Multiple sequence alignment - TraesCS3D01G194700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G194700 chr3D 100.000 6348 0 0 1 6348 186940387 186946734 0.000000e+00 11723.0
1 TraesCS3D01G194700 chr3D 87.266 1123 97 23 2087 3165 301964372 301963252 0.000000e+00 1240.0
2 TraesCS3D01G194700 chr3D 92.846 629 39 1 6 628 499021666 499022294 0.000000e+00 907.0
3 TraesCS3D01G194700 chr3D 87.966 349 29 9 2079 2416 905169 905515 3.570000e-107 399.0
4 TraesCS3D01G194700 chr3D 96.947 131 1 1 6035 6162 186946375 186946505 3.850000e-52 217.0
5 TraesCS3D01G194700 chr3D 96.947 131 1 1 5989 6119 186946421 186946548 3.850000e-52 217.0
6 TraesCS3D01G194700 chr3D 88.125 160 13 6 500 657 19982963 19983118 1.090000e-42 185.0
7 TraesCS3D01G194700 chr3D 95.506 89 1 1 6081 6166 186946375 186946463 8.580000e-29 139.0
8 TraesCS3D01G194700 chr3D 95.506 89 1 1 5989 6077 186946467 186946552 8.580000e-29 139.0
9 TraesCS3D01G194700 chr3D 97.674 43 1 0 6124 6166 186946375 186946417 2.450000e-09 75.0
10 TraesCS3D01G194700 chr3D 97.674 43 1 0 5989 6031 186946510 186946552 2.450000e-09 75.0
11 TraesCS3D01G194700 chr3A 97.812 2377 44 3 3614 5984 239959294 239956920 0.000000e+00 4095.0
12 TraesCS3D01G194700 chr3A 95.274 1439 33 9 664 2071 239960727 239959293 0.000000e+00 2248.0
13 TraesCS3D01G194700 chr3A 90.476 210 20 0 6124 6333 239956892 239956683 1.740000e-70 278.0
14 TraesCS3D01G194700 chr3A 97.015 67 2 0 5965 6031 239956916 239956850 5.200000e-21 113.0
15 TraesCS3D01G194700 chr3A 100.000 43 0 0 6035 6077 239956892 239956850 5.280000e-11 80.5
16 TraesCS3D01G194700 chr3A 100.000 39 0 0 6081 6119 239956892 239956854 8.830000e-09 73.1
17 TraesCS3D01G194700 chr3B 96.226 2464 56 8 3571 6025 268056120 268058555 0.000000e+00 4000.0
18 TraesCS3D01G194700 chr3B 95.080 1443 39 8 664 2083 268054705 268056138 0.000000e+00 2242.0
19 TraesCS3D01G194700 chr3B 91.928 446 35 1 6 450 773354371 773353926 1.940000e-174 623.0
20 TraesCS3D01G194700 chr3B 90.367 218 18 2 6132 6348 268058557 268058772 3.750000e-72 283.0
21 TraesCS3D01G194700 chr5D 87.751 1494 124 15 2096 3541 528581778 528580296 0.000000e+00 1690.0
22 TraesCS3D01G194700 chr5D 87.475 1509 133 18 2081 3542 8938191 8939690 0.000000e+00 1688.0
23 TraesCS3D01G194700 chr5D 86.541 899 78 24 2675 3536 78792662 78793554 0.000000e+00 950.0
24 TraesCS3D01G194700 chr5D 89.669 755 52 9 2096 2824 481737467 481736713 0.000000e+00 939.0
25 TraesCS3D01G194700 chr5D 88.260 707 62 7 2860 3548 481736714 481736011 0.000000e+00 826.0
26 TraesCS3D01G194700 chr5D 87.976 657 75 4 6 659 500855289 500855944 0.000000e+00 773.0
27 TraesCS3D01G194700 chr5D 87.150 428 43 9 2084 2502 2624819 2625243 5.760000e-130 475.0
28 TraesCS3D01G194700 chr1B 86.596 1507 156 24 2086 3547 100553833 100555338 0.000000e+00 1622.0
29 TraesCS3D01G194700 chr1B 85.098 1228 132 21 2087 3268 297528420 297529642 0.000000e+00 1206.0
30 TraesCS3D01G194700 chr1B 82.880 368 56 4 293 659 333488020 333488381 2.210000e-84 324.0
31 TraesCS3D01G194700 chr1D 86.983 1475 128 17 2126 3542 33698404 33696936 0.000000e+00 1602.0
32 TraesCS3D01G194700 chr1D 87.129 1111 85 31 2318 3392 417769427 417770515 0.000000e+00 1206.0
33 TraesCS3D01G194700 chr1D 88.372 688 72 4 2292 2973 461341818 461341133 0.000000e+00 821.0
34 TraesCS3D01G194700 chr1D 93.830 389 24 0 241 629 437830594 437830982 2.550000e-163 586.0
35 TraesCS3D01G194700 chr1D 94.495 109 6 0 6 114 437830150 437830258 1.090000e-37 169.0
36 TraesCS3D01G194700 chr1D 89.333 75 8 0 5861 5935 349442682 349442756 1.880000e-15 95.3
37 TraesCS3D01G194700 chr1D 97.059 34 1 0 5959 5992 389802284 389802317 2.470000e-04 58.4
38 TraesCS3D01G194700 chr6B 86.558 1406 141 19 2173 3546 150154914 150156303 0.000000e+00 1506.0
39 TraesCS3D01G194700 chr6B 85.294 238 35 0 345 582 237385167 237384930 4.920000e-61 246.0
40 TraesCS3D01G194700 chr6B 86.111 72 9 1 5861 5932 71874563 71874633 6.820000e-10 76.8
41 TraesCS3D01G194700 chr6B 80.769 78 14 1 5862 5938 79969986 79970063 6.870000e-05 60.2
42 TraesCS3D01G194700 chr6B 80.769 78 14 1 5862 5938 80023501 80023578 6.870000e-05 60.2
43 TraesCS3D01G194700 chr7D 86.662 1357 121 29 2098 3403 416022986 416024333 0.000000e+00 1448.0
44 TraesCS3D01G194700 chr7D 89.650 657 66 2 6 660 616194715 616195371 0.000000e+00 835.0
45 TraesCS3D01G194700 chr2D 86.250 1360 134 26 2083 3401 328367471 328368818 0.000000e+00 1426.0
46 TraesCS3D01G194700 chr2D 84.808 520 65 10 2085 2592 602087816 602088333 1.580000e-140 510.0
47 TraesCS3D01G194700 chr2D 84.808 520 65 10 2085 2592 602139742 602140259 1.580000e-140 510.0
48 TraesCS3D01G194700 chr2D 79.905 632 114 9 6 631 100429927 100430551 9.700000e-123 451.0
49 TraesCS3D01G194700 chr5A 85.938 1280 125 24 2293 3534 461004759 461003497 0.000000e+00 1315.0
