Multiple sequence alignment - TraesCS3D01G197400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G197400 | chr3D | 100.000 | 9775 | 0 | 0 | 1 | 9775 | 204707506 | 204697732 | 0.000000e+00 | 18052.0 |
1 | TraesCS3D01G197400 | chr3D | 80.764 | 707 | 120 | 15 | 43 | 739 | 404591677 | 404592377 | 1.120000e-148 | 538.0 |
2 | TraesCS3D01G197400 | chr3D | 88.502 | 287 | 13 | 4 | 8811 | 9077 | 400122600 | 400122886 | 7.320000e-86 | 329.0 |
3 | TraesCS3D01G197400 | chr3D | 88.356 | 146 | 11 | 2 | 1331 | 1470 | 293809875 | 293809730 | 4.690000e-38 | 171.0 |
4 | TraesCS3D01G197400 | chr3D | 91.379 | 116 | 8 | 2 | 8405 | 8519 | 525636740 | 525636854 | 3.650000e-34 | 158.0 |
5 | TraesCS3D01G197400 | chr3D | 97.619 | 42 | 1 | 0 | 8251 | 8292 | 204699218 | 204699177 | 1.360000e-08 | 73.1 |
6 | TraesCS3D01G197400 | chr3D | 97.619 | 42 | 1 | 0 | 8289 | 8330 | 204699256 | 204699215 | 1.360000e-08 | 73.1 |
7 | TraesCS3D01G197400 | chr3D | 97.143 | 35 | 1 | 0 | 8155 | 8189 | 13258037 | 13258071 | 1.060000e-04 | 60.2 |
8 | TraesCS3D01G197400 | chr3B | 97.376 | 3658 | 77 | 13 | 4449 | 8097 | 299778418 | 299774771 | 0.000000e+00 | 6205.0 |
9 | TraesCS3D01G197400 | chr3B | 97.391 | 1878 | 39 | 7 | 1531 | 3404 | 299787127 | 299785256 | 0.000000e+00 | 3188.0 |
10 | TraesCS3D01G197400 | chr3B | 96.232 | 1035 | 28 | 5 | 3421 | 4453 | 299779690 | 299778665 | 0.000000e+00 | 1685.0 |
11 | TraesCS3D01G197400 | chr3B | 92.047 | 855 | 65 | 3 | 1 | 852 | 299798825 | 299797971 | 0.000000e+00 | 1199.0 |
12 | TraesCS3D01G197400 | chr3B | 97.286 | 700 | 17 | 2 | 845 | 1543 | 299795115 | 299794417 | 0.000000e+00 | 1186.0 |
13 | TraesCS3D01G197400 | chr3B | 94.475 | 543 | 13 | 8 | 8289 | 8814 | 299769753 | 299769211 | 0.000000e+00 | 821.0 |
14 | TraesCS3D01G197400 | chr3B | 88.013 | 634 | 73 | 3 | 66 | 697 | 299914007 | 299913375 | 0.000000e+00 | 747.0 |
15 | TraesCS3D01G197400 | chr3B | 89.310 | 449 | 24 | 12 | 9333 | 9758 | 299769091 | 299768644 | 8.640000e-150 | 542.0 |
16 | TraesCS3D01G197400 | chr3B | 94.581 | 203 | 8 | 2 | 8093 | 8292 | 299769914 | 299769712 | 2.650000e-80 | 311.0 |
17 | TraesCS3D01G197400 | chr3B | 97.581 | 124 | 3 | 0 | 9095 | 9218 | 299769213 | 299769090 | 7.690000e-51 | 213.0 |
18 | TraesCS3D01G197400 | chr3B | 90.000 | 110 | 10 | 1 | 8405 | 8514 | 219486261 | 219486153 | 3.680000e-29 | 141.0 |
19 | TraesCS3D01G197400 | chr3B | 89.091 | 110 | 11 | 1 | 8405 | 8514 | 217987551 | 217987443 | 1.710000e-27 | 135.0 |
20 | TraesCS3D01G197400 | chr3A | 96.336 | 2702 | 80 | 11 | 3421 | 6109 | 265178792 | 265176097 | 0.000000e+00 | 4423.0 |
21 | TraesCS3D01G197400 | chr3A | 96.409 | 2673 | 64 | 10 | 774 | 3443 | 265181455 | 265178812 | 0.000000e+00 | 4375.0 |
22 | TraesCS3D01G197400 | chr3A | 97.782 | 2209 | 46 | 1 | 6087 | 8292 | 265174658 | 265172450 | 0.000000e+00 | 3805.0 |
23 | TraesCS3D01G197400 | chr3A | 88.601 | 772 | 66 | 6 | 1 | 769 | 265184897 | 265184145 | 0.000000e+00 | 918.0 |
24 | TraesCS3D01G197400 | chr3A | 96.198 | 526 | 10 | 3 | 8289 | 8814 | 265172491 | 265171976 | 0.000000e+00 | 852.0 |
25 | TraesCS3D01G197400 | chr3A | 86.858 | 662 | 65 | 8 | 1 | 660 | 265213856 | 265213215 | 0.000000e+00 | 721.0 |
26 | TraesCS3D01G197400 | chr3A | 86.371 | 631 | 78 | 6 | 1 | 628 | 252032778 | 252032153 | 0.000000e+00 | 682.0 |
27 | TraesCS3D01G197400 | chr3A | 91.281 | 367 | 27 | 3 | 9216 | 9581 | 265168895 | 265168533 | 6.820000e-136 | 496.0 |
28 | TraesCS3D01G197400 | chr3A | 88.669 | 353 | 36 | 2 | 3421 | 3773 | 375018264 | 375017916 | 2.520000e-115 | 427.0 |
29 | TraesCS3D01G197400 | chr3A | 95.556 | 135 | 6 | 0 | 9624 | 9758 | 265167989 | 265167855 | 5.950000e-52 | 217.0 |
30 | TraesCS3D01G197400 | chr3A | 96.694 | 121 | 4 | 0 | 9100 | 9220 | 265171970 | 265171850 | 1.660000e-47 | 202.0 |
31 | TraesCS3D01G197400 | chr3A | 83.448 | 145 | 14 | 9 | 4693 | 4830 | 327966802 | 327966943 | 1.030000e-24 | 126.0 |
32 | TraesCS3D01G197400 | chr4D | 78.988 | 1699 | 285 | 39 | 5032 | 6679 | 297381345 | 297379668 | 0.000000e+00 | 1094.0 |
33 | TraesCS3D01G197400 | chr4D | 75.355 | 1688 | 348 | 44 | 5032 | 6670 | 50074342 | 50076010 | 0.000000e+00 | 750.0 |
34 | TraesCS3D01G197400 | chr4D | 76.998 | 826 | 145 | 30 | 3773 | 4585 | 215463662 | 215464455 | 1.950000e-116 | 431.0 |
35 | TraesCS3D01G197400 | chr4D | 81.447 | 318 | 24 | 15 | 9476 | 9758 | 492037262 | 492036945 | 2.750000e-55 | 228.0 |
36 | TraesCS3D01G197400 | chr7A | 78.867 | 1694 | 291 | 40 | 5032 | 6678 | 418715707 | 418714034 | 0.000000e+00 | 1083.0 |
37 | TraesCS3D01G197400 | chr7A | 87.805 | 287 | 15 | 4 | 8811 | 9077 | 342533029 | 342532743 | 1.580000e-82 | 318.0 |
38 | TraesCS3D01G197400 | chr7A | 87.582 | 153 | 14 | 1 | 1323 | 1470 | 494786824 | 494786976 | 1.310000e-38 | 172.0 |
39 | TraesCS3D01G197400 | chr7A | 86.928 | 153 | 14 | 2 | 1323 | 1470 | 451519807 | 451519958 | 6.070000e-37 | 167.0 |
40 | TraesCS3D01G197400 | chr7A | 75.216 | 347 | 65 | 19 | 4495 | 4830 | 11902915 | 11902579 | 2.850000e-30 | 145.0 |
41 | TraesCS3D01G197400 | chr7A | 72.951 | 366 | 72 | 20 | 3913 | 4264 | 132798286 | 132797934 | 1.740000e-17 | 102.0 |
42 | TraesCS3D01G197400 | chr7A | 73.898 | 295 | 58 | 13 | 4480 | 4769 | 479477995 | 479478275 | 6.250000e-17 | 100.0 |
43 | TraesCS3D01G197400 | chr6B | 78.786 | 1697 | 293 | 36 | 5032 | 6679 | 705855572 | 705857250 | 0.000000e+00 | 1077.0 |
44 | TraesCS3D01G197400 | chr6B | 74.302 | 537 | 120 | 15 | 5189 | 5721 | 79325228 | 79324706 | 2.770000e-50 | 211.0 |
45 | TraesCS3D01G197400 | chr6B | 86.928 | 153 | 14 | 3 | 1323 | 1470 | 226361514 | 226361665 | 6.070000e-37 | 167.0 |
46 | TraesCS3D01G197400 | chr6B | 90.566 | 106 | 8 | 2 | 8405 | 8509 | 121436817 | 121436921 | 1.320000e-28 | 139.0 |
47 | TraesCS3D01G197400 | chr6B | 82.203 | 118 | 18 | 2 | 4698 | 4813 | 262398923 | 262399039 | 2.250000e-16 | 99.0 |
48 | TraesCS3D01G197400 | chr7D | 78.415 | 1691 | 306 | 29 | 5032 | 6679 | 16200630 | 16202304 | 0.000000e+00 | 1046.0 |
49 | TraesCS3D01G197400 | chr7D | 72.993 | 1644 | 326 | 69 | 5081 | 6670 | 446288617 | 446287038 | 1.490000e-127 | 468.0 |
50 | TraesCS3D01G197400 | chr7D | 90.909 | 275 | 17 | 2 | 8811 | 9077 | 425263248 | 425263522 | 7.220000e-96 | 363.0 |
51 | TraesCS3D01G197400 | chr7D | 86.928 | 153 | 14 | 2 | 1323 | 1470 | 397555081 | 397554930 | 6.070000e-37 | 167.0 |
52 | TraesCS3D01G197400 | chr2A | 78.351 | 1686 | 294 | 35 | 5043 | 6679 | 558465822 | 558464159 | 0.000000e+00 | 1026.0 |
53 | TraesCS3D01G197400 | chr2A | 88.953 | 344 | 31 | 4 | 3428 | 3770 | 515951641 | 515951978 | 1.520000e-112 | 418.0 |
54 | TraesCS3D01G197400 | chr2A | 89.524 | 105 | 11 | 0 | 8973 | 9077 | 742729101 | 742728997 | 6.160000e-27 | 134.0 |
55 | TraesCS3D01G197400 | chr2B | 75.652 | 1688 | 343 | 41 | 5032 | 6670 | 12057470 | 12059138 | 0.000000e+00 | 778.0 |
56 | TraesCS3D01G197400 | chr2B | 85.185 | 108 | 15 | 1 | 5032 | 5139 | 775112282 | 775112388 | 1.040000e-19 | 110.0 |
57 | TraesCS3D01G197400 | chr2B | 73.737 | 297 | 60 | 13 | 3910 | 4194 | 455668779 | 455669069 | 6.250000e-17 | 100.0 |
58 | TraesCS3D01G197400 | chr2B | 73.401 | 297 | 61 | 13 | 3910 | 4194 | 455634173 | 455634463 | 2.910000e-15 | 95.3 |
59 | TraesCS3D01G197400 | chr2B | 90.278 | 72 | 4 | 3 | 9698 | 9768 | 132273429 | 132273360 | 3.760000e-14 | 91.6 |
60 | TraesCS3D01G197400 | chr2B | 100.000 | 39 | 0 | 0 | 8151 | 8189 | 73382198 | 73382160 | 1.360000e-08 | 73.1 |
61 | TraesCS3D01G197400 | chr2B | 93.333 | 45 | 2 | 1 | 3073 | 3116 | 565370701 | 565370745 | 2.280000e-06 | 65.8 |
62 | TraesCS3D01G197400 | chr1A | 78.953 | 974 | 174 | 17 | 5731 | 6679 | 490507252 | 490506285 | 1.380000e-177 | 634.0 |
63 | TraesCS3D01G197400 | chr4B | 77.717 | 1095 | 177 | 43 | 3773 | 4836 | 237042999 | 237044057 | 8.390000e-170 | 608.0 |
64 | TraesCS3D01G197400 | chr4B | 86.111 | 108 | 14 | 1 | 5033 | 5139 | 445280294 | 445280401 | 2.230000e-21 | 115.0 |
65 | TraesCS3D01G197400 | chr4B | 90.909 | 44 | 1 | 3 | 1994 | 2036 | 111797999 | 111798040 | 1.000000e-03 | 56.5 |
66 | TraesCS3D01G197400 | chrUn | 78.320 | 964 | 151 | 31 | 5745 | 6679 | 108690430 | 108689496 | 3.960000e-158 | 569.0 |
67 | TraesCS3D01G197400 | chrUn | 87.986 | 283 | 24 | 4 | 8805 | 9077 | 250778124 | 250778406 | 9.470000e-85 | 326.0 |
68 | TraesCS3D01G197400 | chrUn | 78.889 | 90 | 12 | 4 | 4108 | 4194 | 479509971 | 479510056 | 5.000000e-03 | 54.7 |
69 | TraesCS3D01G197400 | chrUn | 94.286 | 35 | 1 | 1 | 1652 | 1685 | 51219266 | 51219300 | 1.800000e-02 | 52.8 |
70 | TraesCS3D01G197400 | chr4A | 80.401 | 699 | 126 | 11 | 39 | 731 | 291328392 | 291329085 | 1.130000e-143 | 521.0 |
71 | TraesCS3D01G197400 | chr4A | 87.778 | 90 | 9 | 2 | 8430 | 8519 | 571713392 | 571713479 | 4.830000e-18 | 104.0 |
72 | TraesCS3D01G197400 | chr4A | 100.000 | 28 | 0 | 0 | 3793 | 3820 | 191422783 | 191422810 | 1.800000e-02 | 52.8 |
73 | TraesCS3D01G197400 | chr2D | 79.361 | 751 | 141 | 13 | 2 | 742 | 327067107 | 327066361 | 5.230000e-142 | 516.0 |
74 | TraesCS3D01G197400 | chr2D | 89.766 | 342 | 29 | 3 | 3429 | 3770 | 380416529 | 380416864 | 5.420000e-117 | 433.0 |
75 | TraesCS3D01G197400 | chr2D | 88.000 | 350 | 38 | 1 | 3421 | 3770 | 442879091 | 442879436 | 2.540000e-110 | 411.0 |
76 | TraesCS3D01G197400 | chr2D | 76.978 | 278 | 52 | 11 | 4561 | 4830 | 355149027 | 355149300 | 2.200000e-31 | 148.0 |
77 | TraesCS3D01G197400 | chr2D | 76.027 | 292 | 50 | 16 | 4553 | 4828 | 148951633 | 148951346 | 6.160000e-27 | 134.0 |
78 | TraesCS3D01G197400 | chr2D | 91.667 | 72 | 3 | 3 | 9698 | 9768 | 80622150 | 80622081 | 8.080000e-16 | 97.1 |
79 | TraesCS3D01G197400 | chr5D | 81.173 | 648 | 108 | 11 | 49 | 684 | 139465430 | 139464785 | 8.760000e-140 | 508.0 |
