3D01G198800 chr6A 536665906 536667089 1183 False 1345.0 1345 87.5100 630 1808 1 chr6A.!!$F1 1178
19 TraesCS3D01G198800 chr7D 545665631 545667054 1423 False 1480.0 1480 86.2430 631 1991 1 chr7D.!!$F2 1360
20 TraesCS3D01G198800 chr7D 46570485 46571298 813 False 841.0 841 85.7990 748 1564 1 chr7D.!!$F1 816
21 TraesCS3D01G198800 chr7D 625179801 625180409 608 True 819.0 819 91.3820 2445 3039 1 chr7D.!!$R1 594
22 TraesCS3D01G198800 chr4A 630836256 630837211 955 False 1057.0 1057 87.0330 627 1564 1 chr4A.!!$F1 937
23 TraesCS3D01G198800 chr2A 769227587 769228541 954 False 1040.0 1040 86.9610 631 1564 1 chr2A.!!$F2 933
24 TraesCS3D01G198800 chr2A 165244881 165245828 947 False 968.0 968 85.6400 631 1564 1 chr2A.!!$F1 933
25 TraesCS3D01G198800 chr7A 563240006 563240953 947 True 1027.0 1027 86.6670 632 1564 1 chr7A.!!$R1 932
26 TraesCS3D01G198800 chr4B 654073118 654074066 948 True 968.0 968 85.5960 632 1564 1 chr4B.!!$R1 932
27 TraesCS3D01G198800 chr6B 661538893 661539849 956 False 965.0 965 85.4940 631 1564 1 chr6B.!!$F1 933
28 TraesCS3D01G198800 chr3B 311116636 311117311 675 True 538.0 900 95.1560 1 637 2 chr3B.!!$R2 636
29 TraesCS3D01G198800 chr3A 336877453 336878119 666 True 526.5 894 94.7165 1 628 2 chr3A.!!$R1 627
30 TraesCS3D01G198800 chr1B 557113927 557114566 639 False 701.0 701 86.9430 937 1564 1 chr1B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 478 0.031314 CGTCCATCTGGTCCATCGAG 59.969 60.0 0.00 0.0 36.34 4.04 F
564 565 0.036306 CCGGCCACTTTAAGGACACT 59.964 55.0 2.24 0.0 31.91 3.55 F
595 596 0.174389 CCTGATCTGACCGTGGACTG 59.826 60.0 0.38 0.0 0.00 3.51 F
622 623 0.386352 CGCATAAAGCCGCCATGATG 60.386 55.0 0.00 0.0 41.38 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1651 0.675633 AATGCACTTGGGTTGAGCAC 59.324 50.000 0.0 0.0 38.12 4.40 R
1486 1741 0.912486 GCATCTAACCTGGACTGGGT 59.088 55.000 0.0 0.0 38.94 4.51 R
2161 2500 4.816385 TCTGTCAACTTCAACATCCTTCAC 59.184 41.667 0.0 0.0 0.00 3.18 R
2394 2744 5.295045 ACCAAACACTAGGTTAAACTTCACG 59.705 40.000 0.0 0.0 39.29 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 0.948141 GCATGGACATCTCTAGCCGC 60.948 60.000 0.00 0.00 0.00 6.53
91 92 0.678395 CATGGACATCTCTAGCCGCT 59.322 55.000 0.00 0.00 0.00 5.52
92 93 1.069823 CATGGACATCTCTAGCCGCTT 59.930 52.381 0.00 0.00 0.00 4.68
93 94 0.461548 TGGACATCTCTAGCCGCTTG 59.538 55.000 0.00 0.00 0.00 4.01
94 95 0.461961 GGACATCTCTAGCCGCTTGT 59.538 55.000 0.00 0.00 0.00 3.16
95 96 1.565305 GACATCTCTAGCCGCTTGTG 58.435 55.000 0.00 0.00 0.00 3.33
96 97 0.176680 ACATCTCTAGCCGCTTGTGG 59.823 55.000 0.00 0.00 0.00 4.17
97 98 0.176680 CATCTCTAGCCGCTTGTGGT 59.823 55.000 0.00 0.00 0.00 4.16
98 99 0.461961 ATCTCTAGCCGCTTGTGGTC 59.538 55.000 0.00 0.00 0.00 4.02
99 100 1.153549 CTCTAGCCGCTTGTGGTCC 60.154 63.158 0.00 0.00 0.00 4.46
100 101 2.509336 CTAGCCGCTTGTGGTCCG 60.509 66.667 0.00 0.00 0.00 4.79
101 102 3.296709 CTAGCCGCTTGTGGTCCGT 62.297 63.158 0.00 0.00 0.00 4.69
102 103 3.583276 TAGCCGCTTGTGGTCCGTG 62.583 63.158 0.00 0.00 0.00 4.94
104 105 2.340809 CCGCTTGTGGTCCGTGTA 59.659 61.111 0.00 0.00 0.00 2.90
105 106 2.025418 CCGCTTGTGGTCCGTGTAC 61.025 63.158 0.00 0.00 0.00 2.90
106 107 1.006571 CGCTTGTGGTCCGTGTACT 60.007 57.895 0.00 0.00 0.00 2.73
107 108 1.007336 CGCTTGTGGTCCGTGTACTC 61.007 60.000 0.00 0.00 0.00 2.59
108 109 0.669625 GCTTGTGGTCCGTGTACTCC 60.670 60.000 0.00 0.00 0.00 3.85
109 110 0.037605 CTTGTGGTCCGTGTACTCCC 60.038 60.000 0.00 0.00 0.00 4.30
110 111 0.470456 TTGTGGTCCGTGTACTCCCT 60.470 55.000 0.00 0.00 0.00 4.20
111 112 1.183030 TGTGGTCCGTGTACTCCCTG 61.183 60.000 0.00 0.00 0.00 4.45
112 113 1.608336 TGGTCCGTGTACTCCCTGG 60.608 63.158 0.00 0.00 0.00 4.45
113 114 2.577593 GTCCGTGTACTCCCTGGC 59.422 66.667 0.00 0.00 0.00 4.85
114 115 3.066190 TCCGTGTACTCCCTGGCG 61.066 66.667 0.00 0.00 0.00 5.69
115 116 4.143333 CCGTGTACTCCCTGGCGG 62.143 72.222 0.00 0.00 0.00 6.13
116 117 3.066190 CGTGTACTCCCTGGCGGA 61.066 66.667 0.00 0.00 38.83 5.54
117 118 2.642254 CGTGTACTCCCTGGCGGAA 61.642 63.158 0.00 0.00 41.40 4.30
118 119 1.079336 GTGTACTCCCTGGCGGAAC 60.079 63.158 0.00 0.00 41.40 3.62
119 120 1.534476 TGTACTCCCTGGCGGAACA 60.534 57.895 0.00 0.00 41.40 3.18
120 121 1.218316 GTACTCCCTGGCGGAACAG 59.782 63.158 0.00 0.00 41.40 3.16
121 122 1.229082 TACTCCCTGGCGGAACAGT 60.229 57.895 0.00 0.00 41.40 3.55
122 123 1.255667 TACTCCCTGGCGGAACAGTC 61.256 60.000 0.00 0.00 41.40 3.51
123 124 3.649277 CTCCCTGGCGGAACAGTCG 62.649 68.421 0.00 0.00 41.40 4.18
124 125 4.760047 CCCTGGCGGAACAGTCGG 62.760 72.222 0.00 0.00 36.75 4.79
129 130 3.723348 GCGGAACAGTCGGCAACC 61.723 66.667 0.00 0.00 46.49 3.77
130 131 2.030562 CGGAACAGTCGGCAACCT 59.969 61.111 0.00 0.00 0.00 3.50
131 132 2.317609 CGGAACAGTCGGCAACCTG 61.318 63.158 0.00 0.00 0.00 4.00
132 133 2.617274 GGAACAGTCGGCAACCTGC 61.617 63.158 0.00 0.00 44.08 4.85
133 134 2.954753 GAACAGTCGGCAACCTGCG 61.955 63.158 0.00 0.00 46.21 5.18
134 135 3.454587 AACAGTCGGCAACCTGCGA 62.455 57.895 0.00 0.00 46.21 5.10
135 136 2.664851 CAGTCGGCAACCTGCGAA 60.665 61.111 0.00 0.00 46.21 4.70
136 137 2.110213 AGTCGGCAACCTGCGAAA 59.890 55.556 0.00 0.00 46.21 3.46
137 138 1.302511 AGTCGGCAACCTGCGAAAT 60.303 52.632 0.00 0.00 46.21 2.17
138 139 1.134694 GTCGGCAACCTGCGAAATC 59.865 57.895 0.00 0.00 46.21 2.17
139 140 1.302112 TCGGCAACCTGCGAAATCA 60.302 52.632 0.00 0.00 46.21 2.57
140 141 0.886938 TCGGCAACCTGCGAAATCAA 60.887 50.000 0.00 0.00 46.21 2.57
141 142 0.729140 CGGCAACCTGCGAAATCAAC 60.729 55.000 0.00 0.00 46.21 3.18
142 143 0.313672 GGCAACCTGCGAAATCAACA 59.686 50.000 0.00 0.00 46.21 3.33
143 144 1.269517 GGCAACCTGCGAAATCAACAA 60.270 47.619 0.00 0.00 46.21 2.83
144 145 1.786579 GCAACCTGCGAAATCAACAAC 59.213 47.619 0.00 0.00 31.71 3.32
145 146 2.043411 CAACCTGCGAAATCAACAACG 58.957 47.619 0.00 0.00 0.00 4.10
146 147 1.588674 ACCTGCGAAATCAACAACGA 58.411 45.000 0.00 0.00 0.00 3.85
147 148 2.151202 ACCTGCGAAATCAACAACGAT 58.849 42.857 0.00 0.00 0.00 3.73
148 149 2.095768 ACCTGCGAAATCAACAACGATG 60.096 45.455 0.00 0.00 0.00 3.84
149 150 2.159430 CCTGCGAAATCAACAACGATGA 59.841 45.455 0.00 0.00 0.00 2.92
150 151 3.181507 CCTGCGAAATCAACAACGATGAT 60.182 43.478 0.00 0.00 39.15 2.45
151 152 4.033932 CCTGCGAAATCAACAACGATGATA 59.966 41.667 0.00 0.00 36.53 2.15
152 153 5.447144 CCTGCGAAATCAACAACGATGATAA 60.447 40.000 0.00 0.00 36.53 1.75
153 154 5.932661 TGCGAAATCAACAACGATGATAAA 58.067 33.333 0.00 0.00 36.53 1.40
154 155 6.550843 TGCGAAATCAACAACGATGATAAAT 58.449 32.000 0.00 0.00 36.53 1.40
155 156 6.686679 TGCGAAATCAACAACGATGATAAATC 59.313 34.615 0.00 0.00 36.53 2.17
156 157 6.907212 GCGAAATCAACAACGATGATAAATCT 59.093 34.615 0.00 0.00 36.53 2.40
157 158 8.061857 GCGAAATCAACAACGATGATAAATCTA 58.938 33.333 0.00 0.00 36.53 1.98
158 159 9.914923 CGAAATCAACAACGATGATAAATCTAA 57.085 29.630 0.00 0.00 36.53 2.10
177 178 9.638176 AAATCTAAAATGATTCATCTGGCTAGT 57.362 29.630 0.00 0.00 35.82 2.57
178 179 8.618702 ATCTAAAATGATTCATCTGGCTAGTG 57.381 34.615 0.00 0.00 0.00 2.74