50 TraesCS3D01G194700 chr5A 90.805 435 40 0 3099 3533 428401369 428401803 3.300000e-162 582.0
51 TraesCS3D01G194700 chr6D 85.390 1232 137 16 2333 3534 402964400 402963182 0.000000e+00 1238.0
52 TraesCS3D01G194700 chr6D 86.761 423 45 8 2084 2497 116858276 116858696 1.610000e-125 460.0
53 TraesCS3D01G194700 chr6D 87.500 64 7 1 5875 5938 387629855 387629793 8.830000e-09 73.1
54 TraesCS3D01G194700 chr6D 93.617 47 3 0 6184 6230 34540487 34540533 3.180000e-08 71.3
55 TraesCS3D01G194700 chr2B 88.137 1020 89 13 2082 3070 137001784 137000766 0.000000e+00 1184.0
56 TraesCS3D01G194700 chr2A 83.661 1273 154 21 2230 3489 77340908 77339677 0.000000e+00 1149.0
57 TraesCS3D01G194700 chr2A 90.189 581 55 2 6 584 373873630 373873050 0.000000e+00 756.0
58 TraesCS3D01G194700 chr2A 80.349 631 124 0 6 636 595239766 595240396 4.450000e-131 479.0
59 TraesCS3D01G194700 chr2A 79.483 658 122 7 6 661 585194534 585195180 7.500000e-124 455.0
60 TraesCS3D01G194700 chrUn 88.940 868 67 10 2087 2927 92181118 92180253 0.000000e+00 1044.0
61 TraesCS3D01G194700 chr5B 87.231 791 65 12 2087 2850 534750770 534749989 0.000000e+00 869.0
62 TraesCS3D01G194700 chr5B 86.633 793 69 13 2085 2850 534687764 534686982 0.000000e+00 843.0
63 TraesCS3D01G194700 chr5B 85.897 78 11 0 5861 5938 691229856 691229933 4.080000e-12 84.2
64 TraesCS3D01G194700 chr5B 89.831 59 6 0 5880 5938 431784565 431784507 6.820000e-10 76.8
65 TraesCS3D01G194700 chr4A 88.298 470 44 9 2084 2544 722275517 722275984 2.590000e-153 553.0
66 TraesCS3D01G194700 chr4A 83.158 95 13 3 6137 6230 617022840 617022748 4.080000e-12 84.2
67 TraesCS3D01G194700 chr6A 93.750 48 3 0 5891 5938 593425417 593425464 8.830000e-09 73.1
68 TraesCS3D01G194700 chr4D 93.617 47 2 1 6184 6230 363578201 363578156 1.140000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G194700 chr3D 186940387 186946734 6347 False 1797.857143 11723 97.179143 1 6348 7 chr3D.!!$F4 6347
1 TraesCS3D01G194700 chr3D 301963252 301964372 1120 True 1240.000000 1240 87.266000 2087 3165 1 chr3D.!!$R1 1078
2 TraesCS3D01G194700 chr3D 499021666 499022294 628 False 907.000000 907 92.846000 6 628 1 chr3D.!!$F3 622
3 TraesCS3D01G194700 chr3A 239956683 239960727 4044 True 1147.933333 4095 96.762833 664 6333 6 chr3A.!!$R1 5669
4 TraesCS3D01G194700 chr3B 268054705 268058772 4067 False 2175.000000 4000 93.891000 664 6348 3 chr3B.!!$F1 5684
5 TraesCS3D01G194700 chr5D 528580296 528581778 1482 True 1690.000000 1690 87.751000 2096 3541 1 chr5D.!!$R1 1445
6 TraesCS3D01G194700 chr5D 8938191 8939690 1499 False 1688.000000 1688 87.475000 2081 3542 1 chr5D.!!$F2 1461
7 TraesCS3D01G194700 chr5D 78792662 78793554 892 False 950.000000 950 86.541000 2675 3536 1 chr5D.!!$F3 861
8 TraesCS3D01G194700 chr5D 481736011 481737467 1456 True 882.500000 939 88.964500 2096 3548 2 chr5D.!!$R2 1452
9 TraesCS3D01G194700 chr5D 500855289 500855944 655 False 773.000000 773 87.976000 6 659 1 chr5D.!!$F4 653
10 TraesCS3D01G194700 chr1B 100553833 100555338 1505 False 1622.000000 1622 86.596000 2086 3547 1 chr1B.!!$F1 1461
11 TraesCS3D01G194700 chr1B 297528420 297529642 1222 False 1206.000000 1206 85.098000 2087 3268 1 chr1B.!!$F2 1181
12 TraesCS3D01G194700 chr1D 33696936 33698404 1468 True 1602.000000 1602 86.983000 2126 3542 1 chr1D.!!$R1 1416
13 TraesCS3D01G194700 chr1D 417769427 417770515 1088 False 1206.000000 1206 87.129000 2318 3392 1 chr1D.!!$F3 1074
14 TraesCS3D01G194700 chr1D 461341133 461341818 685 True 821.000000 821 88.372000 2292 2973 1 chr1D.!!$R2 681
15 TraesCS3D01G194700 chr1D 437830150 437830982 832 False 377.500000 586 94.162500 6 629 2 chr1D.!!$F4 623
16 TraesCS3D01G194700 chr6B 150154914 150156303 1389 False 1506.000000 1506 86.558000 2173 3546 1 chr6B.!!$F4 1373
17 TraesCS3D01G194700 chr7D 416022986 416024333 1347 False 1448.000000 1448 86.662000 2098 3403 1 chr7D.!!$F1 1305
18 TraesCS3D01G194700 chr7D 616194715 616195371 656 False 835.000000 835 89.650000 6 660 1 chr7D.!!$F2 654
19 TraesCS3D01G194700 chr2D 328367471 328368818 1347 False 1426.000000 1426 86.250000 2083 3401 1 chr2D.!!$F2 1318
20 TraesCS3D01G194700 chr2D 602087816 602088333 517 False 510.000000 510 84.808000 2085 2592 1 chr2D.!!$F3 507
21 TraesCS3D01G194700 chr2D 602139742 602140259 517 False 510.000000 510 84.808000 2085 2592 1 chr2D.!!$F4 507
22 TraesCS3D01G194700 chr2D 100429927 100430551 624 False 451.000000 451 79.905000 6 631 1 chr2D.!!$F1 625
23 TraesCS3D01G194700 chr5A 461003497 461004759 1262 True 1315.000000 1315 85.938000 2293 3534 1 chr5A.!!$R1 1241
24 TraesCS3D01G194700 chr6D 402963182 402964400 1218 True 1238.000000 1238 85.390000 2333 3534 1 chr6D.!!$R2 1201
25 TraesCS3D01G194700 chr2B 137000766 137001784 1018 True 1184.000000 1184 88.137000 2082 3070 1 chr2B.!!$R1 988