80 | TraesCS3D01G197400 | chr5D | 88.000 | 350 | 36 | 3 | 3423 | 3770 | 386861707 | 386862052 | 9.140000e-110 | 409.0 |
81 | TraesCS3D01G197400 | chr5D | 88.703 | 239 | 17 | 4 | 8813 | 9042 | 565832684 | 565832447 | 5.780000e-72 | 283.0 |
82 | TraesCS3D01G197400 | chr5D | 75.649 | 308 | 53 | 16 | 3794 | 4091 | 120329952 | 120329657 | 6.160000e-27 | 134.0 |
83 | TraesCS3D01G197400 | chr5D | 92.308 | 52 | 0 | 3 | 8148 | 8197 | 491432560 | 491432609 | 4.900000e-08 | 71.3 |
84 | TraesCS3D01G197400 | chr5A | 75.752 | 1031 | 226 | 18 | 5203 | 6223 | 168866150 | 168867166 | 1.900000e-136 | 497.0 |
85 | TraesCS3D01G197400 | chr5A | 88.000 | 350 | 38 | 1 | 3421 | 3770 | 366234815 | 366235160 | 2.540000e-110 | 411.0 |
86 | TraesCS3D01G197400 | chr5A | 89.113 | 248 | 19 | 2 | 8838 | 9077 | 259489298 | 259489051 | 1.600000e-77 | 302.0 |
87 | TraesCS3D01G197400 | chr5A | 74.737 | 380 | 73 | 12 | 5032 | 5392 | 641559217 | 641558842 | 2.200000e-31 | 148.0 |
88 | TraesCS3D01G197400 | chr5A | 79.654 | 231 | 13 | 20 | 9490 | 9686 | 672500244 | 672500474 | 1.710000e-27 | 135.0 |
89 | TraesCS3D01G197400 | chr5A | 91.566 | 83 | 6 | 1 | 9677 | 9758 | 672501887 | 672501969 | 8.020000e-21 | 113.0 |
90 | TraesCS3D01G197400 | chr5B | 74.003 | 1304 | 270 | 39 | 5043 | 6299 | 649412974 | 649411693 | 5.350000e-127 | 466.0 |
91 | TraesCS3D01G197400 | chr5B | 88.286 | 350 | 35 | 2 | 3423 | 3770 | 464890240 | 464890585 | 1.960000e-111 | 414.0 |
92 | TraesCS3D01G197400 | chr5B | 72.687 | 227 | 49 | 11 | 3919 | 4135 | 245307180 | 245306957 | 8.200000e-06 | 63.9 |
93 | TraesCS3D01G197400 | chr7B | 73.287 | 1445 | 309 | 50 | 5081 | 6476 | 462792234 | 462790818 | 8.950000e-125 | 459.0 |
94 | TraesCS3D01G197400 | chr7B | 88.276 | 145 | 12 | 1 | 1331 | 1470 | 102234475 | 102234331 | 1.690000e-37 | 169.0 |
95 | TraesCS3D01G197400 | chr7B | 82.759 | 116 | 17 | 2 | 4716 | 4828 | 239359284 | 239359399 | 6.250000e-17 | 100.0 |
96 | TraesCS3D01G197400 | chr6D | 91.697 | 277 | 15 | 2 | 8809 | 9077 | 411871525 | 411871249 | 2.580000e-100 | 377.0 |
97 | TraesCS3D01G197400 | chr6D | 86.486 | 111 | 12 | 2 | 4705 | 4813 | 149384081 | 149384190 | 1.720000e-22 | 119.0 |
98 | TraesCS3D01G197400 | chr6D | 74.886 | 219 | 54 | 1 | 5538 | 5756 | 2618916 | 2619133 | 2.250000e-16 | 99.0 |
99 | TraesCS3D01G197400 | chr1D | 88.645 | 273 | 23 | 2 | 8813 | 9077 | 43265016 | 43264744 | 9.470000e-85 | 326.0 |
100 | TraesCS3D01G197400 | chr1D | 72.451 | 824 | 186 | 27 | 5629 | 6431 | 341183003 | 341183806 | 9.880000e-55 | 226.0 |
101 | TraesCS3D01G197400 | chr1D | 81.319 | 182 | 28 | 6 | 4653 | 4830 | 388660912 | 388660733 | 1.020000e-29 | 143.0 |
102 | TraesCS3D01G197400 | chr1B | 87.546 | 273 | 26 | 2 | 8813 | 9077 | 553971946 | 553972218 | 9.530000e-80 | 309.0 |
103 | TraesCS3D01G197400 | chr1B | 73.711 | 795 | 169 | 23 | 5043 | 5812 | 491078764 | 491079543 | 3.480000e-69 | 274.0 |
104 | TraesCS3D01G197400 | chr1B | 87.162 | 148 | 14 | 1 | 1328 | 1470 | 687090938 | 687091085 | 7.860000e-36 | 163.0 |
105 | TraesCS3D01G197400 | chr1B | 90.991 | 111 | 7 | 3 | 8407 | 8516 | 268650331 | 268650223 | 7.910000e-31 | 147.0 |
106 | TraesCS3D01G197400 | chr6A | 71.984 | 489 | 112 | 17 | 5212 | 5689 | 45770780 | 45771254 | 4.800000e-23 | 121.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G197400 | chr3D | 204697732 | 204707506 | 9774 | True | 18052.00 | 18052 | 100.000000 | 1 | 9775 | 1 | chr3D.!!$R1 | 9774 |
1 | TraesCS3D01G197400 | chr3D | 404591677 | 404592377 | 700 | False | 538.00 | 538 | 80.764000 | 43 | 739 | 1 | chr3D.!!$F3 | 696 |
2 | TraesCS3D01G197400 | chr3B | 299774771 | 299779690 | 4919 | True | 3945.00 | 6205 | 96.804000 | 3421 | 8097 | 2 | chr3B.!!$R6 | 4676 |
3 | TraesCS3D01G197400 | chr3B | 299785256 | 299787127 | 1871 | True | 3188.00 | 3188 | 97.391000 | 1531 | 3404 | 1 | chr3B.!!$R3 | 1873 |
4 | TraesCS3D01G197400 | chr3B | 299794417 | 299798825 | 4408 | True | 1192.50 | 1199 | 94.666500 | 1 | 1543 | 2 | chr3B.!!$R7 | 1542 |
5 | TraesCS3D01G197400 | chr3B | 299913375 | 299914007 | 632 | True | 747.00 | 747 | 88.013000 | 66 | 697 | 1 | chr3B.!!$R4 | 631 |
6 | TraesCS3D01G197400 | chr3B | 299768644 | 299769914 | 1270 | True | 471.75 | 821 | 93.986750 | 8093 | 9758 | 4 | chr3B.!!$R5 | 1665 |
7 | TraesCS3D01G197400 | chr3A | 265167855 | 265184897 | 17042 | True | 1911.00 | 4423 | 94.857125 | 1 | 9758 | 8 | chr3A.!!$R4 | 9757 |
8 | TraesCS3D01G197400 | chr3A | 265213215 | 265213856 | 641 | True | 721.00 | 721 | 86.858000 | 1 | 660 | 1 | chr3A.!!$R2 | 659 |
9 | TraesCS3D01G197400 | chr3A | 252032153 | 252032778 | 625 | True | 682.00 | 682 | 86.371000 | 1 | 628 | 1 | chr3A.!!$R1 | 627 |
10 | TraesCS3D01G197400 | chr4D | 297379668 | 297381345 | 1677 | True | 1094.00 | 1094 | 78.988000 | 5032 | 6679 | 1 | chr4D.!!$R1 | 1647 |
11 | TraesCS3D01G197400 | chr4D | 50074342 | 50076010 | 1668 | False | 750.00 | 750 | 75.355000 | 5032 | 6670 | 1 | chr4D.!!$F1 | 1638 |
12 | TraesCS3D01G197400 | chr4D | 215463662 | 215464455 | 793 | False | 431.00 | 431 | 76.998000 | 3773 | 4585 | 1 | chr4D.!!$F2 | 812 |
13 | TraesCS3D01G197400 | chr7A | 418714034 | 418715707 | 1673 | True | 1083.00 | 1083 | 78.867000 | 5032 | 6678 | 1 | chr7A.!!$R4 | 1646 |
14 | TraesCS3D01G197400 | chr6B | 705855572 | 705857250 | 1678 | False | 1077.00 | 1077 | 78.786000 | 5032 | 6679 | 1 | chr6B.!!$F4 | 1647 |
15 | TraesCS3D01G197400 | chr6B | 79324706 | 79325228 | 522 | True | 211.00 | 211 | 74.302000 | 5189 | 5721 | 1 | chr6B.!!$R1 | 532 |
16 | TraesCS3D01G197400 | chr7D | 16200630 | 16202304 | 1674 | False | 1046.00 | 1046 | 78.415000 | 5032 | 6679 | 1 | chr7D.!!$F1 | 1647 |
17 | TraesCS3D01G197400 | chr7D | 446287038 | 446288617 | 1579 | True | 468.00 | 468 | 72.993000 | 5081 | 6670 | 1 | chr7D.!!$R2 | 1589 |
18 | TraesCS3D01G197400 | chr2A | 558464159 | 558465822 | 1663 | True | 1026.00 | 1026 | 78.351000 | 5043 | 6679 | 1 | chr2A.!!$R1 | 1636 |
19 | TraesCS3D01G197400 | chr2B | 12057470 | 12059138 | 1668 | False | 778.00 | 778 | 75.652000 | 5032 | 6670 | 1 | chr2B.!!$F1 | 1638 |
20 | TraesCS3D01G197400 | chr1A | 490506285 | 490507252 | 967 | True | 634.00 | 634 | 78.953000 | 5731 | 6679 | 1 | chr1A.!!$R1 | 948 |
21 | TraesCS3D01G197400 | chr4B | 237042999 | 237044057 | 1058 | False | 608.00 | 608 | 77.717000 | 3773 | 4836 | 1 | chr4B.!!$F2 | 1063 |
22 | TraesCS3D01G197400 | chrUn | 108689496 | 108690430 | 934 | True | 569.00 | 569 | 78.320000 | 5745 | 6679 | 1 | chrUn.!!$R1 | 934 |
23 | TraesCS3D01G197400 | chr4A | 291328392 | 291329085 | 693 | False | 521.00 | 521 | 80.401000 | 39 | 731 | 1 | chr4A.!!$F2 | 692 |
24 | TraesCS3D01G197400 | chr2D | 327066361 | 327067107 | 746 | True | 516.00 | 516 | 79.361000 | 2 | 742 | 1 | chr2D.!!$R3 | 740 |
25 | TraesCS3D01G197400 | chr5D | 139464785 | 139465430 | 645 | True | 508.00 | 508 | 81.173000 | 49 | 684 | 1 | chr5D.!!$R2 | 635 |
26 | TraesCS3D01G197400 | chr5A | 168866150 | 168867166 | 1016 | False | 497.00 | 497 | 75.752000 | 5203 | 6223 | 1 | chr5A.!!$F1 | 1020 |
27 | TraesCS3D01G197400 | chr5B | 649411693 | 649412974 | 1281 | True | 466.00 | 466 | 74.003000 | 5043 | 6299 | 1 | chr5B.!!$R2 | 1256 |
28 | TraesCS3D01G197400 | chr7B | 462790818 | 462792234 | 1416 | True | 459.00 | 459 | 73.287000 | 5081 | 6476 | 1 | chr7B.!!$R2 | 1395 |
29 | TraesCS3D01G197400 | chr1D | 341183003 | 341183806 | 803 | False | 226.00 | 226 | 72.451000 | 5629 | 6431 | 1 | chr1D.!!$F1 | 802 |
30 | TraesCS3D01G197400 | chr1B | 491078764 | 491079543 | 779 | False | 274.00 | 274 | 73.711000 | 5043 | 5812 | 1 | chr1B.!!$F1 | 769 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
490 | 500 | 0.040646 | TCGAACCTTGAGCCCTCCTA | 59.959 | 55.000 | 0.00 | 0.0 | 0.00 | 2.94 | F |
1563 | 7131 | 0.413037 | TGATTGGGCAATTGGAGGGT | 59.587 | 50.000 | 7.72 | 0.0 | 0.00 | 4.34 | F |
2813 | 8385 | 0.977395 | AGTGTACAGCTTGGGGACTC | 59.023 | 55.000 | 0.00 | 0.0 | 0.00 | 3.36 | F |
3674 | 9292 | 1.813753 | GCACGCTTTAGCCATCCGA | 60.814 | 57.895 | 0.00 | 0.0 | 37.91 | 4.55 | F |
4468 | 10345 | 0.653636 | TCGCACACCGAAGAAAACAC | 59.346 | 50.000 | 0.00 | 0.0 | 44.21 | 3.32 | F |
5723 | 11648 | 1.229082 | TAGCCACTTGTCCTCCCGT | 60.229 | 57.895 | 0.00 | 0.0 | 0.00 | 5.28 | F |
6186 | 13585 | 1.068588 | GACCAACTTGCCTTTCCAACC | 59.931 | 52.381 | 0.00 | 0.0 | 0.00 | 3.77 | F |
6564 | 13981 | 2.987413 | TAGCCAACATTTCTGCAACG | 57.013 | 45.000 | 0.00 | 0.0 | 0.00 | 4.10 | F |
7278 | 14698 | 5.248477 | AGTCTATAAACTGCTCCAAAGACCA | 59.752 | 40.000 | 0.00 | 0.0 | 34.10 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2009 | 7578 | 1.822371 | CCCCCGTTCCAAAATGTAAGG | 59.178 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 | R |
3487 | 9103 | 4.688021 | AGAGTTGGTTGCGAGATCTTATC | 58.312 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 | R |
4184 | 9810 | 0.179018 | AGTGTTGTCTGAGCAACCCC | 60.179 | 55.000 | 14.13 | 7.45 | 45.80 | 4.95 | R |
4939 | 10836 | 0.762418 | ACCGACCACTGTTCATGGAA | 59.238 | 50.000 | 0.00 | 0.00 | 39.87 | 3.53 | R |
5747 | 11673 | 0.373716 | GCTTTGGTACCTTCGCGATG | 59.626 | 55.000 | 10.88 | 13.11 | 0.00 | 3.84 | R |
7521 | 14941 | 0.880718 | GCCCTAGGAATTTCCGCTCG | 60.881 | 60.000 | 11.48 | 1.25 | 42.75 | 5.03 | R |
7899 | 15319 | 0.478507 | AGCCCTTGCAACAACCTAGT | 59.521 | 50.000 | 0.00 | 0.00 | 41.13 | 2.57 | R |
7986 | 15406 | 0.539986 | TTGCGGGGAACATAGAGACC | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 | R |
8974 | 16415 | 0.322366 | AGAGAAAAGGAGCCAGCTGC | 60.322 | 55.000 | 8.66 | 2.51 | 41.71 | 5.25 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
79 | 82 | 3.060866 | GCGGGGCGGATATCTCTT | 58.939 | 61.111 | 2.05 | 0.00 | 0.00 | 2.85 |
127 | 131 | 4.796231 | GGTGACGCGAGCCACGAT | 62.796 | 66.667 | 15.93 | 0.00 | 45.77 | 3.73 |
