Multiple sequence alignment - TraesCS3D01G196000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G196000 chr3D 100.000 5115 0 0 1 5115 192055044 192060158 0.000000e+00 9446.0
1 TraesCS3D01G196000 chr3D 87.904 711 47 18 4081 4774 144297792 144298480 0.000000e+00 800.0
2 TraesCS3D01G196000 chr3D 88.732 284 29 2 4832 5115 121211878 121211598 1.360000e-90 344.0
3 TraesCS3D01G196000 chr3D 84.324 185 12 7 3797 3974 144291445 144291619 1.140000e-36 165.0
4 TraesCS3D01G196000 chr3A 96.665 4438 108 16 387 4790 262526258 262521827 0.000000e+00 7339.0
5 TraesCS3D01G196000 chr3A 84.793 651 40 23 4142 4774 163929286 163929895 2.640000e-167 599.0
6 TraesCS3D01G196000 chr3A 88.770 187 13 4 3795 3974 163923941 163924126 6.670000e-54 222.0
7 TraesCS3D01G196000 chr3A 95.876 97 3 1 191 287 267073228 267073323 6.860000e-34 156.0
8 TraesCS3D01G196000 chr3B 93.983 4421 109 41 414 4790 275916220 275911913 0.000000e+00 6545.0
9 TraesCS3D01G196000 chr3B 84.774 775 66 25 4029 4774 207451760 207452511 0.000000e+00 730.0
10 TraesCS3D01G196000 chr3B 86.111 360 18 10 1 358 275917087 275916758 4.870000e-95 359.0
11 TraesCS3D01G196000 chr3B 87.293 181 22 1 1 181 315388608 315388429 6.710000e-49 206.0
12 TraesCS3D01G196000 chr3B 85.714 182 22 4 1 181 315403983 315404161 6.760000e-44 189.0
13 TraesCS3D01G196000 chr3B 94.175 103 4 2 189 290 276470218 276470117 6.860000e-34 156.0
14 TraesCS3D01G196000 chr3B 93.548 93 4 2 3711 3802 461741585 461741676 2.480000e-28 137.0
15 TraesCS3D01G196000 chr5A 88.732 284 30 1 4832 5115 83283333 83283052 3.790000e-91 346.0
16 TraesCS3D01G196000 chr5A 94.681 94 3 2 3710 3801 448109847 448109754 1.480000e-30 145.0
17 TraesCS3D01G196000 chr2B 86.972 284 32 4 4832 5115 61599197 61598919 1.070000e-81 315.0
18 TraesCS3D01G196000 chr2B 85.614 285 36 4 4831 5115 448076869 448076590 1.390000e-75 294.0
19 TraesCS3D01G196000 chr2B 94.565 92 3 2 3709 3798 796656291 796656200 1.920000e-29 141.0
20 TraesCS3D01G196000 chr2B 91.919 99 5 2 3700 3797 103270291 103270387 8.930000e-28 135.0
21 TraesCS3D01G196000 chr1B 86.316 285 33 5 4832 5114 58424222 58423942 6.430000e-79 305.0
22 TraesCS3D01G196000 chr1B 94.681 94 4 1 3712 3804 129095802 129095895 1.480000e-30 145.0
23 TraesCS3D01G196000 chr1B 83.908 87 14 0 3826 3912 104466521 104466607 3.280000e-12 84.2
24 TraesCS3D01G196000 chr6D 86.014 286 33 7 4832 5115 20358228 20358508 2.990000e-77 300.0
25 TraesCS3D01G196000 chr6D 84.561 285 35 4 4831 5115 102475871 102476146 1.810000e-69 274.0
26 TraesCS3D01G196000 chr6D 89.444 180 19 0 2 181 6238356 6238535 1.430000e-55 228.0
27 TraesCS3D01G196000 chr6D 92.708 96 5 2 3707 3801 268067204 268067110 2.480000e-28 137.0
28 TraesCS3D01G196000 chr2A 85.664 286 31 6 4831 5115 695164582 695164858 5.010000e-75 292.0
29 TraesCS3D01G196000 chr2A 86.188 181 24 1 1 181 622458721 622458542 1.450000e-45 195.0
30 TraesCS3D01G196000 chr7B 86.538 260 33 2 4832 5091 400644083 400643826 8.380000e-73 285.0
31 TraesCS3D01G196000 chr7D 90.000 180 18 0 2 181 556309260 556309439 3.080000e-57 233.0
32 TraesCS3D01G196000 chr7D 89.444 180 19 0 2 181 171327744 171327565 1.430000e-55 228.0
33 TraesCS3D01G196000 chr7D 88.333 180 21 0 2 181 171334539 171334360 3.100000e-52 217.0
34 TraesCS3D01G196000 chr7D 90.385 104 8 2 3696 3797 506141350 506141453 8.930000e-28 135.0
35 TraesCS3D01G196000 chr1D 88.889 180 20 0 2 181 288098645 288098466 6.670000e-54 222.0
36 TraesCS3D01G196000 chr1D 83.908 87 14 0 3826 3912 63635639 63635725 3.280000e-12 84.2
37 TraesCS3D01G196000 chr2D 85.635 181 23 1 1 181 46868235 46868058 2.430000e-43 187.0
38 TraesCS3D01G196000 chr1A 81.609 87 16 0 3826 3912 62613475 62613561 7.100000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G196000 chr3D 192055044 192060158 5114 False 9446 9446 100.000 1 5115 1 chr3D.!!$F3 5114
1 TraesCS3D01G196000 chr3D 144297792 144298480 688 False 800 800 87.904 4081 4774 1 chr3D.!!$F2 693
2 TraesCS3D01G196000 chr3A 262521827 262526258 4431 True 7339 7339 96.665 387 4790 1 chr3A.!!$R1 4403
3 TraesCS3D01G196000 chr3A 163929286 163929895 609 False 599 599 84.793 4142 4774 1 chr3A.!!$F2 632
4 TraesCS3D01G196000 chr3B 275911913 275917087 5174 True 3452 6545 90.047 1 4790 2 chr3B.!!$R3 4789
5 TraesCS3D01G196000 chr3B 207451760 207452511 751 False 730 730 84.774 4029 4774 1 chr3B.!!$F1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.186873 ATGGCAAGAATAGCAGGGGG 59.813 55.000 0.00 0.00 0.00 5.40 F
347 348 0.538746 AAGGAAACGGCCGGACAAAT 60.539 50.000 31.76 8.61 0.00 2.32 F
383 384 0.617249 AGCAAGGAGAGAGAGGGTGG 60.617 60.000 0.00 0.00 0.00 4.61 F
1818 2331 0.664761 CATCTTAGTTGGCCATGGCG 59.335 55.000 29.90 14.59 43.06 5.69 F
2064 2581 2.001838 TTATAACCGGGGGCCAGCA 61.002 57.895 6.32 0.00 0.00 4.41 F
3848 4366 1.531128 TGGCAAACAGATGGCTGCA 60.531 52.632 0.50 0.00 46.26 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1406 1919 0.031857 TTTTCACAGTTGCATGGCCG 59.968 50.000 0.00 0.00 0.00 6.13 R
2064 2581 0.329931 TACGGATGGCATTGGTTGGT 59.670 50.000 0.00 0.00 0.00 3.67 R
2071 2588 2.394632 TCTACTGGTACGGATGGCATT 58.605 47.619 0.00 0.00 38.67 3.56 R
2799 3316 0.833949 GGAGGAATTCGAGCCCTCTT 59.166 55.000 21.33 1.08 44.43 2.85 R
3869 4387 0.249911 GCCGGAAATCTGCCTCGTAT 60.250 55.000 5.05 0.00 0.00 3.06 R
5033 5628 0.165944 GTGTCGGCATGAACTTTCGG 59.834 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.043200 GCCTGGTCAAAGCGCCAC 62.043 66.667 2.29 0.00 0.00 5.01
83 84 0.603569 CGGGATTAGGACCTCGGATG 59.396 60.000 0.00 0.00 0.00 3.51