26 TraesCS3D01G194700 chr2A 77339677 77340908 1231 True 1149.000000 1149 83.661000 2230 3489 1 chr2A.!!$R1 1259
27 TraesCS3D01G194700 chr2A 373873050 373873630 580 True 756.000000 756 90.189000 6 584 1 chr2A.!!$R2 578
28 TraesCS3D01G194700 chr2A 595239766 595240396 630 False 479.000000 479 80.349000 6 636 1 chr2A.!!$F2 630
29 TraesCS3D01G194700 chr2A 585194534 585195180 646 False 455.000000 455 79.483000 6 661 1 chr2A.!!$F1 655
30 TraesCS3D01G194700 chrUn 92180253 92181118 865 True 1044.000000 1044 88.940000 2087 2927 1 chrUn.!!$R1 840
31 TraesCS3D01G194700 chr5B 534749989 534750770 781 True 869.000000 869 87.231000 2087 2850 1 chr5B.!!$R3 763
32 TraesCS3D01G194700 chr5B 534686982 534687764 782 True 843.000000 843 86.633000 2085 2850 1 chr5B.!!$R2 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 210 0.311790 CAGTTTCGTTGCAGCCACAT 59.688 50.000 0.00 0.00 0.00 3.21 F
903 1113 0.651031 CTCGCACTCATCGTCGACTA 59.349 55.000 14.70 2.39 0.00 2.59 F
1714 1955 1.008084 ACTCCTCCCCTTGGGTAGTAC 59.992 57.143 4.84 0.00 44.74 2.73 F
3549 3947 0.105709 GGGGAGGAGAGGAGAGGAAG 60.106 65.000 0.00 0.00 0.00 3.46 F
3598 3996 0.603707 CTGCTCAAGTGCTTCCCGAA 60.604 55.000 0.00 0.00 0.00 4.30 F
5146 5550 1.270550 GTATTTGGCACAGCAGCAACT 59.729 47.619 0.00 0.00 42.39 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 2054 1.213013 CGTAAGAGCTGTGGCGACT 59.787 57.895 0.00 0.0 44.37 4.18 R
2546 2835 1.037579 ATCGATGACGGCAGGTCTCA 61.038 55.000 0.00 0.0 46.24 3.27 R
3575 3973 0.250467 GGAAGCACTTGAGCAGTCCA 60.250 55.000 0.00 0.0 39.47 4.02 R
5146 5550 1.655484 CGTGCTGCAAGATGTATCCA 58.345 50.000 10.10 0.0 34.07 3.41 R
5326 5730 4.637483 TCAATCAATGATTTTCTCGCCC 57.363 40.909 5.63 0.0 31.50 6.13 R
6029 6489 0.306228 CCACATGCGTTTCGTTGACA 59.694 50.000 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.459598 CCAACATGGAGAAGGGGAAGATA 59.540 47.826 0.00 0.00 40.96 1.98
98 99 3.965258 TTGTCTGCGCCACCCCAT 61.965 61.111 4.18 0.00 0.00 4.00
201 210 0.311790 CAGTTTCGTTGCAGCCACAT 59.688 50.000 0.00 0.00 0.00 3.21
291 501 2.434688 CGCATATGTGATAGCGCGT 58.565 52.632 10.90 0.00 43.80 6.01
298 508 1.153628 GTGATAGCGCGTTGGAGGT 60.154 57.895 8.43 0.00 0.00 3.85
358 568 3.199880 ACATAAGACCATGCTGCCTAC 57.800 47.619 0.00 0.00 0.00 3.18
473 683 1.870901 CTTAGTACGCCGTCACGCC 60.871 63.158 0.00 0.00 36.19 5.68
542 752 2.125269 GAGTTGGCCGCGTATGGT 60.125 61.111 4.92 0.00 0.00 3.55
640 850 9.174166 GAGGCCTACTTGAGTAATGAAATTTTA 57.826 33.333 4.42 0.00 37.87 1.52
891 1101 4.421479 CGACGCTTCCCTCGCACT 62.421 66.667 0.00 0.00 0.00 4.40
903 1113 0.651031 CTCGCACTCATCGTCGACTA 59.349 55.000 14.70 2.39 0.00 2.59
965 1202 3.540014 CGAGCACGCAAGCGAGAG 61.540 66.667 22.30 11.17 42.83 3.20
991 1228 4.767255 CGTGCACAGGCCTCCTCC 62.767 72.222 18.64 0.00 40.13 4.30
1125 1366 1.070786 AAGGCTCCTCGCGAACAAA 59.929 52.632 11.33 0.00 40.44 2.83
1138 1379 2.296012 GAACAAAGGAGTTCGCGTTC 57.704 50.000 5.77 2.54 38.58 3.95
1270 1511 2.283173 TGGAGCTGCTGGACTCGA 60.283 61.111 7.01 0.00 33.55 4.04
1274 1515 1.137086 GGAGCTGCTGGACTCGATAAA 59.863 52.381 7.01 0.00 33.55 1.40
1605 1846 2.623502 GGCTACCTCCTAACTCAGGTCA 60.624 54.545 0.00 0.00 45.71 4.02
1661 1902 3.996363 TCATACTGAACATGCACACACTC 59.004 43.478 0.00 0.00 0.00 3.51
1707 1948 2.379005 GCAATTTACTCCTCCCCTTGG 58.621 52.381 0.00 0.00 0.00 3.61
1710 1951 3.519370 ATTTACTCCTCCCCTTGGGTA 57.481 47.619 4.84 0.00 44.74 3.69
1711 1952 2.563039 TTACTCCTCCCCTTGGGTAG 57.437 55.000 4.84 0.00 44.74 3.18
1712 1953 1.400941 TACTCCTCCCCTTGGGTAGT 58.599 55.000 4.84 6.30 44.74 2.73
1713 1954 1.400941 ACTCCTCCCCTTGGGTAGTA 58.599 55.000 4.84 0.00 44.74 1.82
1714 1955 1.008084 ACTCCTCCCCTTGGGTAGTAC 59.992 57.143 4.84 0.00 44.74 2.73
1813 2054 1.074072 CGGGGTGATTTGGTGGTCA 59.926 57.895 0.00 0.00 0.00 4.02
2054 2295 5.866335 TGGTAATTTGCACTACTTAACCG 57.134 39.130 0.00 0.00 0.00 4.44
2083 2324 2.024414 GGTGTTTGGACTGCTCAAGTT 58.976 47.619 0.00 0.00 40.07 2.66
2084 2325 2.427095 GGTGTTTGGACTGCTCAAGTTT 59.573 45.455 0.00 0.00 40.07 2.66
2085 2326 3.119137 GGTGTTTGGACTGCTCAAGTTTT 60.119 43.478 0.00 0.00 40.07 2.43
2086 2327 4.494484 GTGTTTGGACTGCTCAAGTTTTT 58.506 39.130 0.00 0.00 40.07 1.94
2342 2605 1.633774 CTAGACTGGGTCACACACCT 58.366 55.000 0.52 0.00 45.95 4.00
2394 2669 1.383799 CAAGGGCCATCACCTCCAA 59.616 57.895 6.18 0.00 37.35 3.53
2594 2885 2.125766 GAAACCCCGCTCCACCTCTT 62.126 60.000 0.00 0.00 0.00 2.85
2614 2905 2.409870 GCCCTTCCAATCAGCACCG 61.410 63.158 0.00 0.00 0.00 4.94
2639 2930 2.426522 CAAAACGATGCCCTCAAGAGA 58.573 47.619 0.00 0.00 0.00 3.10
2768 3082 0.108615 CCCACGACCACTTAGCTCTG 60.109 60.000 0.00 0.00 0.00 3.35
2858 3173 0.688487 CCGTGGAGTGGGAAAAGGTA 59.312 55.000 0.00 0.00 0.00 3.08
3471 3858 4.798682 GGGAGAGGAAGGGGCGGA 62.799 72.222 0.00 0.00 0.00 5.54