226 | 232 | 0.786435 | AGGTTCCCAAAGCAATCCCT | 59.214 | 50.000 | 0.00 | 0.00 | 35.29 | 4.20 |
259 | 265 | 2.080336 | TTGGTGGAAGAAGGCCAGGG | 62.080 | 60.000 | 5.01 | 0.00 | 35.77 | 4.45 |
283 | 290 | 3.710722 | CTCGCCAGGGCAGAGGTT | 61.711 | 66.667 | 18.27 | 0.00 | 42.06 | 3.50 |
337 | 345 | 1.959042 | CTATGGCAAGCGAAGACCAT | 58.041 | 50.000 | 0.00 | 0.00 | 44.88 | 3.55 |
347 | 355 | 4.744795 | AGCGAAGACCATCTTTAGTCAT | 57.255 | 40.909 | 0.00 | 0.00 | 36.73 | 3.06 |
353 | 361 | 7.429633 | CGAAGACCATCTTTAGTCATGATAGT | 58.570 | 38.462 | 0.00 | 0.00 | 36.73 | 2.12 |
385 | 394 | 2.489751 | CCCTTCGAAATTGGCCGC | 59.510 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
490 | 500 | 0.040646 | TCGAACCTTGAGCCCTCCTA | 59.959 | 55.000 | 0.00 | 0.00 | 0.00 | 2.94 |
684 | 703 | 1.601166 | GGCGTAGTTTGGTGGAGTTT | 58.399 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
705 | 724 | 1.525995 | CGCACACACCCCAGAGTTT | 60.526 | 57.895 | 0.00 | 0.00 | 0.00 | 2.66 |
709 | 728 | 2.586425 | CACACACCCCAGAGTTTGAAT | 58.414 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
776 | 796 | 9.189156 | CATCTAGGGAGGTGAAAATGATTTTTA | 57.811 | 33.333 | 4.46 | 0.00 | 35.62 | 1.52 |
783 | 3487 | 8.753133 | GGAGGTGAAAATGATTTTTAGAAGGAT | 58.247 | 33.333 | 4.46 | 0.00 | 35.20 | 3.24 |
806 | 3510 | 4.836125 | ACTGCTTGATTTGTGATTTCGT | 57.164 | 36.364 | 0.00 | 0.00 | 0.00 | 3.85 |
835 | 3539 | 4.459337 | GCAGAACCCAATAAAAGTGTAGCT | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
842 | 3546 | 4.022416 | CCAATAAAAGTGTAGCTGTGCCAA | 60.022 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
1097 | 6664 | 3.729524 | TCTCTTCCCCATCTCTCCTCATA | 59.270 | 47.826 | 0.00 | 0.00 | 0.00 | 2.15 |
1164 | 6731 | 2.749441 | GTTGAGGGGAGCAGCAGC | 60.749 | 66.667 | 0.00 | 0.00 | 42.56 | 5.25 |
1295 | 6862 | 7.816640 | TCTTGTGCTTTCTTGGTATATTGTTC | 58.183 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1511 | 7079 | 7.437267 | CCGTATGTAGTCCATTAGTTTAGTTGG | 59.563 | 40.741 | 0.00 | 0.00 | 34.86 | 3.77 |
1562 | 7130 | 1.570803 | TTGATTGGGCAATTGGAGGG | 58.429 | 50.000 | 7.72 | 0.00 | 0.00 | 4.30 |
1563 | 7131 | 0.413037 | TGATTGGGCAATTGGAGGGT | 59.587 | 50.000 | 7.72 | 0.00 | 0.00 | 4.34 |
1564 | 7132 | 1.203288 | TGATTGGGCAATTGGAGGGTT | 60.203 | 47.619 | 7.72 | 0.00 | 0.00 | 4.11 |
1565 | 7133 | 1.908619 | GATTGGGCAATTGGAGGGTTT | 59.091 | 47.619 | 7.72 | 0.00 | 0.00 | 3.27 |
1594 | 7162 | 4.260170 | GAGGATCTGCACTTGAATGTCTT | 58.740 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1730 | 7298 | 3.065786 | CGCTACAATCAAGCCATTCATGT | 59.934 | 43.478 | 0.00 | 0.00 | 36.60 | 3.21 |
1912 | 7481 | 2.431419 | TCACTACCGTGTCAACCTTTGA | 59.569 | 45.455 | 0.00 | 0.00 | 41.89 | 2.69 |
2027 | 7596 | 1.203758 | GGCCTTACATTTTGGAACGGG | 59.796 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
2348 | 7920 | 8.771920 | AATGTATCTTGTACAGTCGAAAATGA | 57.228 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2813 | 8385 | 0.977395 | AGTGTACAGCTTGGGGACTC | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3111 | 8684 | 5.593095 | GGGTGGGTGAATAGGAGATTTTTAC | 59.407 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3478 | 9094 | 4.717279 | AACAAGTTGGGGTAAGCTAGAA | 57.283 | 40.909 | 7.96 | 0.00 | 0.00 | 2.10 |
3487 | 9103 | 4.254492 | GGGGTAAGCTAGAACTGAAACAG | 58.746 | 47.826 | 0.00 | 0.00 | 37.52 | 3.16 |
3669 | 9287 | 2.394930 | TTATCAGCACGCTTTAGCCA | 57.605 | 45.000 | 0.00 | 0.00 | 37.91 | 4.75 |
3674 | 9292 | 1.813753 | GCACGCTTTAGCCATCCGA | 60.814 | 57.895 | 0.00 | 0.00 | 37.91 | 4.55 |
4018 | 9640 | 5.680556 | ACATACTTGTTCTTCGGCATTCCG | 61.681 | 45.833 | 0.00 | 0.00 | 45.12 | 4.30 |
4070 | 9693 | 2.890945 | TCCGTCTTGAAGATCACAGTCA | 59.109 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
4140 | 9763 | 4.141937 | TGCTCAATCACTTCGGCTATTAGT | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
4184 | 9810 | 2.093235 | CACTCAAAGGCTTAGGGAGGAG | 60.093 | 54.545 | 20.57 | 13.95 | 0.00 | 3.69 |
4346 | 9972 | 3.846180 | CCAGCTGGCACAACAGTT | 58.154 | 55.556 | 22.33 | 0.00 | 40.59 | 3.16 |
4431 | 10057 | 4.948004 | TCAGCGAGGACTTTGACTAAGATA | 59.052 | 41.667 | 3.56 | 0.00 | 37.30 | 1.98 |
4468 | 10345 | 0.653636 | TCGCACACCGAAGAAAACAC | 59.346 | 50.000 | 0.00 | 0.00 | 44.21 | 3.32 |
4477 | 10356 | 1.519408 | GAAGAAAACACCCTGCGCTA | 58.481 | 50.000 | 9.73 | 0.00 | 0.00 | 4.26 |
4703 | 10598 | 9.823647 | TTTAATGTTTCCTTCACATTTTTAGCA | 57.176 | 25.926 | 3.75 | 0.00 | 41.19 | 3.49 |
4902 | 10799 | 3.915346 | ATGTTGGGGTAAAAACCTCCT | 57.085 | 42.857 | 0.00 | 0.00 | 0.00 | 3.69 |
4939 | 10836 | 3.275617 | TGCTCCAACTGTGTACAAACT | 57.724 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
5247 | 11164 | 1.904852 | ATGCGCGAACTTGCAGTGAG | 61.905 | 55.000 | 12.10 | 0.00 | 45.52 | 3.51 |
5722 | 11647 | 1.517832 | CTAGCCACTTGTCCTCCCG | 59.482 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
5723 | 11648 | 1.229082 | TAGCCACTTGTCCTCCCGT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 5.28 |
5747 | 11673 | 6.740411 | AATCAAATCTCTGAGCTGTCTTTC | 57.260 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
5825 | 11754 | 4.325972 | CAAAAATGCAAACCCATAGGCTT | 58.674 | 39.130 | 0.00 | 0.00 | 36.11 | 4.35 |
6186 | 13585 | 1.068588 | GACCAACTTGCCTTTCCAACC | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
6213 | 13612 | 5.363101 | TGATCATTTCTCTATGCGCTCTTT | 58.637 | 37.500 | 9.73 | 0.00 | 0.00 | 2.52 |
6564 | 13981 | 2.987413 | TAGCCAACATTTCTGCAACG | 57.013 | 45.000 | 0.00 | 0.00 | 0.00 | 4.10 |
7058 | 14478 | 6.807230 | GCTATGGGTTAGTGATTGATACTACG | 59.193 | 42.308 | 0.00 | 0.00 | 30.81 | 3.51 |
7278 | 14698 | 5.248477 | AGTCTATAAACTGCTCCAAAGACCA | 59.752 | 40.000 | 0.00 | 0.00 | 34.10 | 4.02 |
7293 | 14713 | 7.638444 | TCCAAAGACCACTGGATTTCATATTA | 58.362 | 34.615 | 0.71 | 0.00 | 36.79 | 0.98 |
7364 | 14784 | 5.717078 | ATCCGATTTTAATCAGCATGCAT | 57.283 | 34.783 | 21.98 | 1.94 | 35.11 | 3.96 |
7743 | 15163 | 6.569127 | TTTCAGGTAAACATGGCCTCTATA | 57.431 | 37.500 | 3.32 | 0.00 | 0.00 | 1.31 |
7899 | 15319 | 7.685481 | TGAGAATCCACTTCATTGTAGGTTTA | 58.315 | 34.615 | 0.00 | 0.00 | 36.24 | 2.01 |
7991 | 15411 | 4.287766 | AGGTTGTGTTGGATTAGGTCTC | 57.712 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
8097 | 15517 | 7.382218 | GGATCTAGTTTGTCATTTGTGTTTTGG | 59.618 | 37.037 | 0.00 | 0.00 | 0.00 | 3.28 |
8126 | 15549 | 3.263937 | TCATGAGTGATCATGTGGACCAA | 59.736 | 43.478 | 15.69 | 0.00 | 45.53 | 3.67 |
8164 | 15587 | 7.989947 | AGAAAGTATATTGTTACTCCCTCCA | 57.010 | 36.000 | 0.00 | 0.00 | 31.19 | 3.86 |
8291 | 15714 | 9.669353 | AATCGTTATCTGATTATCAAAATGTGC | 57.331 | 29.630 | 0.00 | 0.00 | 34.41 | 4.57 |
8292 | 15715 | 8.207521 | TCGTTATCTGATTATCAAAATGTGCA | 57.792 | 30.769 | 0.00 | 0.00 | 0.00 | 4.57 |
8293 | 15716 | 8.839343 | TCGTTATCTGATTATCAAAATGTGCAT | 58.161 | 29.630 | 0.00 | 0.00 | 0.00 | 3.96 |
8294 | 15717 | 8.898792 | CGTTATCTGATTATCAAAATGTGCATG | 58.101 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
8295 | 15718 | 9.740239 | GTTATCTGATTATCAAAATGTGCATGT | 57.260 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
8296 | 15719 | 9.955208 | TTATCTGATTATCAAAATGTGCATGTC | 57.045 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
8297 | 15720 | 6.798482 | TCTGATTATCAAAATGTGCATGTCC | 58.202 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
8298 | 15721 | 5.580661 | TGATTATCAAAATGTGCATGTCCG | 58.419 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
8299 | 15722 | 5.356470 | TGATTATCAAAATGTGCATGTCCGA | 59.644 | 36.000 | 0.00 | 0.00 | 0.00 | 4.55 |
8300 | 15723 | 3.770263 | ATCAAAATGTGCATGTCCGAG | 57.230 | 42.857 | 0.00 | 0.00 | 0.00 | 4.63 |
8301 | 15724 | 2.503331 | TCAAAATGTGCATGTCCGAGT | 58.497 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
8302 | 15725 | 3.669536 | TCAAAATGTGCATGTCCGAGTA | 58.330 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
8303 | 15726 | 4.068599 | TCAAAATGTGCATGTCCGAGTAA | 58.931 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
8304 | 15727 | 4.517075 | TCAAAATGTGCATGTCCGAGTAAA | 59.483 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
8305 | 15728 | 5.182950 | TCAAAATGTGCATGTCCGAGTAAAT | 59.817 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
8306 | 15729 | 4.882671 | AATGTGCATGTCCGAGTAAATC | 57.117 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
8427 | 15850 | 4.070716 | GCTTGCTATCTATGTGCCAGAAT | 58.929 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
8441 | 15864 | 2.936993 | GCCAGAATCATGAGTTGGTCGT | 60.937 | 50.000 | 18.82 | 0.00 | 0.00 | 4.34 |
8473 | 15896 | 2.468915 | GTTTCACCTCTAGCCTACCCT | 58.531 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
8478 | 15901 | 4.050037 | TCACCTCTAGCCTACCCTAACTA | 58.950 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
8479 | 15902 | 4.668812 | TCACCTCTAGCCTACCCTAACTAT | 59.331 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
8480 | 15903 | 5.135705 | TCACCTCTAGCCTACCCTAACTATT | 59.864 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
8814 | 16255 | 6.121776 | AGTGATTGGGTATTGTGTGTTAGA | 57.878 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
8816 | 16257 | 4.941263 | TGATTGGGTATTGTGTGTTAGAGC | 59.059 | 41.667 | 0.00 | 0.00 | 0.00 | 4.09 |
8818 | 16259 | 4.568072 | TGGGTATTGTGTGTTAGAGCAT | 57.432 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
8819 | 16260 | 4.260985 | TGGGTATTGTGTGTTAGAGCATG | 58.739 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
8820 | 16261 | 3.627577 | GGGTATTGTGTGTTAGAGCATGG | 59.372 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
8821 | 16262 | 4.261801 | GGTATTGTGTGTTAGAGCATGGT | 58.738 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
8822 | 16263 | 4.700213 | GGTATTGTGTGTTAGAGCATGGTT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