98 99 6.059484 ACCTCGGATGAACAACTTAAAAAGA 58.941 36.000 0.00 0.00 0.00 2.52
108 109 8.194769 TGAACAACTTAAAAAGATTTGGGACTC 58.805 33.333 0.00 0.00 0.00 3.36
131 132 9.582431 ACTCAGATATGCATTTTGAAAGAATTG 57.418 29.630 3.54 0.00 0.00 2.32
171 172 8.436156 CTTTTAGAAAAGAATTAAGACCGCAC 57.564 34.615 8.76 0.00 46.39 5.34
181 182 2.888834 AAGACCGCACTTGCATTTTT 57.111 40.000 1.48 0.00 42.21 1.94
248 249 2.353357 TGATGGCAAGAATAGCAGGG 57.647 50.000 0.00 0.00 0.00 4.45
250 251 0.186873 ATGGCAAGAATAGCAGGGGG 59.813 55.000 0.00 0.00 0.00 5.40
262 263 3.840132 AGGGGGCGGTGGGTTTTT 61.840 61.111 0.00 0.00 0.00 1.94
277 278 1.123928 TTTTTCAATTGGCGGGTGGT 58.876 45.000 5.42 0.00 0.00 4.16
318 319 6.183360 CGTTAGAGGAGAGAGGATATTGATCG 60.183 46.154 0.00 0.00 32.28 3.69
347 348 0.538746 AAGGAAACGGCCGGACAAAT 60.539 50.000 31.76 8.61 0.00 2.32
358 359 3.001838 GGCCGGACAAATCAAACAAAAAC 59.998 43.478 5.05 0.00 0.00 2.43
359 360 3.001838 GCCGGACAAATCAAACAAAAACC 59.998 43.478 5.05 0.00 0.00 3.27
360 361 4.184629 CCGGACAAATCAAACAAAAACCA 58.815 39.130 0.00 0.00 0.00 3.67
361 362 4.631813 CCGGACAAATCAAACAAAAACCAA 59.368 37.500 0.00 0.00 0.00 3.67
362 363 5.446607 CCGGACAAATCAAACAAAAACCAAC 60.447 40.000 0.00 0.00 0.00 3.77
363 364 5.120830 CGGACAAATCAAACAAAAACCAACA 59.879 36.000 0.00 0.00 0.00 3.33
364 365 6.347725 CGGACAAATCAAACAAAAACCAACAA 60.348 34.615 0.00 0.00 0.00 2.83
365 366 7.020602 GGACAAATCAAACAAAAACCAACAAG 58.979 34.615 0.00 0.00 0.00 3.16
366 367 6.377780 ACAAATCAAACAAAAACCAACAAGC 58.622 32.000 0.00 0.00 0.00 4.01
367 368 6.016777 ACAAATCAAACAAAAACCAACAAGCA 60.017 30.769 0.00 0.00 0.00 3.91
368 369 6.566197 AATCAAACAAAAACCAACAAGCAA 57.434 29.167 0.00 0.00 0.00 3.91
369 370 5.604010 TCAAACAAAAACCAACAAGCAAG 57.396 34.783 0.00 0.00 0.00 4.01
370 371 4.453819 TCAAACAAAAACCAACAAGCAAGG 59.546 37.500 0.00 0.00 0.00 3.61
371 372 3.971245 ACAAAAACCAACAAGCAAGGA 57.029 38.095 0.00 0.00 0.00 3.36
372 373 3.860641 ACAAAAACCAACAAGCAAGGAG 58.139 40.909 0.00 0.00 0.00 3.69
373 374 3.513515 ACAAAAACCAACAAGCAAGGAGA 59.486 39.130 0.00 0.00 0.00 3.71
374 375 4.114794 CAAAAACCAACAAGCAAGGAGAG 58.885 43.478 0.00 0.00 0.00 3.20
375 376 3.297134 AAACCAACAAGCAAGGAGAGA 57.703 42.857 0.00 0.00 0.00 3.10
376 377 2.557920 ACCAACAAGCAAGGAGAGAG 57.442 50.000 0.00 0.00 0.00 3.20
377 378 2.050144 ACCAACAAGCAAGGAGAGAGA 58.950 47.619 0.00 0.00 0.00 3.10
378 379 2.038295 ACCAACAAGCAAGGAGAGAGAG 59.962 50.000 0.00 0.00 0.00 3.20
379 380 2.614987 CCAACAAGCAAGGAGAGAGAGG 60.615 54.545 0.00 0.00 0.00 3.69
380 381 1.274712 ACAAGCAAGGAGAGAGAGGG 58.725 55.000 0.00 0.00 0.00 4.30
381 382 1.274712 CAAGCAAGGAGAGAGAGGGT 58.725 55.000 0.00 0.00 0.00 4.34
382 383 1.066286 CAAGCAAGGAGAGAGAGGGTG 60.066 57.143 0.00 0.00 0.00 4.61
383 384 0.617249 AGCAAGGAGAGAGAGGGTGG 60.617 60.000 0.00 0.00 0.00 4.61
384 385 1.904032 CAAGGAGAGAGAGGGTGGC 59.096 63.158 0.00 0.00 0.00 5.01
385 386 0.906756 CAAGGAGAGAGAGGGTGGCA 60.907 60.000 0.00 0.00 0.00 4.92
503 987 6.154534 TCCTGACTTCCGATTAGATCAAGAAA 59.845 38.462 0.00 0.00 0.00 2.52
719 1203 9.353999 CAAATAATGAGATGATATAACCGTCGA 57.646 33.333 0.00 0.00 0.00 4.20
723 1207 5.758924 TGAGATGATATAACCGTCGAGTTG 58.241 41.667 8.72 0.00 0.00 3.16
1011 1501 1.876799 TCGCACATCCGTTTTGTTGAT 59.123 42.857 0.00 0.00 0.00 2.57
1015 1505 4.026145 CGCACATCCGTTTTGTTGATTTTT 60.026 37.500 0.00 0.00 0.00 1.94
1190 1689 5.793675 CAAAGATTGCTCTGTAGTGATTCG 58.206 41.667 0.00 0.00 0.00 3.34
1228 1727 7.746475 CAGTTTGGTTCTTCGATTGTAGATTTC 59.254 37.037 0.00 0.00 0.00 2.17
1233 1732 7.710907 TGGTTCTTCGATTGTAGATTTCATAGG 59.289 37.037 0.00 0.00 0.00 2.57
1390 1903 8.691661 AGTTTATTTAGCTGTCTCCAGAAAAA 57.308 30.769 0.00 0.00 41.50 1.94
1660 2173 3.364366 GGAGCAAAGTTGACAAGATCACG 60.364 47.826 0.00 0.00 36.92 4.35
1818 2331 0.664761 CATCTTAGTTGGCCATGGCG 59.335 55.000 29.90 14.59 43.06 5.69
2064 2581 2.001838 TTATAACCGGGGGCCAGCA 61.002 57.895 6.32 0.00 0.00 4.41
2293 2810 2.724520 CTTGTGCAGGTTCAAGGCT 58.275 52.632 6.85 0.00 37.83 4.58
2330 2847 8.420222 CAAGATAATCTCTCTTCATGTAGGTGT 58.580 37.037 0.00 0.00 31.03 4.16
2355 2872 2.551912 CGGGCTGCCGTTTGACTTT 61.552 57.895 13.40 0.00 0.00 2.66
2405 2922 4.214758 TCAAGACTCAAGCATGACAATGTG 59.785 41.667 0.00 0.00 36.08 3.21
2680 3197 9.588096 TCAGTAATATAGAGCCATTCAAGACTA 57.412 33.333 0.00 0.00 0.00 2.59
2689 3206 5.994250 AGCCATTCAAGACTATAGCAAAGA 58.006 37.500 0.00 0.00 0.00 2.52
3214 3731 3.134623 CAGAGCCTTGTGACATGGGTATA 59.865 47.826 20.16 0.00 39.04 1.47
3241 3759 5.106515 GCCTTTTCAGATTCTACACTGGTTC 60.107 44.000 0.00 0.00 35.20 3.62
3670 4188 8.927675 TGACAAAGTAGTACACCCAATTAAAT 57.072 30.769 2.52 0.00 0.00 1.40
3721 4239 4.961099 GGAGGTAGTATGTTGTACTCCCTT 59.039 45.833 1.60 0.00 34.56 3.95
3848 4366 1.531128 TGGCAAACAGATGGCTGCA 60.531 52.632 0.50 0.00 46.26 4.41
3912 4430 1.202348 ACATGAGCATCGTCGTCAAGA 59.798 47.619 0.00 0.00 38.61 3.02
4001 4522 1.278985 TGATCTCCAACCGACTGCATT 59.721 47.619 0.00 0.00 0.00 3.56
4002 4523 1.936547 GATCTCCAACCGACTGCATTC 59.063 52.381 0.00 0.00 0.00 2.67
4003 4524 0.389817 TCTCCAACCGACTGCATTCG 60.390 55.000 18.59 18.59 38.80 3.34
4004 4525 1.970917 CTCCAACCGACTGCATTCGC 61.971 60.000 19.93 0.00 37.70 4.70
4006 4527 1.154413 CAACCGACTGCATTCGCAC 60.154 57.895 19.93 0.00 45.36 5.34
4007 4528 2.667318 AACCGACTGCATTCGCACG 61.667 57.895 19.93 9.85 45.36 5.34
4008 4529 2.809174 CCGACTGCATTCGCACGA 60.809 61.111 19.93 0.00 45.36 4.35
4009 4530 2.167219 CCGACTGCATTCGCACGAT 61.167 57.895 19.93 0.00 45.36 3.73