3546 3944 1.541672 GAGGGGAGGAGAGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
3547 3945 0.996762 GAGGGGAGGAGAGGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
3548 3946 0.556380 AGGGGAGGAGAGGAGAGGAA 60.556 60.000 0.00 0.00 0.00 3.36
3549 3947 0.105709 GGGGAGGAGAGGAGAGGAAG 60.106 65.000 0.00 0.00 0.00 3.46
3550 3948 0.634465 GGGAGGAGAGGAGAGGAAGT 59.366 60.000 0.00 0.00 0.00 3.01
3551 3949 1.854280 GGGAGGAGAGGAGAGGAAGTA 59.146 57.143 0.00 0.00 0.00 2.24
3552 3950 2.245287 GGGAGGAGAGGAGAGGAAGTAA 59.755 54.545 0.00 0.00 0.00 2.24
3553 3951 3.309994 GGGAGGAGAGGAGAGGAAGTAAA 60.310 52.174 0.00 0.00 0.00 2.01
3554 3952 4.552674 GGAGGAGAGGAGAGGAAGTAAAT 58.447 47.826 0.00 0.00 0.00 1.40
3555 3953 4.587262 GGAGGAGAGGAGAGGAAGTAAATC 59.413 50.000 0.00 0.00 0.00 2.17
3556 3954 5.205056 GAGGAGAGGAGAGGAAGTAAATCA 58.795 45.833 0.00 0.00 0.00 2.57
3557 3955 5.208121 AGGAGAGGAGAGGAAGTAAATCAG 58.792 45.833 0.00 0.00 0.00 2.90
3558 3956 4.959839 GGAGAGGAGAGGAAGTAAATCAGT 59.040 45.833 0.00 0.00 0.00 3.41
3559 3957 6.068735 AGGAGAGGAGAGGAAGTAAATCAGTA 60.069 42.308 0.00 0.00 0.00 2.74
3560 3958 6.040054 GGAGAGGAGAGGAAGTAAATCAGTAC 59.960 46.154 0.00 0.00 0.00 2.73
3561 3959 6.494952 AGAGGAGAGGAAGTAAATCAGTACA 58.505 40.000 0.00 0.00 0.00 2.90
3562 3960 6.954684 AGAGGAGAGGAAGTAAATCAGTACAA 59.045 38.462 0.00 0.00 0.00 2.41
3563 3961 7.621683 AGAGGAGAGGAAGTAAATCAGTACAAT 59.378 37.037 0.00 0.00 0.00 2.71
3564 3962 7.560368 AGGAGAGGAAGTAAATCAGTACAATG 58.440 38.462 0.00 0.00 0.00 2.82
3565 3963 7.400339 AGGAGAGGAAGTAAATCAGTACAATGA 59.600 37.037 0.00 0.00 0.00 2.57
3566 3964 8.041323 GGAGAGGAAGTAAATCAGTACAATGAA 58.959 37.037 0.00 0.00 31.76 2.57
3567 3965 9.436957 GAGAGGAAGTAAATCAGTACAATGAAA 57.563 33.333 0.00 0.00 31.76 2.69
3568 3966 9.965902 AGAGGAAGTAAATCAGTACAATGAAAT 57.034 29.630 0.00 0.00 31.76 2.17
3580 3978 9.349713 TCAGTACAATGAAATAGTTTTTGGACT 57.650 29.630 10.09 10.09 28.52 3.85
3581 3979 9.398170 CAGTACAATGAAATAGTTTTTGGACTG 57.602 33.333 20.76 20.76 36.46 3.51
3582 3980 8.082242 AGTACAATGAAATAGTTTTTGGACTGC 58.918 33.333 13.45 0.00 27.84 4.40
3583 3981 7.054491 ACAATGAAATAGTTTTTGGACTGCT 57.946 32.000 0.00 0.00 0.00 4.24
3584 3982 7.147976 ACAATGAAATAGTTTTTGGACTGCTC 58.852 34.615 0.00 0.00 0.00 4.26
3585 3983 6.899393 ATGAAATAGTTTTTGGACTGCTCA 57.101 33.333 0.00 0.00 0.00 4.26
3586 3984 6.707440 TGAAATAGTTTTTGGACTGCTCAA 57.293 33.333 0.00 0.00 0.00 3.02
3587 3985 6.738114 TGAAATAGTTTTTGGACTGCTCAAG 58.262 36.000 0.00 0.00 0.00 3.02
3588 3986 6.321181 TGAAATAGTTTTTGGACTGCTCAAGT 59.679 34.615 0.00 0.00 43.85 3.16
3598 3996 0.603707 CTGCTCAAGTGCTTCCCGAA 60.604 55.000 0.00 0.00 0.00 4.30
3713 4112 9.834628 TCTTAGGTTCAAATATTGCTTTAAACG 57.165 29.630 0.00 0.00 0.00 3.60
3732 4131 4.124851 ACGTAGAGAATAAGCCAACTGG 57.875 45.455 0.00 0.00 38.53 4.00
3981 4380 3.058016 CGCATTTTCGCCATTCCTGATAT 60.058 43.478 0.00 0.00 0.00 1.63
4025 4424 3.886505 TCTTCTATTCCTTCGGCTCTCTC 59.113 47.826 0.00 0.00 0.00 3.20
4085 4484 3.799366 TCGGTGTTGTGAATTACTGTGT 58.201 40.909 0.00 0.00 0.00 3.72
4096 4495 6.423905 TGTGAATTACTGTGTAACTTCTCTGC 59.576 38.462 0.00 0.00 38.04 4.26
4107 4506 6.194692 GTGTAACTTCTCTGCTTTTGTTTTCG 59.805 38.462 0.00 0.00 0.00 3.46
4205 4604 9.985318 CTGAAGAAAAGAAGCTTATCATTAGTG 57.015 33.333 0.00 0.00 0.00 2.74
4941 5345 6.777213 TTTTCTCAGTCTGGTCTATACTCC 57.223 41.667 0.00 0.00 0.00 3.85
5146 5550 1.270550 GTATTTGGCACAGCAGCAACT 59.729 47.619 0.00 0.00 42.39 3.16
5193 5597 4.120589 CCCTGATCCTAAACTCTTTACGC 58.879 47.826 0.00 0.00 0.00 4.42
5326 5730 9.787532 ACTGTGATATGGAATTTATTTTCAACG 57.212 29.630 0.00 0.00 0.00 4.10
5341 5745 2.432444 TCAACGGGCGAGAAAATCATT 58.568 42.857 0.00 0.00 0.00 2.57
5599 6006 2.890808 ATAGGGATGTGTAGTGTGCG 57.109 50.000 0.00 0.00 0.00 5.34
5616 6023 5.047943 AGTGTGCGAGTGATTATAGGTATCC 60.048 44.000 0.00 0.00 0.00 2.59
5877 6284 2.550830 ACGCTCAGATGTTCAGGTTT 57.449 45.000 0.00 0.00 0.00 3.27
5975 6405 5.943349 TGTTCGTTTAATGGGAGGAGATA 57.057 39.130 0.00 0.00 0.00 1.98
6000 6460 1.494824 GTTGACTACGAAACGCCTGT 58.505 50.000 0.00 0.00 0.00 4.00
6001 6461 1.191647 GTTGACTACGAAACGCCTGTG 59.808 52.381 0.00 0.00 0.00 3.66
6002 6462 0.319211 TGACTACGAAACGCCTGTGG 60.319 55.000 0.00 0.00 0.00 4.17
6003 6463 0.319297 GACTACGAAACGCCTGTGGT 60.319 55.000 0.00 0.00 0.00 4.16
6004 6464 0.599204 ACTACGAAACGCCTGTGGTG 60.599 55.000 0.00 0.00 39.41 4.17
6005 6465 1.289109 CTACGAAACGCCTGTGGTGG 61.289 60.000 0.00 0.00 37.55 4.61
6013 6473 2.425592 CCTGTGGTGGCTTCGTCA 59.574 61.111 0.00 0.00 0.00 4.35
6014 6474 1.227823 CCTGTGGTGGCTTCGTCAA 60.228 57.895 0.00 0.00 0.00 3.18
6015 6475 0.817634 CCTGTGGTGGCTTCGTCAAA 60.818 55.000 0.00 0.00 0.00 2.69
6016 6476 1.238439 CTGTGGTGGCTTCGTCAAAT 58.762 50.000 0.00 0.00 0.00 2.32
