Multiple sequence alignment - TraesCS3D01G195500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G195500 chr3D 100.000 6594 0 0 1 6594 189451257 189457850 0.000000e+00 12177.0
1 TraesCS3D01G195500 chr3D 90.587 2231 188 16 1003 3228 190253673 190255886 0.000000e+00 2937.0
2 TraesCS3D01G195500 chr3D 93.333 540 36 0 3989 4528 190256728 190257267 0.000000e+00 798.0
3 TraesCS3D01G195500 chr3D 96.970 231 5 1 1 229 438200498 438200728 2.880000e-103 387.0
4 TraesCS3D01G195500 chr3D 96.916 227 7 0 1 227 438208505 438208731 1.340000e-101 381.0
5 TraesCS3D01G195500 chr3D 96.476 227 7 1 1 226 30379341 30379567 2.250000e-99 374.0
6 TraesCS3D01G195500 chr3D 91.628 215 18 0 5256 5470 190258537 190258751 1.390000e-76 298.0
7 TraesCS3D01G195500 chr3B 97.138 5066 105 15 862 5895 274521562 274516505 0.000000e+00 8516.0
8 TraesCS3D01G195500 chr3B 90.766 2220 185 15 1014 3228 275345888 275343684 0.000000e+00 2946.0
9 TraesCS3D01G195500 chr3B 92.963 540 38 0 3989 4528 275342821 275342282 0.000000e+00 787.0
10 TraesCS3D01G195500 chr3B 88.528 523 46 3 286 798 379093146 379092628 7.260000e-174 621.0
11 TraesCS3D01G195500 chr3B 87.262 526 51 6 286 798 70327300 70327822 2.650000e-163 586.0
12 TraesCS3D01G195500 chr3B 90.571 350 10 11 6248 6594 274514759 274514430 6.070000e-120 442.0
13 TraesCS3D01G195500 chr3B 94.030 201 12 0 5850 6050 274516509 274516309 8.310000e-79 305.0
14 TraesCS3D01G195500 chr3B 91.589 107 7 2 5071 5177 275338392 275338288 5.330000e-31 147.0
15 TraesCS3D01G195500 chr3A 98.173 2518 36 3 1046 3558 249860903 249858391 0.000000e+00 4386.0
16 TraesCS3D01G195500 chr3A 90.259 2238 190 18 999 3228 261353843 261351626 0.000000e+00 2900.0
17 TraesCS3D01G195500 chr3A 96.560 1279 37 3 3628 4899 249858390 249857112 0.000000e+00 2111.0
18 TraesCS3D01G195500 chr3A 94.522 1077 34 8 4891 5963 249855072 249854017 0.000000e+00 1639.0
19 TraesCS3D01G195500 chr3A 93.519 540 35 0 3989 4528 261350750 261350211 0.000000e+00 804.0
20 TraesCS3D01G195500 chr3A 87.863 585 54 6 265 839 249862558 249861981 0.000000e+00 671.0
21 TraesCS3D01G195500 chr3A 89.213 445 43 4 286 729 20500980 20501420 9.660000e-153 551.0
22 TraesCS3D01G195500 chr3A 91.120 259 9 6 6338 6594 249853524 249853278 8.190000e-89 339.0
23 TraesCS3D01G195500 chr3A 91.346 208 18 0 5263 5470 261348938 261348731 1.080000e-72 285.0
24 TraesCS3D01G195500 chr3A 95.918 98 3 1 846 943 249861756 249861660 2.460000e-34 158.0
25 TraesCS3D01G195500 chr3A 91.589 107 7 2 5071 5177 261349613 261349509 5.330000e-31 147.0
26 TraesCS3D01G195500 chr3A 92.079 101 7 1 5966 6066 249853755 249853656 2.480000e-29 141.0
27 TraesCS3D01G195500 chr3A 79.888 179 22 6 629 798 322878470 322878643 1.160000e-22 119.0
28 TraesCS3D01G195500 chr1B 89.231 520 48 4 286 798 96504913 96504395 1.550000e-180 643.0
29 TraesCS3D01G195500 chr1B 93.506 231 13 2 1 229 183300715 183300485 6.330000e-90 342.0
30 TraesCS3D01G195500 chr1B 85.714 70 10 0 4721 4790 510600318 510600387 2.550000e-09 75.0
31 TraesCS3D01G195500 chr4A 88.719 523 48 3 286 798 573376180 573376701 4.340000e-176 628.0
32 TraesCS3D01G195500 chr4B 90.179 448 42 2 286 732 550473390 550472944 3.430000e-162 582.0
33 TraesCS3D01G195500 chr2D 86.973 522 54 8 286 798 386514236 386513720 5.730000e-160 575.0
34 TraesCS3D01G195500 chr2D 89.462 446 45 1 286 729 15628881 15628436 4.460000e-156 562.0
35 TraesCS3D01G195500 chr2D 86.957 184 14 9 6087 6265 579129817 579129995 1.450000e-46 198.0
36 TraesCS3D01G195500 chr2D 80.986 142 23 3 4733 4873 626993007 626992869 6.990000e-20 110.0
37 TraesCS3D01G195500 chr5D 97.357 227 5 1 1 226 150656453 150656227 1.040000e-102 385.0
38 TraesCS3D01G195500 chr5D 96.930 228 5 2 1 227 481547251 481547025 1.340000e-101 381.0
39 TraesCS3D01G195500 chr5D 95.633 229 9 1 1 228 150664336 150664108 3.760000e-97 366.0
40 TraesCS3D01G195500 chr5D 92.105 152 8 4 6103 6251 204324458 204324608 1.860000e-50 211.0
41 TraesCS3D01G195500 chr5D 94.286 35 2 0 238 272 271070096 271070130 3.000000e-03 54.7
42 TraesCS3D01G195500 chr1D 95.595 227 9 1 1 226 180349655 180349881 4.860000e-96 363.0
43 TraesCS3D01G195500 chr7A 92.982 228 15 1 2 229 102254994 102255220 1.370000e-86 331.0
44 TraesCS3D01G195500 chr7A 91.250 160 9 5 6104 6259 677696397 677696239 5.180000e-51 213.0
45 TraesCS3D01G195500 chr5B 76.033 484 104 9 4014 4489 81800670 81801149 2.380000e-59 241.0
46 TraesCS3D01G195500 chr5B 75.983 483 105 8 4014 4489 81809480 81809958 8.550000e-59 239.0
47 TraesCS3D01G195500 chr5B 93.377 151 7 3 6104 6252 129721796 129721945 3.100000e-53 220.0
48 TraesCS3D01G195500 chr5B 88.690 168 12 5 6087 6251 536228706 536228869 1.450000e-46 198.0
49 TraesCS3D01G195500 chr6A 89.474 171 11 5 6086 6253 609592948 609593114 6.700000e-50 209.0
50 TraesCS3D01G195500 chr5A 91.558 154 9 4 6104 6254 558675646 558675494 6.700000e-50 209.0
51 TraesCS3D01G195500 chr5A 89.157 166 11 6 6089 6251 239531125 239531286 4.030000e-47 200.0
52 TraesCS3D01G195500 chr2A 89.157 166 11 6 6089 6251 180983841 180984002 4.030000e-47 200.0
53 TraesCS3D01G195500 chr2A 81.208 149 23 4 4733 4880 757679354 757679210 1.500000e-21 115.0
54 TraesCS3D01G195500 chr2A 97.727 44 1 0 229 272 88743844 88743887 7.090000e-10 76.8
55 TraesCS3D01G195500 chr2B 82.514 183 18 3 626 798 783706856 783706678 1.480000e-31 148.0
56 TraesCS3D01G195500 chr2B 81.208 149 24 3 4733 4880 768377830 768377685 4.180000e-22 117.0
57 TraesCS3D01G195500 chr2B 80.537 149 25 3 4733 4880 768402212 768402067 1.940000e-20 111.0
58 TraesCS3D01G195500 chr2B 89.474 57 5 1 4819 4874 768352134 768352078 3.300000e-08 71.3
59 TraesCS3D01G195500 chr2B 89.091 55 3 3 4728 4781 39697933 39697985 1.530000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G195500 chr3D 189451257 189457850 6593 False 12177.000000 12177 100.000000 1 6594 1 chr3D.!!$F2 6593
1 TraesCS3D01G195500 chr3D 190253673 190258751 5078 False 1344.333333 2937 91.849333 1003 5470 3 chr3D.!!$F5 4467
2 TraesCS3D01G195500 chr3B 274514430 274521562 7132 True 3087.666667 8516 93.913000 862 6594 3 chr3B.!!$R2 5732
3 TraesCS3D01G195500 chr3B 275338288 275345888 7600 True 1293.333333 2946 91.772667 1014 5177 3 chr3B.!!$R3 4163
4 TraesCS3D01G195500 chr3B 379092628 379093146 518 True 621.000000 621 88.528000 286 798 1 chr3B.!!$R1 512
5 TraesCS3D01G195500 chr3B 70327300 70327822 522 False 586.000000 586 87.262000 286 798 1 chr3B.!!$F1 512
6 TraesCS3D01G195500 chr3A 249853278 249862558 9280 True 1349.285714 4386 93.747857 265 6594 7 chr3A.!!$R1 6329
7 TraesCS3D01G195500 chr3A 261348731 261353843 5112 True 1034.000000 2900 91.678250 999 5470 4 chr3A.!!$R2 4471
8 TraesCS3D01G195500 chr1B 96504395 96504913 518 True 643.000000 643 89.231000 286 798 1 chr1B.!!$R1 512
9 TraesCS3D01G195500 chr4A 573376180 573376701 521 False 628.000000 628 88.719000 286 798 1 chr4A.!!$F1 512
10 TraesCS3D01G195500 chr2D 386513720 386514236 516 True 575.000000 575 86.973000 286 798 1 chr2D.!!$R2 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.108329 CCGGGCGTCACAATTAGTCT 60.108 55.000 0.00 0.0 0.00 3.24 F