4010 4531 1.695893 CCGACTGCATTCGCACGATT 61.696 55.000 19.93 0.00 45.36 3.34
4112 4653 0.182775 AGGTGAGGTTTGGTGTGGTC 59.817 55.000 0.00 0.00 0.00 4.02
4146 4688 5.339530 GGGATCTCATTTTCTTCCTCCTTGA 60.340 44.000 0.00 0.00 0.00 3.02
4259 4813 1.140312 TGGTCACTCTTTGCCTTCCT 58.860 50.000 0.00 0.00 0.00 3.36
4403 4983 2.068519 CTTACAGCAGCACATCGTCAA 58.931 47.619 0.00 0.00 0.00 3.18
4432 5012 5.422970 ACCGGTGTAGGTACAGATAAATTGA 59.577 40.000 6.12 0.00 43.89 2.57
4455 5044 7.732996 TGATAAGTAGTAGAAACCAATAGCCC 58.267 38.462 0.00 0.00 0.00 5.19
4512 5102 2.948979 TCCAGAAACAACACGAAATGCT 59.051 40.909 0.00 0.00 0.00 3.79
4513 5103 4.130857 TCCAGAAACAACACGAAATGCTA 58.869 39.130 0.00 0.00 0.00 3.49
4546 5136 1.732809 GCCCTTTCGTAGTCAAAGCTC 59.267 52.381 0.00 0.00 30.61 4.09
4606 5196 3.181493 GCGTGCTCATTTGGAAGATGATT 60.181 43.478 0.00 0.00 33.39 2.57
4652 5242 2.103094 CTGGGTTGTCACTCTTGTCAGA 59.897 50.000 0.00 0.00 0.00 3.27
4777 5372 8.543293 AATCAATCAATGGTCAACATATCCTT 57.457 30.769 0.00 0.00 39.40 3.36
4790 5385 9.982651 GTCAACATATCCTTTATAGCACTAAGA 57.017 33.333 0.00 0.00 0.00 2.10
4807 5402 7.870445 AGCACTAAGATTTATAGCACTAAGAGC 59.130 37.037 0.00 0.00 0.00 4.09
4808 5403 7.653713 GCACTAAGATTTATAGCACTAAGAGCA 59.346 37.037 0.00 0.00 0.00 4.26
4809 5404 9.534565 CACTAAGATTTATAGCACTAAGAGCAA 57.465 33.333 0.00 0.00 0.00 3.91
4810 5405 9.535878 ACTAAGATTTATAGCACTAAGAGCAAC 57.464 33.333 0.00 0.00 0.00 4.17
4811 5406 9.757227 CTAAGATTTATAGCACTAAGAGCAACT 57.243 33.333 0.00 0.00 0.00 3.16
4812 5407 8.655651 AAGATTTATAGCACTAAGAGCAACTC 57.344 34.615 0.00 0.00 0.00 3.01
4813 5408 7.213678 AGATTTATAGCACTAAGAGCAACTCC 58.786 38.462 0.00 0.00 0.00 3.85
4814 5409 5.932619 TTATAGCACTAAGAGCAACTCCA 57.067 39.130 0.00 0.00 0.00 3.86
4815 5410 2.464157 AGCACTAAGAGCAACTCCAC 57.536 50.000 0.00 0.00 0.00 4.02
4816 5411 1.974236 AGCACTAAGAGCAACTCCACT 59.026 47.619 0.00 0.00 0.00 4.00
4817 5412 2.028567 AGCACTAAGAGCAACTCCACTC 60.029 50.000 0.00 0.00 0.00 3.51
4818 5413 2.600731 CACTAAGAGCAACTCCACTCG 58.399 52.381 0.00 0.00 37.99 4.18
4819 5414 2.029828 CACTAAGAGCAACTCCACTCGT 60.030 50.000 0.00 0.00 37.99 4.18
4820 5415 2.628657 ACTAAGAGCAACTCCACTCGTT 59.371 45.455 0.00 0.00 37.99 3.85
4821 5416 2.622064 AAGAGCAACTCCACTCGTTT 57.378 45.000 0.00 0.00 37.99 3.60
4822 5417 3.746045 AAGAGCAACTCCACTCGTTTA 57.254 42.857 0.00 0.00 37.99 2.01
4823 5418 3.746045 AGAGCAACTCCACTCGTTTAA 57.254 42.857 0.00 0.00 37.99 1.52
4824 5419 4.067972 AGAGCAACTCCACTCGTTTAAA 57.932 40.909 0.00 0.00 37.99 1.52
4825 5420 4.448210 AGAGCAACTCCACTCGTTTAAAA 58.552 39.130 0.00 0.00 37.99 1.52
4826 5421 4.879545 AGAGCAACTCCACTCGTTTAAAAA 59.120 37.500 0.00 0.00 37.99 1.94
4847 5442 1.318576 AAAAGAGCAACTCCAACGGG 58.681 50.000 0.00 0.00 0.00 5.28
4848 5443 0.537371 AAAGAGCAACTCCAACGGGG 60.537 55.000 0.00 0.00 38.37 5.73
4849 5444 3.056328 GAGCAACTCCAACGGGGC 61.056 66.667 0.00 0.00 36.21 5.80
4852 5447 3.047877 CAACTCCAACGGGGCGAC 61.048 66.667 0.00 0.00 36.21 5.19
4867 5462 4.974989 GACCCAAACGGACGGCGT 62.975 66.667 14.65 14.65 34.64 5.68
4868 5463 4.550697 ACCCAAACGGACGGCGTT 62.551 61.111 16.19 0.00 34.64 4.84
4869 5464 3.281395 CCCAAACGGACGGCGTTT 61.281 61.111 16.19 0.70 39.72 3.60
4870 5465 2.716864 CCAAACGGACGGCGTTTT 59.283 55.556 16.19 8.33 37.45 2.43
4871 5466 1.064458 CCAAACGGACGGCGTTTTT 59.936 52.632 16.19 11.54 37.45 1.94
4872 5467 1.203600 CCAAACGGACGGCGTTTTTG 61.204 55.000 24.20 24.20 37.45 2.44
4873 5468 0.523757 CAAACGGACGGCGTTTTTGT 60.524 50.000 23.44 14.66 37.45 2.83
4874 5469 0.248175 AAACGGACGGCGTTTTTGTC 60.248 50.000 16.19 0.00 36.32 3.18
4875 5470 2.050639 AACGGACGGCGTTTTTGTCC 62.051 55.000 16.19 8.73 46.91 4.02
4877 5472 2.426261 GACGGCGTTTTTGTCCGC 60.426 61.111 16.19 0.00 46.49 5.54
4883 5478 0.496851 GCGTTTTTGTCCGCTTTTCG 59.503 50.000 0.00 0.00 46.08 3.46
4884 5479 1.817609 CGTTTTTGTCCGCTTTTCGT 58.182 45.000 0.00 0.00 36.19 3.85
4885 5480 1.771291 CGTTTTTGTCCGCTTTTCGTC 59.229 47.619 0.00 0.00 36.19 4.20
4886 5481 2.114056 GTTTTTGTCCGCTTTTCGTCC 58.886 47.619 0.00 0.00 36.19 4.79
4887 5482 0.305313 TTTTGTCCGCTTTTCGTCCG 59.695 50.000 0.00 0.00 36.19 4.79
4888 5483 0.810823 TTTGTCCGCTTTTCGTCCGT 60.811 50.000 0.00 0.00 36.19 4.69
4889 5484 0.810823 TTGTCCGCTTTTCGTCCGTT 60.811 50.000 0.00 0.00 36.19 4.44
4890 5485 0.810823 TGTCCGCTTTTCGTCCGTTT 60.811 50.000 0.00 0.00 36.19 3.60
4891 5486 0.383860 GTCCGCTTTTCGTCCGTTTG 60.384 55.000 0.00 0.00 36.19 2.93
4892 5487 1.082366 CCGCTTTTCGTCCGTTTGG 60.082 57.895 0.00 0.00 36.19 3.28
4893 5488 1.082366 CGCTTTTCGTCCGTTTGGG 60.082 57.895 0.00 0.00 35.24 4.12
4894 5489 1.778027 CGCTTTTCGTCCGTTTGGGT 61.778 55.000 0.00 0.00 37.00 4.51
4895 5490 0.382873 GCTTTTCGTCCGTTTGGGTT 59.617 50.000 0.00 0.00 37.00 4.11
4896 5491 1.862411 GCTTTTCGTCCGTTTGGGTTG 60.862 52.381 0.00 0.00 37.00 3.77
4897 5492 0.739561 TTTTCGTCCGTTTGGGTTGG 59.260 50.000 0.00 0.00 37.00 3.77
4898 5493 1.726533 TTTCGTCCGTTTGGGTTGGC 61.727 55.000 0.00 0.00 37.00 4.52
4899 5494 3.666253 CGTCCGTTTGGGTTGGCC 61.666 66.667 0.00 0.00 37.00 5.36
4900 5495 3.666253 GTCCGTTTGGGTTGGCCG 61.666 66.667 0.00 0.00 37.00 6.13
4901 5496 4.192453 TCCGTTTGGGTTGGCCGT 62.192 61.111 0.00 0.00 37.00 5.68
4902 5497 3.666253 CCGTTTGGGTTGGCCGTC 61.666 66.667 0.00 0.00 34.97 4.79
4903 5498 3.666253 CGTTTGGGTTGGCCGTCC 61.666 66.667 0.00 2.32 34.97 4.79
4904 5499 3.666253 GTTTGGGTTGGCCGTCCG 61.666 66.667 0.00 0.00 34.97 4.79
4927 5522 4.367023 CGTCCGCCCCGTTTGAGA 62.367 66.667 0.00 0.00 0.00 3.27