179 180 7.795047 TCTAAAATGATTCATCTGGCTAGTGA 58.205 34.615 0.00 0.00 0.00 3.41
180 181 8.267183 TCTAAAATGATTCATCTGGCTAGTGAA 58.733 33.333 14.15 14.15 36.42 3.18
181 182 7.707624 AAAATGATTCATCTGGCTAGTGAAA 57.292 32.000 15.22 4.95 35.70 2.69
182 183 6.690194 AATGATTCATCTGGCTAGTGAAAC 57.310 37.500 15.22 13.61 35.70 2.78
183 184 4.183865 TGATTCATCTGGCTAGTGAAACG 58.816 43.478 15.22 0.00 45.86 3.60
184 185 3.953712 TTCATCTGGCTAGTGAAACGA 57.046 42.857 10.92 0.00 45.86 3.85
185 186 3.510388 TCATCTGGCTAGTGAAACGAG 57.490 47.619 0.00 0.00 45.86 4.18
186 187 2.166459 TCATCTGGCTAGTGAAACGAGG 59.834 50.000 0.00 0.00 45.86 4.63
187 188 1.919240 TCTGGCTAGTGAAACGAGGA 58.081 50.000 0.00 0.00 45.86 3.71
188 189 1.544691 TCTGGCTAGTGAAACGAGGAC 59.455 52.381 0.00 0.00 45.86 3.85
189 190 1.546476 CTGGCTAGTGAAACGAGGACT 59.454 52.381 0.00 0.00 45.86 3.85
190 191 1.544691 TGGCTAGTGAAACGAGGACTC 59.455 52.381 0.00 0.00 45.86 3.36
199 200 4.467232 CGAGGACTCGCACAAGAG 57.533 61.111 8.93 0.00 46.50 2.85
200 201 1.153939 CGAGGACTCGCACAAGAGG 60.154 63.158 8.93 0.00 46.50 3.69
201 202 1.216710 GAGGACTCGCACAAGAGGG 59.783 63.158 0.00 0.00 42.31 4.30
202 203 2.232298 GAGGACTCGCACAAGAGGGG 62.232 65.000 0.00 0.00 42.31 4.79
203 204 2.283529 GGACTCGCACAAGAGGGGA 61.284 63.158 0.00 0.00 42.31 4.81
204 205 1.671742 GACTCGCACAAGAGGGGAA 59.328 57.895 0.00 0.00 42.31 3.97
205 206 0.390472 GACTCGCACAAGAGGGGAAG 60.390 60.000 0.00 0.00 42.31 3.46
206 207 1.078848 CTCGCACAAGAGGGGAAGG 60.079 63.158 0.00 0.00 34.74 3.46
207 208 1.831652 CTCGCACAAGAGGGGAAGGT 61.832 60.000 0.00 0.00 34.74 3.50
208 209 1.376037 CGCACAAGAGGGGAAGGTC 60.376 63.158 0.00 0.00 0.00 3.85
209 210 1.761174 GCACAAGAGGGGAAGGTCA 59.239 57.895 0.00 0.00 0.00 4.02
210 211 0.322008 GCACAAGAGGGGAAGGTCAG 60.322 60.000 0.00 0.00 0.00 3.51
211 212 0.322008 CACAAGAGGGGAAGGTCAGC 60.322 60.000 0.00 0.00 0.00 4.26
212 213 0.474660 ACAAGAGGGGAAGGTCAGCT 60.475 55.000 0.00 0.00 0.00 4.24
213 214 0.035630 CAAGAGGGGAAGGTCAGCTG 60.036 60.000 7.63 7.63 0.00 4.24
214 215 1.204113 AAGAGGGGAAGGTCAGCTGG 61.204 60.000 15.13 0.00 0.00 4.85
215 216 1.920835 GAGGGGAAGGTCAGCTGGT 60.921 63.158 15.13 0.00 0.00 4.00
216 217 2.190488 GAGGGGAAGGTCAGCTGGTG 62.190 65.000 15.13 0.00 0.00 4.17
217 218 2.352805 GGGAAGGTCAGCTGGTGG 59.647 66.667 15.13 0.00 0.00 4.61
218 219 2.352805 GGAAGGTCAGCTGGTGGG 59.647 66.667 15.13 0.00 0.00 4.61
219 220 2.529744 GGAAGGTCAGCTGGTGGGT 61.530 63.158 15.13 0.00 0.00 4.51
220 221 1.302832 GAAGGTCAGCTGGTGGGTG 60.303 63.158 15.13 0.00 44.04 4.61
221 222 3.497884 AAGGTCAGCTGGTGGGTGC 62.498 63.158 15.13 0.00 42.57 5.01
223 224 3.958860 GTCAGCTGGTGGGTGCCT 61.959 66.667 15.13 0.00 42.57 4.75
224 225 3.957586 TCAGCTGGTGGGTGCCTG 61.958 66.667 15.13 0.00 42.57 4.85
225 226 3.957586 CAGCTGGTGGGTGCCTGA 61.958 66.667 5.57 0.00 36.61 3.86
226 227 3.177884 AGCTGGTGGGTGCCTGAA 61.178 61.111 0.00 0.00 0.00 3.02
227 228 2.985847 GCTGGTGGGTGCCTGAAC 60.986 66.667 0.00 0.00 0.00 3.18
228 229 2.669569 CTGGTGGGTGCCTGAACG 60.670 66.667 0.00 0.00 0.00 3.95
229 230 4.947147 TGGTGGGTGCCTGAACGC 62.947 66.667 0.00 0.00 0.00 4.84
231 232 4.980805 GTGGGTGCCTGAACGCGA 62.981 66.667 15.93 0.00 35.86 5.87
232 233 4.680237 TGGGTGCCTGAACGCGAG 62.680 66.667 15.93 0.00 35.86 5.03
234 235 4.373116 GGTGCCTGAACGCGAGGA 62.373 66.667 15.93 0.00 31.48 3.71
235 236 2.811317 GTGCCTGAACGCGAGGAG 60.811 66.667 15.93 4.41 31.48 3.69
236 237 2.989253 TGCCTGAACGCGAGGAGA 60.989 61.111 15.93 0.00 31.48 3.71
237 238 2.202676 GCCTGAACGCGAGGAGAG 60.203 66.667 15.93 0.36 31.48 3.20
238 239 2.492090 CCTGAACGCGAGGAGAGG 59.508 66.667 15.93 6.57 31.48 3.69
239 240 2.046864 CCTGAACGCGAGGAGAGGA 61.047 63.158 15.93 0.00 31.48 3.71
240 241 1.431440 CTGAACGCGAGGAGAGGAG 59.569 63.158 15.93 0.00 0.00 3.69
241 242 1.002502 TGAACGCGAGGAGAGGAGA 60.003 57.895 15.93 0.00 0.00 3.71
242 243 0.608308 TGAACGCGAGGAGAGGAGAA 60.608 55.000 15.93 0.00 0.00 2.87
243 244 0.099791 GAACGCGAGGAGAGGAGAAG 59.900 60.000 15.93 0.00 0.00 2.85
244 245 0.609681 AACGCGAGGAGAGGAGAAGT 60.610 55.000 15.93 0.00 0.00 3.01
245 246 0.609681 ACGCGAGGAGAGGAGAAGTT 60.610 55.000 15.93 0.00 0.00 2.66
246 247 0.528470 CGCGAGGAGAGGAGAAGTTT 59.472 55.000 0.00 0.00 0.00 2.66
247 248 1.067495 CGCGAGGAGAGGAGAAGTTTT 60.067 52.381 0.00 0.00 0.00 2.43
248 249 2.342179 GCGAGGAGAGGAGAAGTTTTG 58.658 52.381 0.00 0.00 0.00 2.44
249 250 2.342179 CGAGGAGAGGAGAAGTTTTGC 58.658 52.381 0.00 0.00 0.00 3.68
250 251 2.342179 GAGGAGAGGAGAAGTTTTGCG 58.658 52.381 0.00 0.00 0.00 4.85
251 252 0.799393 GGAGAGGAGAAGTTTTGCGC 59.201 55.000 0.00 0.00 0.00 6.09
252 253 0.440371 GAGAGGAGAAGTTTTGCGCG 59.560 55.000 0.00 0.00 0.00 6.86
253 254 0.033504 AGAGGAGAAGTTTTGCGCGA 59.966 50.000 12.10 0.00 0.00 5.87
254 255 0.865769 GAGGAGAAGTTTTGCGCGAA 59.134 50.000 12.10 5.81 0.00 4.70
255 256 1.263217 GAGGAGAAGTTTTGCGCGAAA 59.737 47.619 18.88 18.88 0.00 3.46
256 257 1.673920 AGGAGAAGTTTTGCGCGAAAA 59.326 42.857 23.97 10.17 0.00 2.29
257 258 2.098443 AGGAGAAGTTTTGCGCGAAAAA 59.902 40.909 23.97 20.99 35.27 1.94
258 259 2.467673 GGAGAAGTTTTGCGCGAAAAAG 59.532 45.455 25.03 0.00 35.27 2.27
259 260 2.459934 AGAAGTTTTGCGCGAAAAAGG 58.540 42.857 25.03 0.00 35.27 3.11
260 261 1.521006 GAAGTTTTGCGCGAAAAAGGG 59.479 47.619 25.03 0.00 35.27 3.95
261 262 0.249280 AGTTTTGCGCGAAAAAGGGG 60.249 50.000 25.03 0.00 35.27 4.79
262 263 0.249114 GTTTTGCGCGAAAAAGGGGA 60.249 50.000 25.03 0.36 35.27 4.81
263 264 0.031449 TTTTGCGCGAAAAAGGGGAG 59.969 50.000 20.99 0.00 30.25 4.30
264 265 1.801309 TTTGCGCGAAAAAGGGGAGG 61.801 55.000 10.54 0.00 0.00 4.30
265 266 2.671963 GCGCGAAAAAGGGGAGGT 60.672 61.111 12.10 0.00 0.00 3.85
266 267 2.265904 GCGCGAAAAAGGGGAGGTT 61.266 57.895 12.10 0.00 0.00 3.50
267 268 1.579429 CGCGAAAAAGGGGAGGTTG 59.421 57.895 0.00 0.00 0.00 3.77
268 269 1.862602 CGCGAAAAAGGGGAGGTTGG 61.863 60.000 0.00 0.00 0.00 3.77
269 270 1.532604 GCGAAAAAGGGGAGGTTGGG 61.533 60.000 0.00 0.00 0.00 4.12
270 271 0.898326 CGAAAAAGGGGAGGTTGGGG 60.898 60.000 0.00 0.00 0.00 4.96
271 272 1.152118 AAAAAGGGGAGGTTGGGGC 60.152 57.895 0.00 0.00 0.00 5.80
272 273 3.523374 AAAAGGGGAGGTTGGGGCG 62.523 63.158 0.00 0.00 0.00 6.13
307 308 4.052229 CGGCGAACGTCCAGTCCT 62.052 66.667 0.00 0.00 37.93 3.85
308 309 2.126031 GGCGAACGTCCAGTCCTC 60.126 66.667 0.00 0.00 0.00 3.71
309 310 2.504244 GCGAACGTCCAGTCCTCG 60.504 66.667 0.00 0.00 36.48 4.63
310 311 2.504244 CGAACGTCCAGTCCTCGC 60.504 66.667 0.00 0.00 0.00 5.03
311 312 2.649034 GAACGTCCAGTCCTCGCA 59.351 61.111 0.00 0.00 0.00 5.10
312 313 1.444553 GAACGTCCAGTCCTCGCAG 60.445 63.158 0.00 0.00 0.00 5.18
313 314 2.820767 GAACGTCCAGTCCTCGCAGG 62.821 65.000 0.00 0.00 36.46 4.85
314 315 3.062466 CGTCCAGTCCTCGCAGGA 61.062 66.667 1.25 1.25 43.43 3.86
321 322 3.473647 TCCTCGCAGGATGGCCAG 61.474 66.667 13.05 0.00 40.06 4.85
322 323 4.559063 CCTCGCAGGATGGCCAGG 62.559 72.222 13.05 0.00 37.67 4.45