966 1584 0.179108 GAGATTTGGACCCGGTCTCG 60.179 60.000 17.27 0.0 32.47 4.04 F
1275 2176 1.153745 GCCGACGCTCTTCATCACT 60.154 57.895 0.00 0.0 0.00 3.41 F
2933 3840 0.722676 TCCTCATACCTCCCCCAACT 59.277 55.000 0.00 0.0 0.00 3.16 F
3680 4634 0.657368 GAGTTTTGTGCCGTTGCTCG 60.657 55.000 0.00 0.0 38.71 5.03 F
5497 12816 0.030638 GCAACCTGTCGCAATTGTGT 59.969 50.000 18.08 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2983 1.087501 CTAAGTTCGGGCTGGAAAGC 58.912 55.000 0.00 0.00 0.00 3.51 R
2817 3724 1.298014 CACCTCCTCCAGCCTCAAC 59.702 63.158 0.00 0.00 0.00 3.18 R
3231 4138 0.955428 CTTGTGGGCTAGCTTGCGAA 60.955 55.000 15.72 1.73 0.00 4.70 R
3806 4767 2.363359 GCATTTCCTCTGCCCAAATAGG 59.637 50.000 0.00 0.00 33.44 2.57 R
5586 12905 1.552337 TGCGAGCTTCCTCTTCTCATT 59.448 47.619 0.00 0.00 35.90 2.57 R
6394 15585 0.616395 TGCTCACCATACCGGGAAGA 60.616 55.000 6.32 0.00 40.22 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.772973 AACATTTTATAAAAGTGGGGTTTCTTC 57.227 29.630 15.45 0.00 0.00 2.87
32 33 8.929487 ACATTTTATAAAAGTGGGGTTTCTTCA 58.071 29.630 15.45 0.00 0.00 3.02
33 34 9.203421 CATTTTATAAAAGTGGGGTTTCTTCAC 57.797 33.333 15.45 0.00 0.00 3.18
34 35 6.904463 TTATAAAAGTGGGGTTTCTTCACC 57.096 37.500 0.00 0.00 35.88 4.02
35 36 2.838637 AAAGTGGGGTTTCTTCACCA 57.161 45.000 0.00 0.00 38.79 4.17
42 43 4.514781 GGGGTTTCTTCACCACAATTAC 57.485 45.455 0.00 0.00 40.42 1.89
43 44 3.257375 GGGGTTTCTTCACCACAATTACC 59.743 47.826 0.00 0.00 40.42 2.85
44 45 3.257375 GGGTTTCTTCACCACAATTACCC 59.743 47.826 0.00 0.00 38.79 3.69
45 46 3.257375 GGTTTCTTCACCACAATTACCCC 59.743 47.826 0.00 0.00 36.73 4.95
46 47 4.149598 GTTTCTTCACCACAATTACCCCT 58.850 43.478 0.00 0.00 0.00 4.79
47 48 3.433306 TCTTCACCACAATTACCCCTG 57.567 47.619 0.00 0.00 0.00 4.45
48 49 1.818674 CTTCACCACAATTACCCCTGC 59.181 52.381 0.00 0.00 0.00 4.85
49 50 0.774276 TCACCACAATTACCCCTGCA 59.226 50.000 0.00 0.00 0.00 4.41
50 51 1.357420 TCACCACAATTACCCCTGCAT 59.643 47.619 0.00 0.00 0.00 3.96
51 52 2.578480 TCACCACAATTACCCCTGCATA 59.422 45.455 0.00 0.00 0.00 3.14
52 53 3.204158 TCACCACAATTACCCCTGCATAT 59.796 43.478 0.00 0.00 0.00 1.78
53 54 3.960102 CACCACAATTACCCCTGCATATT 59.040 43.478 0.00 0.00 0.00 1.28
54 55 4.405358 CACCACAATTACCCCTGCATATTT 59.595 41.667 0.00 0.00 0.00 1.40
55 56 5.029474 ACCACAATTACCCCTGCATATTTT 58.971 37.500 0.00 0.00 0.00 1.82
56 57 5.104982 ACCACAATTACCCCTGCATATTTTG 60.105 40.000 0.00 0.00 0.00 2.44
57 58 5.358922 CACAATTACCCCTGCATATTTTGG 58.641 41.667 0.00 0.00 0.00 3.28
58 59 4.141733 ACAATTACCCCTGCATATTTTGGC 60.142 41.667 0.00 0.00 0.00 4.52
59 60 2.836636 TACCCCTGCATATTTTGGCA 57.163 45.000 0.00 0.00 38.52 4.92
60 61 1.194218 ACCCCTGCATATTTTGGCAC 58.806 50.000 0.00 0.00 35.86 5.01
61 62 1.193323 CCCCTGCATATTTTGGCACA 58.807 50.000 0.00 0.00 35.86 4.57
76 77 4.481930 TGGCACAACTCGAACATTTTAG 57.518 40.909 0.00 0.00 31.92 1.85
77 78 3.880490 TGGCACAACTCGAACATTTTAGT 59.120 39.130 0.00 0.00 31.92 2.24
78 79 4.336993 TGGCACAACTCGAACATTTTAGTT 59.663 37.500 0.00 0.00 31.92 2.24
79 80 5.163602 TGGCACAACTCGAACATTTTAGTTT 60.164 36.000 0.00 0.00 31.92 2.66
80 81 5.746721 GGCACAACTCGAACATTTTAGTTTT 59.253 36.000 0.00 0.00 29.93 2.43
81 82 6.913673 GGCACAACTCGAACATTTTAGTTTTA 59.086 34.615 0.00 0.00 29.93 1.52
82 83 7.593644 GGCACAACTCGAACATTTTAGTTTTAT 59.406 33.333 0.00 0.00 29.93 1.40
83 84 9.601971 GCACAACTCGAACATTTTAGTTTTATA 57.398 29.630 0.00 0.00 29.93 0.98
107 108 7.302350 AGTTTGAAAACTATTGTTGTTTGCC 57.698 32.000 6.65 0.00 46.75 4.52
108 109 7.102993 AGTTTGAAAACTATTGTTGTTTGCCT 58.897 30.769 6.65 0.00 46.75 4.75
109 110 7.606073 AGTTTGAAAACTATTGTTGTTTGCCTT 59.394 29.630 6.65 0.00 46.75 4.35
110 111 7.913674 TTGAAAACTATTGTTGTTTGCCTTT 57.086 28.000 0.00 0.00 37.64 3.11
111 112 9.436957 TTTGAAAACTATTGTTGTTTGCCTTTA 57.563 25.926 0.00 0.00 37.64 1.85
112 113 9.436957 TTGAAAACTATTGTTGTTTGCCTTTAA 57.563 25.926 0.00 0.00 37.64 1.52
113 114 9.606631 TGAAAACTATTGTTGTTTGCCTTTAAT 57.393 25.926 0.00 0.00 37.64 1.40
142 143 9.715123 AATTTTGAATTTGAATCGGTTTTGAAC 57.285 25.926 0.00 0.00 0.00 3.18
143 144 8.485976 TTTTGAATTTGAATCGGTTTTGAACT 57.514 26.923 0.00 0.00 0.00 3.01
144 145 9.587772 TTTTGAATTTGAATCGGTTTTGAACTA 57.412 25.926 0.00 0.00 0.00 2.24
145 146 9.587772 TTTGAATTTGAATCGGTTTTGAACTAA 57.412 25.926 0.00 0.00 0.00 2.24
146 147 8.568732 TGAATTTGAATCGGTTTTGAACTAAC 57.431 30.769 0.00 0.00 0.00 2.34
147 148 7.650104 TGAATTTGAATCGGTTTTGAACTAACC 59.350 33.333 0.00 0.00 41.31 2.85
148 149 5.441709 TTGAATCGGTTTTGAACTAACCC 57.558 39.130 0.00 0.00 41.62 4.11
149 150 3.822167 TGAATCGGTTTTGAACTAACCCC 59.178 43.478 0.00 0.00 41.62 4.95
150 151 3.512219 ATCGGTTTTGAACTAACCCCA 57.488 42.857 0.00 0.00 41.62 4.96
151 152 2.853705 TCGGTTTTGAACTAACCCCAG 58.146 47.619 0.00 0.00 41.62 4.45
152 153 2.438763 TCGGTTTTGAACTAACCCCAGA 59.561 45.455 0.00 0.00 41.62 3.86
153 154 3.073356 TCGGTTTTGAACTAACCCCAGAT 59.927 43.478 0.00 0.00 41.62 2.90
154 155 3.824443 CGGTTTTGAACTAACCCCAGATT 59.176 43.478 0.00 0.00 41.62 2.40
155 156 5.005094 CGGTTTTGAACTAACCCCAGATTA 58.995 41.667 0.00 0.00 41.62 1.75
156 157 5.474189 CGGTTTTGAACTAACCCCAGATTAA 59.526 40.000 0.00 0.00 41.62 1.40
157 158 6.569035 CGGTTTTGAACTAACCCCAGATTAAC 60.569 42.308 0.00 0.00 41.62 2.01
158 159 6.492429 GGTTTTGAACTAACCCCAGATTAACT 59.508 38.462 0.00 0.00 39.29 2.24
159 160 7.309012 GGTTTTGAACTAACCCCAGATTAACTC 60.309 40.741 0.00 0.00 39.29 3.01
160 161 5.431179 TGAACTAACCCCAGATTAACTCC 57.569 43.478 0.00 0.00 0.00 3.85
161 162 4.847512 TGAACTAACCCCAGATTAACTCCA 59.152 41.667 0.00 0.00 0.00 3.86
162 163 5.045869 TGAACTAACCCCAGATTAACTCCAG 60.046 44.000 0.00 0.00 0.00 3.86
163 164 4.436079 ACTAACCCCAGATTAACTCCAGT 58.564 43.478 0.00 0.00 0.00 4.00
164 165 3.721087 AACCCCAGATTAACTCCAGTG 57.279 47.619 0.00 0.00 0.00 3.66
165 166 2.915869 ACCCCAGATTAACTCCAGTGA 58.084 47.619 0.00 0.00 0.00 3.41
166 167 2.572104 ACCCCAGATTAACTCCAGTGAC 59.428 50.000 0.00 0.00 0.00 3.67
167 168 2.571653 CCCCAGATTAACTCCAGTGACA 59.428 50.000 0.00 0.00 0.00 3.58
168 169 3.009033 CCCCAGATTAACTCCAGTGACAA 59.991 47.826 0.00 0.00 0.00 3.18
169 170 4.506625 CCCCAGATTAACTCCAGTGACAAA 60.507 45.833 0.00 0.00 0.00 2.83
170 171 4.697352 CCCAGATTAACTCCAGTGACAAAG 59.303 45.833 0.00 0.00 0.00 2.77
171 172 4.697352 CCAGATTAACTCCAGTGACAAAGG 59.303 45.833 0.00 0.00 0.00 3.11
172 173 5.308825 CAGATTAACTCCAGTGACAAAGGT 58.691 41.667 0.00 0.00 0.00 3.50
173 174 5.180117 CAGATTAACTCCAGTGACAAAGGTG 59.820 44.000 0.00 0.00 0.00 4.00
174 175 4.764050 TTAACTCCAGTGACAAAGGTGA 57.236 40.909 0.00 0.00 0.00 4.02
175 176 2.622064 ACTCCAGTGACAAAGGTGAC 57.378 50.000 0.00 0.00 0.00 3.67
176 177 1.202533 ACTCCAGTGACAAAGGTGACG 60.203 52.381 0.00 0.00 36.15 4.35
177 178 0.828022 TCCAGTGACAAAGGTGACGT 59.172 50.000 0.00 0.00 36.15 4.34
178 179 0.937304 CCAGTGACAAAGGTGACGTG 59.063 55.000 0.00 0.00 36.15 4.49
179 180 0.937304 CAGTGACAAAGGTGACGTGG 59.063 55.000 0.00 0.00 36.15 4.94
180 181 0.814010 AGTGACAAAGGTGACGTGGC 60.814 55.000 0.00 0.00 36.15 5.01
181 182 1.092921 GTGACAAAGGTGACGTGGCA 61.093 55.000 0.00 0.00 36.11 4.92
182 183 0.179032 TGACAAAGGTGACGTGGCAT 60.179 50.000 0.00 0.00 33.90 4.40