4928 5523 2.267961 GTCCGCCCCGTTTGAGAT 59.732 61.111 0.00 0.00 0.00 2.75
4929 5524 1.376812 GTCCGCCCCGTTTGAGATT 60.377 57.895 0.00 0.00 0.00 2.40
4930 5525 0.958876 GTCCGCCCCGTTTGAGATTT 60.959 55.000 0.00 0.00 0.00 2.17
4931 5526 0.958382 TCCGCCCCGTTTGAGATTTG 60.958 55.000 0.00 0.00 0.00 2.32
4932 5527 1.506262 CGCCCCGTTTGAGATTTGG 59.494 57.895 0.00 0.00 0.00 3.28
4933 5528 1.890174 GCCCCGTTTGAGATTTGGG 59.110 57.895 0.00 0.00 39.69 4.12
4934 5529 0.898326 GCCCCGTTTGAGATTTGGGT 60.898 55.000 0.00 0.00 38.23 4.51
4935 5530 1.173913 CCCCGTTTGAGATTTGGGTC 58.826 55.000 0.00 0.00 38.23 4.46
4936 5531 0.802494 CCCGTTTGAGATTTGGGTCG 59.198 55.000 0.00 0.00 35.05 4.79
4937 5532 0.802494 CCGTTTGAGATTTGGGTCGG 59.198 55.000 0.00 0.00 0.00 4.79
4938 5533 0.168128 CGTTTGAGATTTGGGTCGGC 59.832 55.000 0.00 0.00 0.00 5.54
4939 5534 1.534729 GTTTGAGATTTGGGTCGGCT 58.465 50.000 0.00 0.00 0.00 5.52
4940 5535 1.200020 GTTTGAGATTTGGGTCGGCTG 59.800 52.381 0.00 0.00 0.00 4.85
4941 5536 0.400213 TTGAGATTTGGGTCGGCTGT 59.600 50.000 0.00 0.00 0.00 4.40
4942 5537 0.321564 TGAGATTTGGGTCGGCTGTG 60.322 55.000 0.00 0.00 0.00 3.66
4943 5538 1.648467 GAGATTTGGGTCGGCTGTGC 61.648 60.000 0.00 0.00 0.00 4.57
4944 5539 3.039202 GATTTGGGTCGGCTGTGCG 62.039 63.158 0.00 0.00 0.00 5.34
4964 5559 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
4965 5560 3.428282 AACGCGCCGACCCATTTC 61.428 61.111 5.73 0.00 0.00 2.17
4966 5561 4.690719 ACGCGCCGACCCATTTCA 62.691 61.111 5.73 0.00 0.00 2.69
4967 5562 3.202001 CGCGCCGACCCATTTCAT 61.202 61.111 0.00 0.00 0.00 2.57
4968 5563 2.408835 GCGCCGACCCATTTCATG 59.591 61.111 0.00 0.00 0.00 3.07
4969 5564 2.406616 GCGCCGACCCATTTCATGT 61.407 57.895 0.00 0.00 0.00 3.21
4970 5565 1.721487 CGCCGACCCATTTCATGTC 59.279 57.895 0.00 0.00 0.00 3.06
4971 5566 1.714899 CGCCGACCCATTTCATGTCC 61.715 60.000 0.00 0.00 0.00 4.02
4972 5567 1.714899 GCCGACCCATTTCATGTCCG 61.715 60.000 0.00 0.00 0.00 4.79
4973 5568 1.714899 CCGACCCATTTCATGTCCGC 61.715 60.000 0.00 0.00 0.00 5.54
4974 5569 1.024046 CGACCCATTTCATGTCCGCA 61.024 55.000 0.00 0.00 0.00 5.69
4975 5570 0.451783 GACCCATTTCATGTCCGCAC 59.548 55.000 0.00 0.00 0.00 5.34
4976 5571 0.251121 ACCCATTTCATGTCCGCACA 60.251 50.000 0.00 0.00 36.78 4.57
4977 5572 0.171007 CCCATTTCATGTCCGCACAC 59.829 55.000 0.00 0.00 34.48 3.82
4978 5573 1.167851 CCATTTCATGTCCGCACACT 58.832 50.000 0.00 0.00 34.48 3.55
4979 5574 2.355197 CCATTTCATGTCCGCACACTA 58.645 47.619 0.00 0.00 34.48 2.74
4980 5575 2.945008 CCATTTCATGTCCGCACACTAT 59.055 45.455 0.00 0.00 34.48 2.12
4981 5576 3.378112 CCATTTCATGTCCGCACACTATT 59.622 43.478 0.00 0.00 34.48 1.73
4982 5577 4.142403 CCATTTCATGTCCGCACACTATTT 60.142 41.667 0.00 0.00 34.48 1.40
4983 5578 5.401550 CATTTCATGTCCGCACACTATTTT 58.598 37.500 0.00 0.00 34.48 1.82
4984 5579 5.446143 TTTCATGTCCGCACACTATTTTT 57.554 34.783 0.00 0.00 34.48 1.94
5002 5597 3.869747 TTTTTAAAAGGCCCGCGAC 57.130 47.368 8.23 0.00 0.00 5.19
5003 5598 0.314618 TTTTTAAAAGGCCCGCGACC 59.685 50.000 8.23 9.22 0.00 4.79
5004 5599 0.822532 TTTTAAAAGGCCCGCGACCA 60.823 50.000 18.56 0.00 0.00 4.02
5005 5600 0.609681 TTTAAAAGGCCCGCGACCAT 60.610 50.000 18.56 5.55 0.00 3.55
5006 5601 0.252479 TTAAAAGGCCCGCGACCATA 59.748 50.000 18.56 7.35 0.00 2.74
5007 5602 0.179067 TAAAAGGCCCGCGACCATAG 60.179 55.000 18.56 0.00 0.00 2.23
5008 5603 4.547367 AAGGCCCGCGACCATAGC 62.547 66.667 18.56 6.76 0.00 2.97
5010 5605 4.971125 GGCCCGCGACCATAGCTC 62.971 72.222 8.23 0.00 0.00 4.09
5011 5606 4.221422 GCCCGCGACCATAGCTCA 62.221 66.667 8.23 0.00 0.00 4.26
5012 5607 2.737180 CCCGCGACCATAGCTCAT 59.263 61.111 8.23 0.00 0.00 2.90
5013 5608 1.665916 CCCGCGACCATAGCTCATG 60.666 63.158 8.23 0.00 0.00 3.07
5014 5609 2.313172 CCGCGACCATAGCTCATGC 61.313 63.158 8.23 0.00 40.05 4.06
5015 5610 2.313172 CGCGACCATAGCTCATGCC 61.313 63.158 0.00 0.00 40.80 4.40
5016 5611 1.227645 GCGACCATAGCTCATGCCA 60.228 57.895 0.00 0.00 40.80 4.92
5017 5612 1.226686 GCGACCATAGCTCATGCCAG 61.227 60.000 0.00 0.00 40.80 4.85
5018 5613 1.226686 CGACCATAGCTCATGCCAGC 61.227 60.000 0.00 0.00 40.80 4.85
5019 5614 1.226686 GACCATAGCTCATGCCAGCG 61.227 60.000 0.00 0.00 44.82 5.18
5020 5615 1.964891 CCATAGCTCATGCCAGCGG 60.965 63.158 0.00 0.00 44.82 5.52
5031 5626 3.803082 CCAGCGGCCATGTCGTTG 61.803 66.667 2.24 12.96 41.18 4.10
5032 5627 4.465512 CAGCGGCCATGTCGTTGC 62.466 66.667 2.24 0.00 34.97 4.17
5043 5638 4.859400 TCGTTGCCCGAAAGTTCA 57.141 50.000 0.00 0.00 44.03 3.18
5044 5639 3.315765 TCGTTGCCCGAAAGTTCAT 57.684 47.368 0.00 0.00 44.03 2.57
5045 5640 0.871722 TCGTTGCCCGAAAGTTCATG 59.128 50.000 0.00 0.00 44.03 3.07
5046 5641 0.729140 CGTTGCCCGAAAGTTCATGC 60.729 55.000 0.00 0.00 39.56 4.06
5047 5642 0.388520 GTTGCCCGAAAGTTCATGCC 60.389 55.000 0.00 0.00 0.00 4.40
5048 5643 1.861542 TTGCCCGAAAGTTCATGCCG 61.862 55.000 0.00 0.00 0.00 5.69
5049 5644 2.038269 GCCCGAAAGTTCATGCCGA 61.038 57.895 0.00 0.00 0.00 5.54
5050 5645 1.794222 CCCGAAAGTTCATGCCGAC 59.206 57.895 0.00 0.00 0.00 4.79
5051 5646 0.953471 CCCGAAAGTTCATGCCGACA 60.953 55.000 0.00 0.00 0.00 4.35
5052 5647 0.165944 CCGAAAGTTCATGCCGACAC 59.834 55.000 0.00 0.00 0.00 3.67
5053 5648 0.165944 CGAAAGTTCATGCCGACACC 59.834 55.000 0.00 0.00 0.00 4.16
5054 5649 1.234821 GAAAGTTCATGCCGACACCA 58.765 50.000 0.00 0.00 0.00 4.17
5055 5650 1.812571 GAAAGTTCATGCCGACACCAT 59.187 47.619 0.00 0.00 0.00 3.55
5056 5651 1.167851 AAGTTCATGCCGACACCATG 58.832 50.000 0.00 0.00 41.03 3.66
5057 5652 1.137404 GTTCATGCCGACACCATGC 59.863 57.895 0.00 0.00 39.83 4.06
5058 5653 2.045708 TTCATGCCGACACCATGCC 61.046 57.895 0.00 0.00 39.83 4.40