8823 | 16264 | 5.878116 | GGTATTGTGTGTTAGAGCATGGTTA | 59.122 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
8824 | 16265 | 6.373216 | GGTATTGTGTGTTAGAGCATGGTTAA | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
8825 | 16266 | 7.067008 | GGTATTGTGTGTTAGAGCATGGTTAAT | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
8826 | 16267 | 9.104965 | GTATTGTGTGTTAGAGCATGGTTAATA | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
8827 | 16268 | 7.609760 | TTGTGTGTTAGAGCATGGTTAATAG | 57.390 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
8828 | 16269 | 6.707290 | TGTGTGTTAGAGCATGGTTAATAGT | 58.293 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
8829 | 16270 | 7.842982 | TGTGTGTTAGAGCATGGTTAATAGTA | 58.157 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
8830 | 16271 | 7.762615 | TGTGTGTTAGAGCATGGTTAATAGTAC | 59.237 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
8831 | 16272 | 7.762615 | GTGTGTTAGAGCATGGTTAATAGTACA | 59.237 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
8832 | 16273 | 8.315482 | TGTGTTAGAGCATGGTTAATAGTACAA | 58.685 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
8833 | 16274 | 8.601476 | GTGTTAGAGCATGGTTAATAGTACAAC | 58.399 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
8834 | 16275 | 7.767198 | TGTTAGAGCATGGTTAATAGTACAACC | 59.233 | 37.037 | 0.00 | 6.00 | 43.78 | 3.77 |
8854 | 16295 | 3.995199 | CCAACTGATGGCTATATGACGT | 58.005 | 45.455 | 0.00 | 0.00 | 43.80 | 4.34 |
8855 | 16296 | 4.380531 | CCAACTGATGGCTATATGACGTT | 58.619 | 43.478 | 0.00 | 0.00 | 43.80 | 3.99 |
8856 | 16297 | 4.212004 | CCAACTGATGGCTATATGACGTTG | 59.788 | 45.833 | 0.00 | 0.00 | 43.80 | 4.10 |
8857 | 16298 | 3.393800 | ACTGATGGCTATATGACGTTGC | 58.606 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
8858 | 16299 | 2.738846 | CTGATGGCTATATGACGTTGCC | 59.261 | 50.000 | 0.00 | 0.00 | 43.49 | 4.52 |
8864 | 16305 | 4.503910 | GGCTATATGACGTTGCCATATCA | 58.496 | 43.478 | 10.53 | 0.00 | 42.79 | 2.15 |
8865 | 16306 | 5.118990 | GGCTATATGACGTTGCCATATCAT | 58.881 | 41.667 | 10.53 | 0.31 | 42.79 | 2.45 |
8866 | 16307 | 5.235186 | GGCTATATGACGTTGCCATATCATC | 59.765 | 44.000 | 10.53 | 3.69 | 42.79 | 2.92 |
8867 | 16308 | 6.045318 | GCTATATGACGTTGCCATATCATCT | 58.955 | 40.000 | 10.53 | 0.00 | 38.02 | 2.90 |
8868 | 16309 | 7.203218 | GCTATATGACGTTGCCATATCATCTA | 58.797 | 38.462 | 10.53 | 0.00 | 38.02 | 1.98 |
8869 | 16310 | 7.869937 | GCTATATGACGTTGCCATATCATCTAT | 59.130 | 37.037 | 10.53 | 0.00 | 38.02 | 1.98 |
8872 | 16313 | 5.410924 | TGACGTTGCCATATCATCTATAGC | 58.589 | 41.667 | 0.00 | 0.00 | 0.00 | 2.97 |
8873 | 16314 | 4.759782 | ACGTTGCCATATCATCTATAGCC | 58.240 | 43.478 | 0.00 | 0.00 | 0.00 | 3.93 |
8874 | 16315 | 4.222810 | ACGTTGCCATATCATCTATAGCCA | 59.777 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
8875 | 16316 | 5.178061 | CGTTGCCATATCATCTATAGCCAA | 58.822 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
8876 | 16317 | 5.063944 | CGTTGCCATATCATCTATAGCCAAC | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 3.77 |
8877 | 16318 | 6.176183 | GTTGCCATATCATCTATAGCCAACT | 58.824 | 40.000 | 0.00 | 0.00 | 30.92 | 3.16 |
8878 | 16319 | 6.378661 | TGCCATATCATCTATAGCCAACTT | 57.621 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
8879 | 16320 | 6.782986 | TGCCATATCATCTATAGCCAACTTT | 58.217 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
8880 | 16321 | 6.656270 | TGCCATATCATCTATAGCCAACTTTG | 59.344 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
8881 | 16322 | 6.656693 | GCCATATCATCTATAGCCAACTTTGT | 59.343 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
8882 | 16323 | 7.824289 | GCCATATCATCTATAGCCAACTTTGTA | 59.176 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
8883 | 16324 | 9.376075 | CCATATCATCTATAGCCAACTTTGTAG | 57.624 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
8884 | 16325 | 8.877779 | CATATCATCTATAGCCAACTTTGTAGC | 58.122 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
8885 | 16326 | 5.611374 | TCATCTATAGCCAACTTTGTAGCC | 58.389 | 41.667 | 0.00 | 0.00 | 0.00 | 3.93 |
8886 | 16327 | 5.366768 | TCATCTATAGCCAACTTTGTAGCCT | 59.633 | 40.000 | 0.00 | 0.00 | 0.00 | 4.58 |
8887 | 16328 | 5.693769 | TCTATAGCCAACTTTGTAGCCTT | 57.306 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
8888 | 16329 | 5.671493 | TCTATAGCCAACTTTGTAGCCTTC | 58.329 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
8889 | 16330 | 2.656947 | AGCCAACTTTGTAGCCTTCA | 57.343 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
8890 | 16331 | 2.944129 | AGCCAACTTTGTAGCCTTCAA | 58.056 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
8891 | 16332 | 2.887152 | AGCCAACTTTGTAGCCTTCAAG | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
8892 | 16333 | 2.623416 | GCCAACTTTGTAGCCTTCAAGT | 59.377 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
8893 | 16334 | 3.818773 | GCCAACTTTGTAGCCTTCAAGTA | 59.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
8894 | 16335 | 4.459337 | GCCAACTTTGTAGCCTTCAAGTAT | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
8895 | 16336 | 5.646360 | GCCAACTTTGTAGCCTTCAAGTATA | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
8896 | 16337 | 6.403309 | GCCAACTTTGTAGCCTTCAAGTATAC | 60.403 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
8897 | 16338 | 6.879458 | CCAACTTTGTAGCCTTCAAGTATACT | 59.121 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
8898 | 16339 | 8.038944 | CCAACTTTGTAGCCTTCAAGTATACTA | 58.961 | 37.037 | 5.65 | 0.00 | 0.00 | 1.82 |
8899 | 16340 | 9.088512 | CAACTTTGTAGCCTTCAAGTATACTAG | 57.911 | 37.037 | 5.65 | 0.00 | 0.00 | 2.57 |
8900 | 16341 | 8.363761 | ACTTTGTAGCCTTCAAGTATACTAGT | 57.636 | 34.615 | 5.65 | 0.00 | 0.00 | 2.57 |
8901 | 16342 | 9.471702 | ACTTTGTAGCCTTCAAGTATACTAGTA | 57.528 | 33.333 | 5.65 | 4.77 | 0.00 | 1.82 |
8904 | 16345 | 9.690913 | TTGTAGCCTTCAAGTATACTAGTAAGA | 57.309 | 33.333 | 6.70 | 0.00 | 0.00 | 2.10 |
8905 | 16346 | 9.863650 | TGTAGCCTTCAAGTATACTAGTAAGAT | 57.136 | 33.333 | 6.70 | 5.59 | 0.00 | 2.40 |
8908 | 16349 | 9.863650 | AGCCTTCAAGTATACTAGTAAGATACA | 57.136 | 33.333 | 6.70 | 0.00 | 0.00 | 2.29 |
8921 | 16362 | 9.191479 | ACTAGTAAGATACAAAGATGTGCTACT | 57.809 | 33.333 | 0.00 | 0.00 | 40.84 | 2.57 |
8923 | 16364 | 8.934507 | AGTAAGATACAAAGATGTGCTACTTC | 57.065 | 34.615 | 0.00 | 0.00 | 40.84 | 3.01 |
8924 | 16365 | 8.531982 | AGTAAGATACAAAGATGTGCTACTTCA | 58.468 | 33.333 | 0.00 | 0.00 | 40.84 | 3.02 |
8925 | 16366 | 9.319143 | GTAAGATACAAAGATGTGCTACTTCAT | 57.681 | 33.333 | 0.00 | 0.00 | 40.84 | 2.57 |
8926 | 16367 | 8.798859 | AAGATACAAAGATGTGCTACTTCATT | 57.201 | 30.769 | 0.00 | 0.00 | 40.84 | 2.57 |
8927 | 16368 | 9.890629 | AAGATACAAAGATGTGCTACTTCATTA | 57.109 | 29.630 | 0.00 | 0.00 | 40.84 | 1.90 |
8928 | 16369 | 9.890629 | AGATACAAAGATGTGCTACTTCATTAA | 57.109 | 29.630 | 0.00 | 0.00 | 40.84 | 1.40 |
8932 | 16373 | 9.448438 | ACAAAGATGTGCTACTTCATTAATACA | 57.552 | 29.630 | 0.00 | 0.00 | 38.69 | 2.29 |
8935 | 16376 | 8.613060 | AGATGTGCTACTTCATTAATACATGG | 57.387 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
8936 | 16377 | 6.618287 | TGTGCTACTTCATTAATACATGGC | 57.382 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
8937 | 16378 | 5.530915 | TGTGCTACTTCATTAATACATGGCC | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 5.36 |
8938 | 16379 | 5.048713 | GTGCTACTTCATTAATACATGGCCC | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 5.80 |
8939 | 16380 | 5.070001 | GCTACTTCATTAATACATGGCCCA | 58.930 | 41.667 | 0.00 | 0.00 | 0.00 | 5.36 |
8940 | 16381 | 5.048713 | GCTACTTCATTAATACATGGCCCAC | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 4.61 |
8941 | 16382 | 4.215109 | ACTTCATTAATACATGGCCCACC | 58.785 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
8942 | 16383 | 4.079212 | ACTTCATTAATACATGGCCCACCT | 60.079 | 41.667 | 0.00 | 0.00 | 36.63 | 4.00 |
8943 | 16384 | 4.098914 | TCATTAATACATGGCCCACCTC | 57.901 | 45.455 | 0.00 | 0.00 | 36.63 | 3.85 |
8944 | 16385 | 3.157087 | CATTAATACATGGCCCACCTCC | 58.843 | 50.000 | 0.00 | 0.00 | 36.63 | 4.30 |
8945 | 16386 | 1.145571 | TAATACATGGCCCACCTCCC | 58.854 | 55.000 | 0.00 | 0.00 | 36.63 | 4.30 |
8946 | 16387 | 0.923729 | AATACATGGCCCACCTCCCA | 60.924 | 55.000 | 0.00 | 0.00 | 36.63 | 4.37 |
8947 | 16388 | 1.645402 | ATACATGGCCCACCTCCCAC | 61.645 | 60.000 | 0.00 | 0.00 | 36.63 | 4.61 |
8948 | 16389 | 2.781258 | TACATGGCCCACCTCCCACT | 62.781 | 60.000 | 0.00 | 0.00 | 36.63 | 4.00 |
8949 | 16390 | 3.017581 | ATGGCCCACCTCCCACTC | 61.018 | 66.667 | 0.00 | 0.00 | 36.63 | 3.51 |
8950 | 16391 | 3.889525 | ATGGCCCACCTCCCACTCA | 62.890 | 63.158 | 0.00 | 0.00 | 36.63 | 3.41 |
8951 | 16392 | 4.035102 | GGCCCACCTCCCACTCAC | 62.035 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
8952 | 16393 | 3.249189 | GCCCACCTCCCACTCACA | 61.249 | 66.667 | 0.00 | 0.00 | 0.00 | 3.58 |
8953 | 16394 | 2.606587 | GCCCACCTCCCACTCACAT | 61.607 | 63.158 | 0.00 | 0.00 | 0.00 | 3.21 |
8954 | 16395 | 1.271840 | GCCCACCTCCCACTCACATA | 61.272 | 60.000 | 0.00 | 0.00 | 0.00 | 2.29 |
8955 | 16396 | 0.833287 | CCCACCTCCCACTCACATAG | 59.167 | 60.000 | 0.00 | 0.00 | 0.00 | 2.23 |
8956 | 16397 | 1.573108 | CCACCTCCCACTCACATAGT | 58.427 | 55.000 | 0.00 | 0.00 | 39.81 | 2.12 |
8967 | 16408 | 3.632333 | ACTCACATAGTGCCTAGTAGCA | 58.368 | 45.455 | 0.00 | 0.00 | 41.46 | 3.49 |
8986 | 16427 | 4.719106 | GTGCTGCAGCTGGCTCCT | 62.719 | 66.667 | 36.61 | 0.00 | 45.15 | 3.69 |
8987 | 16428 | 3.962694 | TGCTGCAGCTGGCTCCTT | 61.963 | 61.111 | 36.61 | 0.00 | 45.15 | 3.36 |
8988 | 16429 | 2.675772 | GCTGCAGCTGGCTCCTTT | 60.676 | 61.111 | 31.33 | 0.00 | 45.15 | 3.11 |
8989 | 16430 | 2.273912 | GCTGCAGCTGGCTCCTTTT | 61.274 | 57.895 | 31.33 | 0.00 | 45.15 | 2.27 |