183 184 0.517316 GACAAAGGTGACGTGGCATC 59.483 55.000 0.00 0.00 0.00 3.91
184 185 0.108585 ACAAAGGTGACGTGGCATCT 59.891 50.000 0.00 0.00 0.00 2.90
185 186 1.238439 CAAAGGTGACGTGGCATCTT 58.762 50.000 0.00 0.00 40.80 2.40
186 187 1.608590 CAAAGGTGACGTGGCATCTTT 59.391 47.619 8.15 8.15 47.00 2.52
187 188 2.811431 CAAAGGTGACGTGGCATCTTTA 59.189 45.455 13.36 0.00 44.93 1.85
188 189 2.386661 AGGTGACGTGGCATCTTTAG 57.613 50.000 0.00 0.00 0.00 1.85
189 190 0.727398 GGTGACGTGGCATCTTTAGC 59.273 55.000 0.00 0.00 0.00 3.09
190 191 1.438651 GTGACGTGGCATCTTTAGCA 58.561 50.000 0.00 0.00 0.00 3.49
191 192 1.804151 GTGACGTGGCATCTTTAGCAA 59.196 47.619 0.00 0.00 0.00 3.91
192 193 2.076100 TGACGTGGCATCTTTAGCAAG 58.924 47.619 0.00 0.00 0.00 4.01
193 194 1.398390 GACGTGGCATCTTTAGCAAGG 59.602 52.381 0.00 0.00 0.00 3.61
194 195 1.003118 ACGTGGCATCTTTAGCAAGGA 59.997 47.619 0.00 0.00 0.00 3.36
195 196 2.083774 CGTGGCATCTTTAGCAAGGAA 58.916 47.619 0.00 0.00 0.00 3.36
196 197 2.684881 CGTGGCATCTTTAGCAAGGAAT 59.315 45.455 0.00 0.00 0.00 3.01
197 198 3.129287 CGTGGCATCTTTAGCAAGGAATT 59.871 43.478 0.00 0.00 0.00 2.17
198 199 4.380867 CGTGGCATCTTTAGCAAGGAATTT 60.381 41.667 0.00 0.00 0.00 1.82
199 200 5.105063 GTGGCATCTTTAGCAAGGAATTTC 58.895 41.667 0.00 0.00 0.00 2.17
200 201 5.018809 TGGCATCTTTAGCAAGGAATTTCT 58.981 37.500 0.00 0.00 0.00 2.52
201 202 5.105635 TGGCATCTTTAGCAAGGAATTTCTG 60.106 40.000 0.00 0.00 0.00 3.02
202 203 5.105595 GGCATCTTTAGCAAGGAATTTCTGT 60.106 40.000 0.00 0.00 0.00 3.41
203 204 6.095440 GGCATCTTTAGCAAGGAATTTCTGTA 59.905 38.462 0.00 0.00 0.00 2.74
204 205 7.192232 GCATCTTTAGCAAGGAATTTCTGTAG 58.808 38.462 0.00 0.00 0.00 2.74
205 206 7.148171 GCATCTTTAGCAAGGAATTTCTGTAGT 60.148 37.037 0.00 0.00 0.00 2.73
206 207 7.907214 TCTTTAGCAAGGAATTTCTGTAGTC 57.093 36.000 0.00 0.00 0.00 2.59
207 208 7.680730 TCTTTAGCAAGGAATTTCTGTAGTCT 58.319 34.615 0.00 0.00 0.00 3.24
208 209 8.812972 TCTTTAGCAAGGAATTTCTGTAGTCTA 58.187 33.333 0.00 0.00 0.00 2.59
209 210 9.436957 CTTTAGCAAGGAATTTCTGTAGTCTAA 57.563 33.333 0.00 0.00 0.00 2.10
210 211 9.959721 TTTAGCAAGGAATTTCTGTAGTCTAAT 57.040 29.630 0.00 0.00 0.00 1.73
211 212 9.959721 TTAGCAAGGAATTTCTGTAGTCTAATT 57.040 29.630 0.00 0.00 0.00 1.40
216 217 9.765795 AAGGAATTTCTGTAGTCTAATTATCCG 57.234 33.333 0.00 0.00 0.00 4.18
217 218 8.368668 AGGAATTTCTGTAGTCTAATTATCCGG 58.631 37.037 0.00 0.00 0.00 5.14
218 219 7.603024 GGAATTTCTGTAGTCTAATTATCCGGG 59.397 40.741 0.00 0.00 0.00 5.73
219 220 5.464030 TTCTGTAGTCTAATTATCCGGGC 57.536 43.478 0.00 0.00 0.00 6.13
220 221 3.504906 TCTGTAGTCTAATTATCCGGGCG 59.495 47.826 0.00 0.00 0.00 6.13
221 222 3.225104 TGTAGTCTAATTATCCGGGCGT 58.775 45.455 0.00 0.00 0.00 5.68
222 223 3.254166 TGTAGTCTAATTATCCGGGCGTC 59.746 47.826 0.00 0.00 0.00 5.19
223 224 2.313317 AGTCTAATTATCCGGGCGTCA 58.687 47.619 0.00 0.00 0.00 4.35
224 225 2.035576 AGTCTAATTATCCGGGCGTCAC 59.964 50.000 0.00 0.00 0.00 3.67
225 226 2.033372 TCTAATTATCCGGGCGTCACA 58.967 47.619 0.00 0.00 0.00 3.58
226 227 2.431419 TCTAATTATCCGGGCGTCACAA 59.569 45.455 0.00 0.00 0.00 3.33
227 228 2.341846 AATTATCCGGGCGTCACAAT 57.658 45.000 0.00 0.00 0.00 2.71
228 229 2.341846 ATTATCCGGGCGTCACAATT 57.658 45.000 0.00 0.00 0.00 2.32
229 230 2.983907 TTATCCGGGCGTCACAATTA 57.016 45.000 0.00 0.00 0.00 1.40
230 231 2.519377 TATCCGGGCGTCACAATTAG 57.481 50.000 0.00 0.00 0.00 1.73
231 232 0.539986 ATCCGGGCGTCACAATTAGT 59.460 50.000 0.00 0.00 0.00 2.24
232 233 0.108520 TCCGGGCGTCACAATTAGTC 60.109 55.000 0.00 0.00 0.00 2.59
233 234 0.108329 CCGGGCGTCACAATTAGTCT 60.108 55.000 0.00 0.00 0.00 3.24
234 235 1.674817 CCGGGCGTCACAATTAGTCTT 60.675 52.381 0.00 0.00 0.00 3.01
235 236 1.393539 CGGGCGTCACAATTAGTCTTG 59.606 52.381 0.00 0.00 0.00 3.02
236 237 2.695359 GGGCGTCACAATTAGTCTTGA 58.305 47.619 0.00 0.00 0.00 3.02
237 238 3.270877 GGGCGTCACAATTAGTCTTGAT 58.729 45.455 0.00 0.00 0.00 2.57
238 239 3.063997 GGGCGTCACAATTAGTCTTGATG 59.936 47.826 0.00 0.00 0.00 3.07
239 240 3.932710 GGCGTCACAATTAGTCTTGATGA 59.067 43.478 0.00 0.00 0.00 2.92
240 241 4.572389 GGCGTCACAATTAGTCTTGATGAT 59.428 41.667 0.00 0.00 0.00 2.45
241 242 5.496387 GCGTCACAATTAGTCTTGATGATG 58.504 41.667 0.00 0.00 32.45 3.07
242 243 5.291858 GCGTCACAATTAGTCTTGATGATGA 59.708 40.000 0.00 0.00 31.77 2.92
243 244 6.183360 GCGTCACAATTAGTCTTGATGATGAA 60.183 38.462 0.00 0.00 31.77 2.57
244 245 7.397194 CGTCACAATTAGTCTTGATGATGAAG 58.603 38.462 0.00 0.00 31.77 3.02
245 246 7.185453 GTCACAATTAGTCTTGATGATGAAGC 58.815 38.462 0.00 0.00 0.00 3.86
246 247 7.065563 GTCACAATTAGTCTTGATGATGAAGCT 59.934 37.037 0.00 0.00 0.00 3.74
247 248 7.609146 TCACAATTAGTCTTGATGATGAAGCTT 59.391 33.333 0.00 0.00 0.00 3.74
248 249 8.242053 CACAATTAGTCTTGATGATGAAGCTTT 58.758 33.333 0.00 0.00 0.00 3.51
249 250 8.800332 ACAATTAGTCTTGATGATGAAGCTTTT 58.200 29.630 0.00 0.00 0.00 2.27
250 251 9.635520 CAATTAGTCTTGATGATGAAGCTTTTT 57.364 29.630 0.00 0.00 0.00 1.94
266 267 1.914634 TTTTTGCACGCGACAAATGT 58.085 40.000 24.69 0.00 36.91 2.71
267 268 1.195347 TTTTGCACGCGACAAATGTG 58.805 45.000 24.69 9.15 36.91 3.21
284 285 7.083858 ACAAATGTGACAAGAATATGAAACCG 58.916 34.615 0.00 0.00 0.00 4.44
291 292 8.184192 GTGACAAGAATATGAAACCGAATGAAT 58.816 33.333 0.00 0.00 0.00 2.57
402 406 3.061752 ACGCCGGTGGTGTTGATA 58.938 55.556 21.14 0.00 44.78 2.15
406 410 0.655733 GCCGGTGGTGTTGATAATCG 59.344 55.000 1.90 0.00 0.00 3.34
482 487 3.128349 GACGTTGCACTTTTGGTAGAGA 58.872 45.455 0.00 0.00 0.00 3.10
494 499 8.286097 CACTTTTGGTAGAGAGATTTCAAACTC 58.714 37.037 0.00 0.00 0.00 3.01
516 524 7.052248 ACTCTGATGATGATGATGCACTTTTA 58.948 34.615 0.00 0.00 0.00 1.52
590 601 1.610363 TGAATGCAAAACCGTGGCTA 58.390 45.000 0.00 0.00 0.00 3.93
690 706 9.607285 GCTCTTTTATTTACATCTTCGTTTTGA 57.393 29.630 0.00 0.00 0.00 2.69
707 724 6.708502 TCGTTTTGAATCATCTGTTGGAGTTA 59.291 34.615 0.00 0.00 0.00 2.24
779 806 7.554835 TCGGTTTAGAGCACCAAAATATACATT 59.445 33.333 0.00 0.00 33.36 2.71
806 834 7.333323 TCTATTGAAGATGCTCTCACATTTCA 58.667 34.615 0.00 0.00 31.40 2.69
812 840 4.639310 AGATGCTCTCACATTTCATTCCAC 59.361 41.667 0.00 0.00 0.00 4.02
813 841 4.025040 TGCTCTCACATTTCATTCCACT 57.975 40.909 0.00 0.00 0.00 4.00
814 842 4.401022 TGCTCTCACATTTCATTCCACTT 58.599 39.130 0.00 0.00 0.00 3.16
815 843 4.216902 TGCTCTCACATTTCATTCCACTTG 59.783 41.667 0.00 0.00 0.00 3.16
816 844 4.380233 GCTCTCACATTTCATTCCACTTGG 60.380 45.833 0.00 0.00 0.00 3.61
817 845 4.728772 TCTCACATTTCATTCCACTTGGT 58.271 39.130 0.00 0.00 36.34 3.67
825 853 6.546428 TTTCATTCCACTTGGTTACCAAAA 57.454 33.333 18.10 9.64 43.44 2.44
839 867 5.507650 GGTTACCAAAATAAACACAGCCGAA 60.508 40.000 0.00 0.00 0.00 4.30
841 869 3.886505 ACCAAAATAAACACAGCCGAAGA 59.113 39.130 0.00 0.00 0.00 2.87
842 870 4.023193 ACCAAAATAAACACAGCCGAAGAG 60.023 41.667 0.00 0.00 0.00 2.85
844 872 5.278266 CCAAAATAAACACAGCCGAAGAGAA 60.278 40.000 0.00 0.00 0.00 2.87
966 1584 0.179108 GAGATTTGGACCCGGTCTCG 60.179 60.000 17.27 0.00 32.47 4.04
996 1635 2.669569 CGCCCCTGTCAACCACTG 60.670 66.667 0.00 0.00 0.00 3.66
1113 2014 3.636929 ATCCGGCGCCATGGACAAA 62.637 57.895 28.98 4.50 37.02 2.83