5059 5654 2.751036 CATGCCGACACCATGCCA 60.751 61.111 0.00 0.00 34.34 4.92
5060 5655 2.438975 ATGCCGACACCATGCCAG 60.439 61.111 0.00 0.00 0.00 4.85
5074 5669 3.130819 CCAGCGCCGGCATACAAA 61.131 61.111 28.98 0.00 43.41 2.83
5075 5670 2.480610 CCAGCGCCGGCATACAAAT 61.481 57.895 28.98 0.00 43.41 2.32
5076 5671 1.298563 CAGCGCCGGCATACAAATG 60.299 57.895 28.98 8.44 43.41 2.32
5091 5686 7.109006 CATACAAATGCCAGTTTCAGAAAAC 57.891 36.000 0.00 0.00 44.24 2.43
5092 5687 5.083533 ACAAATGCCAGTTTCAGAAAACA 57.916 34.783 0.00 0.00 45.94 2.83
5093 5688 4.869861 ACAAATGCCAGTTTCAGAAAACAC 59.130 37.500 0.00 0.00 45.94 3.32
5094 5689 5.111293 CAAATGCCAGTTTCAGAAAACACT 58.889 37.500 0.00 0.00 45.94 3.55
5095 5690 3.781079 TGCCAGTTTCAGAAAACACTG 57.219 42.857 0.00 1.91 45.94 3.66
5096 5691 2.159254 TGCCAGTTTCAGAAAACACTGC 60.159 45.455 7.67 5.10 45.94 4.40
5097 5692 2.159254 GCCAGTTTCAGAAAACACTGCA 60.159 45.455 7.67 0.00 45.94 4.41
5098 5693 3.438360 CCAGTTTCAGAAAACACTGCAC 58.562 45.455 7.67 0.00 45.94 4.57
5099 5694 3.119531 CCAGTTTCAGAAAACACTGCACA 60.120 43.478 7.67 0.00 45.94 4.57
5100 5695 4.484236 CAGTTTCAGAAAACACTGCACAA 58.516 39.130 0.00 0.00 45.94 3.33
5101 5696 5.104374 CAGTTTCAGAAAACACTGCACAAT 58.896 37.500 0.00 0.00 45.94 2.71
5102 5697 5.577945 CAGTTTCAGAAAACACTGCACAATT 59.422 36.000 0.00 0.00 45.94 2.32
5103 5698 5.807011 AGTTTCAGAAAACACTGCACAATTC 59.193 36.000 0.00 0.00 45.94 2.17
5104 5699 3.951306 TCAGAAAACACTGCACAATTCG 58.049 40.909 0.00 0.00 37.75 3.34
5105 5700 3.044986 CAGAAAACACTGCACAATTCGG 58.955 45.455 0.00 0.00 0.00 4.30
5106 5701 1.786579 GAAAACACTGCACAATTCGGC 59.213 47.619 0.00 0.00 0.00 5.54
5107 5702 1.032014 AAACACTGCACAATTCGGCT 58.968 45.000 0.00 0.00 0.00 5.52
5108 5703 0.311790 AACACTGCACAATTCGGCTG 59.688 50.000 0.00 0.00 35.41 4.85
5109 5704 1.210931 CACTGCACAATTCGGCTGG 59.789 57.895 0.00 1.73 33.82 4.85
5110 5705 2.180017 CTGCACAATTCGGCTGGC 59.820 61.111 0.00 0.00 0.00 4.85
5111 5706 2.596923 TGCACAATTCGGCTGGCA 60.597 55.556 1.08 0.00 0.00 4.92
5112 5707 2.126346 GCACAATTCGGCTGGCAC 60.126 61.111 1.08 0.00 0.00 5.01
5113 5708 2.918345 GCACAATTCGGCTGGCACA 61.918 57.895 1.08 0.00 0.00 4.57
5114 5709 1.081242 CACAATTCGGCTGGCACAC 60.081 57.895 1.08 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.499737 CCCGCTAACCAGCTTGCG 61.500 66.667 0.00 0.00 46.26 4.85
55 56 2.819284 CCTAATCCCGTCTGCCCCC 61.819 68.421 0.00 0.00 0.00 5.40
56 57 1.764854 TCCTAATCCCGTCTGCCCC 60.765 63.158 0.00 0.00 0.00 5.80
57 58 1.446366 GTCCTAATCCCGTCTGCCC 59.554 63.158 0.00 0.00 0.00 5.36
58 59 1.049289 AGGTCCTAATCCCGTCTGCC 61.049 60.000 0.00 0.00 0.00 4.85
59 60 0.389757 GAGGTCCTAATCCCGTCTGC 59.610 60.000 0.00 0.00 0.00 4.26
60 61 0.669077 CGAGGTCCTAATCCCGTCTG 59.331 60.000 0.00 0.00 0.00 3.51
61 62 0.467659 CCGAGGTCCTAATCCCGTCT 60.468 60.000 0.00 0.00 0.00 4.18
62 63 0.466922 TCCGAGGTCCTAATCCCGTC 60.467 60.000 0.00 0.00 0.00 4.79
63 64 0.187851 ATCCGAGGTCCTAATCCCGT 59.812 55.000 0.00 0.00 0.00 5.28
64 65 0.603569 CATCCGAGGTCCTAATCCCG 59.396 60.000 0.00 0.00 0.00 5.14
65 66 2.011122 TCATCCGAGGTCCTAATCCC 57.989 55.000 0.00 0.00 0.00 3.85
66 67 2.698797 TGTTCATCCGAGGTCCTAATCC 59.301 50.000 0.00 0.00 0.00 3.01
67 68 4.120589 GTTGTTCATCCGAGGTCCTAATC 58.879 47.826 0.00 0.00 0.00 1.75
68 69 3.775316 AGTTGTTCATCCGAGGTCCTAAT 59.225 43.478 0.00 0.00 0.00 1.73
69 70 3.170717 AGTTGTTCATCCGAGGTCCTAA 58.829 45.455 0.00 0.00 0.00 2.69
83 84 8.194769 TGAGTCCCAAATCTTTTTAAGTTGTTC 58.805 33.333 0.00 0.00 0.00 3.18
98 99 6.608405 TCAAAATGCATATCTGAGTCCCAAAT 59.392 34.615 0.00 0.00 0.00 2.32
108 109 7.982919 TCCCAATTCTTTCAAAATGCATATCTG 59.017 33.333 0.00 0.00 0.00 2.90
131 132 4.918588 TCTAAAAGAGTTGATTGGGTCCC 58.081 43.478 0.00 0.00 0.00 4.46
146 147 8.290325 AGTGCGGTCTTAATTCTTTTCTAAAAG 58.710 33.333 8.58 8.58 45.17 2.27
162 163 2.888834 AAAAATGCAAGTGCGGTCTT 57.111 40.000 0.00 0.00 45.83 3.01
197 198 6.605194 TGCATGGTTATTTACATACCACACAT 59.395 34.615 0.00 0.00 32.85 3.21
199 200 6.127869 TGTGCATGGTTATTTACATACCACAC 60.128 38.462 0.00 0.00 35.49 3.82
200 201 5.946377 TGTGCATGGTTATTTACATACCACA 59.054 36.000 0.00 0.00 36.77 4.17
229 230 1.133699 CCCCTGCTATTCTTGCCATCA 60.134 52.381 0.00 0.00 0.00 3.07
230 231 1.613836 CCCCTGCTATTCTTGCCATC 58.386 55.000 0.00 0.00 0.00 3.51
231 232 0.186873 CCCCCTGCTATTCTTGCCAT 59.813 55.000 0.00 0.00 0.00 4.40
232 233 1.614711 CCCCCTGCTATTCTTGCCA 59.385 57.895 0.00 0.00 0.00 4.92
233 234 1.829970 GCCCCCTGCTATTCTTGCC 60.830 63.158 0.00 0.00 36.87 4.52
234 235 2.189499 CGCCCCCTGCTATTCTTGC 61.189 63.158 0.00 0.00 38.05 4.01
248 249 0.394938 AATTGAAAAACCCACCGCCC 59.605 50.000 0.00 0.00 0.00 6.13
250 251 1.507562 CCAATTGAAAAACCCACCGC 58.492 50.000 7.12 0.00 0.00 5.68
262 263 2.282816 CCACCACCCGCCAATTGA 60.283 61.111 7.12 0.00 0.00 2.57
296 297 6.214615 ACTCGATCAATATCCTCTCTCCTCTA 59.785 42.308 0.00 0.00 0.00 2.43
318 319 4.437794 CCGGCCGTTTCCTTTTTATTACTC 60.438 45.833 26.12 0.00 0.00 2.59
347 348 4.453819 CCTTGCTTGTTGGTTTTTGTTTGA 59.546 37.500 0.00 0.00 0.00 2.69
358 359 2.614987 CCTCTCTCTCCTTGCTTGTTGG 60.615 54.545 0.00 0.00 0.00 3.77
359 360 2.614987 CCCTCTCTCTCCTTGCTTGTTG 60.615 54.545 0.00 0.00 0.00 3.33
360 361 1.627834 CCCTCTCTCTCCTTGCTTGTT 59.372 52.381 0.00 0.00 0.00 2.83
361 362 1.274712 CCCTCTCTCTCCTTGCTTGT 58.725 55.000 0.00 0.00 0.00 3.16
362 363 1.066286 CACCCTCTCTCTCCTTGCTTG 60.066 57.143 0.00 0.00 0.00 4.01
363 364 1.274712 CACCCTCTCTCTCCTTGCTT 58.725 55.000 0.00 0.00 0.00 3.91