323 324 3.473647 CTCGCAGGATGGCCAGGA 61.474 66.667 13.05 0.33 35.86 3.86
324 325 3.457625 CTCGCAGGATGGCCAGGAG 62.458 68.421 13.05 6.93 35.86 3.69
325 326 4.559063 CGCAGGATGGCCAGGAGG 62.559 72.222 13.05 1.79 35.86 4.30
326 327 3.092511 GCAGGATGGCCAGGAGGA 61.093 66.667 13.05 0.00 34.09 3.71
327 328 3.117452 GCAGGATGGCCAGGAGGAG 62.117 68.421 13.05 0.00 34.09 3.69
328 329 2.040043 AGGATGGCCAGGAGGAGG 60.040 66.667 13.05 0.00 36.89 4.30
329 330 2.367512 GGATGGCCAGGAGGAGGT 60.368 66.667 13.05 0.00 36.89 3.85
330 331 2.750657 GGATGGCCAGGAGGAGGTG 61.751 68.421 13.05 0.00 36.89 4.00
331 332 1.690633 GATGGCCAGGAGGAGGTGA 60.691 63.158 13.05 0.00 36.89 4.02
332 333 1.692042 ATGGCCAGGAGGAGGTGAG 60.692 63.158 13.05 0.00 36.89 3.51
333 334 3.086600 GGCCAGGAGGAGGTGAGG 61.087 72.222 0.00 0.00 36.89 3.86
334 335 3.791586 GCCAGGAGGAGGTGAGGC 61.792 72.222 0.00 0.00 36.89 4.70
335 336 3.086600 CCAGGAGGAGGTGAGGCC 61.087 72.222 0.00 0.00 36.89 5.19
336 337 3.086600 CAGGAGGAGGTGAGGCCC 61.087 72.222 0.00 0.00 38.26 5.80
337 338 4.787280 AGGAGGAGGTGAGGCCCG 62.787 72.222 0.00 0.00 38.26 6.13
339 340 3.462678 GAGGAGGTGAGGCCCGTC 61.463 72.222 0.00 0.00 38.26 4.79
340 341 4.316823 AGGAGGTGAGGCCCGTCA 62.317 66.667 0.00 0.00 38.26 4.35
341 342 3.775654 GGAGGTGAGGCCCGTCAG 61.776 72.222 0.00 0.00 38.26 3.51
342 343 3.775654 GAGGTGAGGCCCGTCAGG 61.776 72.222 0.00 0.00 38.26 3.86
343 344 4.316823 AGGTGAGGCCCGTCAGGA 62.317 66.667 0.00 0.00 41.02 3.86
354 355 3.450115 GTCAGGACGACGGGGAGG 61.450 72.222 0.00 0.00 34.19 4.30
355 356 3.975591 TCAGGACGACGGGGAGGT 61.976 66.667 0.00 0.00 0.00 3.85
356 357 2.995574 CAGGACGACGGGGAGGTT 60.996 66.667 0.00 0.00 0.00 3.50
357 358 2.679287 AGGACGACGGGGAGGTTC 60.679 66.667 0.00 0.00 0.00 3.62
358 359 4.125695 GGACGACGGGGAGGTTCG 62.126 72.222 0.00 0.00 0.00 3.95
359 360 4.125695 GACGACGGGGAGGTTCGG 62.126 72.222 0.00 0.00 0.00 4.30
362 363 3.703127 GACGGGGAGGTTCGGCTT 61.703 66.667 0.00 0.00 0.00 4.35
363 364 3.660732 GACGGGGAGGTTCGGCTTC 62.661 68.421 0.00 0.00 0.00 3.86
364 365 3.702048 CGGGGAGGTTCGGCTTCA 61.702 66.667 0.00 0.00 0.00 3.02
365 366 2.998949 GGGGAGGTTCGGCTTCAT 59.001 61.111 0.00 0.00 0.00 2.57
366 367 1.452108 GGGGAGGTTCGGCTTCATG 60.452 63.158 0.00 0.00 0.00 3.07
367 368 1.602237 GGGAGGTTCGGCTTCATGA 59.398 57.895 0.00 0.00 0.00 3.07
368 369 0.035439 GGGAGGTTCGGCTTCATGAA 60.035 55.000 8.12 8.12 0.00 2.57
369 370 1.373570 GGAGGTTCGGCTTCATGAAG 58.626 55.000 27.82 27.82 41.24 3.02
388 389 3.261933 GGTCGACGAACTCGGAGT 58.738 61.111 9.92 4.45 43.16 3.85
389 390 2.460330 GGTCGACGAACTCGGAGTA 58.540 57.895 11.71 0.00 43.16 2.59
390 391 0.373024 GGTCGACGAACTCGGAGTAG 59.627 60.000 11.71 11.11 43.16 2.57
391 392 0.373024 GTCGACGAACTCGGAGTAGG 59.627 60.000 11.71 8.79 43.16 3.18
392 393 0.036952 TCGACGAACTCGGAGTAGGT 60.037 55.000 11.71 12.00 43.16 3.08
393 394 0.373024 CGACGAACTCGGAGTAGGTC 59.627 60.000 22.02 22.02 44.95 3.85
394 395 1.446907 GACGAACTCGGAGTAGGTCA 58.553 55.000 24.81 0.00 44.95 4.02
395 396 1.397692 GACGAACTCGGAGTAGGTCAG 59.602 57.143 24.81 13.52 44.95 3.51
396 397 0.099082 CGAACTCGGAGTAGGTCAGC 59.901 60.000 11.71 0.00 32.38 4.26
397 398 0.099082 GAACTCGGAGTAGGTCAGCG 59.901 60.000 11.71 0.00 33.15 5.18
398 399 0.322277 AACTCGGAGTAGGTCAGCGA 60.322 55.000 11.71 0.00 0.00 4.93
399 400 1.025647 ACTCGGAGTAGGTCAGCGAC 61.026 60.000 9.33 0.79 0.00 5.19
400 401 0.745128 CTCGGAGTAGGTCAGCGACT 60.745 60.000 8.26 0.00 32.47 4.18
401 402 1.025113 TCGGAGTAGGTCAGCGACTG 61.025 60.000 0.00 0.00 32.47 3.51
402 403 1.139947 GGAGTAGGTCAGCGACTGC 59.860 63.158 0.00 0.00 43.24 4.40
403 404 1.139947 GAGTAGGTCAGCGACTGCC 59.860 63.158 0.00 6.97 44.31 4.85
404 405 2.184579 GTAGGTCAGCGACTGCCC 59.815 66.667 8.26 7.45 44.31 5.36
405 406 3.449227 TAGGTCAGCGACTGCCCG 61.449 66.667 8.26 0.00 44.31 6.13
414 415 4.500116 GACTGCCCGTCGAGCCTC 62.500 72.222 0.00 0.00 32.04 4.70
416 417 4.200283 CTGCCCGTCGAGCCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
417 418 4.742649 TGCCCGTCGAGCCTCTCT 62.743 66.667 0.00 0.00 0.00 3.10
418 419 2.516460 GCCCGTCGAGCCTCTCTA 60.516 66.667 0.00 0.00 0.00 2.43
419 420 2.836793 GCCCGTCGAGCCTCTCTAC 61.837 68.421 0.00 0.00 0.00 2.59
420 421 2.188161 CCCGTCGAGCCTCTCTACC 61.188 68.421 0.00 0.00 0.00 3.18
421 422 1.153127 CCGTCGAGCCTCTCTACCT 60.153 63.158 0.00 0.00 0.00 3.08
422 423 0.748729 CCGTCGAGCCTCTCTACCTT 60.749 60.000 0.00 0.00 0.00 3.50
423 424 0.658897 CGTCGAGCCTCTCTACCTTC 59.341 60.000 0.00 0.00 0.00 3.46
424 425 1.026584 GTCGAGCCTCTCTACCTTCC 58.973 60.000 0.00 0.00 0.00 3.46
425 426 0.106619 TCGAGCCTCTCTACCTTCCC 60.107 60.000 0.00 0.00 0.00 3.97
426 427 1.110518 CGAGCCTCTCTACCTTCCCC 61.111 65.000 0.00 0.00 0.00 4.81
427 428 0.032017 GAGCCTCTCTACCTTCCCCA 60.032 60.000 0.00 0.00 0.00 4.96
428 429 0.325765 AGCCTCTCTACCTTCCCCAC 60.326 60.000 0.00 0.00 0.00 4.61
429 430 1.338890 GCCTCTCTACCTTCCCCACC 61.339 65.000 0.00 0.00 0.00 4.61
430 431 0.042731 CCTCTCTACCTTCCCCACCA 59.957 60.000 0.00 0.00 0.00 4.17
431 432 1.196012 CTCTCTACCTTCCCCACCAC 58.804 60.000 0.00 0.00 0.00 4.16
432 433 0.252558 TCTCTACCTTCCCCACCACC 60.253 60.000 0.00 0.00 0.00 4.61
433 434 0.252742 CTCTACCTTCCCCACCACCT 60.253 60.000 0.00 0.00 0.00 4.00
434 435 0.195096 TCTACCTTCCCCACCACCTT 59.805 55.000 0.00 0.00 0.00 3.50
435 436 0.618981 CTACCTTCCCCACCACCTTC 59.381 60.000 0.00 0.00 0.00 3.46
436 437 0.104356 TACCTTCCCCACCACCTTCA 60.104 55.000 0.00 0.00 0.00 3.02
437 438 1.074951 CCTTCCCCACCACCTTCAC 59.925 63.158 0.00 0.00 0.00 3.18
438 439 1.074951 CTTCCCCACCACCTTCACC 59.925 63.158 0.00 0.00 0.00 4.02
439 440 2.426305 CTTCCCCACCACCTTCACCC 62.426 65.000 0.00 0.00 0.00 4.61
440 441 4.344865 CCCCACCACCTTCACCCG 62.345 72.222 0.00 0.00 0.00 5.28
443 444 3.953775 CACCACCTTCACCCGCCT 61.954 66.667 0.00 0.00 0.00 5.52
444 445 3.953775 ACCACCTTCACCCGCCTG 61.954 66.667 0.00 0.00 0.00 4.85
468 469 4.838152 CCACCGCCGTCCATCTGG 62.838 72.222 0.00 0.00 0.00 3.86
469 470 4.082523 CACCGCCGTCCATCTGGT 62.083 66.667 0.00 0.00 36.34 4.00
470 471 3.771160 ACCGCCGTCCATCTGGTC 61.771 66.667 0.00 0.00 36.34 4.02
471 472 4.530857 CCGCCGTCCATCTGGTCC 62.531 72.222 0.00 0.00 36.34 4.46
472 473 3.770040 CGCCGTCCATCTGGTCCA 61.770 66.667 0.00 0.00 36.34 4.02
473 474 2.911143 GCCGTCCATCTGGTCCAT 59.089 61.111 0.00 0.00 36.34 3.41
474 475 1.227674 GCCGTCCATCTGGTCCATC 60.228 63.158 0.00 0.00 36.34 3.51
475 476 1.068083 CCGTCCATCTGGTCCATCG 59.932 63.158 0.00 0.00 36.34 3.84
476 477 1.391933 CCGTCCATCTGGTCCATCGA 61.392 60.000 0.00 0.00 36.34 3.59
477 478 0.031314 CGTCCATCTGGTCCATCGAG 59.969 60.000 0.00 0.00 36.34 4.04
478 479 0.390860 GTCCATCTGGTCCATCGAGG 59.609 60.000 0.00 0.00 39.47 4.63
479 480 0.261696 TCCATCTGGTCCATCGAGGA 59.738 55.000 0.00 0.00 46.75 3.71
486 487 2.892640 TCCATCGAGGAAGCACGG 59.107 61.111 0.00 0.00 45.65 4.94
487 488 1.680989 TCCATCGAGGAAGCACGGA 60.681 57.895 0.00 0.00 45.65 4.69
488 489 1.519455 CCATCGAGGAAGCACGGAC 60.519 63.158 0.00 0.00 41.22 4.79