1275 2176 1.153745 GCCGACGCTCTTCATCACT 60.154 57.895 0.00 0.00 0.00 3.41
1347 2248 2.747446 GCTCCTCTACCTCGAGATCATC 59.253 54.545 15.71 0.00 32.74 2.92
1515 2416 1.676014 CCGCTCGTTCCTTCCATTCTT 60.676 52.381 0.00 0.00 0.00 2.52
1992 2896 3.378911 TCGCAGAGTGACAACAATGTA 57.621 42.857 0.00 0.00 40.74 2.29
2079 2983 3.444717 GATGGATGTGCTGCGTGCG 62.445 63.158 0.00 0.00 46.63 5.34
2334 3238 8.862081 TGGACTTCCTTGGTGACACTAATGTG 62.862 46.154 4.71 3.77 42.67 3.21
2367 3271 2.926200 TGATGTTGTTTTGTTTGTGCGG 59.074 40.909 0.00 0.00 0.00 5.69
2925 3832 2.183679 CTGGGGCTATCCTCATACCTC 58.816 57.143 0.00 0.00 43.22 3.85
2933 3840 0.722676 TCCTCATACCTCCCCCAACT 59.277 55.000 0.00 0.00 0.00 3.16
3231 4138 9.577110 CAACATTTATCTTTGTCTAATGCATGT 57.423 29.630 0.00 0.00 31.15 3.21
3270 4177 6.362551 CACAAGCTTTCAATCATTCTGTTCTG 59.637 38.462 0.00 0.00 0.00 3.02
3277 4184 9.856488 CTTTCAATCATTCTGTTCTGAAATGAT 57.144 29.630 8.70 8.70 33.62 2.45
3424 4373 2.289882 TGTGGCTTCTCTCATGACCTTG 60.290 50.000 0.00 0.00 0.00 3.61
3464 4413 9.090692 GTTCTAAATAATAGCTGTCGTGGTTTA 57.909 33.333 0.00 0.00 0.00 2.01
3522 4474 2.693074 CCCTGCTTTGTGTAACCAGTTT 59.307 45.455 0.00 0.00 34.36 2.66
3558 4512 2.492088 TCCACTAGAATCTCGTGGTGTG 59.508 50.000 26.56 7.87 44.44 3.82
3680 4634 0.657368 GAGTTTTGTGCCGTTGCTCG 60.657 55.000 0.00 0.00 38.71 5.03
3720 4681 8.153550 TGTTATAACATGAAAGGTTTTGGCATT 58.846 29.630 14.35 0.00 37.74 3.56
3740 4701 7.079475 GGCATTTTTGTTGGATTTGATTTCTG 58.921 34.615 0.00 0.00 0.00 3.02
3825 4790 4.608170 TTCCTATTTGGGCAGAGGAAAT 57.392 40.909 0.00 0.00 43.49 2.17
3845 4810 6.806739 GGAAATGCTGGTAGTTATTTCAACAC 59.193 38.462 0.00 0.00 39.87 3.32
3854 4819 9.521841 TGGTAGTTATTTCAACACCATTATGAA 57.478 29.630 0.00 0.00 31.37 2.57
3919 4884 8.839343 TCGAGAATACGTATGATTAAGTAACCA 58.161 33.333 9.24 0.00 34.70 3.67
3980 5113 9.535878 CTATATCTGTTCCCTCTGTTCTTAAAC 57.464 37.037 0.00 0.00 35.85 2.01
3984 5117 5.123227 TGTTCCCTCTGTTCTTAAACTGTG 58.877 41.667 0.00 0.00 36.17 3.66
4480 5624 3.689649 GTGCAGATGTTACTTTCCGGAAT 59.310 43.478 19.62 6.63 0.00 3.01
4536 5680 8.303876 GGTAATTGGCTTCTTTCTACAATTCAA 58.696 33.333 0.00 0.00 40.81 2.69
4861 9614 5.702670 ACACCATGCATGCTACTCATATTAC 59.297 40.000 21.69 0.00 33.19 1.89
5180 11987 0.179078 AACACCACCGTAAGTTGCGA 60.179 50.000 15.33 0.00 0.00 5.10
5182 11989 1.153353 CACCACCGTAAGTTGCGATT 58.847 50.000 15.33 0.00 0.00 3.34
5225 12542 8.643324 GGCTTTCTCTTCCTTATCTGATTACTA 58.357 37.037 0.00 0.00 0.00 1.82
5480 12797 1.227999 GGCAGTTAAGCTGTGACGCA 61.228 55.000 0.00 0.00 46.64 5.24
5496 12815 0.998226 CGCAACCTGTCGCAATTGTG 60.998 55.000 12.92 12.92 0.00 3.33
5497 12816 0.030638 GCAACCTGTCGCAATTGTGT 59.969 50.000 18.08 0.00 0.00 3.72
5550 12869 1.899437 ATCGGTACAGTGGGCTGGTG 61.899 60.000 0.00 0.00 46.62 4.17
5685 13004 3.776731 TGATCTCTCCCAACTCCCTTA 57.223 47.619 0.00 0.00 0.00 2.69
5730 13050 7.040062 TGACAAAAATGGTGGTGTAAGAATAGG 60.040 37.037 0.00 0.00 0.00 2.57
5769 13089 7.658179 TGTTTATTCTTGATATCAGCGGATC 57.342 36.000 1.48 0.00 34.89 3.36
5836 13156 5.064071 GTCTTTCAGCCTTACATGTTCTAGC 59.936 44.000 2.30 2.50 0.00 3.42
5878 13242 4.212150 GCTCGTTACTTTTCTTTCAGTGC 58.788 43.478 0.00 0.00 0.00 4.40
5912 13276 1.333619 GTCCTTTCGCTTGCTGTCAAA 59.666 47.619 0.00 0.00 0.00 2.69
6003 13626 5.882557 AGGAATCCAAATGTCATGACACTAC 59.117 40.000 30.09 14.57 45.05 2.73
6011 13634 3.398406 TGTCATGACACTACATGCGTTT 58.602 40.909 24.56 0.00 44.79 3.60
6058 13681 4.202264 CCTTAATAGTCCGGTCAATGAGCT 60.202 45.833 10.85 0.00 0.00 4.09
6067 13690 3.381908 CCGGTCAATGAGCTAGTACTCTT 59.618 47.826 10.85 0.00 37.58 2.85
6086 15228 5.142061 TCTTTGTAGGTGTCGCTGATTTA 57.858 39.130 0.00 0.00 0.00 1.40
6087 15229 5.168569 TCTTTGTAGGTGTCGCTGATTTAG 58.831 41.667 0.00 0.00 0.00 1.85
6088 15230 4.530710 TTGTAGGTGTCGCTGATTTAGT 57.469 40.909 0.00 0.00 0.00 2.24
6089 15231 5.648178 TTGTAGGTGTCGCTGATTTAGTA 57.352 39.130 0.00 0.00 0.00 1.82
6090 15232 4.990257 TGTAGGTGTCGCTGATTTAGTAC 58.010 43.478 0.00 0.00 0.00 2.73
6091 15233 4.703575 TGTAGGTGTCGCTGATTTAGTACT 59.296 41.667 0.00 0.00 0.00 2.73
6092 15234 4.803098 AGGTGTCGCTGATTTAGTACTT 57.197 40.909 0.00 0.00 0.00 2.24
6093 15235 4.745649 AGGTGTCGCTGATTTAGTACTTC 58.254 43.478 0.00 0.00 0.00 3.01
6094 15236 3.864003 GGTGTCGCTGATTTAGTACTTCC 59.136 47.826 0.00 0.00 0.00 3.46
6095 15237 4.381718 GGTGTCGCTGATTTAGTACTTCCT 60.382 45.833 0.00 0.00 0.00 3.36
6096 15238 4.799428 GTGTCGCTGATTTAGTACTTCCTC 59.201 45.833 0.00 0.00 0.00 3.71
6097 15239 4.705507 TGTCGCTGATTTAGTACTTCCTCT 59.294 41.667 0.00 0.00 0.00 3.69
6098 15240 5.038033 GTCGCTGATTTAGTACTTCCTCTG 58.962 45.833 0.00 1.18 0.00 3.35
6099 15241 4.098044 TCGCTGATTTAGTACTTCCTCTGG 59.902 45.833 0.00 0.00 0.00 3.86
6100 15242 4.123506 GCTGATTTAGTACTTCCTCTGGC 58.876 47.826 0.00 1.80 0.00 4.85
6101 15243 4.698575 CTGATTTAGTACTTCCTCTGGCC 58.301 47.826 0.00 0.00 0.00 5.36
6102 15244 3.454812 TGATTTAGTACTTCCTCTGGCCC 59.545 47.826 0.00 0.00 0.00 5.80
6103 15245 2.942604 TTAGTACTTCCTCTGGCCCT 57.057 50.000 0.00 0.00 0.00 5.19
6104 15246 2.456073 TAGTACTTCCTCTGGCCCTC 57.544 55.000 0.00 0.00 0.00 4.30
6105 15247 0.325765 AGTACTTCCTCTGGCCCTCC 60.326 60.000 0.00 0.00 0.00 4.30
6106 15248 0.325765 GTACTTCCTCTGGCCCTCCT 60.326 60.000 0.00 0.00 0.00 3.69
6107 15249 1.063114 GTACTTCCTCTGGCCCTCCTA 60.063 57.143 0.00 0.00 0.00 2.94
6108 15250 0.417841 ACTTCCTCTGGCCCTCCTAA 59.582 55.000 0.00 0.00 0.00 2.69
6109 15251 1.010170 ACTTCCTCTGGCCCTCCTAAT 59.990 52.381 0.00 0.00 0.00 1.73
6110 15252 2.250273 ACTTCCTCTGGCCCTCCTAATA 59.750 50.000 0.00 0.00 0.00 0.98
6111 15253 2.400467 TCCTCTGGCCCTCCTAATAC 57.600 55.000 0.00 0.00 0.00 1.89
6112 15254 1.578703 TCCTCTGGCCCTCCTAATACA 59.421 52.381 0.00 0.00 0.00 2.29
6113 15255 2.022428 TCCTCTGGCCCTCCTAATACAA 60.022 50.000 0.00 0.00 0.00 2.41
6114 15256 2.370189 CCTCTGGCCCTCCTAATACAAG 59.630 54.545 0.00 0.00 0.00 3.16
6115 15257 3.041946 CTCTGGCCCTCCTAATACAAGT 58.958 50.000 0.00 0.00 0.00 3.16
6116 15258 3.039011 TCTGGCCCTCCTAATACAAGTC 58.961 50.000 0.00 0.00 0.00 3.01
6117 15259 3.041946 CTGGCCCTCCTAATACAAGTCT 58.958 50.000 0.00 0.00 0.00 3.24
6118 15260 3.456277 CTGGCCCTCCTAATACAAGTCTT 59.544 47.826 0.00 0.00 0.00 3.01
6119 15261 3.850173 TGGCCCTCCTAATACAAGTCTTT 59.150 43.478 0.00 0.00 0.00 2.52
6120 15262 4.291249 TGGCCCTCCTAATACAAGTCTTTT 59.709 41.667 0.00 0.00 0.00 2.27
6121 15263 5.222254 TGGCCCTCCTAATACAAGTCTTTTT 60.222 40.000 0.00 0.00 0.00 1.94
6149 15291 3.401033 TCCAATATGGACTGCATACGG 57.599 47.619 0.00 0.00 42.67 4.02
6150 15292 2.969262 TCCAATATGGACTGCATACGGA 59.031 45.455 6.49 6.49 42.67 4.69
6151 15293 3.006859 TCCAATATGGACTGCATACGGAG 59.993 47.826 6.49 0.00 42.67 4.63
6152 15294 2.738846 CAATATGGACTGCATACGGAGC 59.261 50.000 0.00 0.00 32.91 4.70
6153 15295 1.408969 TATGGACTGCATACGGAGCA 58.591 50.000 0.00 0.00 40.19 4.26
6154 15296 0.541392 ATGGACTGCATACGGAGCAA 59.459 50.000 0.00 0.00 42.17 3.91
6155 15297 0.323302 TGGACTGCATACGGAGCAAA 59.677 50.000 0.00 0.00 42.17 3.68
6156 15298 1.271108 TGGACTGCATACGGAGCAAAA 60.271 47.619 0.00 0.00 42.17 2.44