364 365 0.617249 CCACCCTCTCTCTCCTTGCT 60.617 60.000 0.00 0.00 0.00 3.91
365 366 1.904032 CCACCCTCTCTCTCCTTGC 59.096 63.158 0.00 0.00 0.00 4.01
366 367 0.906756 TGCCACCCTCTCTCTCCTTG 60.907 60.000 0.00 0.00 0.00 3.61
367 368 0.178891 TTGCCACCCTCTCTCTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
368 369 0.907230 GTTGCCACCCTCTCTCTCCT 60.907 60.000 0.00 0.00 0.00 3.69
369 370 1.599576 GTTGCCACCCTCTCTCTCC 59.400 63.158 0.00 0.00 0.00 3.71
370 371 1.216710 CGTTGCCACCCTCTCTCTC 59.783 63.158 0.00 0.00 0.00 3.20
371 372 2.948720 GCGTTGCCACCCTCTCTCT 61.949 63.158 0.00 0.00 0.00 3.10
372 373 2.435059 GCGTTGCCACCCTCTCTC 60.435 66.667 0.00 0.00 0.00 3.20
373 374 3.241530 TGCGTTGCCACCCTCTCT 61.242 61.111 0.00 0.00 0.00 3.10
374 375 2.743928 CTGCGTTGCCACCCTCTC 60.744 66.667 0.00 0.00 0.00 3.20
377 378 4.892965 TTGCTGCGTTGCCACCCT 62.893 61.111 0.00 0.00 0.00 4.34
378 379 4.645921 GTTGCTGCGTTGCCACCC 62.646 66.667 0.00 0.00 0.00 4.61
379 380 4.645921 GGTTGCTGCGTTGCCACC 62.646 66.667 8.66 8.66 40.67 4.61
380 381 3.423162 TTGGTTGCTGCGTTGCCAC 62.423 57.895 0.00 0.00 0.00 5.01
381 382 3.143515 TTGGTTGCTGCGTTGCCA 61.144 55.556 0.00 0.00 0.00 4.92
382 383 2.658268 GTTGGTTGCTGCGTTGCC 60.658 61.111 0.00 0.00 0.00 4.52
383 384 1.945662 CAGTTGGTTGCTGCGTTGC 60.946 57.895 0.00 0.00 0.00 4.17
384 385 1.299316 CCAGTTGGTTGCTGCGTTG 60.299 57.895 0.00 0.00 32.93 4.10
385 386 2.489275 CCCAGTTGGTTGCTGCGTT 61.489 57.895 0.00 0.00 32.93 4.84
503 987 3.528078 GGATACCTTCCCTTCCTCCTTTT 59.472 47.826 0.00 0.00 38.75 2.27
516 1000 2.029221 GCGGAGGCGGATACCTTC 59.971 66.667 0.00 0.00 41.32 3.46
523 1007 3.141488 GAGAAGAGCGGAGGCGGA 61.141 66.667 0.00 0.00 46.35 5.54
719 1203 1.658686 TTTGCGCCGTTTCACCAACT 61.659 50.000 4.18 0.00 32.53 3.16
723 1207 0.802607 TTTGTTTGCGCCGTTTCACC 60.803 50.000 4.18 0.00 0.00 4.02
1024 1523 1.227674 GCACCCCATCGCTTCCTAG 60.228 63.158 0.00 0.00 0.00 3.02
1190 1689 4.702131 AGAACCAAACTGGATTCATAGTGC 59.298 41.667 0.00 0.00 40.96 4.40
1204 1703 7.581476 TGAAATCTACAATCGAAGAACCAAAC 58.419 34.615 0.00 0.00 43.58 2.93
1390 1903 5.278957 GCATGGCCGAAAGTGGAATTATTAT 60.279 40.000 0.00 0.00 0.00 1.28
1406 1919 0.031857 TTTTCACAGTTGCATGGCCG 59.968 50.000 0.00 0.00 0.00 6.13
1660 2173 4.949856 TCTTTCTGCCATATGAAACTTCCC 59.050 41.667 3.65 0.00 0.00 3.97
1765 2278 5.276270 CCAAATCTATGAAGTTCGGCAATG 58.724 41.667 0.00 0.00 0.00 2.82
1778 2291 3.949754 TGCAAAGCTCTCCCAAATCTATG 59.050 43.478 0.00 0.00 0.00 2.23
2064 2581 0.329931 TACGGATGGCATTGGTTGGT 59.670 50.000 0.00 0.00 0.00 3.67
2071 2588 2.394632 TCTACTGGTACGGATGGCATT 58.605 47.619 0.00 0.00 38.67 3.56
2167 2684 4.280174 TGCGTATGAACCCTCTCCTATAAC 59.720 45.833 0.00 0.00 0.00 1.89
2293 2810 8.386012 AGAGAGATTATCTTGGAAGGAAAGAA 57.614 34.615 0.00 0.00 38.84 2.52
2355 2872 2.813754 CCGAGACCTGCAAAAGAAATGA 59.186 45.455 0.00 0.00 0.00 2.57
2405 2922 2.496470 ACAGTACCCGAGAAGTTGGATC 59.504 50.000 0.00 0.00 0.00 3.36
2537 3054 1.667510 GGCCCAAACAAACATGCCG 60.668 57.895 0.00 0.00 0.00 5.69
2680 3197 5.641209 GCCGTAGATTCATCATCTTTGCTAT 59.359 40.000 0.00 0.00 39.47 2.97
2689 3206 2.288457 CCACGAGCCGTAGATTCATCAT 60.288 50.000 0.00 0.00 38.32 2.45
2799 3316 0.833949 GGAGGAATTCGAGCCCTCTT 59.166 55.000 21.33 1.08 44.43 2.85
3214 3731 5.486526 CAGTGTAGAATCTGAAAAGGCTCT 58.513 41.667 0.00 0.00 34.02 4.09
3484 4002 5.584253 AGCTTCTCTGTGTACGATGTAAT 57.416 39.130 0.00 0.00 0.00 1.89
3621 4139 3.954258 CCACAAGAGAAAGGTTCCTTGTT 59.046 43.478 15.89 0.00 42.83 2.83
3670 4188 8.651391 TTTCTAGATGTAAGACGTTTTGACAA 57.349 30.769 0.83 0.00 0.00 3.18
3721 4239 7.931578 AAAAACATCTTACATTATGGGACGA 57.068 32.000 0.00 0.00 0.00 4.20
3766 4284 7.112779 CCTCTGTCCCATAATGTAAGACTTTT 58.887 38.462 0.00 0.00 0.00 2.27
3869 4387 0.249911 GCCGGAAATCTGCCTCGTAT 60.250 55.000 5.05 0.00 0.00 3.06
4004 4525 1.325640 CACCAGATCTTCGCAATCGTG 59.674 52.381 0.00 0.00 36.96 4.35
4005 4526 1.204704 TCACCAGATCTTCGCAATCGT 59.795 47.619 0.00 0.00 36.96 3.73
4006 4527 1.926561 TCACCAGATCTTCGCAATCG 58.073 50.000 0.00 0.00 0.00 3.34
4007 4528 2.032204 GCATCACCAGATCTTCGCAATC 60.032 50.000 0.00 0.00 30.20 2.67
4008 4529 1.945394 GCATCACCAGATCTTCGCAAT 59.055 47.619 0.00 0.00 30.20 3.56
4009 4530 1.065926 AGCATCACCAGATCTTCGCAA 60.066 47.619 0.00 0.00 30.20 4.85
4010 4531 0.538584 AGCATCACCAGATCTTCGCA 59.461 50.000 0.00 0.00 30.20 5.10
4015 4546 1.419387 GCCCTAAGCATCACCAGATCT 59.581 52.381 0.00 0.00 42.97 2.75
4048 4579 1.943693 CAACACCACGCCGCAAAAG 60.944 57.895 0.00 0.00 0.00 2.27
4057 4588 3.247563 GTTGACATGTACAACACCACG 57.752 47.619 24.17 0.00 44.49 4.94
4089 4620 0.916086 ACACCAAACCTCACCTCACA 59.084 50.000 0.00 0.00 0.00 3.58
4112 4653 0.914644 ATGAGATCCCACCACACCAG 59.085 55.000 0.00 0.00 0.00 4.00
4259 4813 2.371179 TCCCAAATTGCTGGCATTTCAA 59.629 40.909 0.00 0.00 34.88 2.69
4403 4983 1.891150 CTGTACCTACACCGGTTGTCT 59.109 52.381 2.97 0.00 39.91 3.41
4432 5012 6.850231 AGGGGCTATTGGTTTCTACTACTTAT 59.150 38.462 0.00 0.00 0.00 1.73
4512 5102 4.253685 CGAAAGGGCTGATGAGAAAACTA 58.746 43.478 0.00 0.00 0.00 2.24
4513 5103 3.077359 CGAAAGGGCTGATGAGAAAACT 58.923 45.455 0.00 0.00 0.00 2.66
4546 5136 2.095263 CCAACAAACTAGCAACGATGGG 60.095 50.000 0.00 0.00 0.00 4.00
4606 5196 1.188219 AAACCGAGCAGGAGCAGAGA 61.188 55.000 5.19 0.00 45.00 3.10
4702 5293 0.248825 CAGGACAGAAGATCGAGGCG 60.249 60.000 0.00 0.00 0.00 5.52
4790 5385 6.763610 GTGGAGTTGCTCTTAGTGCTATAAAT 59.236 38.462 7.78 0.00 0.00 1.40
4791 5386 6.070767 AGTGGAGTTGCTCTTAGTGCTATAAA 60.071 38.462 7.78 0.00 0.00 1.40