489 490 1.519455 CATCGAGGAAGCACGGACC 60.519 63.158 0.00 0.00 0.00 4.46
490 491 1.682684 ATCGAGGAAGCACGGACCT 60.683 57.895 0.00 0.00 36.68 3.85
491 492 1.668101 ATCGAGGAAGCACGGACCTC 61.668 60.000 0.00 0.00 44.50 3.85
492 493 3.377656 GAGGAAGCACGGACCTCA 58.622 61.111 0.00 0.00 46.42 3.86
493 494 1.079750 GAGGAAGCACGGACCTCAC 60.080 63.158 0.00 0.00 46.42 3.51
494 495 1.816863 GAGGAAGCACGGACCTCACA 61.817 60.000 0.00 0.00 46.42 3.58
495 496 1.070786 GGAAGCACGGACCTCACAA 59.929 57.895 0.00 0.00 0.00 3.33
496 497 0.321653 GGAAGCACGGACCTCACAAT 60.322 55.000 0.00 0.00 0.00 2.71
497 498 0.798776 GAAGCACGGACCTCACAATG 59.201 55.000 0.00 0.00 0.00 2.82
498 499 0.108585 AAGCACGGACCTCACAATGT 59.891 50.000 0.00 0.00 0.00 2.71
499 500 0.603707 AGCACGGACCTCACAATGTG 60.604 55.000 7.12 7.12 34.45 3.21
500 501 0.602638 GCACGGACCTCACAATGTGA 60.603 55.000 15.88 15.88 40.50 3.58
510 511 3.026630 TCACAATGTGAGTTCGGTCTC 57.973 47.619 12.63 1.82 37.67 3.36
511 512 2.628178 TCACAATGTGAGTTCGGTCTCT 59.372 45.455 12.63 0.00 37.67 3.10
512 513 2.733552 CACAATGTGAGTTCGGTCTCTG 59.266 50.000 7.78 2.79 35.23 3.35
513 514 2.289072 ACAATGTGAGTTCGGTCTCTGG 60.289 50.000 8.65 0.00 35.68 3.86
514 515 1.633774 ATGTGAGTTCGGTCTCTGGT 58.366 50.000 8.65 0.00 35.68 4.00
515 516 1.410004 TGTGAGTTCGGTCTCTGGTT 58.590 50.000 8.65 0.00 35.68 3.67
516 517 2.589720 TGTGAGTTCGGTCTCTGGTTA 58.410 47.619 8.65 0.00 35.68 2.85
517 518 3.162666 TGTGAGTTCGGTCTCTGGTTAT 58.837 45.455 8.65 0.00 35.68 1.89
518 519 3.056821 TGTGAGTTCGGTCTCTGGTTATG 60.057 47.826 8.65 0.00 35.68 1.90
519 520 2.496070 TGAGTTCGGTCTCTGGTTATGG 59.504 50.000 8.65 0.00 35.68 2.74
520 521 2.496470 GAGTTCGGTCTCTGGTTATGGT 59.504 50.000 1.61 0.00 0.00 3.55
521 522 3.698040 GAGTTCGGTCTCTGGTTATGGTA 59.302 47.826 1.61 0.00 0.00 3.25
522 523 3.446516 AGTTCGGTCTCTGGTTATGGTAC 59.553 47.826 0.00 0.00 0.00 3.34
523 524 2.019249 TCGGTCTCTGGTTATGGTACG 58.981 52.381 0.00 0.00 0.00 3.67
524 525 2.019249 CGGTCTCTGGTTATGGTACGA 58.981 52.381 0.00 0.00 0.00 3.43
525 526 2.223433 CGGTCTCTGGTTATGGTACGAC 60.223 54.545 0.00 0.00 0.00 4.34
526 527 2.223433 GGTCTCTGGTTATGGTACGACG 60.223 54.545 0.00 0.00 0.00 5.12
527 528 2.421424 GTCTCTGGTTATGGTACGACGT 59.579 50.000 5.52 5.52 0.00 4.34
528 529 2.421073 TCTCTGGTTATGGTACGACGTG 59.579 50.000 11.56 0.00 0.00 4.49
529 530 1.135315 TCTGGTTATGGTACGACGTGC 60.135 52.381 11.56 9.51 0.00 5.34
530 531 0.889994 TGGTTATGGTACGACGTGCT 59.110 50.000 15.69 0.00 0.00 4.40
531 532 1.273048 TGGTTATGGTACGACGTGCTT 59.727 47.619 15.69 6.66 0.00 3.91
532 533 1.922545 GGTTATGGTACGACGTGCTTC 59.077 52.381 15.69 0.88 0.00 3.86
533 534 1.580704 GTTATGGTACGACGTGCTTCG 59.419 52.381 15.69 0.00 44.87 3.79
534 535 0.523968 TATGGTACGACGTGCTTCGC 60.524 55.000 15.69 0.00 43.06 4.70
535 536 3.177249 GGTACGACGTGCTTCGCC 61.177 66.667 15.69 2.53 43.06 5.54
536 537 2.126580 GTACGACGTGCTTCGCCT 60.127 61.111 11.56 0.00 43.06 5.52
537 538 2.126618 TACGACGTGCTTCGCCTG 60.127 61.111 11.56 0.00 43.06 4.85
556 557 4.708386 CACCGCCCGGCCACTTTA 62.708 66.667 2.24 0.00 39.32 1.85
557 558 3.956314 ACCGCCCGGCCACTTTAA 61.956 61.111 2.24 0.00 39.32 1.52
558 559 3.131478 CCGCCCGGCCACTTTAAG 61.131 66.667 2.24 0.00 0.00 1.85
559 560 3.131478 CGCCCGGCCACTTTAAGG 61.131 66.667 2.24 0.00 0.00 2.69
560 561 2.353573 GCCCGGCCACTTTAAGGA 59.646 61.111 2.24 0.00 0.00 3.36
561 562 2.044555 GCCCGGCCACTTTAAGGAC 61.045 63.158 2.24 0.00 0.00 3.85
562 563 1.377229 CCCGGCCACTTTAAGGACA 59.623 57.895 2.24 0.00 31.91 4.02
563 564 0.958876 CCCGGCCACTTTAAGGACAC 60.959 60.000 2.24 0.00 31.91 3.67
564 565 0.036306 CCGGCCACTTTAAGGACACT 59.964 55.000 2.24 0.00 31.91 3.55
565 566 1.276989 CCGGCCACTTTAAGGACACTA 59.723 52.381 2.24 0.00 31.91 2.74
566 567 2.344025 CGGCCACTTTAAGGACACTAC 58.656 52.381 2.24 0.00 31.91 2.73
567 568 2.708051 GGCCACTTTAAGGACACTACC 58.292 52.381 0.00 0.00 33.02 3.18
568 569 2.617276 GGCCACTTTAAGGACACTACCC 60.617 54.545 0.00 0.00 33.02 3.69
569 570 2.617276 GCCACTTTAAGGACACTACCCC 60.617 54.545 0.00 0.00 0.00 4.95
570 571 2.354403 CCACTTTAAGGACACTACCCCG 60.354 54.545 0.00 0.00 0.00 5.73
571 572 2.301009 CACTTTAAGGACACTACCCCGT 59.699 50.000 0.00 0.00 0.00 5.28
572 573 2.974794 ACTTTAAGGACACTACCCCGTT 59.025 45.455 0.00 0.00 0.00 4.44
573 574 3.392285 ACTTTAAGGACACTACCCCGTTT 59.608 43.478 0.00 0.00 0.00 3.60
574 575 4.141413 ACTTTAAGGACACTACCCCGTTTT 60.141 41.667 0.00 0.00 0.00 2.43
575 576 2.265589 AAGGACACTACCCCGTTTTG 57.734 50.000 0.00 0.00 0.00 2.44
576 577 0.250597 AGGACACTACCCCGTTTTGC 60.251 55.000 0.00 0.00 0.00 3.68
577 578 1.239296 GGACACTACCCCGTTTTGCC 61.239 60.000 0.00 0.00 0.00 4.52
578 579 0.250597 GACACTACCCCGTTTTGCCT 60.251 55.000 0.00 0.00 0.00 4.75
579 580 0.536460 ACACTACCCCGTTTTGCCTG 60.536 55.000 0.00 0.00 0.00 4.85
580 581 0.250553 CACTACCCCGTTTTGCCTGA 60.251 55.000 0.00 0.00 0.00 3.86
581 582 0.696501 ACTACCCCGTTTTGCCTGAT 59.303 50.000 0.00 0.00 0.00 2.90
582 583 1.339727 ACTACCCCGTTTTGCCTGATC 60.340 52.381 0.00 0.00 0.00 2.92
583 584 0.988832 TACCCCGTTTTGCCTGATCT 59.011 50.000 0.00 0.00 0.00 2.75
584 585 0.609131 ACCCCGTTTTGCCTGATCTG 60.609 55.000 0.00 0.00 0.00 2.90
585 586 0.322456 CCCCGTTTTGCCTGATCTGA 60.322 55.000 0.38 0.00 0.00 3.27
586 587 0.804989 CCCGTTTTGCCTGATCTGAC 59.195 55.000 0.38 0.00 0.00 3.51
587 588 0.804989 CCGTTTTGCCTGATCTGACC 59.195 55.000 0.38 0.00 0.00 4.02
588 589 0.443869 CGTTTTGCCTGATCTGACCG 59.556 55.000 0.38 0.00 0.00 4.79
589 590 1.523758 GTTTTGCCTGATCTGACCGT 58.476 50.000 0.38 0.00 0.00 4.83
590 591 1.197721 GTTTTGCCTGATCTGACCGTG 59.802 52.381 0.38 0.00 0.00 4.94
591 592 0.321564 TTTGCCTGATCTGACCGTGG 60.322 55.000 0.38 0.00 0.00 4.94
592 593 1.191489 TTGCCTGATCTGACCGTGGA 61.191 55.000 0.38 0.00 0.00 4.02
593 594 1.153549 GCCTGATCTGACCGTGGAC 60.154 63.158 0.38 0.00 0.00 4.02
594 595 1.608717 GCCTGATCTGACCGTGGACT 61.609 60.000 0.38 0.00 0.00 3.85
595 596 0.174389 CCTGATCTGACCGTGGACTG 59.826 60.000 0.38 0.00 0.00 3.51
596 597 0.459237 CTGATCTGACCGTGGACTGC 60.459 60.000 0.00 0.00 0.00 4.40
597 598 1.153549 GATCTGACCGTGGACTGCC 60.154 63.158 0.00 0.00 0.00 4.85
598 599 1.888436 GATCTGACCGTGGACTGCCA 61.888 60.000 0.00 0.00 43.47 4.92
612 613 2.023320 GCCACGAGCGCATAAAGC 59.977 61.111 11.47 2.54 40.87 3.51
613 614 2.709475 CCACGAGCGCATAAAGCC 59.291 61.111 11.47 0.00 41.38 4.35
614 615 2.321060 CACGAGCGCATAAAGCCG 59.679 61.111 11.47 3.59 41.38 5.52
615 616 3.564027 ACGAGCGCATAAAGCCGC 61.564 61.111 11.47 0.00 41.38 6.53
616 617 4.299316 CGAGCGCATAAAGCCGCC 62.299 66.667 11.47 0.00 41.50 6.13
617 618 3.202001 GAGCGCATAAAGCCGCCA 61.202 61.111 11.47 0.00 41.50 5.69
618 619 2.516930 AGCGCATAAAGCCGCCAT 60.517 55.556 11.47 0.00 41.50 4.40
619 620 2.353839 GCGCATAAAGCCGCCATG 60.354 61.111 0.30 0.00 41.38 3.66
620 621 2.833533 GCGCATAAAGCCGCCATGA 61.834 57.895 0.30 0.00 41.38 3.07
621 622 1.951510 CGCATAAAGCCGCCATGAT 59.048 52.632 0.00 0.00 41.38 2.45
622 623 0.386352 CGCATAAAGCCGCCATGATG 60.386 55.000 0.00 0.00 41.38 3.07