8990 | 16431 | 1.881602 | CTGCAGCTGGCTCCTTTTC | 59.118 | 57.895 | 17.12 | 0.00 | 45.15 | 2.29 |
8991 | 16432 | 0.608582 | CTGCAGCTGGCTCCTTTTCT | 60.609 | 55.000 | 17.12 | 0.00 | 45.15 | 2.52 |
8992 | 16433 | 0.607489 | TGCAGCTGGCTCCTTTTCTC | 60.607 | 55.000 | 17.12 | 0.00 | 45.15 | 2.87 |
8993 | 16434 | 0.322366 | GCAGCTGGCTCCTTTTCTCT | 60.322 | 55.000 | 17.12 | 0.00 | 40.25 | 3.10 |
8994 | 16435 | 1.736612 | CAGCTGGCTCCTTTTCTCTC | 58.263 | 55.000 | 5.57 | 0.00 | 0.00 | 3.20 |
8995 | 16436 | 1.278699 | CAGCTGGCTCCTTTTCTCTCT | 59.721 | 52.381 | 5.57 | 0.00 | 0.00 | 3.10 |
8996 | 16437 | 1.554617 | AGCTGGCTCCTTTTCTCTCTC | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
8997 | 16438 | 1.406751 | GCTGGCTCCTTTTCTCTCTCC | 60.407 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
8998 | 16439 | 2.187100 | CTGGCTCCTTTTCTCTCTCCT | 58.813 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
8999 | 16440 | 2.168313 | CTGGCTCCTTTTCTCTCTCCTC | 59.832 | 54.545 | 0.00 | 0.00 | 0.00 | 3.71 |
9000 | 16441 | 2.225496 | TGGCTCCTTTTCTCTCTCCTCT | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
9001 | 16442 | 2.837591 | GGCTCCTTTTCTCTCTCCTCTT | 59.162 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
9002 | 16443 | 3.118775 | GGCTCCTTTTCTCTCTCCTCTTC | 60.119 | 52.174 | 0.00 | 0.00 | 0.00 | 2.87 |
9003 | 16444 | 3.769300 | GCTCCTTTTCTCTCTCCTCTTCT | 59.231 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
9004 | 16445 | 4.142160 | GCTCCTTTTCTCTCTCCTCTTCTC | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
9005 | 16446 | 5.264395 | CTCCTTTTCTCTCTCCTCTTCTCT | 58.736 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
9006 | 16447 | 5.650283 | TCCTTTTCTCTCTCCTCTTCTCTT | 58.350 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
9007 | 16448 | 5.714806 | TCCTTTTCTCTCTCCTCTTCTCTTC | 59.285 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
9008 | 16449 | 5.105351 | CCTTTTCTCTCTCCTCTTCTCTTCC | 60.105 | 48.000 | 0.00 | 0.00 | 0.00 | 3.46 |
9009 | 16450 | 3.662759 | TCTCTCTCCTCTTCTCTTCCC | 57.337 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
9010 | 16451 | 3.197983 | TCTCTCTCCTCTTCTCTTCCCT | 58.802 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
9011 | 16452 | 3.202151 | TCTCTCTCCTCTTCTCTTCCCTC | 59.798 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
9012 | 16453 | 2.243736 | TCTCTCCTCTTCTCTTCCCTCC | 59.756 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
9013 | 16454 | 2.003830 | TCTCCTCTTCTCTTCCCTCCA | 58.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
9014 | 16455 | 2.107366 | CTCCTCTTCTCTTCCCTCCAC | 58.893 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
9015 | 16456 | 0.820871 | CCTCTTCTCTTCCCTCCACG | 59.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
9016 | 16457 | 0.820871 | CTCTTCTCTTCCCTCCACGG | 59.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
9017 | 16458 | 1.219393 | CTTCTCTTCCCTCCACGGC | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
9018 | 16459 | 1.535444 | TTCTCTTCCCTCCACGGCA | 60.535 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
9019 | 16460 | 1.544825 | TTCTCTTCCCTCCACGGCAG | 61.545 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
9020 | 16461 | 3.672295 | CTCTTCCCTCCACGGCAGC | 62.672 | 68.421 | 0.00 | 0.00 | 0.00 | 5.25 |
9021 | 16462 | 4.020617 | CTTCCCTCCACGGCAGCA | 62.021 | 66.667 | 0.00 | 0.00 | 0.00 | 4.41 |
9022 | 16463 | 3.965539 | CTTCCCTCCACGGCAGCAG | 62.966 | 68.421 | 0.00 | 0.00 | 0.00 | 4.24 |
9024 | 16465 | 4.020617 | CCCTCCACGGCAGCAGAA | 62.021 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
9025 | 16466 | 2.032528 | CCTCCACGGCAGCAGAAA | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 2.52 |
9026 | 16467 | 1.600636 | CCTCCACGGCAGCAGAAAA | 60.601 | 57.895 | 0.00 | 0.00 | 0.00 | 2.29 |
9027 | 16468 | 1.172180 | CCTCCACGGCAGCAGAAAAA | 61.172 | 55.000 | 0.00 | 0.00 | 0.00 | 1.94 |
9028 | 16469 | 0.883833 | CTCCACGGCAGCAGAAAAAT | 59.116 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
9029 | 16470 | 1.270550 | CTCCACGGCAGCAGAAAAATT | 59.729 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
9030 | 16471 | 2.487762 | CTCCACGGCAGCAGAAAAATTA | 59.512 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
9031 | 16472 | 3.088532 | TCCACGGCAGCAGAAAAATTAT | 58.911 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
9032 | 16473 | 4.265893 | TCCACGGCAGCAGAAAAATTATA | 58.734 | 39.130 | 0.00 | 0.00 | 0.00 | 0.98 |
9033 | 16474 | 4.887071 | TCCACGGCAGCAGAAAAATTATAT | 59.113 | 37.500 | 0.00 | 0.00 | 0.00 | 0.86 |
9034 | 16475 | 5.359576 | TCCACGGCAGCAGAAAAATTATATT | 59.640 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
9035 | 16476 | 6.042143 | CCACGGCAGCAGAAAAATTATATTT | 58.958 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
9036 | 16477 | 6.534793 | CCACGGCAGCAGAAAAATTATATTTT | 59.465 | 34.615 | 0.00 | 0.00 | 35.29 | 1.82 |
9037 | 16478 | 7.704472 | CCACGGCAGCAGAAAAATTATATTTTA | 59.296 | 33.333 | 0.00 | 0.00 | 32.85 | 1.52 |
9038 | 16479 | 9.081997 | CACGGCAGCAGAAAAATTATATTTTAA | 57.918 | 29.630 | 0.00 | 0.00 | 32.85 | 1.52 |
9039 | 16480 | 9.816354 | ACGGCAGCAGAAAAATTATATTTTAAT | 57.184 | 25.926 | 0.00 | 0.00 | 32.85 | 1.40 |
9053 | 16494 | 9.813826 | ATTATATTTTAATCCTTACAGGCTGCT | 57.186 | 29.630 | 15.89 | 4.57 | 34.61 | 4.24 |
9054 | 16495 | 9.640952 | TTATATTTTAATCCTTACAGGCTGCTT | 57.359 | 29.630 | 15.89 | 0.00 | 34.61 | 3.91 |
9056 | 16497 | 6.753107 | TTTTAATCCTTACAGGCTGCTTAC | 57.247 | 37.500 | 15.89 | 0.00 | 34.61 | 2.34 |
9057 | 16498 | 5.429681 | TTAATCCTTACAGGCTGCTTACA | 57.570 | 39.130 | 15.89 | 0.00 | 34.61 | 2.41 |
9058 | 16499 | 4.510167 | AATCCTTACAGGCTGCTTACAT | 57.490 | 40.909 | 15.89 | 0.00 | 34.61 | 2.29 |
9059 | 16500 | 5.630415 | AATCCTTACAGGCTGCTTACATA | 57.370 | 39.130 | 15.89 | 0.00 | 34.61 | 2.29 |
9060 | 16501 | 5.630415 | ATCCTTACAGGCTGCTTACATAA | 57.370 | 39.130 | 15.89 | 3.64 | 34.61 | 1.90 |
9061 | 16502 | 5.023533 | TCCTTACAGGCTGCTTACATAAG | 57.976 | 43.478 | 15.89 | 13.07 | 34.61 | 1.73 |
9062 | 16503 | 4.683400 | TCCTTACAGGCTGCTTACATAAGC | 60.683 | 45.833 | 15.89 | 15.34 | 45.81 | 3.09 |
9063 | 16504 | 6.862324 | TCCTTACAGGCTGCTTACATAAGCT | 61.862 | 44.000 | 21.11 | 5.81 | 45.80 | 3.74 |
9064 | 16505 | 8.267398 | TCCTTACAGGCTGCTTACATAAGCTT | 62.267 | 42.308 | 21.11 | 3.48 | 45.80 | 3.74 |
9065 | 16506 | 8.994226 | TCCTTACAGGCTGCTTACATAAGCTTA | 61.994 | 40.741 | 21.11 | 8.99 | 45.80 | 3.09 |
9085 | 16526 | 8.207350 | AGCTTATTATACTTGCTTATCTCCCA | 57.793 | 34.615 | 0.00 | 0.00 | 0.00 | 4.37 |
9086 | 16527 | 8.097662 | AGCTTATTATACTTGCTTATCTCCCAC | 58.902 | 37.037 | 0.00 | 0.00 | 0.00 | 4.61 |
9087 | 16528 | 8.097662 | GCTTATTATACTTGCTTATCTCCCACT | 58.902 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
9088 | 16529 | 9.646427 | CTTATTATACTTGCTTATCTCCCACTC | 57.354 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
9089 | 16530 | 7.863901 | ATTATACTTGCTTATCTCCCACTCT | 57.136 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
9090 | 16531 | 5.799827 | ATACTTGCTTATCTCCCACTCTC | 57.200 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
9091 | 16532 | 3.445008 | ACTTGCTTATCTCCCACTCTCA | 58.555 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
9092 | 16533 | 3.196685 | ACTTGCTTATCTCCCACTCTCAC | 59.803 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
9093 | 16534 | 2.820178 | TGCTTATCTCCCACTCTCACA | 58.180 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
9094 | 16535 | 3.378512 | TGCTTATCTCCCACTCTCACAT | 58.621 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
9095 | 16536 | 4.546674 | TGCTTATCTCCCACTCTCACATA | 58.453 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
9096 | 16537 | 4.586421 | TGCTTATCTCCCACTCTCACATAG | 59.414 | 45.833 | 0.00 | 0.00 | 0.00 | 2.23 |
9115 | 16556 | 9.355916 | TCACATAGTGTACTAGAAATCATAGCT | 57.644 | 33.333 | 0.00 | 0.00 | 34.79 | 3.32 |
9140 | 16581 | 0.736325 | GATTGGTCCGAGTGGTCACG | 60.736 | 60.000 | 0.00 | 0.00 | 36.30 | 4.35 |
9221 | 19621 | 4.272489 | CACATTATTTGGCCCTCTTCTGA | 58.728 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
9263 | 19663 | 8.605325 | AAATAGGGTAACTACACTAGTGATGT | 57.395 | 34.615 | 29.30 | 21.46 | 44.63 | 3.06 |
9266 | 19666 | 7.820578 | AGGGTAACTACACTAGTGATGTATC | 57.179 | 40.000 | 29.30 | 18.69 | 38.39 | 2.24 |
9267 | 19667 | 7.351952 | AGGGTAACTACACTAGTGATGTATCA | 58.648 | 38.462 | 29.30 | 12.02 | 38.39 | 2.15 |
9366 | 19766 | 4.421365 | GGCCATCTGTGAAGCCAA | 57.579 | 55.556 | 0.00 | 0.00 | 45.07 | 4.52 |
9404 | 19804 | 6.110033 | TGCCGAAGTATTTGCAACTCTATTA | 58.890 | 36.000 | 0.00 | 0.00 | 34.02 | 0.98 |
9444 | 19844 | 3.515071 | GCTGAAGCATTTGCAACTTTG | 57.485 | 42.857 | 0.00 | 0.00 | 45.16 | 2.77 |
9454 | 19854 | 5.922544 | GCATTTGCAACTTTGTTCTGACTAT | 59.077 | 36.000 | 0.00 | 0.00 | 41.59 | 2.12 |
9465 | 19865 | 8.831550 | ACTTTGTTCTGACTATGAAGAAGTTTC | 58.168 | 33.333 | 0.00 | 0.00 | 33.21 | 2.78 |
9526 | 19926 | 1.260544 | GCCTGGGAGAAAATGTTGCT | 58.739 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
9529 | 19929 | 2.611224 | CCTGGGAGAAAATGTTGCTTGC | 60.611 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
9547 | 19948 | 1.805254 | CCTGCGCCTGAGATTTTGG | 59.195 | 57.895 | 4.18 | 0.00 | 0.00 | 3.28 |
9567 | 19968 | 1.801309 | TTTTTGTAGCCTGGCCGCAC | 61.801 | 55.000 | 16.57 | 11.69 | 0.00 | 5.34 |
9581 | 19982 | 1.447317 | CCGCACTGCTGTTTGGAGTT | 61.447 | 55.000 | 5.35 | 0.00 | 45.26 | 3.01 |
9582 | 19983 | 0.040958 | CGCACTGCTGTTTGGAGTTC | 60.041 | 55.000 | 0.00 | 0.00 | 45.26 | 3.01 |
9583 | 19984 | 1.024271 | GCACTGCTGTTTGGAGTTCA | 58.976 | 50.000 | 0.00 | 0.00 | 45.26 | 3.18 |
9584 | 19985 | 1.268743 | GCACTGCTGTTTGGAGTTCAC | 60.269 | 52.381 | 0.00 | 0.00 | 45.26 | 3.18 |