4792 5387 5.422331 AGTGGAGTTGCTCTTAGTGCTATAA 59.578 40.000 7.78 0.00 0.00 0.98
4793 5388 4.956700 AGTGGAGTTGCTCTTAGTGCTATA 59.043 41.667 7.78 0.00 0.00 1.31
4794 5389 3.772025 AGTGGAGTTGCTCTTAGTGCTAT 59.228 43.478 7.78 0.00 0.00 2.97
4795 5390 3.165875 AGTGGAGTTGCTCTTAGTGCTA 58.834 45.455 7.78 0.00 0.00 3.49
4796 5391 1.974236 AGTGGAGTTGCTCTTAGTGCT 59.026 47.619 7.78 0.00 0.00 4.40
4797 5392 2.342179 GAGTGGAGTTGCTCTTAGTGC 58.658 52.381 0.00 0.00 0.00 4.40
4798 5393 2.029828 ACGAGTGGAGTTGCTCTTAGTG 60.030 50.000 0.00 0.00 0.00 2.74
4799 5394 2.240279 ACGAGTGGAGTTGCTCTTAGT 58.760 47.619 0.00 0.00 0.00 2.24
4800 5395 3.305398 AACGAGTGGAGTTGCTCTTAG 57.695 47.619 0.00 0.00 0.00 2.18
4801 5396 3.746045 AAACGAGTGGAGTTGCTCTTA 57.254 42.857 0.00 0.00 31.43 2.10
4802 5397 2.622064 AAACGAGTGGAGTTGCTCTT 57.378 45.000 0.00 0.00 31.43 2.85
4803 5398 3.746045 TTAAACGAGTGGAGTTGCTCT 57.254 42.857 0.00 0.00 31.43 4.09
4804 5399 4.806342 TTTTAAACGAGTGGAGTTGCTC 57.194 40.909 0.00 0.00 31.43 4.26
4827 5422 1.681264 CCCGTTGGAGTTGCTCTTTTT 59.319 47.619 0.00 0.00 0.00 1.94
4828 5423 1.318576 CCCGTTGGAGTTGCTCTTTT 58.681 50.000 0.00 0.00 0.00 2.27
4829 5424 0.537371 CCCCGTTGGAGTTGCTCTTT 60.537 55.000 0.00 0.00 35.39 2.52
4830 5425 1.073199 CCCCGTTGGAGTTGCTCTT 59.927 57.895 0.00 0.00 35.39 2.85
4831 5426 2.750350 CCCCGTTGGAGTTGCTCT 59.250 61.111 0.00 0.00 35.39 4.09
4832 5427 3.056328 GCCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 35.39 4.26
4835 5430 3.047877 GTCGCCCCGTTGGAGTTG 61.048 66.667 0.00 0.00 35.07 3.16
4836 5431 4.324991 GGTCGCCCCGTTGGAGTT 62.325 66.667 0.00 0.00 35.07 3.01
4858 5453 2.250190 GGACAAAAACGCCGTCCG 59.750 61.111 0.00 0.00 39.86 4.79
4859 5454 2.250190 CGGACAAAAACGCCGTCC 59.750 61.111 0.00 0.00 44.79 4.79
4865 5460 1.771291 GACGAAAAGCGGACAAAAACG 59.229 47.619 0.00 0.00 46.49 3.60
4866 5461 2.114056 GGACGAAAAGCGGACAAAAAC 58.886 47.619 0.00 0.00 46.49 2.43
4867 5462 1.268133 CGGACGAAAAGCGGACAAAAA 60.268 47.619 0.00 0.00 46.49 1.94
4868 5463 0.305313 CGGACGAAAAGCGGACAAAA 59.695 50.000 0.00 0.00 46.49 2.44
4869 5464 0.810823 ACGGACGAAAAGCGGACAAA 60.811 50.000 0.00 0.00 46.49 2.83
4870 5465 0.810823 AACGGACGAAAAGCGGACAA 60.811 50.000 0.00 0.00 46.49 3.18
4871 5466 0.810823 AAACGGACGAAAAGCGGACA 60.811 50.000 0.00 0.00 46.49 4.02
4872 5467 0.383860 CAAACGGACGAAAAGCGGAC 60.384 55.000 0.00 0.00 46.49 4.79
4873 5468 1.500512 CCAAACGGACGAAAAGCGGA 61.501 55.000 0.00 0.00 46.49 5.54
4874 5469 1.082366 CCAAACGGACGAAAAGCGG 60.082 57.895 0.00 0.00 46.49 5.52
4875 5470 1.778027 ACCCAAACGGACGAAAAGCG 61.778 55.000 0.00 0.00 39.89 4.68
4876 5471 0.382873 AACCCAAACGGACGAAAAGC 59.617 50.000 0.00 0.00 34.64 3.51
4877 5472 1.268845 CCAACCCAAACGGACGAAAAG 60.269 52.381 0.00 0.00 34.64 2.27
4878 5473 0.739561 CCAACCCAAACGGACGAAAA 59.260 50.000 0.00 0.00 34.64 2.29
4879 5474 1.726533 GCCAACCCAAACGGACGAAA 61.727 55.000 0.00 0.00 34.64 3.46
4880 5475 2.188161 GCCAACCCAAACGGACGAA 61.188 57.895 0.00 0.00 34.64 3.85
4881 5476 2.592287 GCCAACCCAAACGGACGA 60.592 61.111 0.00 0.00 34.64 4.20
4882 5477 3.666253 GGCCAACCCAAACGGACG 61.666 66.667 0.00 0.00 34.64 4.79
4883 5478 3.666253 CGGCCAACCCAAACGGAC 61.666 66.667 2.24 0.00 34.64 4.79
4884 5479 4.192453 ACGGCCAACCCAAACGGA 62.192 61.111 2.24 0.00 34.64 4.69
4885 5480 3.666253 GACGGCCAACCCAAACGG 61.666 66.667 2.24 0.00 37.81 4.44
4886 5481 3.666253 GGACGGCCAACCCAAACG 61.666 66.667 0.00 0.00 0.00 3.60
4887 5482 3.666253 CGGACGGCCAACCCAAAC 61.666 66.667 8.76 0.00 0.00 2.93
4910 5505 3.659089 ATCTCAAACGGGGCGGACG 62.659 63.158 0.00 0.00 37.36 4.79
4911 5506 0.958876 AAATCTCAAACGGGGCGGAC 60.959 55.000 0.00 0.00 0.00 4.79
4912 5507 0.958382 CAAATCTCAAACGGGGCGGA 60.958 55.000 0.00 0.00 0.00 5.54
4913 5508 1.506262 CAAATCTCAAACGGGGCGG 59.494 57.895 0.00 0.00 0.00 6.13
4914 5509 1.506262 CCAAATCTCAAACGGGGCG 59.494 57.895 0.00 0.00 0.00 6.13
4915 5510 0.898326 ACCCAAATCTCAAACGGGGC 60.898 55.000 0.00 0.00 41.55 5.80
4916 5511 1.173913 GACCCAAATCTCAAACGGGG 58.826 55.000 0.00 0.00 41.55 5.73
4917 5512 0.802494 CGACCCAAATCTCAAACGGG 59.198 55.000 0.00 0.00 43.02 5.28
4918 5513 0.802494 CCGACCCAAATCTCAAACGG 59.198 55.000 0.00 0.00 0.00 4.44
4919 5514 0.168128 GCCGACCCAAATCTCAAACG 59.832 55.000 0.00 0.00 0.00 3.60
4920 5515 1.200020 CAGCCGACCCAAATCTCAAAC 59.800 52.381 0.00 0.00 0.00 2.93
4921 5516 1.202879 ACAGCCGACCCAAATCTCAAA 60.203 47.619 0.00 0.00 0.00 2.69
4922 5517 0.400213 ACAGCCGACCCAAATCTCAA 59.600 50.000 0.00 0.00 0.00 3.02
4923 5518 0.321564 CACAGCCGACCCAAATCTCA 60.322 55.000 0.00 0.00 0.00 3.27
4924 5519 1.648467 GCACAGCCGACCCAAATCTC 61.648 60.000 0.00 0.00 0.00 2.75
4925 5520 1.675641 GCACAGCCGACCCAAATCT 60.676 57.895 0.00 0.00 0.00 2.40
4926 5521 2.877691 GCACAGCCGACCCAAATC 59.122 61.111 0.00 0.00 0.00 2.17
4927 5522 3.055719 CGCACAGCCGACCCAAAT 61.056 61.111 0.00 0.00 0.00 2.32
4947 5542 3.661025 GAAATGGGTCGGCGCGTTG 62.661 63.158 12.62 0.00 36.96 4.10
4948 5543 3.428282 GAAATGGGTCGGCGCGTT 61.428 61.111 8.43 5.61 38.23 4.84
4949 5544 3.969250 ATGAAATGGGTCGGCGCGT 62.969 57.895 8.43 0.00 0.00 6.01
4950 5545 3.202001 ATGAAATGGGTCGGCGCG 61.202 61.111 0.00 0.00 0.00 6.86
4951 5546 2.408835 CATGAAATGGGTCGGCGC 59.591 61.111 0.00 0.00 41.79 6.53
4961 5556 5.643379 AAAATAGTGTGCGGACATGAAAT 57.357 34.783 14.45 1.83 33.63 2.17
4962 5557 5.446143 AAAAATAGTGTGCGGACATGAAA 57.554 34.783 14.45 0.00 33.63 2.69
4984 5579 0.314618 GGTCGCGGGCCTTTTAAAAA 59.685 50.000 6.13 0.00 0.00 1.94
4985 5580 0.822532 TGGTCGCGGGCCTTTTAAAA 60.823 50.000 18.50 0.00 0.00 1.52