623 624 0.670162 GCATAAAGCCGCCATGATGT 59.330 50.000 0.00 0.00 37.23 3.06
624 625 1.879380 GCATAAAGCCGCCATGATGTA 59.121 47.619 0.00 0.00 37.23 2.29
625 626 2.293122 GCATAAAGCCGCCATGATGTAA 59.707 45.455 0.00 0.00 37.23 2.41
628 629 1.668419 AAGCCGCCATGATGTAAGAC 58.332 50.000 0.00 0.00 0.00 3.01
1396 1651 1.165907 TTCTGTGGCCAACTTGAGCG 61.166 55.000 7.24 0.00 0.00 5.03
1486 1741 3.262405 ACAGGAAGGCGTTTCTATGGTTA 59.738 43.478 0.00 0.00 36.03 2.85
1951 2275 5.222079 TGAGTACACCAAGCTTGTTGATA 57.778 39.130 28.30 14.59 0.00 2.15
2161 2500 1.202806 TCAAGAACACCAGGAAGGCTG 60.203 52.381 0.00 0.00 43.14 4.85
2394 2744 1.897133 GGGTGTACATTTTGGGGGAAC 59.103 52.381 0.00 0.00 0.00 3.62
2821 3192 2.311463 ACCTACAGATGGATCCTGACG 58.689 52.381 14.23 1.76 35.69 4.35
2911 3327 2.272146 GAGGCGGCCCAGAATGAA 59.728 61.111 17.02 0.00 39.69 2.57
3145 6197 2.706190 ACTGTAACCTTGGTGCTCTCTT 59.294 45.455 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.592637 TGTTTCAAGCAGCGGTCATG 59.407 50.000 0.00 0.00 0.00 3.07
90 91 0.037605 GGGAGTACACGGACCACAAG 60.038 60.000 0.00 0.00 0.00 3.16
91 92 0.470456 AGGGAGTACACGGACCACAA 60.470 55.000 0.00 0.00 0.00 3.33
92 93 1.154454 AGGGAGTACACGGACCACA 59.846 57.895 0.00 0.00 0.00 4.17
93 94 1.590147 CAGGGAGTACACGGACCAC 59.410 63.158 0.00 0.00 0.00 4.16
94 95 1.608336 CCAGGGAGTACACGGACCA 60.608 63.158 0.00 0.00 0.00 4.02
95 96 3.015312 GCCAGGGAGTACACGGACC 62.015 68.421 0.00 0.00 0.00 4.46
96 97 2.577593 GCCAGGGAGTACACGGAC 59.422 66.667 0.00 0.00 0.00 4.79
97 98 3.066190 CGCCAGGGAGTACACGGA 61.066 66.667 0.00 0.00 0.00 4.69
98 99 4.143333 CCGCCAGGGAGTACACGG 62.143 72.222 0.00 0.00 38.47 4.94
99 100 3.066190 TCCGCCAGGGAGTACACG 61.066 66.667 0.00 0.00 40.94 4.49
106 107 3.691342 CGACTGTTCCGCCAGGGA 61.691 66.667 0.00 0.00 45.40 4.20
107 108 4.760047 CCGACTGTTCCGCCAGGG 62.760 72.222 0.00 0.00 36.75 4.45
109 110 4.680237 TGCCGACTGTTCCGCCAG 62.680 66.667 0.00 0.00 38.45 4.85
110 111 4.243008 TTGCCGACTGTTCCGCCA 62.243 61.111 0.00 0.00 0.00 5.69
111 112 3.723348 GTTGCCGACTGTTCCGCC 61.723 66.667 0.00 0.00 0.00 6.13
112 113 3.723348 GGTTGCCGACTGTTCCGC 61.723 66.667 0.00 0.00 0.00 5.54
113 114 2.030562 AGGTTGCCGACTGTTCCG 59.969 61.111 0.00 0.00 0.00 4.30
114 115 2.617274 GCAGGTTGCCGACTGTTCC 61.617 63.158 0.00 0.00 37.42 3.62
115 116 2.946762 GCAGGTTGCCGACTGTTC 59.053 61.111 0.00 0.00 37.42 3.18
116 117 2.933878 TTCGCAGGTTGCCGACTGTT 62.934 55.000 0.00 0.00 41.12 3.16
117 118 2.933878 TTTCGCAGGTTGCCGACTGT 62.934 55.000 0.00 0.00 41.12 3.55
118 119 1.577328 ATTTCGCAGGTTGCCGACTG 61.577 55.000 0.00 0.00 41.12 3.51
119 120 1.298859 GATTTCGCAGGTTGCCGACT 61.299 55.000 0.00 0.00 41.12 4.18
120 121 1.134694 GATTTCGCAGGTTGCCGAC 59.865 57.895 0.00 0.00 41.12 4.79
121 122 0.886938 TTGATTTCGCAGGTTGCCGA 60.887 50.000 0.00 0.00 41.12 5.54
122 123 0.729140 GTTGATTTCGCAGGTTGCCG 60.729 55.000 0.00 0.00 41.12 5.69
123 124 0.313672 TGTTGATTTCGCAGGTTGCC 59.686 50.000 0.00 0.00 41.12 4.52
124 125 1.786579 GTTGTTGATTTCGCAGGTTGC 59.213 47.619 0.00 0.00 40.69 4.17
125 126 2.043411 CGTTGTTGATTTCGCAGGTTG 58.957 47.619 0.00 0.00 0.00 3.77
126 127 1.944024 TCGTTGTTGATTTCGCAGGTT 59.056 42.857 0.00 0.00 0.00 3.50
127 128 1.588674 TCGTTGTTGATTTCGCAGGT 58.411 45.000 0.00 0.00 0.00 4.00
128 129 2.159430 TCATCGTTGTTGATTTCGCAGG 59.841 45.455 0.00 0.00 0.00 4.85
129 130 3.454042 TCATCGTTGTTGATTTCGCAG 57.546 42.857 0.00 0.00 0.00 5.18
130 131 5.538067 TTATCATCGTTGTTGATTTCGCA 57.462 34.783 0.00 0.00 35.50 5.10
131 132 6.907212 AGATTTATCATCGTTGTTGATTTCGC 59.093 34.615 0.00 0.00 35.50 4.70
132 133 9.914923 TTAGATTTATCATCGTTGTTGATTTCG 57.085 29.630 0.00 0.00 35.50 3.46
151 152 9.638176 ACTAGCCAGATGAATCATTTTAGATTT 57.362 29.630 0.00 0.00 38.30 2.17
152 153 9.064706 CACTAGCCAGATGAATCATTTTAGATT 57.935 33.333 0.00 0.00 40.75 2.40
153 154 8.435187 TCACTAGCCAGATGAATCATTTTAGAT 58.565 33.333 0.00 0.00 0.00 1.98
154 155 7.795047 TCACTAGCCAGATGAATCATTTTAGA 58.205 34.615 0.00 0.00 0.00 2.10
155 156 8.442632 TTCACTAGCCAGATGAATCATTTTAG 57.557 34.615 0.00 0.00 0.00 1.85
156 157 8.677300 GTTTCACTAGCCAGATGAATCATTTTA 58.323 33.333 0.00 0.00 32.61 1.52
157 158 7.542025 GTTTCACTAGCCAGATGAATCATTTT 58.458 34.615 0.00 0.00 32.61 1.82
158 159 6.183360 CGTTTCACTAGCCAGATGAATCATTT 60.183 38.462 0.00 0.00 32.61 2.32
159 160 5.295292 CGTTTCACTAGCCAGATGAATCATT 59.705 40.000 0.00 0.00 32.61 2.57
160 161 4.813161 CGTTTCACTAGCCAGATGAATCAT 59.187 41.667 0.00 0.00 32.61 2.45
161 162 4.081697 TCGTTTCACTAGCCAGATGAATCA 60.082 41.667 0.00 0.00 32.61 2.57
162 163 4.433615 TCGTTTCACTAGCCAGATGAATC 58.566 43.478 0.00 0.00 32.61 2.52
163 164 4.437239 CTCGTTTCACTAGCCAGATGAAT 58.563 43.478 0.00 0.00 32.61 2.57
164 165 3.368427 CCTCGTTTCACTAGCCAGATGAA 60.368 47.826 0.00 0.00 0.00 2.57
165 166 2.166459 CCTCGTTTCACTAGCCAGATGA 59.834 50.000 0.00 0.00 0.00 2.92
166 167 2.166459 TCCTCGTTTCACTAGCCAGATG 59.834 50.000 0.00 0.00 0.00 2.90
167 168 2.166664 GTCCTCGTTTCACTAGCCAGAT 59.833 50.000 0.00 0.00 0.00 2.90
168 169 1.544691 GTCCTCGTTTCACTAGCCAGA 59.455 52.381 0.00 0.00 0.00 3.86
169 170 1.546476 AGTCCTCGTTTCACTAGCCAG 59.454 52.381 0.00 0.00 0.00 4.85
170 171 1.544691 GAGTCCTCGTTTCACTAGCCA 59.455 52.381 0.00 0.00 0.00 4.75
171 172 1.467713 CGAGTCCTCGTTTCACTAGCC 60.468 57.143 8.50 0.00 46.99 3.93
172 173 1.897641 CGAGTCCTCGTTTCACTAGC 58.102 55.000 8.50 0.00 46.99 3.42
183 184 1.216710 CCCTCTTGTGCGAGTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
184 185 2.286523 CCCCTCTTGTGCGAGTCCT 61.287 63.158 0.00 0.00 0.00 3.85
185 186 1.827399 TTCCCCTCTTGTGCGAGTCC 61.827 60.000 0.00 0.00 0.00 3.85
186 187 0.390472 CTTCCCCTCTTGTGCGAGTC 60.390 60.000 0.00 0.00 0.00 3.36
187 188 1.674057 CTTCCCCTCTTGTGCGAGT 59.326 57.895 0.00 0.00 0.00 4.18
188 189 1.078848 CCTTCCCCTCTTGTGCGAG 60.079 63.158 0.00 0.00 0.00 5.03
189 190 1.827399 GACCTTCCCCTCTTGTGCGA 61.827 60.000 0.00 0.00 0.00 5.10
190 191 1.376037 GACCTTCCCCTCTTGTGCG 60.376 63.158 0.00 0.00 0.00 5.34
191 192 0.322008 CTGACCTTCCCCTCTTGTGC 60.322 60.000 0.00 0.00 0.00 4.57
192 193 0.322008 GCTGACCTTCCCCTCTTGTG 60.322 60.000 0.00 0.00 0.00 3.33
193 194 0.474660 AGCTGACCTTCCCCTCTTGT 60.475 55.000 0.00 0.00 0.00 3.16
194 195 0.035630 CAGCTGACCTTCCCCTCTTG 60.036 60.000 8.42 0.00 0.00 3.02
195 196 1.204113 CCAGCTGACCTTCCCCTCTT 61.204 60.000 17.39 0.00 0.00 2.85
196 197 1.614824 CCAGCTGACCTTCCCCTCT 60.615 63.158 17.39 0.00 0.00 3.69
197 198 1.920835 ACCAGCTGACCTTCCCCTC 60.921 63.158 17.39 0.00 0.00 4.30
198 199 2.208349 ACCAGCTGACCTTCCCCT 59.792 61.111 17.39 0.00 0.00 4.79
199 200 2.352805 CACCAGCTGACCTTCCCC 59.647 66.667 17.39 0.00 0.00 4.81
200 201 2.352805 CCACCAGCTGACCTTCCC 59.647 66.667 17.39 0.00 0.00 3.97
201 202 2.352805 CCCACCAGCTGACCTTCC 59.647 66.667 17.39 0.00 0.00 3.46
202 203 1.302832 CACCCACCAGCTGACCTTC 60.303 63.158 17.39 0.00 0.00 3.46
203 204 2.839098 CACCCACCAGCTGACCTT 59.161 61.111 17.39 0.00 0.00 3.50