6017 6477 1.197721 CTGTGGTGGCTTCGTCAAATC 59.802 52.381 0.00 0.00 0.00 2.17
6018 6478 1.202758 TGTGGTGGCTTCGTCAAATCT 60.203 47.619 0.00 0.00 0.00 2.40
6019 6479 2.037902 TGTGGTGGCTTCGTCAAATCTA 59.962 45.455 0.00 0.00 0.00 1.98
6020 6480 3.071479 GTGGTGGCTTCGTCAAATCTAA 58.929 45.455 0.00 0.00 0.00 2.10
6021 6481 3.500680 GTGGTGGCTTCGTCAAATCTAAA 59.499 43.478 0.00 0.00 0.00 1.85
6022 6482 3.751175 TGGTGGCTTCGTCAAATCTAAAG 59.249 43.478 0.00 0.00 0.00 1.85
6023 6483 4.000988 GGTGGCTTCGTCAAATCTAAAGA 58.999 43.478 0.00 0.00 0.00 2.52
6024 6484 4.636206 GGTGGCTTCGTCAAATCTAAAGAT 59.364 41.667 0.00 0.00 36.07 2.40
6025 6485 5.447818 GGTGGCTTCGTCAAATCTAAAGATG 60.448 44.000 0.00 0.00 34.49 2.90
6026 6486 5.122396 GTGGCTTCGTCAAATCTAAAGATGT 59.878 40.000 0.00 0.00 34.49 3.06
6027 6487 5.705441 TGGCTTCGTCAAATCTAAAGATGTT 59.295 36.000 0.00 0.00 34.49 2.71
6028 6488 6.024049 GGCTTCGTCAAATCTAAAGATGTTG 58.976 40.000 0.00 1.95 34.49 3.33
6029 6489 6.348540 GGCTTCGTCAAATCTAAAGATGTTGT 60.349 38.462 0.00 0.00 34.49 3.32
6030 6490 6.521133 GCTTCGTCAAATCTAAAGATGTTGTG 59.479 38.462 0.00 0.77 34.49 3.33
6031 6491 7.490962 TTCGTCAAATCTAAAGATGTTGTGT 57.509 32.000 0.00 0.00 34.49 3.72
6032 6492 7.117241 TCGTCAAATCTAAAGATGTTGTGTC 57.883 36.000 0.00 0.00 34.49 3.67
6033 6493 6.704050 TCGTCAAATCTAAAGATGTTGTGTCA 59.296 34.615 0.00 0.00 34.49 3.58
6034 6494 7.225734 TCGTCAAATCTAAAGATGTTGTGTCAA 59.774 33.333 0.00 0.00 34.49 3.18
6035 6495 7.321271 CGTCAAATCTAAAGATGTTGTGTCAAC 59.679 37.037 5.78 5.78 34.49 3.18
6036 6496 7.321271 GTCAAATCTAAAGATGTTGTGTCAACG 59.679 37.037 7.87 0.00 34.49 4.10
6037 6497 7.225734 TCAAATCTAAAGATGTTGTGTCAACGA 59.774 33.333 7.87 0.00 34.49 3.85
6038 6498 7.490962 AATCTAAAGATGTTGTGTCAACGAA 57.509 32.000 7.87 0.00 34.49 3.85
6039 6499 6.912203 TCTAAAGATGTTGTGTCAACGAAA 57.088 33.333 7.87 0.00 0.00 3.46
6040 6500 6.711579 TCTAAAGATGTTGTGTCAACGAAAC 58.288 36.000 7.87 0.00 0.00 2.78
6041 6501 3.585748 AGATGTTGTGTCAACGAAACG 57.414 42.857 7.87 0.00 0.00 3.60
6042 6502 2.034076 GATGTTGTGTCAACGAAACGC 58.966 47.619 7.87 0.00 0.00 4.84
6043 6503 0.796927 TGTTGTGTCAACGAAACGCA 59.203 45.000 7.87 0.00 35.47 5.24
6044 6504 1.398739 TGTTGTGTCAACGAAACGCAT 59.601 42.857 7.87 0.00 37.03 4.73
6045 6505 1.772966 GTTGTGTCAACGAAACGCATG 59.227 47.619 0.00 0.00 37.03 4.06
6046 6506 1.010580 TGTGTCAACGAAACGCATGT 58.989 45.000 0.00 0.00 32.50 3.21
6047 6507 1.267782 TGTGTCAACGAAACGCATGTG 60.268 47.619 4.30 4.30 32.50 3.21
6048 6508 0.306228 TGTCAACGAAACGCATGTGG 59.694 50.000 11.65 0.00 0.00 4.17
6049 6509 0.306533 GTCAACGAAACGCATGTGGT 59.693 50.000 11.65 0.00 0.00 4.16
6050 6510 0.306228 TCAACGAAACGCATGTGGTG 59.694 50.000 11.65 0.00 0.00 4.17
6051 6511 0.660005 CAACGAAACGCATGTGGTGG 60.660 55.000 11.65 2.56 0.00 4.61
6052 6512 2.126888 CGAAACGCATGTGGTGGC 60.127 61.111 11.65 0.00 0.00 5.01
6053 6513 2.616330 CGAAACGCATGTGGTGGCT 61.616 57.895 11.65 0.00 0.00 4.75
6054 6514 1.659794 GAAACGCATGTGGTGGCTT 59.340 52.632 11.65 0.00 0.00 4.35
6055 6515 0.387239 GAAACGCATGTGGTGGCTTC 60.387 55.000 11.65 0.00 0.00 3.86
6056 6516 2.128853 AAACGCATGTGGTGGCTTCG 62.129 55.000 11.65 0.00 0.00 3.79
6057 6517 3.049674 CGCATGTGGTGGCTTCGT 61.050 61.111 0.00 0.00 0.00 3.85
6058 6518 2.870372 GCATGTGGTGGCTTCGTC 59.130 61.111 0.00 0.00 0.00 4.20
6059 6519 1.965930 GCATGTGGTGGCTTCGTCA 60.966 57.895 0.00 0.00 0.00 4.35
6060 6520 1.514678 GCATGTGGTGGCTTCGTCAA 61.515 55.000 0.00 0.00 0.00 3.18
6061 6521 0.950836 CATGTGGTGGCTTCGTCAAA 59.049 50.000 0.00 0.00 0.00 2.69
6062 6522 1.541147 CATGTGGTGGCTTCGTCAAAT 59.459 47.619 0.00 0.00 0.00 2.32
6063 6523 1.234821 TGTGGTGGCTTCGTCAAATC 58.765 50.000 0.00 0.00 0.00 2.17
6064 6524 1.202758 TGTGGTGGCTTCGTCAAATCT 60.203 47.619 0.00 0.00 0.00 2.40
6065 6525 2.037902 TGTGGTGGCTTCGTCAAATCTA 59.962 45.455 0.00 0.00 0.00 1.98
6066 6526 3.071479 GTGGTGGCTTCGTCAAATCTAA 58.929 45.455 0.00 0.00 0.00 2.10
6067 6527 3.500680 GTGGTGGCTTCGTCAAATCTAAA 59.499 43.478 0.00 0.00 0.00 1.85
6068 6528 3.751175 TGGTGGCTTCGTCAAATCTAAAG 59.249 43.478 0.00 0.00 0.00 1.85
6069 6529 4.000988 GGTGGCTTCGTCAAATCTAAAGA 58.999 43.478 0.00 0.00 0.00 2.52
6070 6530 4.636206 GGTGGCTTCGTCAAATCTAAAGAT 59.364 41.667 0.00 0.00 36.07 2.40
6071 6531 5.447818 GGTGGCTTCGTCAAATCTAAAGATG 60.448 44.000 0.00 0.00 34.49 2.90
6072 6532 5.122396 GTGGCTTCGTCAAATCTAAAGATGT 59.878 40.000 0.00 0.00 34.49 3.06
6073 6533 5.705441 TGGCTTCGTCAAATCTAAAGATGTT 59.295 36.000 0.00 0.00 34.49 2.71
6074 6534 6.024049 GGCTTCGTCAAATCTAAAGATGTTG 58.976 40.000 0.00 1.95 34.49 3.33
6075 6535 6.348540 GGCTTCGTCAAATCTAAAGATGTTGT 60.349 38.462 0.00 0.00 34.49 3.32
6076 6536 6.521133 GCTTCGTCAAATCTAAAGATGTTGTG 59.479 38.462 0.00 0.77 34.49 3.33
6077 6537 7.490962 TTCGTCAAATCTAAAGATGTTGTGT 57.509 32.000 0.00 0.00 34.49 3.72