6157 15299 2.017049 GGACTGCATACGGAGCAAAAT 58.983 47.619 0.00 0.00 42.17 1.82
6158 15300 2.223340 GGACTGCATACGGAGCAAAATG 60.223 50.000 0.00 0.00 42.17 2.32
6159 15301 2.677836 GACTGCATACGGAGCAAAATGA 59.322 45.455 0.00 0.00 42.17 2.57
6160 15302 2.679837 ACTGCATACGGAGCAAAATGAG 59.320 45.455 0.00 0.00 42.17 2.90
6161 15303 2.679837 CTGCATACGGAGCAAAATGAGT 59.320 45.455 0.00 0.00 42.17 3.41
6162 15304 2.419673 TGCATACGGAGCAAAATGAGTG 59.580 45.455 0.00 0.00 39.39 3.51
6163 15305 2.677836 GCATACGGAGCAAAATGAGTGA 59.322 45.455 0.00 0.00 0.00 3.41
6164 15306 3.126858 GCATACGGAGCAAAATGAGTGAA 59.873 43.478 0.00 0.00 0.00 3.18
6165 15307 4.201950 GCATACGGAGCAAAATGAGTGAAT 60.202 41.667 0.00 0.00 0.00 2.57
6166 15308 5.505286 CATACGGAGCAAAATGAGTGAATC 58.495 41.667 0.00 0.00 0.00 2.52
6167 15309 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6168 15310 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6169 15311 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6170 15312 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
6171 15313 4.494855 GGAGCAAAATGAGTGAATCTACGC 60.495 45.833 0.00 0.00 0.00 4.42
6172 15314 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
6173 15315 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
6174 15316 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
6175 15317 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
6176 15318 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
6177 15319 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
6178 15320 7.763172 AAATGAGTGAATCTACGCTCTAAAG 57.237 36.000 0.00 0.00 44.58 1.85
6179 15321 5.899120 TGAGTGAATCTACGCTCTAAAGT 57.101 39.130 0.00 0.00 44.58 2.66
6180 15322 6.997239 TGAGTGAATCTACGCTCTAAAGTA 57.003 37.500 0.00 0.00 44.58 2.24
6181 15323 7.569639 TGAGTGAATCTACGCTCTAAAGTAT 57.430 36.000 0.00 0.00 44.58 2.12
6182 15324 7.418408 TGAGTGAATCTACGCTCTAAAGTATG 58.582 38.462 0.00 0.00 44.58 2.39
6183 15325 7.067129 TGAGTGAATCTACGCTCTAAAGTATGT 59.933 37.037 0.00 0.00 44.58 2.29
6184 15326 7.419204 AGTGAATCTACGCTCTAAAGTATGTC 58.581 38.462 0.00 0.00 0.00 3.06
6185 15327 7.283580 AGTGAATCTACGCTCTAAAGTATGTCT 59.716 37.037 0.00 0.00 0.00 3.41
6186 15328 8.557864 GTGAATCTACGCTCTAAAGTATGTCTA 58.442 37.037 0.00 0.00 0.00 2.59
6187 15329 9.286170 TGAATCTACGCTCTAAAGTATGTCTAT 57.714 33.333 0.00 0.00 0.00 1.98
6195 15337 9.938670 CGCTCTAAAGTATGTCTATATACATCC 57.061 37.037 7.00 0.00 40.52 3.51
6196 15338 9.938670 GCTCTAAAGTATGTCTATATACATCCG 57.061 37.037 7.00 0.00 40.52 4.18
6219 15361 9.304335 TCCGTATGTAGTCTATATTGAAATCCA 57.696 33.333 0.00 0.00 0.00 3.41
6220 15362 9.923143 CCGTATGTAGTCTATATTGAAATCCAA 57.077 33.333 0.00 0.00 39.41 3.53
6246 15388 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
6300 15490 6.931840 GGAGAGAGTACATATTTTGATGACCC 59.068 42.308 0.00 0.00 0.00 4.46
6304 15494 9.178758 GAGAGTACATATTTTGATGACCCTTTT 57.821 33.333 0.00 0.00 0.00 2.27
6322 15512 1.323271 TTTTTGGCCTTGTGTGCGGA 61.323 50.000 3.32 0.00 0.00 5.54
6324 15514 2.902423 TTTGGCCTTGTGTGCGGAGT 62.902 55.000 3.32 0.00 0.00 3.85
6402 15593 4.194720 CGAGCGAGGTCTTCCCGG 62.195 72.222 0.00 0.00 38.74 5.73
6547 15740 1.134788 GTGTCTACCATCTTCGTGGGG 60.135 57.143 0.00 0.00 43.77 4.96
6574 15767 3.176661 TGGCATGCGTTGACATCG 58.823 55.556 12.44 1.47 38.92 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.772973 GAAGAAACCCCACTTTTATAAAATGTT 57.227 29.630 10.97 7.36 0.00 2.71
6 7 8.929487 TGAAGAAACCCCACTTTTATAAAATGT 58.071 29.630 10.97 8.66 0.00 2.71
9 10 7.344871 TGGTGAAGAAACCCCACTTTTATAAAA 59.655 33.333 10.16 10.16 39.70 1.52
10 11 6.839657 TGGTGAAGAAACCCCACTTTTATAAA 59.160 34.615 0.00 0.00 39.70 1.40
11 12 6.265876 GTGGTGAAGAAACCCCACTTTTATAA 59.734 38.462 0.00 0.00 43.21 0.98
12 13 5.771165 GTGGTGAAGAAACCCCACTTTTATA 59.229 40.000 0.00 0.00 43.21 0.98
13 14 4.587262 GTGGTGAAGAAACCCCACTTTTAT 59.413 41.667 0.00 0.00 43.21 1.40
14 15 3.955551 GTGGTGAAGAAACCCCACTTTTA 59.044 43.478 0.00 0.00 43.21 1.52
15 16 2.764010 GTGGTGAAGAAACCCCACTTTT 59.236 45.455 0.00 0.00 43.21 2.27
16 17 2.291930 TGTGGTGAAGAAACCCCACTTT 60.292 45.455 8.91 0.00 46.02 2.66
17 18 1.286553 TGTGGTGAAGAAACCCCACTT 59.713 47.619 8.91 0.00 46.02 3.16
18 19 0.923358 TGTGGTGAAGAAACCCCACT 59.077 50.000 8.91 0.00 46.02 4.00
19 20 1.770294 TTGTGGTGAAGAAACCCCAC 58.230 50.000 0.00 0.00 46.04 4.61
20 21 2.765689 ATTGTGGTGAAGAAACCCCA 57.234 45.000 0.00 0.00 39.70 4.96
21 22 3.257375 GGTAATTGTGGTGAAGAAACCCC 59.743 47.826 0.00 0.00 39.70 4.95
22 23 3.257375 GGGTAATTGTGGTGAAGAAACCC 59.743 47.826 0.00 0.00 39.70 4.11
23 24 3.257375 GGGGTAATTGTGGTGAAGAAACC 59.743 47.826 0.00 0.00 40.94 3.27
24 25 4.022329 CAGGGGTAATTGTGGTGAAGAAAC 60.022 45.833 0.00 0.00 0.00 2.78
25 26 4.148838 CAGGGGTAATTGTGGTGAAGAAA 58.851 43.478 0.00 0.00 0.00 2.52
26 27 3.761897 CAGGGGTAATTGTGGTGAAGAA 58.238 45.455 0.00 0.00 0.00 2.52
27 28 2.554344 GCAGGGGTAATTGTGGTGAAGA 60.554 50.000 0.00 0.00 0.00 2.87
28 29 1.818674 GCAGGGGTAATTGTGGTGAAG 59.181 52.381 0.00 0.00 0.00 3.02
29 30 1.145945 TGCAGGGGTAATTGTGGTGAA 59.854 47.619 0.00 0.00 0.00 3.18
30 31 0.774276 TGCAGGGGTAATTGTGGTGA 59.226 50.000 0.00 0.00 0.00 4.02
31 32 1.851304 ATGCAGGGGTAATTGTGGTG 58.149 50.000 0.00 0.00 0.00 4.17
32 33 3.971468 ATATGCAGGGGTAATTGTGGT 57.029 42.857 0.00 0.00 0.00 4.16
33 34 5.358922 CAAAATATGCAGGGGTAATTGTGG 58.641 41.667 0.00 0.00 0.00 4.17
34 35 5.358922 CCAAAATATGCAGGGGTAATTGTG 58.641 41.667 0.00 0.00 0.00 3.33
35 36 4.141733 GCCAAAATATGCAGGGGTAATTGT 60.142 41.667 0.00 0.00 0.00 2.71
36 37 4.141756 TGCCAAAATATGCAGGGGTAATTG 60.142 41.667 0.00 0.00 32.77 2.32
37 38 4.036518 TGCCAAAATATGCAGGGGTAATT 58.963 39.130 0.00 0.00 32.77 1.40
38 39 3.387699 GTGCCAAAATATGCAGGGGTAAT 59.612 43.478 0.00 0.00 38.34 1.89
39 40 2.763448 GTGCCAAAATATGCAGGGGTAA 59.237 45.455 0.00 0.00 38.34 2.85
40 41 2.291865 TGTGCCAAAATATGCAGGGGTA 60.292 45.455 0.00 0.00 38.34 3.69
41 42 1.194218 GTGCCAAAATATGCAGGGGT 58.806 50.000 0.00 0.00 38.34 4.95
42 43 1.193323 TGTGCCAAAATATGCAGGGG 58.807 50.000 0.00 0.00 38.34 4.79
43 44 2.234414 AGTTGTGCCAAAATATGCAGGG 59.766 45.455 0.00 0.00 38.34 4.45
44 45 3.514645 GAGTTGTGCCAAAATATGCAGG 58.485 45.455 0.00 0.00 38.34 4.85
45 46 3.119884 TCGAGTTGTGCCAAAATATGCAG 60.120 43.478 0.00 0.00 38.34 4.41
46 47 2.816672 TCGAGTTGTGCCAAAATATGCA 59.183 40.909 0.00 0.00 34.54 3.96
47 48 3.485947 TCGAGTTGTGCCAAAATATGC 57.514 42.857 0.00 0.00 0.00 3.14
48 49 4.793071 TGTTCGAGTTGTGCCAAAATATG 58.207 39.130 0.00 0.00 0.00 1.78
49 50 5.643379 ATGTTCGAGTTGTGCCAAAATAT 57.357 34.783 0.00 0.00 0.00 1.28
50 51 5.446143 AATGTTCGAGTTGTGCCAAAATA 57.554 34.783 0.00 0.00 0.00 1.40
51 52 4.320608 AATGTTCGAGTTGTGCCAAAAT 57.679 36.364 0.00 0.00 0.00 1.82
52 53 3.791973 AATGTTCGAGTTGTGCCAAAA 57.208 38.095 0.00 0.00 0.00 2.44
53 54 3.791973 AAATGTTCGAGTTGTGCCAAA 57.208 38.095 0.00 0.00 0.00 3.28
54 55 3.791973 AAAATGTTCGAGTTGTGCCAA 57.208 38.095 0.00 0.00 0.00 4.52
55 56 3.880490 ACTAAAATGTTCGAGTTGTGCCA 59.120 39.130 0.00 0.00 0.00 4.92
56 57 4.483476 ACTAAAATGTTCGAGTTGTGCC 57.517 40.909 0.00 0.00 0.00 5.01
57 58 6.806120 AAAACTAAAATGTTCGAGTTGTGC 57.194 33.333 0.00 0.00 32.57 4.57