204 205 3.958860 GCACCCACCAGCTGACCT 61.959 66.667 17.39 0.00 0.00 3.85
206 207 3.958860 AGGCACCCACCAGCTGAC 61.959 66.667 17.39 0.00 0.00 3.51
207 208 3.957586 CAGGCACCCACCAGCTGA 61.958 66.667 17.39 0.00 0.00 4.26
208 209 3.496309 TTCAGGCACCCACCAGCTG 62.496 63.158 6.78 6.78 0.00 4.24
209 210 3.177884 TTCAGGCACCCACCAGCT 61.178 61.111 0.00 0.00 0.00 4.24
210 211 2.985847 GTTCAGGCACCCACCAGC 60.986 66.667 0.00 0.00 0.00 4.85
211 212 2.669569 CGTTCAGGCACCCACCAG 60.670 66.667 0.00 0.00 0.00 4.00
212 213 4.947147 GCGTTCAGGCACCCACCA 62.947 66.667 0.00 0.00 0.00 4.17
214 215 4.980805 TCGCGTTCAGGCACCCAC 62.981 66.667 5.77 0.00 0.00 4.61
215 216 4.680237 CTCGCGTTCAGGCACCCA 62.680 66.667 5.77 0.00 0.00 4.51
217 218 4.373116 TCCTCGCGTTCAGGCACC 62.373 66.667 5.77 0.00 0.00 5.01
218 219 2.811317 CTCCTCGCGTTCAGGCAC 60.811 66.667 5.77 0.00 0.00 5.01
219 220 2.989253 TCTCCTCGCGTTCAGGCA 60.989 61.111 5.77 0.00 0.00 4.75
220 221 2.202676 CTCTCCTCGCGTTCAGGC 60.203 66.667 5.77 0.00 0.00 4.85
221 222 1.999071 CTCCTCTCCTCGCGTTCAGG 61.999 65.000 5.77 5.90 0.00 3.86
222 223 1.027255 TCTCCTCTCCTCGCGTTCAG 61.027 60.000 5.77 0.00 0.00 3.02
223 224 0.608308 TTCTCCTCTCCTCGCGTTCA 60.608 55.000 5.77 0.00 0.00 3.18
224 225 0.099791 CTTCTCCTCTCCTCGCGTTC 59.900 60.000 5.77 0.00 0.00 3.95
225 226 0.609681 ACTTCTCCTCTCCTCGCGTT 60.610 55.000 5.77 0.00 0.00 4.84
226 227 0.609681 AACTTCTCCTCTCCTCGCGT 60.610 55.000 5.77 0.00 0.00 6.01
227 228 0.528470 AAACTTCTCCTCTCCTCGCG 59.472 55.000 0.00 0.00 0.00 5.87
228 229 2.342179 CAAAACTTCTCCTCTCCTCGC 58.658 52.381 0.00 0.00 0.00 5.03
229 230 2.342179 GCAAAACTTCTCCTCTCCTCG 58.658 52.381 0.00 0.00 0.00 4.63
230 231 2.342179 CGCAAAACTTCTCCTCTCCTC 58.658 52.381 0.00 0.00 0.00 3.71
231 232 1.609320 GCGCAAAACTTCTCCTCTCCT 60.609 52.381 0.30 0.00 0.00 3.69
232 233 0.799393 GCGCAAAACTTCTCCTCTCC 59.201 55.000 0.30 0.00 0.00 3.71
233 234 0.440371 CGCGCAAAACTTCTCCTCTC 59.560 55.000 8.75 0.00 0.00 3.20
234 235 0.033504 TCGCGCAAAACTTCTCCTCT 59.966 50.000 8.75 0.00 0.00 3.69
235 236 0.865769 TTCGCGCAAAACTTCTCCTC 59.134 50.000 8.75 0.00 0.00 3.71
236 237 1.305201 TTTCGCGCAAAACTTCTCCT 58.695 45.000 8.75 0.00 0.00 3.69
237 238 2.113910 TTTTCGCGCAAAACTTCTCC 57.886 45.000 8.75 0.00 0.00 3.71
238 239 2.467673 CCTTTTTCGCGCAAAACTTCTC 59.532 45.455 12.58 0.00 33.47 2.87
239 240 2.459934 CCTTTTTCGCGCAAAACTTCT 58.540 42.857 12.58 0.00 33.47 2.85
240 241 1.521006 CCCTTTTTCGCGCAAAACTTC 59.479 47.619 12.58 0.00 33.47 3.01
241 242 1.566404 CCCTTTTTCGCGCAAAACTT 58.434 45.000 12.58 0.00 33.47 2.66
242 243 0.249280 CCCCTTTTTCGCGCAAAACT 60.249 50.000 12.58 0.00 33.47 2.66
243 244 0.249114 TCCCCTTTTTCGCGCAAAAC 60.249 50.000 12.58 0.00 33.47 2.43
244 245 0.031449 CTCCCCTTTTTCGCGCAAAA 59.969 50.000 15.53 15.53 31.73 2.44
245 246 1.657556 CTCCCCTTTTTCGCGCAAA 59.342 52.632 8.75 0.00 0.00 3.68
246 247 2.265182 CCTCCCCTTTTTCGCGCAA 61.265 57.895 8.75 0.00 0.00 4.85
247 248 2.671619 CCTCCCCTTTTTCGCGCA 60.672 61.111 8.75 0.00 0.00 6.09
248 249 2.265904 AACCTCCCCTTTTTCGCGC 61.266 57.895 0.00 0.00 0.00 6.86
249 250 1.579429 CAACCTCCCCTTTTTCGCG 59.421 57.895 0.00 0.00 0.00 5.87
250 251 1.532604 CCCAACCTCCCCTTTTTCGC 61.533 60.000 0.00 0.00 0.00 4.70
251 252 0.898326 CCCCAACCTCCCCTTTTTCG 60.898 60.000 0.00 0.00 0.00 3.46
252 253 1.192146 GCCCCAACCTCCCCTTTTTC 61.192 60.000 0.00 0.00 0.00 2.29
253 254 1.152118 GCCCCAACCTCCCCTTTTT 60.152 57.895 0.00 0.00 0.00 1.94
254 255 2.531326 GCCCCAACCTCCCCTTTT 59.469 61.111 0.00 0.00 0.00 2.27
255 256 3.979497 CGCCCCAACCTCCCCTTT 61.979 66.667 0.00 0.00 0.00 3.11
290 291 3.966026 GAGGACTGGACGTTCGCCG 62.966 68.421 0.00 0.00 44.03 6.46
291 292 2.126031 GAGGACTGGACGTTCGCC 60.126 66.667 0.00 0.00 0.00 5.54
292 293 2.504244 CGAGGACTGGACGTTCGC 60.504 66.667 0.00 0.00 0.00 4.70
293 294 2.504244 GCGAGGACTGGACGTTCG 60.504 66.667 0.00 0.00 0.00 3.95
294 295 1.444553 CTGCGAGGACTGGACGTTC 60.445 63.158 0.00 0.00 0.00 3.95
295 296 2.651361 CTGCGAGGACTGGACGTT 59.349 61.111 0.00 0.00 0.00 3.99
296 297 3.374402 CCTGCGAGGACTGGACGT 61.374 66.667 0.00 0.00 37.67 4.34
297 298 3.062466 TCCTGCGAGGACTGGACG 61.062 66.667 1.25 0.00 40.06 4.79
306 307 3.457625 CTCCTGGCCATCCTGCGAG 62.458 68.421 5.51 0.66 36.90 5.03
307 308 3.473647 CTCCTGGCCATCCTGCGA 61.474 66.667 5.51 0.00 0.00 5.10
308 309 4.559063 CCTCCTGGCCATCCTGCG 62.559 72.222 5.51 0.00 0.00 5.18
309 310 3.092511 TCCTCCTGGCCATCCTGC 61.093 66.667 5.51 0.00 0.00 4.85
310 311 2.450320 CCTCCTCCTGGCCATCCTG 61.450 68.421 5.51 0.00 0.00 3.86
311 312 2.040043 CCTCCTCCTGGCCATCCT 60.040 66.667 5.51 0.00 0.00 3.24
312 313 2.367512 ACCTCCTCCTGGCCATCC 60.368 66.667 5.51 0.00 0.00 3.51
313 314 1.690633 TCACCTCCTCCTGGCCATC 60.691 63.158 5.51 0.00 0.00 3.51
314 315 1.692042 CTCACCTCCTCCTGGCCAT 60.692 63.158 5.51 0.00 0.00 4.40
315 316 2.284921 CTCACCTCCTCCTGGCCA 60.285 66.667 4.71 4.71 0.00 5.36
316 317 3.086600 CCTCACCTCCTCCTGGCC 61.087 72.222 0.00 0.00 0.00 5.36
317 318 3.791586 GCCTCACCTCCTCCTGGC 61.792 72.222 0.00 0.00 0.00 4.85
318 319 3.086600 GGCCTCACCTCCTCCTGG 61.087 72.222 0.00 0.00 34.51 4.45
319 320 3.086600 GGGCCTCACCTCCTCCTG 61.087 72.222 0.84 0.00 39.10 3.86
320 321 4.787280 CGGGCCTCACCTCCTCCT 62.787 72.222 0.84 0.00 39.10 3.69
322 323 3.462678 GACGGGCCTCACCTCCTC 61.463 72.222 0.84 0.00 39.10 3.71
323 324 4.316823 TGACGGGCCTCACCTCCT 62.317 66.667 0.84 0.00 39.10 3.69
324 325 3.775654 CTGACGGGCCTCACCTCC 61.776 72.222 0.84 0.00 39.10 4.30
325 326 3.775654 CCTGACGGGCCTCACCTC 61.776 72.222 0.84 0.00 39.10 3.85
326 327 4.316823 TCCTGACGGGCCTCACCT 62.317 66.667 0.84 0.00 39.10 4.00
327 328 4.083862 GTCCTGACGGGCCTCACC 62.084 72.222 0.84 0.00 37.93 4.02
337 338 3.450115 CCTCCCCGTCGTCCTGAC 61.450 72.222 0.00 0.00 44.53 3.51
338 339 3.518552 AACCTCCCCGTCGTCCTGA 62.519 63.158 0.00 0.00 0.00 3.86
339 340 2.995574 AACCTCCCCGTCGTCCTG 60.996 66.667 0.00 0.00 0.00 3.86
340 341 2.679287 GAACCTCCCCGTCGTCCT 60.679 66.667 0.00 0.00 0.00 3.85
341 342 4.125695 CGAACCTCCCCGTCGTCC 62.126 72.222 0.00 0.00 0.00 4.79
342 343 4.125695 CCGAACCTCCCCGTCGTC 62.126 72.222 0.00 0.00 0.00 4.20
345 346 3.660732 GAAGCCGAACCTCCCCGTC 62.661 68.421 0.00 0.00 0.00 4.79
346 347 3.703127 GAAGCCGAACCTCCCCGT 61.703 66.667 0.00 0.00 0.00 5.28
347 348 3.031417 ATGAAGCCGAACCTCCCCG 62.031 63.158 0.00 0.00 0.00 5.73
348 349 1.452108 CATGAAGCCGAACCTCCCC 60.452 63.158 0.00 0.00 0.00 4.81
349 350 0.035439 TTCATGAAGCCGAACCTCCC 60.035 55.000 3.38 0.00 0.00 4.30
350 351 1.373570 CTTCATGAAGCCGAACCTCC 58.626 55.000 21.96 0.00 0.00 4.30
360 361 0.456142 TCGTCGACCGCTTCATGAAG 60.456 55.000 27.82 27.82 41.24 3.02
361 362 0.038983 TTCGTCGACCGCTTCATGAA 60.039 50.000 10.58 8.12 36.19 2.57
362 363 0.731514 GTTCGTCGACCGCTTCATGA 60.732 55.000 10.58 0.00 36.19 3.07
363 364 0.732880 AGTTCGTCGACCGCTTCATG 60.733 55.000 10.58 0.00 36.19 3.07
364 365 0.456312 GAGTTCGTCGACCGCTTCAT 60.456 55.000 10.58 0.00 36.19 2.57