6078 6538 7.117241 TCGTCAAATCTAAAGATGTTGTGTC 57.883 36.000 0.00 0.00 34.49 3.67
6079 6539 6.704050 TCGTCAAATCTAAAGATGTTGTGTCA 59.296 34.615 0.00 0.00 34.49 3.58
6080 6540 7.225734 TCGTCAAATCTAAAGATGTTGTGTCAA 59.774 33.333 0.00 0.00 34.49 3.18
6081 6541 7.321271 CGTCAAATCTAAAGATGTTGTGTCAAC 59.679 37.037 5.78 5.78 34.49 3.18
6082 6542 7.321271 GTCAAATCTAAAGATGTTGTGTCAACG 59.679 37.037 7.87 0.00 34.49 4.10
6083 6543 7.225734 TCAAATCTAAAGATGTTGTGTCAACGA 59.774 33.333 7.87 0.00 34.49 3.85
6084 6544 7.490962 AATCTAAAGATGTTGTGTCAACGAA 57.509 32.000 7.87 0.00 34.49 3.85
6085 6545 6.912203 TCTAAAGATGTTGTGTCAACGAAA 57.088 33.333 7.87 0.00 0.00 3.46
6086 6546 6.711579 TCTAAAGATGTTGTGTCAACGAAAC 58.288 36.000 7.87 0.00 0.00 2.78
6087 6547 3.585748 AGATGTTGTGTCAACGAAACG 57.414 42.857 7.87 0.00 0.00 3.60
6088 6548 2.034076 GATGTTGTGTCAACGAAACGC 58.966 47.619 7.87 0.00 0.00 4.84
6089 6549 0.796927 TGTTGTGTCAACGAAACGCA 59.203 45.000 7.87 0.00 35.47 5.24
6090 6550 1.398739 TGTTGTGTCAACGAAACGCAT 59.601 42.857 7.87 0.00 37.03 4.73
6091 6551 1.772966 GTTGTGTCAACGAAACGCATG 59.227 47.619 0.00 0.00 37.03 4.06
6092 6552 1.010580 TGTGTCAACGAAACGCATGT 58.989 45.000 0.00 0.00 32.50 3.21
6093 6553 1.267782 TGTGTCAACGAAACGCATGTG 60.268 47.619 4.30 4.30 32.50 3.21
6094 6554 0.306228 TGTCAACGAAACGCATGTGG 59.694 50.000 11.65 0.00 0.00 4.17
6095 6555 0.306533 GTCAACGAAACGCATGTGGT 59.693 50.000 11.65 0.00 0.00 4.16
6096 6556 0.306228 TCAACGAAACGCATGTGGTG 59.694 50.000 11.65 0.00 0.00 4.17
6097 6557 0.660005 CAACGAAACGCATGTGGTGG 60.660 55.000 11.65 2.56 0.00 4.61
6098 6558 2.126888 CGAAACGCATGTGGTGGC 60.127 61.111 11.65 0.00 0.00 5.01
6099 6559 2.616330 CGAAACGCATGTGGTGGCT 61.616 57.895 11.65 0.00 0.00 4.75
6100 6560 1.659794 GAAACGCATGTGGTGGCTT 59.340 52.632 11.65 0.00 0.00 4.35
6101 6561 0.387239 GAAACGCATGTGGTGGCTTC 60.387 55.000 11.65 0.00 0.00 3.86
6102 6562 2.128853 AAACGCATGTGGTGGCTTCG 62.129 55.000 11.65 0.00 0.00 3.79
6103 6563 3.049674 CGCATGTGGTGGCTTCGT 61.050 61.111 0.00 0.00 0.00 3.85
6104 6564 2.870372 GCATGTGGTGGCTTCGTC 59.130 61.111 0.00 0.00 0.00 4.20
6105 6565 1.965930 GCATGTGGTGGCTTCGTCA 60.966 57.895 0.00 0.00 0.00 4.35
6106 6566 1.514678 GCATGTGGTGGCTTCGTCAA 61.515 55.000 0.00 0.00 0.00 3.18
6107 6567 0.950836 CATGTGGTGGCTTCGTCAAA 59.049 50.000 0.00 0.00 0.00 2.69
6108 6568 1.541147 CATGTGGTGGCTTCGTCAAAT 59.459 47.619 0.00 0.00 0.00 2.32
6109 6569 1.234821 TGTGGTGGCTTCGTCAAATC 58.765 50.000 0.00 0.00 0.00 2.17
6110 6570 1.202758 TGTGGTGGCTTCGTCAAATCT 60.203 47.619 0.00 0.00 0.00 2.40
6111 6571 2.037902 TGTGGTGGCTTCGTCAAATCTA 59.962 45.455 0.00 0.00 0.00 1.98
6112 6572 3.071479 GTGGTGGCTTCGTCAAATCTAA 58.929 45.455 0.00 0.00 0.00 2.10
6113 6573 3.500680 GTGGTGGCTTCGTCAAATCTAAA 59.499 43.478 0.00 0.00 0.00 1.85
6114 6574 3.751175 TGGTGGCTTCGTCAAATCTAAAG 59.249 43.478 0.00 0.00 0.00 1.85
6115 6575 4.000988 GGTGGCTTCGTCAAATCTAAAGA 58.999 43.478 0.00 0.00 0.00 2.52
6116 6576 4.636206 GGTGGCTTCGTCAAATCTAAAGAT 59.364 41.667 0.00 0.00 36.07 2.40
6117 6577 5.447818 GGTGGCTTCGTCAAATCTAAAGATG 60.448 44.000 0.00 0.00 34.49 2.90
6118 6578 5.122396 GTGGCTTCGTCAAATCTAAAGATGT 59.878 40.000 0.00 0.00 34.49 3.06
6119 6579 5.122239 TGGCTTCGTCAAATCTAAAGATGTG 59.878 40.000 4.04 4.04 40.35 3.21
6120 6580 5.122396 GGCTTCGTCAAATCTAAAGATGTGT 59.878 40.000 9.46 0.00 40.02 3.72
6121 6581 6.244275 GCTTCGTCAAATCTAAAGATGTGTC 58.756 40.000 9.46 4.21 40.02 3.67
6122 6582 6.128553 GCTTCGTCAAATCTAAAGATGTGTCA 60.129 38.462 9.46 0.00 40.02 3.58
6123 6583 7.571244 GCTTCGTCAAATCTAAAGATGTGTCAA 60.571 37.037 9.46 2.20 40.02 3.18
6124 6584 7.117241 TCGTCAAATCTAAAGATGTGTCAAC 57.883 36.000 9.46 1.55 40.02 3.18
6125 6585 6.009474 CGTCAAATCTAAAGATGTGTCAACG 58.991 40.000 9.46 8.59 40.02 4.10
6126 6586 6.128929 CGTCAAATCTAAAGATGTGTCAACGA 60.129 38.462 13.57 0.00 38.62 3.85
6127 6587 7.568679 CGTCAAATCTAAAGATGTGTCAACGAA 60.569 37.037 13.57 0.00 38.62 3.85
6128 6588 8.067784 GTCAAATCTAAAGATGTGTCAACGAAA 58.932 33.333 9.46 0.00 40.02 3.46
6129 6589 8.067784 TCAAATCTAAAGATGTGTCAACGAAAC 58.932 33.333 9.46 0.00 40.02 2.78
6130 6590 5.570262 TCTAAAGATGTGTCAACGAAACG 57.430 39.130 0.00 0.00 0.00 3.60
6131 6591 2.663279 AAGATGTGTCAACGAAACGC 57.337 45.000 0.00 0.00 0.00 4.84
6173 6633 2.254546 AAAGATGTTGTGACCGCTCA 57.745 45.000 0.00 0.00 0.00 4.26
6174 6634 2.254546 AAGATGTTGTGACCGCTCAA 57.745 45.000 0.00 0.00 0.00 3.02
6181 6641 3.262420 GTTGTGACCGCTCAATATCACT 58.738 45.455 4.98 0.00 41.65 3.41
6182 6642 4.081917 TGTTGTGACCGCTCAATATCACTA 60.082 41.667 4.98 0.00 41.65 2.74
6215 6675 3.918977 TAGGGTGTGCGTGCGTGT 61.919 61.111 0.00 0.00 0.00 4.49
6274 6734 3.125573 TCCTCGTCCTCTCACGCG 61.126 66.667 3.53 3.53 39.74 6.01