9585 | 19986 | 2.292267 | CACTGCTGTTTGGAGTTCACT | 58.708 | 47.619 | 0.00 | 0.00 | 45.26 | 3.41 |
9586 | 19987 | 3.466836 | CACTGCTGTTTGGAGTTCACTA | 58.533 | 45.455 | 0.00 | 0.00 | 45.26 | 2.74 |
9587 | 19988 | 3.496130 | CACTGCTGTTTGGAGTTCACTAG | 59.504 | 47.826 | 0.00 | 0.00 | 45.26 | 2.57 |
9589 | 19990 | 2.224523 | TGCTGTTTGGAGTTCACTAGGG | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
9590 | 19991 | 2.038557 | GCTGTTTGGAGTTCACTAGGGA | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
9591 | 19992 | 3.307762 | GCTGTTTGGAGTTCACTAGGGAT | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
9632 | 20534 | 3.767673 | TGACAAACGGCTTAGATCCTACT | 59.232 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
9691 | 20593 | 2.115266 | CCCAGGCGACCAAAAGGT | 59.885 | 61.111 | 0.00 | 0.00 | 0.00 | 3.50 |
9696 | 20598 | 1.890510 | GGCGACCAAAAGGTGACGT | 60.891 | 57.895 | 0.00 | 0.00 | 32.33 | 4.34 |
9726 | 20628 | 4.893524 | GGCTAATTATTTGCCTGGGTAGTT | 59.106 | 41.667 | 20.05 | 0.00 | 43.05 | 2.24 |
9758 | 20660 | 3.168035 | TGCTCCAATTTTTCAGGGCTA | 57.832 | 42.857 | 0.00 | 0.00 | 0.00 | 3.93 |
9759 | 20661 | 3.711863 | TGCTCCAATTTTTCAGGGCTAT | 58.288 | 40.909 | 0.00 | 0.00 | 0.00 | 2.97 |
9760 | 20662 | 3.448301 | TGCTCCAATTTTTCAGGGCTATG | 59.552 | 43.478 | 0.00 | 0.00 | 0.00 | 2.23 |
9761 | 20663 | 3.448660 | GCTCCAATTTTTCAGGGCTATGT | 59.551 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
9762 | 20664 | 4.644685 | GCTCCAATTTTTCAGGGCTATGTA | 59.355 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
9763 | 20665 | 5.127031 | GCTCCAATTTTTCAGGGCTATGTAA | 59.873 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
9764 | 20666 | 6.524101 | TCCAATTTTTCAGGGCTATGTAAC | 57.476 | 37.500 | 0.00 | 0.00 | 0.00 | 2.50 |
9765 | 20667 | 5.420739 | TCCAATTTTTCAGGGCTATGTAACC | 59.579 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
9766 | 20668 | 5.186797 | CCAATTTTTCAGGGCTATGTAACCA | 59.813 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
9767 | 20669 | 6.295575 | CCAATTTTTCAGGGCTATGTAACCAA | 60.296 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
9768 | 20670 | 5.715434 | TTTTTCAGGGCTATGTAACCAAC | 57.285 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
9769 | 20671 | 2.684001 | TCAGGGCTATGTAACCAACG | 57.316 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
9770 | 20672 | 1.014352 | CAGGGCTATGTAACCAACGC | 58.986 | 55.000 | 0.00 | 0.00 | 0.00 | 4.84 |
9771 | 20673 | 0.107361 | AGGGCTATGTAACCAACGCC | 60.107 | 55.000 | 0.00 | 0.00 | 38.53 | 5.68 |
9772 | 20674 | 0.393267 | GGGCTATGTAACCAACGCCA | 60.393 | 55.000 | 0.00 | 0.00 | 40.07 | 5.69 |
9773 | 20675 | 1.014352 | GGCTATGTAACCAACGCCAG | 58.986 | 55.000 | 0.00 | 0.00 | 38.88 | 4.85 |
9774 | 20676 | 1.406341 | GGCTATGTAACCAACGCCAGA | 60.406 | 52.381 | 0.00 | 0.00 | 38.88 | 3.86 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
127 | 131 | 3.393970 | CCCTTCTGGCTCCGCTCA | 61.394 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
283 | 290 | 3.702048 | GTGGTGGGCTCGGTGCTA | 61.702 | 66.667 | 1.77 | 0.00 | 42.39 | 3.49 |
314 | 322 | 0.253044 | TCTTCGCTTGCCATAGCCTT | 59.747 | 50.000 | 0.00 | 0.00 | 37.90 | 4.35 |
320 | 328 | 0.254178 | AGATGGTCTTCGCTTGCCAT | 59.746 | 50.000 | 0.00 | 0.00 | 43.65 | 4.40 |
326 | 334 | 4.160439 | TCATGACTAAAGATGGTCTTCGCT | 59.840 | 41.667 | 0.00 | 0.00 | 35.27 | 4.93 |
347 | 355 | 4.448787 | GGGGGACAGGAGTACATACTATCA | 60.449 | 50.000 | 0.00 | 0.00 | 36.50 | 2.15 |
353 | 361 | 2.688817 | CGAAGGGGGACAGGAGTACATA | 60.689 | 54.545 | 0.00 | 0.00 | 0.00 | 2.29 |
490 | 500 | 3.584848 | AGAGTACAAGGATGAACTGCCTT | 59.415 | 43.478 | 0.00 | 0.00 | 45.07 | 4.35 |
542 | 557 | 6.707608 | TGTAAGACTCTACTCGTACTTTGTGA | 59.292 | 38.462 | 0.00 | 0.00 | 0.00 | 3.58 |
552 | 568 | 1.736126 | TGCGGTGTAAGACTCTACTCG | 59.264 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
594 | 610 | 0.042448 | GAAAGACACAACACGGCGAC | 60.042 | 55.000 | 16.62 | 0.00 | 0.00 | 5.19 |
684 | 703 | 1.227823 | CTCTGGGGTGTGTGCGAAA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.46 |
705 | 724 | 2.243810 | CGGGACCCAAGGAAAAATTCA | 58.756 | 47.619 | 12.15 | 0.00 | 0.00 | 2.57 |
709 | 728 | 0.111639 | CTCCGGGACCCAAGGAAAAA | 59.888 | 55.000 | 12.15 | 0.00 | 33.10 | 1.94 |
732 | 752 | 2.816204 | TGTCGTAACGGTTGGAATCA | 57.184 | 45.000 | 3.07 | 0.00 | 0.00 | 2.57 |
776 | 796 | 6.240894 | TCACAAATCAAGCAGTAATCCTTCT | 58.759 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
783 | 3487 | 6.142139 | CACGAAATCACAAATCAAGCAGTAA | 58.858 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
806 | 3510 | 3.420300 | TTTATTGGGTTCTGCGGTACA | 57.580 | 42.857 | 4.58 | 0.00 | 0.00 | 2.90 |
835 | 3539 | 2.224402 | GGCCATAAAAAGGTTTGGCACA | 60.224 | 45.455 | 14.12 | 0.00 | 37.48 | 4.57 |
842 | 3546 | 4.653801 | ACAAGTTCTGGCCATAAAAAGGTT | 59.346 | 37.500 | 5.51 | 0.00 | 0.00 | 3.50 |
859 | 6426 | 0.107116 | TGTTACCGGCCACACAAGTT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
907 | 6474 | 0.036952 | TGCTTCCCTCGCTTCTTCTG | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1164 | 6731 | 0.523072 | CTGGCAAATTCGTGTCCTGG | 59.477 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1295 | 6862 | 3.385433 | AGATGCCTCTGAGATCTCAACAG | 59.615 | 47.826 | 25.09 | 21.41 | 39.39 | 3.16 |
1329 | 6896 | 8.271398 | AGATTTATATTTAGGAACGGAGGGAA | 57.729 | 34.615 | 0.00 | 0.00 | 0.00 | 3.97 |
1511 | 7079 | 3.512033 | ATACTCCTGACTTGCGAGTTC | 57.488 | 47.619 | 8.34 | 2.47 | 37.93 | 3.01 |
1730 | 7298 | 2.288213 | CGTACTGCACTTTGGTCAGAGA | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1877 | 7446 | 5.295152 | ACGGTAGTGACAAGAAGGTAAAAG | 58.705 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
2009 | 7578 | 1.822371 | CCCCCGTTCCAAAATGTAAGG | 59.178 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
2216 | 7785 | 6.645790 | AGGCACATTATGAGATGGATTTTC | 57.354 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2348 | 7920 | 4.339247 | CCTGTGTGACACCTTCAAAAGAAT | 59.661 | 41.667 | 13.85 | 0.00 | 35.39 | 2.40 |
3413 | 8987 | 7.842484 | TGTTGTTGTTGTTGTTGTTTACTTTC | 58.158 | 30.769 | 0.00 | 0.00 | 0.00 | 2.62 |
3471 | 9087 | 8.305046 | AGATCTTATCTGTTTCAGTTCTAGCT | 57.695 | 34.615 | 0.00 | 0.00 | 38.44 | 3.32 |
3478 | 9094 | 5.330455 | TGCGAGATCTTATCTGTTTCAGT | 57.670 | 39.130 | 0.00 | 0.00 | 40.38 | 3.41 |
3487 | 9103 | 4.688021 | AGAGTTGGTTGCGAGATCTTATC | 58.312 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
3669 | 9287 | 1.346062 | AGCTCCAGTGCATATCGGAT | 58.654 | 50.000 | 0.00 | 0.00 | 34.99 | 4.18 |
3674 | 9292 | 2.104451 | CTCCAGAAGCTCCAGTGCATAT | 59.896 | 50.000 | 0.00 | 0.00 | 34.99 | 1.78 |
4018 | 9640 | 4.488879 | GGTTCTGAAATCCAAGTGATTGC | 58.511 | 43.478 | 0.00 | 0.00 | 42.97 | 3.56 |
4184 | 9810 | 0.179018 | AGTGTTGTCTGAGCAACCCC | 60.179 | 55.000 | 14.13 | 7.45 | 45.80 | 4.95 |
4431 | 10057 | 4.214971 | GTGCGAGATGATATTCTTTGGCAT | 59.785 | 41.667 | 0.00 | 0.00 | 32.88 | 4.40 |
4902 | 10799 | 0.825840 | GCAAGTGCCCAAGTACCCAA | 60.826 | 55.000 | 0.00 | 0.00 | 34.31 | 4.12 |
4939 | 10836 | 0.762418 | ACCGACCACTGTTCATGGAA | 59.238 | 50.000 | 0.00 | 0.00 | 39.87 | 3.53 |
5247 | 11164 | 4.387256 | CGAGACAATCAAACACCTCTTCTC | 59.613 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
5362 | 11281 | 7.266922 | ACCGCTAAAAGTTAAGATTTTCACA | 57.733 | 32.000 | 2.43 | 0.00 | 32.38 | 3.58 |
5722 | 11647 | 7.332926 | TGAAAGACAGCTCAGAGATTTGATTAC | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
5723 | 11648 | 7.389232 | TGAAAGACAGCTCAGAGATTTGATTA | 58.611 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
5747 | 11673 | 0.373716 | GCTTTGGTACCTTCGCGATG | 59.626 | 55.000 | 10.88 | 13.11 | 0.00 | 3.84 |
5825 | 11754 | 1.297689 | GTGTCTCAGGCATGCTGGA | 59.702 | 57.895 | 18.92 | 14.05 | 0.00 | 3.86 |
6186 | 13585 | 3.663754 | GCGCATAGAGAAATGATCAAGCG | 60.664 | 47.826 | 0.30 | 6.07 | 43.72 | 4.68 |
6213 | 13612 | 3.064207 | GACGCCTCACTAAAACATGTCA | 58.936 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
6564 | 13981 | 5.565592 | TGTGTCCAATGCTATTCAACATC | 57.434 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
7040 | 14460 | 6.633634 | GTGAGAGCGTAGTATCAATCACTAAC | 59.366 | 42.308 | 0.00 | 0.00 | 34.44 | 2.34 |
7364 | 14784 | 6.823286 | TGACATATAACCATGGAAGAAGGA | 57.177 | 37.500 | 21.47 | 0.00 | 0.00 | 3.36 |
7521 | 14941 | 0.880718 | GCCCTAGGAATTTCCGCTCG | 60.881 | 60.000 | 11.48 | 1.25 | 42.75 | 5.03 |
7743 | 15163 | 9.396022 | CACCCAACTTAATATCATGTTCTAAGT | 57.604 | 33.333 | 0.00 | 0.00 | 34.97 | 2.24 |
7899 | 15319 | 0.478507 | AGCCCTTGCAACAACCTAGT | 59.521 | 50.000 | 0.00 | 0.00 | 41.13 | 2.57 |
7986 | 15406 | 0.539986 | TTGCGGGGAACATAGAGACC | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
8284 | 15707 | 4.201812 | CGATTTACTCGGACATGCACATTT | 60.202 | 41.667 | 0.00 | 0.00 | 43.82 | 2.32 |
8285 | 15708 | 3.309682 | CGATTTACTCGGACATGCACATT | 59.690 | 43.478 | 0.00 | 0.00 | 43.82 | 2.71 |
8286 | 15709 | 2.866156 | CGATTTACTCGGACATGCACAT | 59.134 | 45.455 | 0.00 | 0.00 | 43.82 | 3.21 |
8287 | 15710 | 2.267426 | CGATTTACTCGGACATGCACA | 58.733 | 47.619 | 0.00 | 0.00 | 43.82 | 4.57 |
8288 | 15711 | 2.998668 | CGATTTACTCGGACATGCAC | 57.001 | 50.000 | 0.00 | 0.00 | 43.82 | 4.57 |
8304 | 15727 | 9.499479 | AGCTCATTTTGATAATCAGATAACGAT | 57.501 | 29.630 | 0.00 | 0.00 | 0.00 | 3.73 |
8305 | 15728 | 8.768019 | CAGCTCATTTTGATAATCAGATAACGA | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
8306 | 15729 | 8.013947 | CCAGCTCATTTTGATAATCAGATAACG | 58.986 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
8307 | 15730 | 8.844244 | ACCAGCTCATTTTGATAATCAGATAAC | 58.156 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
8308 | 15731 | 8.843262 | CACCAGCTCATTTTGATAATCAGATAA | 58.157 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