365 366 1.081641 GAGTTCGTCGACCGCTTCA 60.082 57.895 10.58 0.00 36.19 3.02
366 367 3.751470 GAGTTCGTCGACCGCTTC 58.249 61.111 10.58 0.00 36.19 3.86
375 376 1.397692 CTGACCTACTCCGAGTTCGTC 59.602 57.143 6.31 12.44 37.74 4.20
376 377 1.451067 CTGACCTACTCCGAGTTCGT 58.549 55.000 6.31 3.17 37.74 3.85
377 378 0.099082 GCTGACCTACTCCGAGTTCG 59.901 60.000 6.31 0.00 39.44 3.95
378 379 0.099082 CGCTGACCTACTCCGAGTTC 59.901 60.000 6.31 0.00 0.00 3.01
379 380 0.322277 TCGCTGACCTACTCCGAGTT 60.322 55.000 6.31 0.00 0.00 3.01
380 381 1.025647 GTCGCTGACCTACTCCGAGT 61.026 60.000 6.25 6.25 0.00 4.18
381 382 0.745128 AGTCGCTGACCTACTCCGAG 60.745 60.000 5.29 0.00 32.18 4.63
382 383 1.025113 CAGTCGCTGACCTACTCCGA 61.025 60.000 1.18 0.00 32.44 4.55
383 384 1.429825 CAGTCGCTGACCTACTCCG 59.570 63.158 1.18 0.00 32.44 4.63
384 385 1.139947 GCAGTCGCTGACCTACTCC 59.860 63.158 10.46 0.00 32.44 3.85
385 386 1.139947 GGCAGTCGCTGACCTACTC 59.860 63.158 10.46 0.00 32.43 2.59
386 387 3.289525 GGCAGTCGCTGACCTACT 58.710 61.111 10.46 0.00 32.43 2.57
397 398 4.500116 GAGGCTCGACGGGCAGTC 62.500 72.222 23.22 13.73 46.16 3.51
399 400 4.200283 GAGAGGCTCGACGGGCAG 62.200 72.222 23.22 0.00 0.00 4.85
400 401 3.339738 TAGAGAGGCTCGACGGGCA 62.340 63.158 23.22 0.00 35.36 5.36
401 402 2.516460 TAGAGAGGCTCGACGGGC 60.516 66.667 12.38 12.38 35.36 6.13
402 403 2.188161 GGTAGAGAGGCTCGACGGG 61.188 68.421 9.22 0.00 37.06 5.28
403 404 0.748729 AAGGTAGAGAGGCTCGACGG 60.749 60.000 9.22 0.00 37.06 4.79
404 405 0.658897 GAAGGTAGAGAGGCTCGACG 59.341 60.000 9.22 0.00 37.06 5.12
405 406 1.026584 GGAAGGTAGAGAGGCTCGAC 58.973 60.000 9.22 8.64 35.81 4.20
406 407 0.106619 GGGAAGGTAGAGAGGCTCGA 60.107 60.000 9.22 0.00 35.36 4.04
407 408 1.110518 GGGGAAGGTAGAGAGGCTCG 61.111 65.000 9.22 0.00 35.36 5.03
408 409 0.032017 TGGGGAAGGTAGAGAGGCTC 60.032 60.000 6.34 6.34 0.00 4.70
409 410 0.325765 GTGGGGAAGGTAGAGAGGCT 60.326 60.000 0.00 0.00 0.00 4.58
410 411 1.338890 GGTGGGGAAGGTAGAGAGGC 61.339 65.000 0.00 0.00 0.00 4.70
411 412 0.042731 TGGTGGGGAAGGTAGAGAGG 59.957 60.000 0.00 0.00 0.00 3.69
412 413 1.196012 GTGGTGGGGAAGGTAGAGAG 58.804 60.000 0.00 0.00 0.00 3.20
413 414 0.252558 GGTGGTGGGGAAGGTAGAGA 60.253 60.000 0.00 0.00 0.00 3.10
414 415 0.252742 AGGTGGTGGGGAAGGTAGAG 60.253 60.000 0.00 0.00 0.00 2.43
415 416 0.195096 AAGGTGGTGGGGAAGGTAGA 59.805 55.000 0.00 0.00 0.00 2.59
416 417 0.618981 GAAGGTGGTGGGGAAGGTAG 59.381 60.000 0.00 0.00 0.00 3.18
417 418 0.104356 TGAAGGTGGTGGGGAAGGTA 60.104 55.000 0.00 0.00 0.00 3.08
418 419 1.386772 TGAAGGTGGTGGGGAAGGT 60.387 57.895 0.00 0.00 0.00 3.50
419 420 1.074951 GTGAAGGTGGTGGGGAAGG 59.925 63.158 0.00 0.00 0.00 3.46
420 421 1.074951 GGTGAAGGTGGTGGGGAAG 59.925 63.158 0.00 0.00 0.00 3.46
421 422 2.466186 GGGTGAAGGTGGTGGGGAA 61.466 63.158 0.00 0.00 0.00 3.97
422 423 2.856988 GGGTGAAGGTGGTGGGGA 60.857 66.667 0.00 0.00 0.00 4.81
423 424 4.344865 CGGGTGAAGGTGGTGGGG 62.345 72.222 0.00 0.00 0.00 4.96
426 427 3.953775 AGGCGGGTGAAGGTGGTG 61.954 66.667 0.00 0.00 0.00 4.17
427 428 3.953775 CAGGCGGGTGAAGGTGGT 61.954 66.667 0.00 0.00 0.00 4.16
451 452 4.838152 CCAGATGGACGGCGGTGG 62.838 72.222 13.24 4.06 37.39 4.61
452 453 4.082523 ACCAGATGGACGGCGGTG 62.083 66.667 13.24 0.00 38.94 4.94
453 454 3.771160 GACCAGATGGACGGCGGT 61.771 66.667 13.24 0.00 38.94 5.68
454 455 4.530857 GGACCAGATGGACGGCGG 62.531 72.222 13.24 0.00 38.94 6.13
455 456 2.978452 GATGGACCAGATGGACGGCG 62.978 65.000 4.80 4.80 38.94 6.46
456 457 1.227674 GATGGACCAGATGGACGGC 60.228 63.158 5.72 0.00 38.94 5.68
457 458 1.068083 CGATGGACCAGATGGACGG 59.932 63.158 5.72 0.00 38.94 4.79
458 459 0.031314 CTCGATGGACCAGATGGACG 59.969 60.000 5.72 3.84 38.94 4.79
459 460 0.390860 CCTCGATGGACCAGATGGAC 59.609 60.000 5.72 0.00 38.35 4.02
460 461 0.261696 TCCTCGATGGACCAGATGGA 59.738 55.000 5.72 2.33 40.56 3.41
461 462 1.069823 CTTCCTCGATGGACCAGATGG 59.930 57.143 0.00 0.00 46.14 3.51
462 463 1.539929 GCTTCCTCGATGGACCAGATG 60.540 57.143 0.00 0.00 46.14 2.90
463 464 0.755686 GCTTCCTCGATGGACCAGAT 59.244 55.000 0.00 0.00 46.14 2.90
464 465 0.614697 TGCTTCCTCGATGGACCAGA 60.615 55.000 0.00 0.00 46.14 3.86
465 466 0.460987 GTGCTTCCTCGATGGACCAG 60.461 60.000 0.00 1.91 46.14 4.00
466 467 1.596934 GTGCTTCCTCGATGGACCA 59.403 57.895 0.00 0.00 46.14 4.02
467 468 1.519455 CGTGCTTCCTCGATGGACC 60.519 63.158 3.44 0.00 46.14 4.46
468 469 1.519455 CCGTGCTTCCTCGATGGAC 60.519 63.158 3.44 0.00 46.14 4.02
469 470 1.680989 TCCGTGCTTCCTCGATGGA 60.681 57.895 0.11 0.11 44.51 3.41
470 471 1.519455 GTCCGTGCTTCCTCGATGG 60.519 63.158 0.00 0.00 37.10 3.51
471 472 1.519455 GGTCCGTGCTTCCTCGATG 60.519 63.158 0.00 0.00 0.00 3.84
472 473 1.668101 GAGGTCCGTGCTTCCTCGAT 61.668 60.000 0.00 0.00 38.37 3.59
473 474 2.282958 AGGTCCGTGCTTCCTCGA 60.283 61.111 0.00 0.00 0.00 4.04
474 475 2.182030 GAGGTCCGTGCTTCCTCG 59.818 66.667 0.00 0.00 38.37 4.63
475 476 1.079750 GTGAGGTCCGTGCTTCCTC 60.080 63.158 0.00 0.00 45.46 3.71
476 477 1.407656 TTGTGAGGTCCGTGCTTCCT 61.408 55.000 0.00 0.00 0.00 3.36
477 478 0.321653 ATTGTGAGGTCCGTGCTTCC 60.322 55.000 0.00 0.00 0.00 3.46
478 479 0.798776 CATTGTGAGGTCCGTGCTTC 59.201 55.000 0.00 0.00 0.00 3.86
479 480 0.108585 ACATTGTGAGGTCCGTGCTT 59.891 50.000 0.00 0.00 0.00 3.91
480 481 0.603707 CACATTGTGAGGTCCGTGCT 60.604 55.000 11.45 0.00 35.23 4.40
481 482 0.602638 TCACATTGTGAGGTCCGTGC 60.603 55.000 15.41 0.00 37.67 5.34
482 483 3.605013 TCACATTGTGAGGTCCGTG 57.395 52.632 15.41 0.00 37.67 4.94
490 491 2.628178 AGAGACCGAACTCACATTGTGA 59.372 45.455 18.08 18.08 40.50 3.58
491 492 2.733552 CAGAGACCGAACTCACATTGTG 59.266 50.000 10.64 10.64 39.14 3.33
492 493 2.289072 CCAGAGACCGAACTCACATTGT 60.289 50.000 10.42 0.00 39.14 2.71
493 494 2.289072 ACCAGAGACCGAACTCACATTG 60.289 50.000 10.42 1.92 39.14 2.82
494 495 1.971357 ACCAGAGACCGAACTCACATT 59.029 47.619 10.42 0.00 39.14 2.71
495 496 1.633774 ACCAGAGACCGAACTCACAT 58.366 50.000 10.42 0.00 39.14 3.21
496 497 1.410004 AACCAGAGACCGAACTCACA 58.590 50.000 10.42 0.00 39.14 3.58
497 498 3.512680 CATAACCAGAGACCGAACTCAC 58.487 50.000 10.42 0.00 39.14 3.51
498 499 2.496070 CCATAACCAGAGACCGAACTCA 59.504 50.000 10.42 0.00 39.14 3.41
499 500 2.496470 ACCATAACCAGAGACCGAACTC 59.504 50.000 0.00 0.00 37.19 3.01
500 501 2.537143 ACCATAACCAGAGACCGAACT 58.463 47.619 0.00 0.00 0.00 3.01
501 502 3.733077 CGTACCATAACCAGAGACCGAAC 60.733 52.174 0.00 0.00 0.00 3.95
502 503 2.424601 CGTACCATAACCAGAGACCGAA 59.575 50.000 0.00 0.00 0.00 4.30
503 504 2.019249 CGTACCATAACCAGAGACCGA 58.981 52.381 0.00 0.00 0.00 4.69
504 505 2.019249 TCGTACCATAACCAGAGACCG 58.981 52.381 0.00 0.00 0.00 4.79
505 506 2.223433 CGTCGTACCATAACCAGAGACC 60.223 54.545 0.00 0.00 0.00 3.85
506 507 2.421424 ACGTCGTACCATAACCAGAGAC 59.579 50.000 0.00 0.00 0.00 3.36
507 508 2.421073 CACGTCGTACCATAACCAGAGA 59.579 50.000 0.00 0.00 0.00 3.10
508 509 2.793933 CACGTCGTACCATAACCAGAG 58.206 52.381 0.00 0.00 0.00 3.35
509 510 1.135315 GCACGTCGTACCATAACCAGA 60.135 52.381 0.00 0.00 0.00 3.86