6336 6796 1.547755 TCTCCCCTCTCCTCCTGGT 60.548 63.158 0.00 0.00 34.23 4.00
6340 6800 0.340208 CCCCTCTCCTCCTGGTACTT 59.660 60.000 0.00 0.00 34.23 2.24
6343 6803 2.661718 CCTCTCCTCCTGGTACTTCTC 58.338 57.143 0.00 0.00 34.23 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.765182 GGAATTGATGTACCCATGTAGGAAG 59.235 44.000 0.00 0.00 41.22 3.46
8 9 5.065914 CAGGGAATTGATGTACCCATGTAG 58.934 45.833 0.00 0.00 44.25 2.74
291 501 1.548357 GCTGAGAGCTCCACCTCCAA 61.548 60.000 10.93 0.00 38.45 3.53
358 568 2.802816 GCGCTATCTAACTCCACAATGG 59.197 50.000 0.00 0.00 39.43 3.16
473 683 3.750130 ACTGCACAAATACAAGCTCTCTG 59.250 43.478 0.00 0.00 0.00 3.35
515 725 1.375908 GGCCAACTCATGACTCGCA 60.376 57.895 0.00 0.00 0.00 5.10
542 752 1.679139 CCATACGTGGGGTACTACGA 58.321 55.000 19.26 7.97 42.11 3.43
660 870 2.103340 GTGCCCGTGCGTTGTTTT 59.897 55.556 0.00 0.00 41.78 2.43
661 871 2.944409 TAGGTGCCCGTGCGTTGTTT 62.944 55.000 0.00 0.00 41.78 2.83
662 872 3.463728 TAGGTGCCCGTGCGTTGTT 62.464 57.895 0.00 0.00 41.78 2.83
860 1070 1.138036 CGTCGAAGTGGCCATCGTA 59.862 57.895 24.14 11.39 39.91 3.43
891 1101 0.545171 ACTCCCCTAGTCGACGATGA 59.455 55.000 10.46 3.26 30.33 2.92
903 1113 4.141597 GCTAGCTAGATTTTTGACTCCCCT 60.142 45.833 25.15 0.00 0.00 4.79
985 1222 4.559063 CATGGCGCCTGGGAGGAG 62.559 72.222 29.70 4.34 37.67 3.69
1108 1349 1.374758 CTTTGTTCGCGAGGAGCCT 60.375 57.895 9.59 0.00 44.76 4.58
1605 1846 1.913762 CTCCCCGGTCTGAACCACT 60.914 63.158 0.00 0.00 46.86 4.00
1661 1902 7.758980 CGGATCTTCCATGAATCTTAGATACAG 59.241 40.741 0.00 0.00 35.91 2.74
1707 1948 9.129532 ACAATGGTGTTAGATACTAGTACTACC 57.870 37.037 4.31 9.50 32.58 3.18
1710 1951 8.818622 TGACAATGGTGTTAGATACTAGTACT 57.181 34.615 4.31 0.00 38.41 2.73
1713 1954 7.495934 GCAATGACAATGGTGTTAGATACTAGT 59.504 37.037 0.00 0.00 38.41 2.57
1714 1955 7.495606 TGCAATGACAATGGTGTTAGATACTAG 59.504 37.037 0.00 0.00 38.41 2.57
1813 2054 1.213013 CGTAAGAGCTGTGGCGACT 59.787 57.895 0.00 0.00 44.37 4.18
1969 2210 5.183904 ACTTCACCATGAAATTAGGAACAGC 59.816 40.000 0.00 0.00 35.73 4.40
1971 2212 6.775142 TCAACTTCACCATGAAATTAGGAACA 59.225 34.615 0.00 0.00 35.73 3.18
2054 2295 1.822371 AGTCCAAACACCACACCAAAC 59.178 47.619 0.00 0.00 0.00 2.93
2084 2325 7.443879 GGTGCATCCTCCTTTTGAAAATAAAAA 59.556 33.333 0.00 0.00 0.00 1.94
2085 2326 6.934083 GGTGCATCCTCCTTTTGAAAATAAAA 59.066 34.615 0.00 0.00 0.00 1.52
2086 2327 6.463360 GGTGCATCCTCCTTTTGAAAATAAA 58.537 36.000 0.00 0.00 0.00 1.40
2087 2328 5.046663 GGGTGCATCCTCCTTTTGAAAATAA 60.047 40.000 9.39 0.00 36.25 1.40
2088 2329 4.466015 GGGTGCATCCTCCTTTTGAAAATA 59.534 41.667 9.39 0.00 36.25 1.40
2089 2330 3.261643 GGGTGCATCCTCCTTTTGAAAAT 59.738 43.478 9.39 0.00 36.25 1.82
2090 2331 2.632512 GGGTGCATCCTCCTTTTGAAAA 59.367 45.455 9.39 0.00 36.25 2.29
2091 2332 2.158325 AGGGTGCATCCTCCTTTTGAAA 60.158 45.455 14.53 0.00 36.25 2.69
2094 2335 1.467920 GAGGGTGCATCCTCCTTTTG 58.532 55.000 32.58 0.00 45.75 2.44
2113 2356 2.360949 ATCGTCCAGATGCAGAGGCG 62.361 60.000 0.00 2.77 45.35 5.52
2315 2566 1.714787 TGACCCAGTCTAGGTAGTGGT 59.285 52.381 4.95 0.00 37.88 4.16
2342 2605 3.625897 CTGGGAGTGTGCCGGACA 61.626 66.667 5.05 3.75 36.14 4.02
2384 2659 2.187958 TCGATGGAAGTTGGAGGTGAT 58.812 47.619 0.00 0.00 0.00 3.06
2394 2669 2.632028 CTGAGGATGGATCGATGGAAGT 59.368 50.000 0.54 0.00 0.00 3.01
2546 2835 1.037579 ATCGATGACGGCAGGTCTCA 61.038 55.000 0.00 0.00 46.24 3.27
2614 2905 1.657751 GAGGGCATCGTTTTGGAGCC 61.658 60.000 0.00 0.00 44.48 4.70
2639 2930 3.367087 CGGAAACTATGGTGTCGTTCTCT 60.367 47.826 0.00 0.00 30.64 3.10
2724 3019 2.024590 GCAATTGGCATGCCCCTCTC 62.025 60.000 33.44 15.99 43.97 3.20
2768 3082 2.052157 CTTCTTGAAGGTGTCGTCGAC 58.948 52.381 18.51 18.51 0.00 4.20
3228 3611 3.371097 CTATCGGCGGCTGTGGTGT 62.371 63.158 7.21 0.00 0.00 4.16
3261 3644 4.309950 GGACTTCGGCGGTGTGGT 62.310 66.667 7.21 0.00 0.00 4.16
3443 3830 1.156322 TCCTCTCCCTCCCCTCTGTT 61.156 60.000 0.00 0.00 0.00 3.16
3524 3922 4.179599 CCTCTCCTCCCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
3554 3952 9.349713 AGTCCAAAAACTATTTCATTGTACTGA 57.650 29.630 0.00 0.00 0.00 3.41
3555 3953 9.398170 CAGTCCAAAAACTATTTCATTGTACTG 57.602 33.333 0.00 0.00 0.00 2.74
3556 3954 8.082242 GCAGTCCAAAAACTATTTCATTGTACT 58.918 33.333 0.00 0.00 0.00 2.73
3557 3955 8.082242 AGCAGTCCAAAAACTATTTCATTGTAC 58.918 33.333 0.00 0.00 0.00 2.90
3558 3956 8.177119 AGCAGTCCAAAAACTATTTCATTGTA 57.823 30.769 0.00 0.00 0.00 2.41
3559 3957 7.054491 AGCAGTCCAAAAACTATTTCATTGT 57.946 32.000 0.00 0.00 0.00 2.71
3560 3958 7.147312 TGAGCAGTCCAAAAACTATTTCATTG 58.853 34.615 0.00 0.00 0.00 2.82
3561 3959 7.288810 TGAGCAGTCCAAAAACTATTTCATT 57.711 32.000 0.00 0.00 0.00 2.57
3562 3960 6.899393 TGAGCAGTCCAAAAACTATTTCAT 57.101 33.333 0.00 0.00 0.00 2.57
3563 3961 6.321181 ACTTGAGCAGTCCAAAAACTATTTCA 59.679 34.615 0.00 0.00 0.00 2.69