84 85 7.302350 AGGCAAACAACAATAGTTTTCAAAC 57.698 32.000 0.00 0.00 37.10 2.93
85 86 7.913674 AAGGCAAACAACAATAGTTTTCAAA 57.086 28.000 0.00 0.00 37.10 2.69
86 87 7.913674 AAAGGCAAACAACAATAGTTTTCAA 57.086 28.000 0.00 0.00 37.10 2.69
87 88 9.606631 ATTAAAGGCAAACAACAATAGTTTTCA 57.393 25.926 0.00 0.00 37.10 2.69
116 117 9.715123 GTTCAAAACCGATTCAAATTCAAAATT 57.285 25.926 0.00 0.00 0.00 1.82
117 118 9.108284 AGTTCAAAACCGATTCAAATTCAAAAT 57.892 25.926 0.00 0.00 0.00 1.82
118 119 8.485976 AGTTCAAAACCGATTCAAATTCAAAA 57.514 26.923 0.00 0.00 0.00 2.44
119 120 9.587772 TTAGTTCAAAACCGATTCAAATTCAAA 57.412 25.926 0.00 0.00 0.00 2.69
120 121 9.026074 GTTAGTTCAAAACCGATTCAAATTCAA 57.974 29.630 0.00 0.00 0.00 2.69
121 122 7.650104 GGTTAGTTCAAAACCGATTCAAATTCA 59.350 33.333 0.00 0.00 37.26 2.57
122 123 7.115805 GGGTTAGTTCAAAACCGATTCAAATTC 59.884 37.037 0.00 0.00 46.14 2.17
123 124 6.926826 GGGTTAGTTCAAAACCGATTCAAATT 59.073 34.615 0.00 0.00 46.14 1.82
124 125 6.452242 GGGTTAGTTCAAAACCGATTCAAAT 58.548 36.000 0.00 0.00 46.14 2.32
125 126 5.221283 GGGGTTAGTTCAAAACCGATTCAAA 60.221 40.000 0.00 0.00 46.14 2.69
126 127 4.278919 GGGGTTAGTTCAAAACCGATTCAA 59.721 41.667 0.00 0.00 46.14 2.69
127 128 3.822167 GGGGTTAGTTCAAAACCGATTCA 59.178 43.478 0.00 0.00 46.14 2.57
128 129 3.822167 TGGGGTTAGTTCAAAACCGATTC 59.178 43.478 0.00 0.00 46.14 2.52
129 130 3.824443 CTGGGGTTAGTTCAAAACCGATT 59.176 43.478 0.00 0.00 46.14 3.34
130 131 3.073356 TCTGGGGTTAGTTCAAAACCGAT 59.927 43.478 0.00 0.00 46.14 4.18
131 132 2.438763 TCTGGGGTTAGTTCAAAACCGA 59.561 45.455 0.00 0.00 46.14 4.69
132 133 2.853705 TCTGGGGTTAGTTCAAAACCG 58.146 47.619 0.00 0.00 46.14 4.44
133 134 6.492429 AGTTAATCTGGGGTTAGTTCAAAACC 59.508 38.462 0.00 0.00 44.75 3.27
134 135 7.309012 GGAGTTAATCTGGGGTTAGTTCAAAAC 60.309 40.741 0.00 0.00 0.00 2.43
135 136 6.717997 GGAGTTAATCTGGGGTTAGTTCAAAA 59.282 38.462 0.00 0.00 0.00 2.44
136 137 6.183361 TGGAGTTAATCTGGGGTTAGTTCAAA 60.183 38.462 0.00 0.00 0.00 2.69
137 138 5.311121 TGGAGTTAATCTGGGGTTAGTTCAA 59.689 40.000 0.00 0.00 0.00 2.69
138 139 4.847512 TGGAGTTAATCTGGGGTTAGTTCA 59.152 41.667 0.00 0.00 0.00 3.18
139 140 5.045797 ACTGGAGTTAATCTGGGGTTAGTTC 60.046 44.000 0.00 0.00 0.00 3.01
140 141 4.850386 ACTGGAGTTAATCTGGGGTTAGTT 59.150 41.667 0.00 0.00 0.00 2.24
141 142 4.225267 CACTGGAGTTAATCTGGGGTTAGT 59.775 45.833 0.00 0.00 0.00 2.24
142 143 4.469945 TCACTGGAGTTAATCTGGGGTTAG 59.530 45.833 0.00 0.00 0.00 2.34
143 144 4.224370 GTCACTGGAGTTAATCTGGGGTTA 59.776 45.833 0.00 0.00 0.00 2.85
144 145 3.009143 GTCACTGGAGTTAATCTGGGGTT 59.991 47.826 0.00 0.00 0.00 4.11
145 146 2.572104 GTCACTGGAGTTAATCTGGGGT 59.428 50.000 0.00 0.00 0.00 4.95
146 147 2.571653 TGTCACTGGAGTTAATCTGGGG 59.428 50.000 0.00 0.00 0.00 4.96
147 148 3.981071 TGTCACTGGAGTTAATCTGGG 57.019 47.619 0.00 0.00 0.00 4.45
148 149 4.697352 CCTTTGTCACTGGAGTTAATCTGG 59.303 45.833 0.00 0.00 0.00 3.86
149 150 5.180117 CACCTTTGTCACTGGAGTTAATCTG 59.820 44.000 0.00 0.00 0.00 2.90
150 151 5.071788 TCACCTTTGTCACTGGAGTTAATCT 59.928 40.000 0.00 0.00 0.00 2.40
151 152 5.179555 GTCACCTTTGTCACTGGAGTTAATC 59.820 44.000 0.00 0.00 0.00 1.75
152 153 5.063880 GTCACCTTTGTCACTGGAGTTAAT 58.936 41.667 0.00 0.00 0.00 1.40
153 154 4.448210 GTCACCTTTGTCACTGGAGTTAA 58.552 43.478 0.00 0.00 0.00 2.01
154 155 3.491964 CGTCACCTTTGTCACTGGAGTTA 60.492 47.826 0.00 0.00 0.00 2.24
155 156 2.741878 CGTCACCTTTGTCACTGGAGTT 60.742 50.000 0.00 0.00 0.00 3.01
156 157 1.202533 CGTCACCTTTGTCACTGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
157 158 1.202533 ACGTCACCTTTGTCACTGGAG 60.203 52.381 0.00 0.00 0.00 3.86
158 159 0.828022 ACGTCACCTTTGTCACTGGA 59.172 50.000 0.00 0.00 0.00 3.86
159 160 0.937304 CACGTCACCTTTGTCACTGG 59.063 55.000 0.00 0.00 0.00 4.00
160 161 0.937304 CCACGTCACCTTTGTCACTG 59.063 55.000 0.00 0.00 0.00 3.66
161 162 0.814010 GCCACGTCACCTTTGTCACT 60.814 55.000 0.00 0.00 0.00 3.41
162 163 1.092921 TGCCACGTCACCTTTGTCAC 61.093 55.000 0.00 0.00 0.00 3.67
163 164 0.179032 ATGCCACGTCACCTTTGTCA 60.179 50.000 0.00 0.00 0.00 3.58
164 165 0.517316 GATGCCACGTCACCTTTGTC 59.483 55.000 0.00 0.00 0.00 3.18
165 166 0.108585 AGATGCCACGTCACCTTTGT 59.891 50.000 0.00 0.00 0.00 2.83
166 167 1.238439 AAGATGCCACGTCACCTTTG 58.762 50.000 0.00 0.00 0.00 2.77
167 168 1.981256 AAAGATGCCACGTCACCTTT 58.019 45.000 0.00 0.00 0.00 3.11
168 169 2.699954 CTAAAGATGCCACGTCACCTT 58.300 47.619 0.00 0.00 0.00 3.50
169 170 1.676014 GCTAAAGATGCCACGTCACCT 60.676 52.381 0.00 0.00 0.00 4.00
170 171 0.727398 GCTAAAGATGCCACGTCACC 59.273 55.000 0.00 0.00 0.00 4.02
171 172 1.438651 TGCTAAAGATGCCACGTCAC 58.561 50.000 0.00 0.00 0.00 3.67
172 173 2.076100 CTTGCTAAAGATGCCACGTCA 58.924 47.619 0.00 0.00 35.19 4.35
173 174 1.398390 CCTTGCTAAAGATGCCACGTC 59.602 52.381 0.00 0.00 35.19 4.34
174 175 1.003118 TCCTTGCTAAAGATGCCACGT 59.997 47.619 0.00 0.00 35.19 4.49
175 176 1.737838 TCCTTGCTAAAGATGCCACG 58.262 50.000 0.00 0.00 35.19 4.94
176 177 4.725790 AATTCCTTGCTAAAGATGCCAC 57.274 40.909 0.00 0.00 35.19 5.01
177 178 5.018809 AGAAATTCCTTGCTAAAGATGCCA 58.981 37.500 0.00 0.00 35.19 4.92
178 179 5.105595 ACAGAAATTCCTTGCTAAAGATGCC 60.106 40.000 0.00 0.00 35.19 4.40
179 180 5.958955 ACAGAAATTCCTTGCTAAAGATGC 58.041 37.500 0.00 0.00 35.19 3.91
180 181 8.273780 ACTACAGAAATTCCTTGCTAAAGATG 57.726 34.615 0.00 0.00 35.19 2.90
181 182 8.325046 AGACTACAGAAATTCCTTGCTAAAGAT 58.675 33.333 0.00 0.00 35.19 2.40
182 183 7.680730 AGACTACAGAAATTCCTTGCTAAAGA 58.319 34.615 0.00 0.00 35.19 2.52
183 184 7.913674 AGACTACAGAAATTCCTTGCTAAAG 57.086 36.000 0.00 0.00 0.00 1.85
184 185 9.959721 ATTAGACTACAGAAATTCCTTGCTAAA 57.040 29.630 0.00 0.00 0.00 1.85
185 186 9.959721 AATTAGACTACAGAAATTCCTTGCTAA 57.040 29.630 0.00 0.00 0.00 3.09
190 191 9.765795 CGGATAATTAGACTACAGAAATTCCTT 57.234 33.333 0.00 0.00 0.00 3.36
191 192 8.368668 CCGGATAATTAGACTACAGAAATTCCT 58.631 37.037 0.00 0.00 0.00 3.36
192 193 7.603024 CCCGGATAATTAGACTACAGAAATTCC 59.397 40.741 0.73 0.00 0.00 3.01
193 194 7.117956 GCCCGGATAATTAGACTACAGAAATTC 59.882 40.741 0.73 0.00 0.00 2.17
194 195 6.935208 GCCCGGATAATTAGACTACAGAAATT 59.065 38.462 0.73 0.00 0.00 1.82
195 196 6.465084 GCCCGGATAATTAGACTACAGAAAT 58.535 40.000 0.73 0.00 0.00 2.17
196 197 5.508489 CGCCCGGATAATTAGACTACAGAAA 60.508 44.000 0.73 0.00 0.00 2.52
197 198 4.022589 CGCCCGGATAATTAGACTACAGAA 60.023 45.833 0.73 0.00 0.00 3.02
198 199 3.504906 CGCCCGGATAATTAGACTACAGA 59.495 47.826 0.73 0.00 0.00 3.41
199 200 3.255149 ACGCCCGGATAATTAGACTACAG 59.745 47.826 0.73 0.00 0.00 2.74
200 201 3.225104 ACGCCCGGATAATTAGACTACA 58.775 45.455 0.73 0.00 0.00 2.74
201 202 3.254166 TGACGCCCGGATAATTAGACTAC 59.746 47.826 0.73 0.00 0.00 2.73
202 203 3.254166 GTGACGCCCGGATAATTAGACTA 59.746 47.826 0.73 0.00 0.00 2.59
203 204 2.035576 GTGACGCCCGGATAATTAGACT 59.964 50.000 0.73 0.00 0.00 3.24
204 205 2.223876 TGTGACGCCCGGATAATTAGAC 60.224 50.000 0.73 0.00 0.00 2.59
205 206 2.033372 TGTGACGCCCGGATAATTAGA 58.967 47.619 0.73 0.00 0.00 2.10
206 207 2.519377 TGTGACGCCCGGATAATTAG 57.481 50.000 0.73 0.00 0.00 1.73