510 511 1.135199 AGCACGTCGTACCATAACCAG 60.135 52.381 0.00 0.00 0.00 4.00
511 512 0.889994 AGCACGTCGTACCATAACCA 59.110 50.000 0.00 0.00 0.00 3.67
512 513 1.922545 GAAGCACGTCGTACCATAACC 59.077 52.381 0.00 0.00 0.00 2.85
513 514 1.580704 CGAAGCACGTCGTACCATAAC 59.419 52.381 0.00 0.00 36.26 1.89
514 515 1.898938 CGAAGCACGTCGTACCATAA 58.101 50.000 0.00 0.00 36.26 1.90
515 516 3.609604 CGAAGCACGTCGTACCATA 57.390 52.632 0.00 0.00 36.26 2.74
516 517 4.470876 CGAAGCACGTCGTACCAT 57.529 55.556 0.00 0.00 36.26 3.55
539 540 4.708386 TAAAGTGGCCGGGCGGTG 62.708 66.667 24.45 0.00 37.65 4.94
540 541 3.912745 CTTAAAGTGGCCGGGCGGT 62.913 63.158 24.45 10.11 37.65 5.68
541 542 3.131478 CTTAAAGTGGCCGGGCGG 61.131 66.667 24.45 0.00 38.57 6.13
542 543 3.131478 CCTTAAAGTGGCCGGGCG 61.131 66.667 24.45 6.68 0.00 6.13
543 544 2.044555 GTCCTTAAAGTGGCCGGGC 61.045 63.158 23.42 23.42 0.00 6.13
544 545 0.958876 GTGTCCTTAAAGTGGCCGGG 60.959 60.000 2.18 0.00 0.00 5.73
545 546 0.036306 AGTGTCCTTAAAGTGGCCGG 59.964 55.000 0.00 0.00 0.00 6.13
546 547 2.344025 GTAGTGTCCTTAAAGTGGCCG 58.656 52.381 0.00 0.00 0.00 6.13
547 548 2.617276 GGGTAGTGTCCTTAAAGTGGCC 60.617 54.545 0.00 0.00 0.00 5.36
548 549 2.617276 GGGGTAGTGTCCTTAAAGTGGC 60.617 54.545 0.00 0.00 0.00 5.01
549 550 2.354403 CGGGGTAGTGTCCTTAAAGTGG 60.354 54.545 0.00 0.00 0.00 4.00
550 551 2.301009 ACGGGGTAGTGTCCTTAAAGTG 59.699 50.000 0.00 0.00 0.00 3.16
551 552 2.613129 ACGGGGTAGTGTCCTTAAAGT 58.387 47.619 0.00 0.00 0.00 2.66
552 553 3.690475 AACGGGGTAGTGTCCTTAAAG 57.310 47.619 0.00 0.00 0.00 1.85
553 554 4.136051 CAAAACGGGGTAGTGTCCTTAAA 58.864 43.478 0.00 0.00 0.00 1.52
554 555 3.742385 CAAAACGGGGTAGTGTCCTTAA 58.258 45.455 0.00 0.00 0.00 1.85
555 556 2.550639 GCAAAACGGGGTAGTGTCCTTA 60.551 50.000 0.00 0.00 0.00 2.69
556 557 1.816572 GCAAAACGGGGTAGTGTCCTT 60.817 52.381 0.00 0.00 0.00 3.36
557 558 0.250597 GCAAAACGGGGTAGTGTCCT 60.251 55.000 0.00 0.00 0.00 3.85
558 559 1.239296 GGCAAAACGGGGTAGTGTCC 61.239 60.000 0.00 0.00 0.00 4.02
559 560 0.250597 AGGCAAAACGGGGTAGTGTC 60.251 55.000 0.00 0.00 0.00 3.67
560 561 0.536460 CAGGCAAAACGGGGTAGTGT 60.536 55.000 0.00 0.00 0.00 3.55
561 562 0.250553 TCAGGCAAAACGGGGTAGTG 60.251 55.000 0.00 0.00 0.00 2.74
562 563 0.696501 ATCAGGCAAAACGGGGTAGT 59.303 50.000 0.00 0.00 0.00 2.73
563 564 1.065418 AGATCAGGCAAAACGGGGTAG 60.065 52.381 0.00 0.00 0.00 3.18
564 565 0.988832 AGATCAGGCAAAACGGGGTA 59.011 50.000 0.00 0.00 0.00 3.69
565 566 0.609131 CAGATCAGGCAAAACGGGGT 60.609 55.000 0.00 0.00 0.00 4.95
566 567 0.322456 TCAGATCAGGCAAAACGGGG 60.322 55.000 0.00 0.00 0.00 5.73
567 568 0.804989 GTCAGATCAGGCAAAACGGG 59.195 55.000 0.00 0.00 0.00 5.28
568 569 0.804989 GGTCAGATCAGGCAAAACGG 59.195 55.000 0.00 0.00 0.00 4.44
569 570 0.443869 CGGTCAGATCAGGCAAAACG 59.556 55.000 0.00 0.00 0.00 3.60
570 571 1.197721 CACGGTCAGATCAGGCAAAAC 59.802 52.381 0.00 0.00 0.00 2.43
571 572 1.522668 CACGGTCAGATCAGGCAAAA 58.477 50.000 0.00 0.00 0.00 2.44
572 573 0.321564 CCACGGTCAGATCAGGCAAA 60.322 55.000 0.00 0.00 0.00 3.68
573 574 1.191489 TCCACGGTCAGATCAGGCAA 61.191 55.000 0.00 0.00 0.00 4.52
574 575 1.609210 TCCACGGTCAGATCAGGCA 60.609 57.895 0.00 0.00 0.00 4.75
575 576 1.153549 GTCCACGGTCAGATCAGGC 60.154 63.158 0.00 0.00 0.00 4.85
576 577 0.174389 CAGTCCACGGTCAGATCAGG 59.826 60.000 0.00 0.00 0.00 3.86
577 578 0.459237 GCAGTCCACGGTCAGATCAG 60.459 60.000 0.00 0.00 0.00 2.90
578 579 1.591703 GCAGTCCACGGTCAGATCA 59.408 57.895 0.00 0.00 0.00 2.92
579 580 1.153549 GGCAGTCCACGGTCAGATC 60.154 63.158 0.00 0.00 0.00 2.75
580 581 1.913262 TGGCAGTCCACGGTCAGAT 60.913 57.895 0.00 0.00 37.47 2.90
581 582 2.523168 TGGCAGTCCACGGTCAGA 60.523 61.111 0.00 0.00 37.47 3.27
590 591 3.716539 TATGCGCTCGTGGCAGTCC 62.717 63.158 9.73 0.00 44.71 3.85
591 592 1.358725 TTTATGCGCTCGTGGCAGTC 61.359 55.000 9.73 0.00 44.71 3.51
592 593 1.361668 CTTTATGCGCTCGTGGCAGT 61.362 55.000 9.73 0.33 44.71 4.40
593 594 1.349627 CTTTATGCGCTCGTGGCAG 59.650 57.895 9.73 0.00 44.71 4.85
594 595 2.749865 GCTTTATGCGCTCGTGGCA 61.750 57.895 9.73 3.70 45.71 4.92
595 596 2.023320 GCTTTATGCGCTCGTGGC 59.977 61.111 9.73 4.11 37.64 5.01
596 597 2.709475 GGCTTTATGCGCTCGTGG 59.291 61.111 9.73 0.00 44.05 4.94
597 598 2.321060 CGGCTTTATGCGCTCGTG 59.679 61.111 9.73 0.00 44.05 4.35
598 599 3.564027 GCGGCTTTATGCGCTCGT 61.564 61.111 9.73 0.00 44.05 4.18
599 600 4.299316 GGCGGCTTTATGCGCTCG 62.299 66.667 9.73 2.47 44.05 5.03
600 601 2.546494 ATGGCGGCTTTATGCGCTC 61.546 57.895 9.73 0.00 44.05 5.03
601 602 2.516930 ATGGCGGCTTTATGCGCT 60.517 55.556 9.73 0.00 44.05 5.92
602 603 2.133742 ATCATGGCGGCTTTATGCGC 62.134 55.000 11.43 0.00 44.05 6.09
603 604 0.386352 CATCATGGCGGCTTTATGCG 60.386 55.000 11.43 0.00 44.05 4.73
604 605 0.670162 ACATCATGGCGGCTTTATGC 59.330 50.000 15.98 0.00 41.94 3.14
605 606 3.814842 TCTTACATCATGGCGGCTTTATG 59.185 43.478 11.43 13.56 0.00 1.90
606 607 3.815401 GTCTTACATCATGGCGGCTTTAT 59.185 43.478 11.43 0.00 0.00 1.40
607 608 3.202906 GTCTTACATCATGGCGGCTTTA 58.797 45.455 11.43 0.00 0.00 1.85
608 609 2.017049 GTCTTACATCATGGCGGCTTT 58.983 47.619 11.43 0.00 0.00 3.51
609 610 1.668419 GTCTTACATCATGGCGGCTT 58.332 50.000 11.43 0.00 0.00 4.35
610 611 0.530650 CGTCTTACATCATGGCGGCT 60.531 55.000 11.43 0.00 0.00 5.52
611 612 1.498865 CCGTCTTACATCATGGCGGC 61.499 60.000 0.00 0.00 41.91 6.53
612 613 2.605094 CCGTCTTACATCATGGCGG 58.395 57.895 0.00 0.00 42.35 6.13
613 614 1.202417 ACTCCGTCTTACATCATGGCG 60.202 52.381 0.00 0.00 0.00 5.69
614 615 2.604046 ACTCCGTCTTACATCATGGC 57.396 50.000 0.00 0.00 0.00 4.40
615 616 5.416083 TGTTTACTCCGTCTTACATCATGG 58.584 41.667 0.00 0.00 0.00 3.66
616 617 6.100004 ACTGTTTACTCCGTCTTACATCATG 58.900 40.000 0.00 0.00 0.00 3.07
617 618 6.282199 ACTGTTTACTCCGTCTTACATCAT 57.718 37.500 0.00 0.00 0.00 2.45
618 619 5.717078 ACTGTTTACTCCGTCTTACATCA 57.283 39.130 0.00 0.00 0.00 3.07
619 620 9.793252 TTTATACTGTTTACTCCGTCTTACATC 57.207 33.333 0.00 0.00 0.00 3.06
621 622 9.410556 GTTTTATACTGTTTACTCCGTCTTACA 57.589 33.333 0.00 0.00 0.00 2.41
622 623 9.631452 AGTTTTATACTGTTTACTCCGTCTTAC 57.369 33.333 0.00 0.00 35.19 2.34
624 625 9.631452 GTAGTTTTATACTGTTTACTCCGTCTT 57.369 33.333 0.00 0.00 37.73 3.01
625 626 9.018582 AGTAGTTTTATACTGTTTACTCCGTCT 57.981 33.333 0.00 0.00 37.73 4.18
1396 1651 0.675633 AATGCACTTGGGTTGAGCAC 59.324 50.000 0.00 0.00 38.12 4.40
1486 1741 0.912486 GCATCTAACCTGGACTGGGT 59.088 55.000 0.00 0.00 38.94 4.51
2161 2500 4.816385 TCTGTCAACTTCAACATCCTTCAC 59.184 41.667 0.00 0.00 0.00 3.18
2394 2744 5.295045 ACCAAACACTAGGTTAAACTTCACG 59.705 40.000 0.00 0.00 39.29 4.35
2821 3192 1.480137 CTCCTCTGTGACATCTCCCAC 59.520 57.143 0.00 0.00 0.00 4.61
2906 3322 3.554934 TGAACTCCTGTTGCTGTTCATT 58.445 40.909 0.00 0.00 42.25 2.57
2911 3327 1.680338 GGTTGAACTCCTGTTGCTGT 58.320 50.000 0.00 0.00 36.39 4.40
3074 6126 7.235812 AGGATACCATTAGATCAAACCCTAGAC 59.764 40.741 0.00 0.00 37.17 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.