4986 5581 0.609681 ATGGTCGCGGGCCTTTTAAA 60.610 50.000 18.50 1.46 0.00 1.52
4987 5582 0.252479 TATGGTCGCGGGCCTTTTAA 59.748 50.000 18.50 2.08 0.00 1.52
4988 5583 0.179067 CTATGGTCGCGGGCCTTTTA 60.179 55.000 18.50 9.10 0.00 1.52
4989 5584 1.451387 CTATGGTCGCGGGCCTTTT 60.451 57.895 18.50 8.57 0.00 2.27
4990 5585 2.189521 CTATGGTCGCGGGCCTTT 59.810 61.111 18.50 10.51 0.00 3.11
4991 5586 4.547367 GCTATGGTCGCGGGCCTT 62.547 66.667 18.50 15.15 0.00 4.35
4993 5588 4.971125 GAGCTATGGTCGCGGGCC 62.971 72.222 6.13 10.17 0.00 5.80
4994 5589 3.521529 ATGAGCTATGGTCGCGGGC 62.522 63.158 6.13 0.00 32.15 6.13
4995 5590 1.665916 CATGAGCTATGGTCGCGGG 60.666 63.158 6.13 0.00 32.95 6.13
4996 5591 2.313172 GCATGAGCTATGGTCGCGG 61.313 63.158 6.13 0.00 37.26 6.46
4997 5592 2.313172 GGCATGAGCTATGGTCGCG 61.313 63.158 0.00 0.00 41.70 5.87
4998 5593 1.226686 CTGGCATGAGCTATGGTCGC 61.227 60.000 0.00 0.00 41.70 5.19
4999 5594 1.226686 GCTGGCATGAGCTATGGTCG 61.227 60.000 0.00 0.00 41.70 4.79
5000 5595 1.226686 CGCTGGCATGAGCTATGGTC 61.227 60.000 0.00 0.00 41.70 4.02
5001 5596 1.227764 CGCTGGCATGAGCTATGGT 60.228 57.895 0.00 0.00 41.70 3.55
5002 5597 1.964891 CCGCTGGCATGAGCTATGG 60.965 63.158 0.00 0.00 41.70 2.74
5003 5598 3.651645 CCGCTGGCATGAGCTATG 58.348 61.111 0.00 0.00 41.70 2.23
5014 5609 3.803082 CAACGACATGGCCGCTGG 61.803 66.667 9.69 0.00 0.00 4.85
5015 5610 4.465512 GCAACGACATGGCCGCTG 62.466 66.667 0.00 0.00 0.00 5.18
5027 5622 0.729140 GCATGAACTTTCGGGCAACG 60.729 55.000 0.00 0.00 46.11 4.10
5028 5623 0.388520 GGCATGAACTTTCGGGCAAC 60.389 55.000 0.00 0.00 32.57 4.17
5029 5624 1.861542 CGGCATGAACTTTCGGGCAA 61.862 55.000 0.00 0.00 32.57 4.52
5030 5625 2.331893 CGGCATGAACTTTCGGGCA 61.332 57.895 0.00 0.00 32.57 5.36
5031 5626 2.038269 TCGGCATGAACTTTCGGGC 61.038 57.895 0.00 0.00 0.00 6.13
5032 5627 0.953471 TGTCGGCATGAACTTTCGGG 60.953 55.000 0.00 0.00 0.00 5.14
5033 5628 0.165944 GTGTCGGCATGAACTTTCGG 59.834 55.000 0.00 0.00 0.00 4.30
5034 5629 0.165944 GGTGTCGGCATGAACTTTCG 59.834 55.000 0.00 0.00 0.00 3.46
5035 5630 1.234821 TGGTGTCGGCATGAACTTTC 58.765 50.000 0.00 0.00 0.00 2.62
5036 5631 1.541147 CATGGTGTCGGCATGAACTTT 59.459 47.619 0.00 0.00 0.00 2.66
5037 5632 1.167851 CATGGTGTCGGCATGAACTT 58.832 50.000 0.00 0.00 0.00 2.66
5038 5633 1.308069 GCATGGTGTCGGCATGAACT 61.308 55.000 0.00 0.00 0.00 3.01
5039 5634 1.137404 GCATGGTGTCGGCATGAAC 59.863 57.895 0.00 0.00 0.00 3.18
5040 5635 2.045708 GGCATGGTGTCGGCATGAA 61.046 57.895 0.00 0.00 0.00 2.57
5041 5636 2.438254 GGCATGGTGTCGGCATGA 60.438 61.111 0.00 0.00 0.00 3.07
5042 5637 2.751036 TGGCATGGTGTCGGCATG 60.751 61.111 0.00 0.00 32.00 4.06
5043 5638 2.438975 CTGGCATGGTGTCGGCAT 60.439 61.111 0.00 0.00 37.05 4.40
5057 5652 2.480610 ATTTGTATGCCGGCGCTGG 61.481 57.895 31.57 31.57 35.36 4.85
5058 5653 1.298563 CATTTGTATGCCGGCGCTG 60.299 57.895 23.90 9.96 35.36 5.18
5059 5654 3.110139 CATTTGTATGCCGGCGCT 58.890 55.556 23.90 14.61 35.36 5.92
5066 5661 6.346838 GTTTTCTGAAACTGGCATTTGTATGC 60.347 38.462 1.58 1.58 46.14 3.14
5067 5662 6.700960 TGTTTTCTGAAACTGGCATTTGTATG 59.299 34.615 1.58 0.00 44.33 2.39
5068 5663 6.701400 GTGTTTTCTGAAACTGGCATTTGTAT 59.299 34.615 1.58 0.00 44.33 2.29
5069 5664 6.039616 GTGTTTTCTGAAACTGGCATTTGTA 58.960 36.000 1.58 0.00 44.33 2.41
5070 5665 4.869861 GTGTTTTCTGAAACTGGCATTTGT 59.130 37.500 1.58 0.00 44.33 2.83
5071 5666 5.005971 CAGTGTTTTCTGAAACTGGCATTTG 59.994 40.000 11.22 5.31 44.33 2.32
5072 5667 5.111293 CAGTGTTTTCTGAAACTGGCATTT 58.889 37.500 11.22 0.00 44.33 2.32
5073 5668 4.685924 CAGTGTTTTCTGAAACTGGCATT 58.314 39.130 11.22 1.13 44.33 3.56
5074 5669 3.491447 GCAGTGTTTTCTGAAACTGGCAT 60.491 43.478 17.69 0.00 44.33 4.40
5075 5670 2.159254 GCAGTGTTTTCTGAAACTGGCA 60.159 45.455 17.69 7.11 44.33 4.92
5076 5671 2.159254 TGCAGTGTTTTCTGAAACTGGC 60.159 45.455 17.69 12.26 44.33 4.85
5077 5672 3.119531 TGTGCAGTGTTTTCTGAAACTGG 60.120 43.478 17.69 5.05 44.33 4.00
5078 5673 4.095410 TGTGCAGTGTTTTCTGAAACTG 57.905 40.909 13.72 13.72 44.33 3.16
5079 5674 4.782019 TTGTGCAGTGTTTTCTGAAACT 57.218 36.364 1.58 0.00 44.33 2.66
5080 5675 5.275881 CGAATTGTGCAGTGTTTTCTGAAAC 60.276 40.000 1.58 0.00 44.29 2.78
5081 5676 4.797868 CGAATTGTGCAGTGTTTTCTGAAA 59.202 37.500 0.00 0.00 37.61 2.69
5082 5677 4.350346 CGAATTGTGCAGTGTTTTCTGAA 58.650 39.130 0.00 0.00 37.61 3.02
5083 5678 3.243035 CCGAATTGTGCAGTGTTTTCTGA 60.243 43.478 0.00 0.00 37.61 3.27
5084 5679 3.044986 CCGAATTGTGCAGTGTTTTCTG 58.955 45.455 0.00 0.00 38.35 3.02
5085 5680 2.543653 GCCGAATTGTGCAGTGTTTTCT 60.544 45.455 0.00 0.00 0.00 2.52
5086 5681 1.786579 GCCGAATTGTGCAGTGTTTTC 59.213 47.619 0.00 0.00 0.00 2.29
5087 5682 1.408702 AGCCGAATTGTGCAGTGTTTT 59.591 42.857 0.00 0.00 0.00 2.43
5088 5683 1.032014 AGCCGAATTGTGCAGTGTTT 58.968 45.000 0.00 0.00 0.00 2.83
5089 5684 0.311790 CAGCCGAATTGTGCAGTGTT 59.688 50.000 0.00 0.00 0.00 3.32
5090 5685 1.518056 CCAGCCGAATTGTGCAGTGT 61.518 55.000 0.00 0.00 0.00 3.55
5091 5686 1.210931 CCAGCCGAATTGTGCAGTG 59.789 57.895 0.00 0.00 0.00 3.66
5092 5687 2.629656 GCCAGCCGAATTGTGCAGT 61.630 57.895 0.00 0.00 0.00 4.40
5093 5688 2.180017 GCCAGCCGAATTGTGCAG 59.820 61.111 0.00 0.00 0.00 4.41
5094 5689 2.596923 TGCCAGCCGAATTGTGCA 60.597 55.556 0.00 0.00 0.00 4.57
5095 5690 2.126346 GTGCCAGCCGAATTGTGC 60.126 61.111 0.00 0.00 0.00 4.57
5096 5691 1.081242 GTGTGCCAGCCGAATTGTG 60.081 57.895 0.00 0.00 0.00 3.33
5097 5692 3.354678 GTGTGCCAGCCGAATTGT 58.645 55.556 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.