207 208 2.983907 TTGTGACGCCCGGATAATTA 57.016 45.000 0.73 0.00 0.00 1.40
208 209 2.341846 ATTGTGACGCCCGGATAATT 57.658 45.000 0.73 0.00 0.00 1.40
209 210 2.341846 AATTGTGACGCCCGGATAAT 57.658 45.000 0.73 0.00 0.00 1.28
210 211 2.168936 ACTAATTGTGACGCCCGGATAA 59.831 45.455 0.73 0.00 0.00 1.75
211 212 1.758280 ACTAATTGTGACGCCCGGATA 59.242 47.619 0.73 0.00 0.00 2.59
212 213 0.539986 ACTAATTGTGACGCCCGGAT 59.460 50.000 0.73 0.00 0.00 4.18
213 214 0.108520 GACTAATTGTGACGCCCGGA 60.109 55.000 0.73 0.00 0.00 5.14
214 215 0.108329 AGACTAATTGTGACGCCCGG 60.108 55.000 0.00 0.00 0.00 5.73
215 216 1.393539 CAAGACTAATTGTGACGCCCG 59.606 52.381 0.00 0.00 0.00 6.13
216 217 2.695359 TCAAGACTAATTGTGACGCCC 58.305 47.619 0.00 0.00 0.00 6.13
217 218 3.932710 TCATCAAGACTAATTGTGACGCC 59.067 43.478 0.00 0.00 0.00 5.68
218 219 5.291858 TCATCATCAAGACTAATTGTGACGC 59.708 40.000 0.00 0.00 0.00 5.19
219 220 6.892310 TCATCATCAAGACTAATTGTGACG 57.108 37.500 0.00 0.00 0.00 4.35
220 221 7.065563 AGCTTCATCATCAAGACTAATTGTGAC 59.934 37.037 0.00 0.00 0.00 3.67
221 222 7.108194 AGCTTCATCATCAAGACTAATTGTGA 58.892 34.615 0.00 0.00 0.00 3.58
222 223 7.317842 AGCTTCATCATCAAGACTAATTGTG 57.682 36.000 0.00 0.00 0.00 3.33
223 224 7.934855 AAGCTTCATCATCAAGACTAATTGT 57.065 32.000 0.00 0.00 0.00 2.71
224 225 9.635520 AAAAAGCTTCATCATCAAGACTAATTG 57.364 29.630 0.00 0.00 0.00 2.32
247 248 1.585668 CACATTTGTCGCGTGCAAAAA 59.414 42.857 25.52 9.30 38.98 1.94
248 249 1.195347 CACATTTGTCGCGTGCAAAA 58.805 45.000 25.52 14.83 38.98 2.44
249 250 0.378610 TCACATTTGTCGCGTGCAAA 59.621 45.000 24.57 24.57 39.69 3.68
250 251 0.316607 GTCACATTTGTCGCGTGCAA 60.317 50.000 5.77 10.40 0.00 4.08
251 252 1.278337 GTCACATTTGTCGCGTGCA 59.722 52.632 5.77 3.73 0.00 4.57
252 253 0.316607 TTGTCACATTTGTCGCGTGC 60.317 50.000 5.77 0.57 0.00 5.34
253 254 1.260297 TCTTGTCACATTTGTCGCGTG 59.740 47.619 5.77 0.00 0.00 5.34
254 255 1.577468 TCTTGTCACATTTGTCGCGT 58.423 45.000 5.77 0.00 0.00 6.01
255 256 2.661504 TTCTTGTCACATTTGTCGCG 57.338 45.000 0.00 0.00 0.00 5.87
256 257 5.868257 TCATATTCTTGTCACATTTGTCGC 58.132 37.500 0.00 0.00 0.00 5.19
257 258 7.271223 GGTTTCATATTCTTGTCACATTTGTCG 59.729 37.037 0.00 0.00 0.00 4.35
258 259 7.271223 CGGTTTCATATTCTTGTCACATTTGTC 59.729 37.037 0.00 0.00 0.00 3.18
259 260 7.040755 TCGGTTTCATATTCTTGTCACATTTGT 60.041 33.333 0.00 0.00 0.00 2.83
260 261 7.304735 TCGGTTTCATATTCTTGTCACATTTG 58.695 34.615 0.00 0.00 0.00 2.32
261 262 7.447374 TCGGTTTCATATTCTTGTCACATTT 57.553 32.000 0.00 0.00 0.00 2.32
262 263 7.447374 TTCGGTTTCATATTCTTGTCACATT 57.553 32.000 0.00 0.00 0.00 2.71
263 264 7.336679 TCATTCGGTTTCATATTCTTGTCACAT 59.663 33.333 0.00 0.00 0.00 3.21
264 265 6.652900 TCATTCGGTTTCATATTCTTGTCACA 59.347 34.615 0.00 0.00 0.00 3.58
265 266 7.072177 TCATTCGGTTTCATATTCTTGTCAC 57.928 36.000 0.00 0.00 0.00 3.67
266 267 7.680442 TTCATTCGGTTTCATATTCTTGTCA 57.320 32.000 0.00 0.00 0.00 3.58
267 268 8.184192 ACATTCATTCGGTTTCATATTCTTGTC 58.816 33.333 0.00 0.00 0.00 3.18
284 285 1.062587 CGACCGGAAGCACATTCATTC 59.937 52.381 9.46 0.00 39.91 2.67
291 292 3.858868 GAGCACGACCGGAAGCACA 62.859 63.158 9.46 0.00 0.00 4.57
329 330 1.406180 TCTTTGTCGACGTTGTGGAGA 59.594 47.619 11.62 3.50 0.00 3.71
482 487 8.841300 CATCATCATCATCAGAGTTTGAAATCT 58.159 33.333 0.00 0.00 39.77 2.40
590 601 2.105006 CTGCTGTTCAGCCACTGTAT 57.895 50.000 19.91 0.00 35.78 2.29
658 670 8.660373 CGAAGATGTAAATAAAAGAGCAACTCT 58.340 33.333 0.00 0.00 43.37 3.24
690 706 5.184892 AGGCTTAACTCCAACAGATGATT 57.815 39.130 0.00 0.00 0.00 2.57
692 708 4.640771 AAGGCTTAACTCCAACAGATGA 57.359 40.909 0.00 0.00 0.00 2.92
707 724 6.868339 CCAATTTACATCTTCGAAAAAGGCTT 59.132 34.615 0.00 0.00 0.00 4.35
753 780 6.408035 TGTATATTTTGGTGCTCTAAACCGA 58.592 36.000 0.00 0.00 40.86 4.69
798 826 5.010516 TGGTAACCAAGTGGAATGAAATGTG 59.989 40.000 3.83 0.00 38.94 3.21
806 834 7.929245 GTGTTTATTTTGGTAACCAAGTGGAAT 59.071 33.333 3.83 0.00 44.84 3.01
812 840 5.694458 GGCTGTGTTTATTTTGGTAACCAAG 59.306 40.000 0.00 0.00 44.84 3.61
813 841 5.602628 GGCTGTGTTTATTTTGGTAACCAA 58.397 37.500 0.00 0.00 42.29 3.67
814 842 4.261656 CGGCTGTGTTTATTTTGGTAACCA 60.262 41.667 0.00 0.00 0.00 3.67
815 843 4.023021 TCGGCTGTGTTTATTTTGGTAACC 60.023 41.667 0.00 0.00 0.00 2.85
816 844 5.110940 TCGGCTGTGTTTATTTTGGTAAC 57.889 39.130 0.00 0.00 0.00 2.50
817 845 5.531659 TCTTCGGCTGTGTTTATTTTGGTAA 59.468 36.000 0.00 0.00 0.00 2.85
825 853 5.817816 CCTTATTCTCTTCGGCTGTGTTTAT 59.182 40.000 0.00 0.00 0.00 1.40
839 867 3.137360 GCTCATTCCCACCCTTATTCTCT 59.863 47.826 0.00 0.00 0.00 3.10
841 869 3.117738 CAGCTCATTCCCACCCTTATTCT 60.118 47.826 0.00 0.00 0.00 2.40
842 870 3.217626 CAGCTCATTCCCACCCTTATTC 58.782 50.000 0.00 0.00 0.00 1.75
844 872 1.496429 CCAGCTCATTCCCACCCTTAT 59.504 52.381 0.00 0.00 0.00 1.73
914 1161 1.089481 CATCCGCATGCCTAACACGT 61.089 55.000 13.15 0.00 0.00 4.49
921 1168 0.751643 GTTAACCCATCCGCATGCCT 60.752 55.000 13.15 0.00 0.00 4.75
922 1169 1.034838 TGTTAACCCATCCGCATGCC 61.035 55.000 13.15 0.00 0.00 4.40
927 1174 0.108520 TCGAGTGTTAACCCATCCGC 60.109 55.000 2.48 0.00 0.00 5.54
1515 2416 1.139734 GCGGTGCTCGAGATTCTCA 59.860 57.895 18.75 0.25 42.43 3.27
1992 2896 1.617947 GGTCCAGGAGAATGAGCCGT 61.618 60.000 0.00 0.00 0.00 5.68
2079 2983 1.087501 CTAAGTTCGGGCTGGAAAGC 58.912 55.000 0.00 0.00 0.00 3.51
2334 3238 2.629656 AACATCAACTGCTGCCGCC 61.630 57.895 0.00 0.00 34.43 6.13
2367 3271 5.815233 TGGGATTAGTCTCAATGATCTCC 57.185 43.478 0.00 0.00 30.00 3.71
2817 3724 1.298014 CACCTCCTCCAGCCTCAAC 59.702 63.158 0.00 0.00 0.00 3.18
2925 3832 5.834742 TGAATCATTATCAATCAGTTGGGGG 59.165 40.000 0.00 0.00 35.99 5.40
3201 4108 8.375465 GCATTAGACAAAGATAAATGTTGCAAC 58.625 33.333 22.83 22.83 32.54 4.17
3231 4138 0.955428 CTTGTGGGCTAGCTTGCGAA 60.955 55.000 15.72 1.73 0.00 4.70
3277 4184 9.364989 GCAAGCACCAAGTAATGAATTTATTAA 57.635 29.630 4.38 0.00 0.00 1.40
3505 4457 7.821595 AAACTAAAAACTGGTTACACAAAGC 57.178 32.000 0.00 0.00 36.08 3.51
3680 4634 4.217550 TGTTATAACAAGGCTGCTCAAACC 59.782 41.667 15.92 0.00 35.67 3.27
3720 4681 8.243961 TCTACCAGAAATCAAATCCAACAAAA 57.756 30.769 0.00 0.00 0.00 2.44
3753 4714 9.566432 ACAAACTTCTGAAAGATCTGACTAATT 57.434 29.630 0.00 0.00 46.36 1.40
3806 4767 2.363359 GCATTTCCTCTGCCCAAATAGG 59.637 50.000 0.00 0.00 33.44 2.57
3807 4768 3.067742 CAGCATTTCCTCTGCCCAAATAG 59.932 47.826 0.00 0.00 40.56 1.73
3825 4790 4.720046 TGGTGTTGAAATAACTACCAGCA 58.280 39.130 0.00 0.00 33.60 4.41
3854 4819 6.859017 TCACGTGTATCACTATTACACATGT 58.141 36.000 16.51 0.00 42.90 3.21
3980 5113 4.321974 GCCCTAGGAAACAAAAATCCACAG 60.322 45.833 11.48 0.00 38.23 3.66
3984 5117 4.466015 TCATGCCCTAGGAAACAAAAATCC 59.534 41.667 11.48 0.00 35.88 3.01
4480 5624 3.355378 CCACTCAAATTCTGCCCACATA 58.645 45.455 0.00 0.00 0.00 2.29
4757 9510 5.465056 GCATGGTGAGAGAATTAGAGTTAGC 59.535 44.000 0.00 0.00 0.00 3.09
5065 11869 5.279960 GGCAACCTGGACAAAAAGGAAATAT 60.280 40.000 0.00 0.00 37.01 1.28
5180 11987 7.841222 AGAAAGCCTGGAATAAAGATGGTAAAT 59.159 33.333 0.00 0.00 0.00 1.40
5182 11989 6.731467 AGAAAGCCTGGAATAAAGATGGTAA 58.269 36.000 0.00 0.00 0.00 2.85
5480 12797 1.674359 TGACACAATTGCGACAGGTT 58.326 45.000 5.05 0.00 0.00 3.50