8309 | 15732 | 7.446319 | CCACCAGCTCATTTTGATAATCAGATA | 59.554 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
8310 | 15733 | 6.264744 | CCACCAGCTCATTTTGATAATCAGAT | 59.735 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
8311 | 15734 | 5.591472 | CCACCAGCTCATTTTGATAATCAGA | 59.409 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
8312 | 15735 | 5.359009 | ACCACCAGCTCATTTTGATAATCAG | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
8313 | 15736 | 5.263599 | ACCACCAGCTCATTTTGATAATCA | 58.736 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
8314 | 15737 | 5.841957 | ACCACCAGCTCATTTTGATAATC | 57.158 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
8315 | 15738 | 6.400568 | CAAACCACCAGCTCATTTTGATAAT | 58.599 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
8316 | 15739 | 5.782047 | CAAACCACCAGCTCATTTTGATAA | 58.218 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
8317 | 15740 | 4.321899 | GCAAACCACCAGCTCATTTTGATA | 60.322 | 41.667 | 6.88 | 0.00 | 0.00 | 2.15 |
8318 | 15741 | 3.555586 | GCAAACCACCAGCTCATTTTGAT | 60.556 | 43.478 | 6.88 | 0.00 | 0.00 | 2.57 |
8319 | 15742 | 2.224018 | GCAAACCACCAGCTCATTTTGA | 60.224 | 45.455 | 6.88 | 0.00 | 0.00 | 2.69 |
8320 | 15743 | 2.137523 | GCAAACCACCAGCTCATTTTG | 58.862 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
8321 | 15744 | 1.070601 | GGCAAACCACCAGCTCATTTT | 59.929 | 47.619 | 0.00 | 0.00 | 35.26 | 1.82 |
8415 | 15838 | 4.201657 | CCAACTCATGATTCTGGCACATA | 58.798 | 43.478 | 0.00 | 0.00 | 38.20 | 2.29 |
8427 | 15850 | 3.092301 | AGATCTCACGACCAACTCATGA | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
8473 | 15896 | 9.936759 | CAAAGCCTTTAATCCCAAAAATAGTTA | 57.063 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
8478 | 15901 | 7.059788 | ACAACAAAGCCTTTAATCCCAAAAAT | 58.940 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
8479 | 15902 | 6.418946 | ACAACAAAGCCTTTAATCCCAAAAA | 58.581 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
8480 | 15903 | 5.995446 | ACAACAAAGCCTTTAATCCCAAAA | 58.005 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
8819 | 16260 | 7.316544 | CCATCAGTTGGTTGTACTATTAACC | 57.683 | 40.000 | 6.00 | 6.00 | 45.15 | 2.85 |
8834 | 16275 | 4.319046 | GCAACGTCATATAGCCATCAGTTG | 60.319 | 45.833 | 0.00 | 0.00 | 39.29 | 3.16 |
8835 | 16276 | 3.809832 | GCAACGTCATATAGCCATCAGTT | 59.190 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
8836 | 16277 | 3.393800 | GCAACGTCATATAGCCATCAGT | 58.606 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
8837 | 16278 | 2.738846 | GGCAACGTCATATAGCCATCAG | 59.261 | 50.000 | 0.00 | 0.00 | 44.59 | 2.90 |
8838 | 16279 | 2.766313 | GGCAACGTCATATAGCCATCA | 58.234 | 47.619 | 0.00 | 0.00 | 44.59 | 3.07 |
8842 | 16283 | 4.503910 | TGATATGGCAACGTCATATAGCC | 58.496 | 43.478 | 7.90 | 6.67 | 40.36 | 3.93 |
8843 | 16284 | 6.045318 | AGATGATATGGCAACGTCATATAGC | 58.955 | 40.000 | 7.90 | 0.85 | 40.36 | 2.97 |
8846 | 16287 | 7.869937 | GCTATAGATGATATGGCAACGTCATAT | 59.130 | 37.037 | 3.21 | 7.70 | 42.55 | 1.78 |
8847 | 16288 | 7.203218 | GCTATAGATGATATGGCAACGTCATA | 58.797 | 38.462 | 3.21 | 0.00 | 36.37 | 2.15 |
8848 | 16289 | 6.045318 | GCTATAGATGATATGGCAACGTCAT | 58.955 | 40.000 | 3.21 | 10.99 | 38.14 | 3.06 |
8849 | 16290 | 5.410924 | GCTATAGATGATATGGCAACGTCA | 58.589 | 41.667 | 3.21 | 0.00 | 42.51 | 4.35 |
8850 | 16291 | 4.806247 | GGCTATAGATGATATGGCAACGTC | 59.194 | 45.833 | 3.21 | 0.00 | 42.51 | 4.34 |
8851 | 16292 | 4.222810 | TGGCTATAGATGATATGGCAACGT | 59.777 | 41.667 | 3.21 | 0.00 | 42.51 | 3.99 |
8852 | 16293 | 4.758688 | TGGCTATAGATGATATGGCAACG | 58.241 | 43.478 | 3.21 | 0.00 | 42.51 | 4.10 |
8853 | 16294 | 6.176183 | AGTTGGCTATAGATGATATGGCAAC | 58.824 | 40.000 | 18.06 | 18.06 | 44.28 | 4.17 |
8854 | 16295 | 6.378661 | AGTTGGCTATAGATGATATGGCAA | 57.621 | 37.500 | 3.21 | 0.00 | 34.43 | 4.52 |
8855 | 16296 | 6.378661 | AAGTTGGCTATAGATGATATGGCA | 57.621 | 37.500 | 3.21 | 0.00 | 33.77 | 4.92 |
8856 | 16297 | 6.656693 | ACAAAGTTGGCTATAGATGATATGGC | 59.343 | 38.462 | 3.21 | 0.00 | 0.00 | 4.40 |
8857 | 16298 | 9.376075 | CTACAAAGTTGGCTATAGATGATATGG | 57.624 | 37.037 | 3.21 | 0.00 | 0.00 | 2.74 |
8858 | 16299 | 8.877779 | GCTACAAAGTTGGCTATAGATGATATG | 58.122 | 37.037 | 3.21 | 0.00 | 0.00 | 1.78 |
8859 | 16300 | 8.043710 | GGCTACAAAGTTGGCTATAGATGATAT | 58.956 | 37.037 | 3.21 | 0.00 | 32.14 | 1.63 |
8860 | 16301 | 7.235606 | AGGCTACAAAGTTGGCTATAGATGATA | 59.764 | 37.037 | 3.21 | 0.00 | 41.40 | 2.15 |
8861 | 16302 | 6.043706 | AGGCTACAAAGTTGGCTATAGATGAT | 59.956 | 38.462 | 3.21 | 0.00 | 41.40 | 2.45 |
8862 | 16303 | 5.366768 | AGGCTACAAAGTTGGCTATAGATGA | 59.633 | 40.000 | 3.21 | 0.00 | 41.40 | 2.92 |
8863 | 16304 | 5.615289 | AGGCTACAAAGTTGGCTATAGATG | 58.385 | 41.667 | 3.21 | 0.00 | 41.40 | 2.90 |
8864 | 16305 | 5.896073 | AGGCTACAAAGTTGGCTATAGAT | 57.104 | 39.130 | 3.21 | 0.00 | 41.40 | 1.98 |
8865 | 16306 | 5.188948 | TGAAGGCTACAAAGTTGGCTATAGA | 59.811 | 40.000 | 3.21 | 0.00 | 42.18 | 1.98 |
8866 | 16307 | 5.428253 | TGAAGGCTACAAAGTTGGCTATAG | 58.572 | 41.667 | 7.92 | 0.00 | 42.18 | 1.31 |
8867 | 16308 | 5.429681 | TGAAGGCTACAAAGTTGGCTATA | 57.570 | 39.130 | 7.92 | 0.00 | 42.18 | 1.31 |
8868 | 16309 | 4.301072 | TGAAGGCTACAAAGTTGGCTAT | 57.699 | 40.909 | 7.92 | 0.44 | 42.18 | 2.97 |
8869 | 16310 | 3.780804 | TGAAGGCTACAAAGTTGGCTA | 57.219 | 42.857 | 7.92 | 0.00 | 42.18 | 3.93 |
8870 | 16311 | 2.656947 | TGAAGGCTACAAAGTTGGCT | 57.343 | 45.000 | 2.19 | 2.19 | 44.35 | 4.75 |
8871 | 16312 | 2.623416 | ACTTGAAGGCTACAAAGTTGGC | 59.377 | 45.455 | 0.00 | 0.00 | 34.59 | 4.52 |
8872 | 16313 | 6.879458 | AGTATACTTGAAGGCTACAAAGTTGG | 59.121 | 38.462 | 12.75 | 0.00 | 0.00 | 3.77 |
8873 | 16314 | 7.907214 | AGTATACTTGAAGGCTACAAAGTTG | 57.093 | 36.000 | 12.75 | 0.00 | 0.00 | 3.16 |
8874 | 16315 | 8.813951 | ACTAGTATACTTGAAGGCTACAAAGTT | 58.186 | 33.333 | 19.28 | 6.05 | 0.00 | 2.66 |
8875 | 16316 | 8.363761 | ACTAGTATACTTGAAGGCTACAAAGT | 57.636 | 34.615 | 19.28 | 12.31 | 0.00 | 2.66 |
8878 | 16319 | 9.690913 | TCTTACTAGTATACTTGAAGGCTACAA | 57.309 | 33.333 | 19.28 | 0.00 | 0.00 | 2.41 |
8879 | 16320 | 9.863650 | ATCTTACTAGTATACTTGAAGGCTACA | 57.136 | 33.333 | 19.28 | 5.02 | 0.00 | 2.74 |
8882 | 16323 | 9.863650 | TGTATCTTACTAGTATACTTGAAGGCT | 57.136 | 33.333 | 19.28 | 11.53 | 0.00 | 4.58 |
8895 | 16336 | 9.191479 | AGTAGCACATCTTTGTATCTTACTAGT | 57.809 | 33.333 | 0.00 | 0.00 | 33.76 | 2.57 |
8898 | 16339 | 8.531982 | TGAAGTAGCACATCTTTGTATCTTACT | 58.468 | 33.333 | 0.00 | 0.00 | 33.76 | 2.24 |
8899 | 16340 | 8.703604 | TGAAGTAGCACATCTTTGTATCTTAC | 57.296 | 34.615 | 0.00 | 0.00 | 33.76 | 2.34 |
8900 | 16341 | 9.890629 | AATGAAGTAGCACATCTTTGTATCTTA | 57.109 | 29.630 | 0.00 | 0.00 | 33.76 | 2.10 |
8901 | 16342 | 8.798859 | AATGAAGTAGCACATCTTTGTATCTT | 57.201 | 30.769 | 0.00 | 0.00 | 33.76 | 2.40 |
8902 | 16343 | 9.890629 | TTAATGAAGTAGCACATCTTTGTATCT | 57.109 | 29.630 | 0.00 | 0.00 | 33.76 | 1.98 |
8906 | 16347 | 9.448438 | TGTATTAATGAAGTAGCACATCTTTGT | 57.552 | 29.630 | 0.00 | 0.00 | 36.15 | 2.83 |
8909 | 16350 | 9.060347 | CCATGTATTAATGAAGTAGCACATCTT | 57.940 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
8910 | 16351 | 7.173907 | GCCATGTATTAATGAAGTAGCACATCT | 59.826 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
8911 | 16352 | 7.301054 | GCCATGTATTAATGAAGTAGCACATC | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
8912 | 16353 | 6.207417 | GGCCATGTATTAATGAAGTAGCACAT | 59.793 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
8913 | 16354 | 5.530915 | GGCCATGTATTAATGAAGTAGCACA | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
8914 | 16355 | 5.048713 | GGGCCATGTATTAATGAAGTAGCAC | 60.049 | 44.000 | 4.39 | 0.00 | 0.00 | 4.40 |
8915 | 16356 | 5.070001 | GGGCCATGTATTAATGAAGTAGCA | 58.930 | 41.667 | 4.39 | 0.00 | 0.00 | 3.49 |
8916 | 16357 | 5.048713 | GTGGGCCATGTATTAATGAAGTAGC | 60.049 | 44.000 | 10.70 | 0.00 | 0.00 | 3.58 |
8917 | 16358 | 5.473504 | GGTGGGCCATGTATTAATGAAGTAG | 59.526 | 44.000 | 10.70 | 0.00 | 34.09 | 2.57 |
8918 | 16359 | 5.133660 | AGGTGGGCCATGTATTAATGAAGTA | 59.866 | 40.000 | 10.70 | 0.00 | 37.19 | 2.24 |
8919 | 16360 | 4.079212 | AGGTGGGCCATGTATTAATGAAGT | 60.079 | 41.667 | 10.70 | 0.00 | 37.19 | 3.01 |
8920 | 16361 | 4.473444 | AGGTGGGCCATGTATTAATGAAG | 58.527 | 43.478 | 10.70 | 0.00 | 37.19 | 3.02 |
8921 | 16362 | 4.469657 | GAGGTGGGCCATGTATTAATGAA | 58.530 | 43.478 | 10.70 | 0.00 | 37.19 | 2.57 |
8922 | 16363 | 3.181434 | GGAGGTGGGCCATGTATTAATGA | 60.181 | 47.826 | 10.70 | 0.00 | 37.19 | 2.57 |
8923 | 16364 | 3.157087 | GGAGGTGGGCCATGTATTAATG | 58.843 | 50.000 | 10.70 | 0.00 | 37.19 | 1.90 |
8924 | 16365 | 2.110011 | GGGAGGTGGGCCATGTATTAAT | 59.890 | 50.000 | 10.70 | 0.00 | 37.19 | 1.40 |
8925 | 16366 | 1.497286 | GGGAGGTGGGCCATGTATTAA | 59.503 | 52.381 | 10.70 | 0.00 | 37.19 | 1.40 |
8926 | 16367 | 1.145571 | GGGAGGTGGGCCATGTATTA | 58.854 | 55.000 | 10.70 | 0.00 | 37.19 | 0.98 |
8927 | 16368 | 0.923729 | TGGGAGGTGGGCCATGTATT | 60.924 | 55.000 | 10.70 | 0.00 | 37.19 | 1.89 |
8928 | 16369 | 1.308657 | TGGGAGGTGGGCCATGTAT | 60.309 | 57.895 | 10.70 | 0.00 | 37.19 | 2.29 |
8929 | 16370 | 2.126142 | TGGGAGGTGGGCCATGTA | 59.874 | 61.111 | 10.70 | 0.00 | 37.19 | 2.29 |
8930 | 16371 | 3.661648 | GTGGGAGGTGGGCCATGT | 61.662 | 66.667 | 10.70 | 0.00 | 37.19 | 3.21 |
8931 | 16372 | 3.341629 | AGTGGGAGGTGGGCCATG | 61.342 | 66.667 | 10.70 | 0.00 | 37.19 | 3.66 |
8932 | 16373 | 3.017581 | GAGTGGGAGGTGGGCCAT | 61.018 | 66.667 | 10.70 | 0.00 | 37.19 | 4.40 |
8933 | 16374 | 4.590553 | TGAGTGGGAGGTGGGCCA | 62.591 | 66.667 | 0.00 | 0.00 | 37.19 | 5.36 |
8934 | 16375 | 4.035102 | GTGAGTGGGAGGTGGGCC | 62.035 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