5496 12815 3.873952 GCAAAGTGGATCTCCTACATGAC 59.126 47.826 0.00 0.00 36.82 3.06
5497 12816 3.118261 GGCAAAGTGGATCTCCTACATGA 60.118 47.826 0.00 0.00 36.82 3.07
5586 12905 1.552337 TGCGAGCTTCCTCTTCTCATT 59.448 47.619 0.00 0.00 35.90 2.57
5730 13050 6.560711 AGAATAAACAACACAAACCTCACAC 58.439 36.000 0.00 0.00 0.00 3.82
5769 13089 4.461781 AGGGACCCGTAATACAATATCTCG 59.538 45.833 4.40 0.00 0.00 4.04
5878 13242 4.026804 GCGAAAGGACGATACAACATGTAG 60.027 45.833 0.00 0.00 36.14 2.74
5912 13276 7.271511 GTTCCATCAGAGAGATAACACAGAAT 58.728 38.462 0.00 0.00 34.43 2.40
5983 13606 5.066893 GCATGTAGTGTCATGACATTTGGAT 59.933 40.000 30.10 15.87 45.41 3.41
6003 13626 9.743057 TTATTTCCAGGATTAATAAAACGCATG 57.257 29.630 4.41 0.00 0.00 4.06
6011 13634 8.071229 AGGGCCTTTTATTTCCAGGATTAATAA 58.929 33.333 0.00 3.09 0.00 1.40
6058 13681 4.155462 CAGCGACACCTACAAAGAGTACTA 59.845 45.833 0.00 0.00 0.00 1.82
6067 13690 4.530710 ACTAAATCAGCGACACCTACAA 57.469 40.909 0.00 0.00 0.00 2.41
6086 15228 0.325765 GGAGGGCCAGAGGAAGTACT 60.326 60.000 6.18 0.00 0.00 2.73
6087 15229 0.325765 AGGAGGGCCAGAGGAAGTAC 60.326 60.000 6.18 0.00 36.29 2.73
6088 15230 1.315903 TAGGAGGGCCAGAGGAAGTA 58.684 55.000 6.18 0.00 36.29 2.24
6089 15231 0.417841 TTAGGAGGGCCAGAGGAAGT 59.582 55.000 6.18 0.00 36.29 3.01
6090 15232 1.813102 ATTAGGAGGGCCAGAGGAAG 58.187 55.000 6.18 0.00 36.29 3.46
6091 15233 2.022428 TGTATTAGGAGGGCCAGAGGAA 60.022 50.000 6.18 0.00 36.29 3.36
6092 15234 1.578703 TGTATTAGGAGGGCCAGAGGA 59.421 52.381 6.18 0.00 36.29 3.71
6093 15235 2.103153 TGTATTAGGAGGGCCAGAGG 57.897 55.000 6.18 0.00 36.29 3.69
6094 15236 3.041946 ACTTGTATTAGGAGGGCCAGAG 58.958 50.000 6.18 0.00 36.29 3.35
6095 15237 3.039011 GACTTGTATTAGGAGGGCCAGA 58.961 50.000 6.18 0.00 36.29 3.86
6096 15238 3.041946 AGACTTGTATTAGGAGGGCCAG 58.958 50.000 6.18 0.00 36.29 4.85
6097 15239 3.130734 AGACTTGTATTAGGAGGGCCA 57.869 47.619 6.18 0.00 36.29 5.36
6098 15240 4.505324 AAAGACTTGTATTAGGAGGGCC 57.495 45.455 0.00 0.00 0.00 5.80
6129 15271 2.969262 TCCGTATGCAGTCCATATTGGA 59.031 45.455 0.00 0.00 45.98 3.53
6130 15272 3.329386 CTCCGTATGCAGTCCATATTGG 58.671 50.000 0.00 0.00 38.60 3.16
6131 15273 2.738846 GCTCCGTATGCAGTCCATATTG 59.261 50.000 0.00 0.00 38.60 1.90
6132 15274 2.368548 TGCTCCGTATGCAGTCCATATT 59.631 45.455 0.00 0.00 38.60 1.28
6133 15275 1.970640 TGCTCCGTATGCAGTCCATAT 59.029 47.619 0.00 0.00 38.60 1.78
6134 15276 1.408969 TGCTCCGTATGCAGTCCATA 58.591 50.000 0.00 0.00 35.31 2.74
6135 15277 0.541392 TTGCTCCGTATGCAGTCCAT 59.459 50.000 0.00 0.00 41.71 3.41
6136 15278 0.323302 TTTGCTCCGTATGCAGTCCA 59.677 50.000 0.00 0.00 41.71 4.02
6137 15279 1.448985 TTTTGCTCCGTATGCAGTCC 58.551 50.000 0.00 0.00 41.71 3.85
6138 15280 2.677836 TCATTTTGCTCCGTATGCAGTC 59.322 45.455 0.00 0.00 41.71 3.51
6139 15281 2.679837 CTCATTTTGCTCCGTATGCAGT 59.320 45.455 0.00 0.00 41.71 4.40
6140 15282 2.679837 ACTCATTTTGCTCCGTATGCAG 59.320 45.455 0.00 0.00 41.71 4.41
6141 15283 2.419673 CACTCATTTTGCTCCGTATGCA 59.580 45.455 0.00 0.00 38.80 3.96
6142 15284 2.677836 TCACTCATTTTGCTCCGTATGC 59.322 45.455 0.00 0.00 0.00 3.14
6143 15285 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6144 15286 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6145 15287 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6146 15288 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6147 15289 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
6148 15290 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
6149 15291 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
6150 15292 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
6151 15293 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
6152 15294 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
6153 15295 7.819900 ACTTTAGAGCGTAGATTCACTCATTTT 59.180 33.333 0.00 0.00 0.00 1.82
6154 15296 7.324178 ACTTTAGAGCGTAGATTCACTCATTT 58.676 34.615 0.00 0.00 0.00 2.32
6155 15297 6.868622 ACTTTAGAGCGTAGATTCACTCATT 58.131 36.000 0.00 0.00 0.00 2.57
6156 15298 6.458232 ACTTTAGAGCGTAGATTCACTCAT 57.542 37.500 0.00 0.00 0.00 2.90
6157 15299 5.899120 ACTTTAGAGCGTAGATTCACTCA 57.101 39.130 0.00 0.00 0.00 3.41
6158 15300 7.419204 ACATACTTTAGAGCGTAGATTCACTC 58.581 38.462 0.00 0.00 0.00 3.51
6159 15301 7.283580 AGACATACTTTAGAGCGTAGATTCACT 59.716 37.037 0.00 0.00 0.00 3.41
6160 15302 7.419204 AGACATACTTTAGAGCGTAGATTCAC 58.581 38.462 0.00 0.00 0.00 3.18
6161 15303 7.569639 AGACATACTTTAGAGCGTAGATTCA 57.430 36.000 0.00 0.00 0.00 2.57
6169 15311 9.938670 GGATGTATATAGACATACTTTAGAGCG 57.061 37.037 14.35 0.00 40.18 5.03
6170 15312 9.938670 CGGATGTATATAGACATACTTTAGAGC 57.061 37.037 18.29 2.27 40.18 4.09
6193 15335 9.304335 TGGATTTCAATATAGACTACATACGGA 57.696 33.333 0.00 0.00 0.00 4.69
6194 15336 9.923143 TTGGATTTCAATATAGACTACATACGG 57.077 33.333 0.00 0.00 0.00 4.02
6220 15362 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
6221 15363 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
6222 15364 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
6223 15365 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
6224 15366 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
6225 15367 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
6226 15368 9.327731 AGTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
6229 15371 9.684702 TTTAGTACTCCCTCCATTCCTAAATAT 57.315 33.333 0.00 0.00 0.00 1.28
6230 15372 9.684702 ATTTAGTACTCCCTCCATTCCTAAATA 57.315 33.333 0.00 0.00 34.08 1.40
6231 15373 8.582891 ATTTAGTACTCCCTCCATTCCTAAAT 57.417 34.615 0.00 0.00 32.12 1.40
6232 15374 8.401955 AATTTAGTACTCCCTCCATTCCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
6233 15375 9.155785 CTAATTTAGTACTCCCTCCATTCCTAA 57.844 37.037 0.00 0.00 0.00 2.69
6234 15376 8.294690 ACTAATTTAGTACTCCCTCCATTCCTA 58.705 37.037 7.31 0.00 37.23 2.94
6235 15377 7.140304 ACTAATTTAGTACTCCCTCCATTCCT 58.860 38.462 7.31 0.00 37.23 3.36
6236 15378 7.376335 ACTAATTTAGTACTCCCTCCATTCC 57.624 40.000 7.31 0.00 37.23 3.01
6237 15379 8.483758 TGAACTAATTTAGTACTCCCTCCATTC 58.516 37.037 9.43 0.00 38.26 2.67
6238 15380 8.388656 TGAACTAATTTAGTACTCCCTCCATT 57.611 34.615 9.43 0.00 38.26 3.16
6239 15381 7.989947 TGAACTAATTTAGTACTCCCTCCAT 57.010 36.000 9.43 0.00 38.26 3.41
6240 15382 7.801893 TTGAACTAATTTAGTACTCCCTCCA 57.198 36.000 9.43 0.00 38.26 3.86
6241 15383 9.682465 AATTTGAACTAATTTAGTACTCCCTCC 57.318 33.333 9.43 0.00 38.26 4.30
6274 15416 7.419057 GGGTCATCAAAATATGTACTCTCTCCA 60.419 40.741 0.00 0.00 0.00 3.86
6279 15421 9.533831 AAAAAGGGTCATCAAAATATGTACTCT 57.466 29.630 0.00 0.00 0.00 3.24
6304 15494 1.733402 CTCCGCACACAAGGCCAAAA 61.733 55.000 5.01 0.00 0.00 2.44
6322 15512 4.097892 ACAAGGCATCGAGAAAACAAAACT 59.902 37.500 0.00 0.00 0.00 2.66
6324 15514 4.358851 CACAAGGCATCGAGAAAACAAAA 58.641 39.130 0.00 0.00 0.00 2.44
6394 15585 0.616395 TGCTCACCATACCGGGAAGA 60.616 55.000 6.32 0.00 40.22 2.87
6431 15622 1.607801 CGAGAGCATCCTCCACCACA 61.608 60.000 0.00 0.00 38.96 4.17
6547 15740 0.673644 ACGCATGCCACTTACACTCC 60.674 55.000 13.15 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.