8935 | 16376 | 1.271840 | TATGTGAGTGGGAGGTGGGC | 61.272 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
8936 | 16377 | 0.833287 | CTATGTGAGTGGGAGGTGGG | 59.167 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
8937 | 16378 | 1.573108 | ACTATGTGAGTGGGAGGTGG | 58.427 | 55.000 | 0.00 | 0.00 | 36.87 | 4.61 |
8946 | 16387 | 3.632333 | TGCTACTAGGCACTATGTGAGT | 58.368 | 45.455 | 1.52 | 0.00 | 41.70 | 3.41 |
8969 | 16410 | 4.719106 | AGGAGCCAGCTGCAGCAC | 62.719 | 66.667 | 38.24 | 26.54 | 44.83 | 4.40 |
8970 | 16411 | 2.989173 | AAAAGGAGCCAGCTGCAGCA | 62.989 | 55.000 | 38.24 | 0.00 | 44.83 | 4.41 |
8971 | 16412 | 2.210341 | GAAAAGGAGCCAGCTGCAGC | 62.210 | 60.000 | 31.53 | 31.53 | 44.83 | 5.25 |
8972 | 16413 | 0.608582 | AGAAAAGGAGCCAGCTGCAG | 60.609 | 55.000 | 10.11 | 10.11 | 44.83 | 4.41 |
8973 | 16414 | 0.607489 | GAGAAAAGGAGCCAGCTGCA | 60.607 | 55.000 | 13.86 | 0.00 | 44.83 | 4.41 |
8974 | 16415 | 0.322366 | AGAGAAAAGGAGCCAGCTGC | 60.322 | 55.000 | 8.66 | 2.51 | 41.71 | 5.25 |
8975 | 16416 | 1.278699 | AGAGAGAAAAGGAGCCAGCTG | 59.721 | 52.381 | 6.78 | 6.78 | 0.00 | 4.24 |
8976 | 16417 | 1.554617 | GAGAGAGAAAAGGAGCCAGCT | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
8977 | 16418 | 1.406751 | GGAGAGAGAAAAGGAGCCAGC | 60.407 | 57.143 | 0.00 | 0.00 | 0.00 | 4.85 |
8978 | 16419 | 2.168313 | GAGGAGAGAGAAAAGGAGCCAG | 59.832 | 54.545 | 0.00 | 0.00 | 0.00 | 4.85 |
8979 | 16420 | 2.183679 | GAGGAGAGAGAAAAGGAGCCA | 58.816 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
8980 | 16421 | 2.466846 | AGAGGAGAGAGAAAAGGAGCC | 58.533 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
8981 | 16422 | 3.769300 | AGAAGAGGAGAGAGAAAAGGAGC | 59.231 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
8982 | 16423 | 5.264395 | AGAGAAGAGGAGAGAGAAAAGGAG | 58.736 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
8983 | 16424 | 5.269554 | AGAGAAGAGGAGAGAGAAAAGGA | 57.730 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
8984 | 16425 | 5.105351 | GGAAGAGAAGAGGAGAGAGAAAAGG | 60.105 | 48.000 | 0.00 | 0.00 | 0.00 | 3.11 |
8985 | 16426 | 5.105351 | GGGAAGAGAAGAGGAGAGAGAAAAG | 60.105 | 48.000 | 0.00 | 0.00 | 0.00 | 2.27 |
8986 | 16427 | 4.775253 | GGGAAGAGAAGAGGAGAGAGAAAA | 59.225 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
8987 | 16428 | 4.045334 | AGGGAAGAGAAGAGGAGAGAGAAA | 59.955 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
8988 | 16429 | 3.596046 | AGGGAAGAGAAGAGGAGAGAGAA | 59.404 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
8989 | 16430 | 3.197983 | AGGGAAGAGAAGAGGAGAGAGA | 58.802 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
8990 | 16431 | 3.555966 | GAGGGAAGAGAAGAGGAGAGAG | 58.444 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
8991 | 16432 | 2.243736 | GGAGGGAAGAGAAGAGGAGAGA | 59.756 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
8992 | 16433 | 2.024464 | TGGAGGGAAGAGAAGAGGAGAG | 60.024 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
8993 | 16434 | 2.003830 | TGGAGGGAAGAGAAGAGGAGA | 58.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
8994 | 16435 | 2.107366 | GTGGAGGGAAGAGAAGAGGAG | 58.893 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
8995 | 16436 | 1.617263 | CGTGGAGGGAAGAGAAGAGGA | 60.617 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
8996 | 16437 | 0.820871 | CGTGGAGGGAAGAGAAGAGG | 59.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
8997 | 16438 | 0.820871 | CCGTGGAGGGAAGAGAAGAG | 59.179 | 60.000 | 0.00 | 0.00 | 35.97 | 2.85 |
8998 | 16439 | 1.258445 | GCCGTGGAGGGAAGAGAAGA | 61.258 | 60.000 | 0.00 | 0.00 | 41.48 | 2.87 |
8999 | 16440 | 1.219393 | GCCGTGGAGGGAAGAGAAG | 59.781 | 63.158 | 0.00 | 0.00 | 41.48 | 2.85 |
9000 | 16441 | 1.535444 | TGCCGTGGAGGGAAGAGAA | 60.535 | 57.895 | 0.00 | 0.00 | 37.42 | 2.87 |
9001 | 16442 | 1.984570 | CTGCCGTGGAGGGAAGAGA | 60.985 | 63.158 | 0.00 | 0.00 | 40.94 | 3.10 |
9002 | 16443 | 2.581354 | CTGCCGTGGAGGGAAGAG | 59.419 | 66.667 | 0.00 | 0.00 | 40.94 | 2.85 |
9003 | 16444 | 3.706373 | GCTGCCGTGGAGGGAAGA | 61.706 | 66.667 | 0.00 | 0.00 | 40.94 | 2.87 |
9004 | 16445 | 3.965539 | CTGCTGCCGTGGAGGGAAG | 62.966 | 68.421 | 0.00 | 0.00 | 40.94 | 3.46 |
9005 | 16446 | 4.020617 | CTGCTGCCGTGGAGGGAA | 62.021 | 66.667 | 0.00 | 0.00 | 40.94 | 3.97 |
9007 | 16448 | 3.551496 | TTTCTGCTGCCGTGGAGGG | 62.551 | 63.158 | 0.00 | 0.00 | 41.48 | 4.30 |
9008 | 16449 | 1.172180 | TTTTTCTGCTGCCGTGGAGG | 61.172 | 55.000 | 0.00 | 0.00 | 44.97 | 4.30 |
9009 | 16450 | 0.883833 | ATTTTTCTGCTGCCGTGGAG | 59.116 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
9010 | 16451 | 1.327303 | AATTTTTCTGCTGCCGTGGA | 58.673 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
9011 | 16452 | 3.508744 | ATAATTTTTCTGCTGCCGTGG | 57.491 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
9012 | 16453 | 7.524294 | AAAATATAATTTTTCTGCTGCCGTG | 57.476 | 32.000 | 0.00 | 0.00 | 0.00 | 4.94 |
9013 | 16454 | 9.816354 | ATTAAAATATAATTTTTCTGCTGCCGT | 57.184 | 25.926 | 0.00 | 0.00 | 31.54 | 5.68 |
9059 | 16500 | 8.660435 | TGGGAGATAAGCAAGTATAATAAGCTT | 58.340 | 33.333 | 14.52 | 14.52 | 46.23 | 3.74 |
9060 | 16501 | 8.097662 | GTGGGAGATAAGCAAGTATAATAAGCT | 58.902 | 37.037 | 0.00 | 0.00 | 37.08 | 3.74 |
9061 | 16502 | 8.097662 | AGTGGGAGATAAGCAAGTATAATAAGC | 58.902 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
9062 | 16503 | 9.646427 | GAGTGGGAGATAAGCAAGTATAATAAG | 57.354 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
9063 | 16504 | 9.381038 | AGAGTGGGAGATAAGCAAGTATAATAA | 57.619 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
9064 | 16505 | 8.958060 | AGAGTGGGAGATAAGCAAGTATAATA | 57.042 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
9065 | 16506 | 7.510685 | TGAGAGTGGGAGATAAGCAAGTATAAT | 59.489 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
9066 | 16507 | 6.839134 | TGAGAGTGGGAGATAAGCAAGTATAA | 59.161 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
9067 | 16508 | 6.265649 | GTGAGAGTGGGAGATAAGCAAGTATA | 59.734 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
9068 | 16509 | 5.069781 | GTGAGAGTGGGAGATAAGCAAGTAT | 59.930 | 44.000 | 0.00 | 0.00 | 0.00 | 2.12 |
9069 | 16510 | 4.402793 | GTGAGAGTGGGAGATAAGCAAGTA | 59.597 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
9070 | 16511 | 3.196685 | GTGAGAGTGGGAGATAAGCAAGT | 59.803 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
9071 | 16512 | 3.196469 | TGTGAGAGTGGGAGATAAGCAAG | 59.804 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
9072 | 16513 | 3.173151 | TGTGAGAGTGGGAGATAAGCAA | 58.827 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
9073 | 16514 | 2.820178 | TGTGAGAGTGGGAGATAAGCA | 58.180 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
9074 | 16515 | 4.586841 | ACTATGTGAGAGTGGGAGATAAGC | 59.413 | 45.833 | 0.00 | 0.00 | 0.00 | 3.09 |
9075 | 16516 | 6.083098 | CACTATGTGAGAGTGGGAGATAAG | 57.917 | 45.833 | 0.00 | 0.00 | 40.58 | 1.73 |
9085 | 16526 | 8.809468 | TGATTTCTAGTACACTATGTGAGAGT | 57.191 | 34.615 | 4.61 | 0.00 | 36.96 | 3.24 |
9088 | 16529 | 9.619316 | GCTATGATTTCTAGTACACTATGTGAG | 57.381 | 37.037 | 4.61 | 0.00 | 36.96 | 3.51 |
9089 | 16530 | 9.355916 | AGCTATGATTTCTAGTACACTATGTGA | 57.644 | 33.333 | 4.61 | 0.00 | 36.96 | 3.58 |
9090 | 16531 | 9.404348 | CAGCTATGATTTCTAGTACACTATGTG | 57.596 | 37.037 | 0.00 | 0.00 | 39.75 | 3.21 |
9091 | 16532 | 9.137459 | ACAGCTATGATTTCTAGTACACTATGT | 57.863 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
9092 | 16533 | 9.404348 | CACAGCTATGATTTCTAGTACACTATG | 57.596 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
9093 | 16534 | 9.137459 | ACACAGCTATGATTTCTAGTACACTAT | 57.863 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
9094 | 16535 | 8.521170 | ACACAGCTATGATTTCTAGTACACTA | 57.479 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
9095 | 16536 | 7.411486 | ACACAGCTATGATTTCTAGTACACT | 57.589 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
9096 | 16537 | 7.759886 | TCAACACAGCTATGATTTCTAGTACAC | 59.240 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
9115 | 16556 | 1.542328 | CCACTCGGACCAATCAACACA | 60.542 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
9177 | 16618 | 0.596083 | CGTAGATGAGAAGCAGCCGG | 60.596 | 60.000 | 0.00 | 0.00 | 31.91 | 6.13 |
9276 | 19676 | 5.416639 | GGAATAAAACACTCATTTACCCCGT | 59.583 | 40.000 | 0.00 | 0.00 | 0.00 | 5.28 |
9278 | 19678 | 6.844097 | TGGAATAAAACACTCATTTACCCC | 57.156 | 37.500 | 0.00 | 0.00 | 0.00 | 4.95 |
9281 | 19681 | 9.191995 | CACCTTTGGAATAAAACACTCATTTAC | 57.808 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
9366 | 19766 | 7.719871 | ATACTTCGGCAAGGTATAGTCATAT | 57.280 | 36.000 | 0.00 | 0.00 | 33.37 | 1.78 |
9404 | 19804 | 7.043961 | TCAGCAAGATATTCTTCGTAGTCAT | 57.956 | 36.000 | 0.00 | 0.00 | 33.78 | 3.06 |
9444 | 19844 | 7.095439 | CCACAGAAACTTCTTCATAGTCAGAAC | 60.095 | 40.741 | 0.00 | 0.00 | 34.74 | 3.01 |
9454 | 19854 | 6.837312 | TCCTTATTCCACAGAAACTTCTTCA | 58.163 | 36.000 | 0.00 | 0.00 | 34.74 | 3.02 |
9465 | 19865 | 5.256474 | ACCAAACTGATCCTTATTCCACAG | 58.744 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
9529 | 19929 | 0.962356 | ACCAAAATCTCAGGCGCAGG | 60.962 | 55.000 | 10.83 | 0.00 | 0.00 | 4.85 |
9547 | 19948 | 1.080772 | GCGGCCAGGCTACAAAAAC | 60.081 | 57.895 | 12.43 | 0.00 | 0.00 | 2.43 |
9567 | 19968 | 3.070018 | CCTAGTGAACTCCAAACAGCAG | 58.930 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
9609 | 20031 | 2.973945 | AGGATCTAAGCCGTTTGTCAC | 58.026 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
9691 | 20593 | 0.613260 | AATTAGCCTGCCAGACGTCA | 59.387 | 50.000 | 19.50 | 0.00 | 0.00 | 4.35 |
9726 | 20628 | 4.039092 | GGAGCAAGCCTGGCCTGA | 62.039 | 66.667 | 21.15 | 0.00 | 0.00 | 3.86 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.