3564 3962 6.638468 CACTTGAGCAGTCCAAAAACTATTTC 59.362 38.462 0.00 0.00 30.92 2.17
3565 3963 6.507023 CACTTGAGCAGTCCAAAAACTATTT 58.493 36.000 0.00 0.00 30.92 1.40
3566 3964 5.507985 GCACTTGAGCAGTCCAAAAACTATT 60.508 40.000 0.00 0.00 30.92 1.73
3567 3965 4.022849 GCACTTGAGCAGTCCAAAAACTAT 60.023 41.667 0.00 0.00 30.92 2.12
3568 3966 3.315191 GCACTTGAGCAGTCCAAAAACTA 59.685 43.478 0.00 0.00 30.92 2.24
3569 3967 2.099756 GCACTTGAGCAGTCCAAAAACT 59.900 45.455 0.00 0.00 30.92 2.66
3570 3968 2.099756 AGCACTTGAGCAGTCCAAAAAC 59.900 45.455 0.00 0.00 36.85 2.43
3571 3969 2.378038 AGCACTTGAGCAGTCCAAAAA 58.622 42.857 0.00 0.00 36.85 1.94
3572 3970 2.057137 AGCACTTGAGCAGTCCAAAA 57.943 45.000 0.00 0.00 36.85 2.44
3573 3971 1.949525 GAAGCACTTGAGCAGTCCAAA 59.050 47.619 0.00 0.00 36.85 3.28
3574 3972 1.597742 GAAGCACTTGAGCAGTCCAA 58.402 50.000 0.00 0.00 36.85 3.53
3575 3973 0.250467 GGAAGCACTTGAGCAGTCCA 60.250 55.000 0.00 0.00 39.47 4.02
3576 3974 0.957888 GGGAAGCACTTGAGCAGTCC 60.958 60.000 0.00 0.00 39.15 3.85
3577 3975 1.294659 CGGGAAGCACTTGAGCAGTC 61.295 60.000 0.00 0.00 36.85 3.51
3578 3976 1.302033 CGGGAAGCACTTGAGCAGT 60.302 57.895 0.00 0.00 36.85 4.40
3579 3977 0.603707 TTCGGGAAGCACTTGAGCAG 60.604 55.000 0.00 0.00 36.85 4.24
3580 3978 0.603707 CTTCGGGAAGCACTTGAGCA 60.604 55.000 0.00 0.00 36.85 4.26
3581 3979 0.603975 ACTTCGGGAAGCACTTGAGC 60.604 55.000 8.29 0.00 41.99 4.26
3582 3980 1.151668 CACTTCGGGAAGCACTTGAG 58.848 55.000 8.29 0.00 41.99 3.02
3583 3981 0.756294 TCACTTCGGGAAGCACTTGA 59.244 50.000 8.29 2.43 41.99 3.02
3584 3982 1.813513 ATCACTTCGGGAAGCACTTG 58.186 50.000 8.29 0.13 41.99 3.16
3585 3983 3.197766 TGATATCACTTCGGGAAGCACTT 59.802 43.478 0.00 0.00 41.99 3.16
3586 3984 2.766263 TGATATCACTTCGGGAAGCACT 59.234 45.455 0.00 0.00 41.99 4.40
3587 3985 3.179443 TGATATCACTTCGGGAAGCAC 57.821 47.619 0.00 0.00 41.99 4.40
3588 3986 4.129380 CAATGATATCACTTCGGGAAGCA 58.871 43.478 7.78 0.00 41.99 3.91
3687 4086 9.834628 CGTTTAAAGCAATATTTGAACCTAAGA 57.165 29.630 0.00 0.00 36.06 2.10
3713 4112 3.433740 CCCCCAGTTGGCTTATTCTCTAC 60.434 52.174 0.00 0.00 0.00 2.59
3732 4131 6.839134 CCTATTATATAATTTGGCCCTTCCCC 59.161 42.308 13.09 0.00 0.00 4.81
3981 4380 1.145945 TGATGGCCACCCAAACTTGTA 59.854 47.619 8.16 0.00 46.14 2.41
4025 4424 2.432628 GCGAACCAGACAGTCCCG 60.433 66.667 0.00 0.00 0.00 5.14
4085 4484 6.092944 TGACGAAAACAAAAGCAGAGAAGTTA 59.907 34.615 0.00 0.00 0.00 2.24
4096 4495 7.684062 AATTCAGACATGACGAAAACAAAAG 57.316 32.000 0.00 0.00 34.35 2.27
4107 4506 6.064846 ACAGACAACAAATTCAGACATGAC 57.935 37.500 0.00 0.00 34.35 3.06
4205 4604 1.280421 AGGCTCTCCTGATGTGGTTTC 59.720 52.381 0.00 0.00 42.34 2.78
4941 5345 4.861462 CGAGGACCGATATCTTGATGATTG 59.139 45.833 0.34 0.00 41.76 2.67
5146 5550 1.655484 CGTGCTGCAAGATGTATCCA 58.345 50.000 10.10 0.00 34.07 3.41
5326 5730 4.637483 TCAATCAATGATTTTCTCGCCC 57.363 40.909 5.63 0.00 31.50 6.13
5341 5745 5.187772 AGAAGCGGGCTATACATATCAATCA 59.812 40.000 0.00 0.00 0.00 2.57
5450 5857 5.516696 GTCTGTTGTTTGCTTCTTTCTTTCC 59.483 40.000 0.00 0.00 0.00 3.13
5616 6023 5.977129 TGCGTGTATGACAGAATATGTACAG 59.023 40.000 0.33 0.00 44.17 2.74
5877 6284 1.045911 GGGCTGGTTCCACCACAAAA 61.046 55.000 10.75 0.00 44.79 2.44
5963 6393 4.282195 GTCAACGAGAATATCTCCTCCCAT 59.718 45.833 1.98 0.00 40.34 4.00
5997 6457 1.197721 GATTTGACGAAGCCACCACAG 59.802 52.381 0.00 0.00 0.00 3.66
5998 6458 1.202758 AGATTTGACGAAGCCACCACA 60.203 47.619 0.00 0.00 0.00 4.17
5999 6459 1.523758 AGATTTGACGAAGCCACCAC 58.476 50.000 0.00 0.00 0.00 4.16
6000 6460 3.410631 TTAGATTTGACGAAGCCACCA 57.589 42.857 0.00 0.00 0.00 4.17
6001 6461 4.000988 TCTTTAGATTTGACGAAGCCACC 58.999 43.478 0.00 0.00 0.00 4.61
6002 6462 5.122396 ACATCTTTAGATTTGACGAAGCCAC 59.878 40.000 0.00 0.00 31.21 5.01
6003 6463 5.245531 ACATCTTTAGATTTGACGAAGCCA 58.754 37.500 0.00 0.00 31.21 4.75
6004 6464 5.803020 ACATCTTTAGATTTGACGAAGCC 57.197 39.130 0.00 0.00 31.21 4.35
6005 6465 6.521133 CACAACATCTTTAGATTTGACGAAGC 59.479 38.462 15.29 0.00 32.31 3.86
6006 6466 7.576236 ACACAACATCTTTAGATTTGACGAAG 58.424 34.615 15.29 0.00 32.31 3.79
6007 6467 7.225734 TGACACAACATCTTTAGATTTGACGAA 59.774 33.333 15.29 0.00 32.31 3.85
6008 6468 6.704050 TGACACAACATCTTTAGATTTGACGA 59.296 34.615 15.29 0.00 32.31 4.20
6009 6469 6.887368 TGACACAACATCTTTAGATTTGACG 58.113 36.000 15.29 10.78 32.31 4.35
6010 6470 7.321271 CGTTGACACAACATCTTTAGATTTGAC 59.679 37.037 13.62 9.87 32.31 3.18
6011 6471 7.225734 TCGTTGACACAACATCTTTAGATTTGA 59.774 33.333 13.62 0.00 32.31 2.69
6012 6472 7.351981 TCGTTGACACAACATCTTTAGATTTG 58.648 34.615 13.62 10.43 33.21 2.32
6013 6473 7.490962 TCGTTGACACAACATCTTTAGATTT 57.509 32.000 13.62 0.00 31.21 2.17
6014 6474 7.490962 TTCGTTGACACAACATCTTTAGATT 57.509 32.000 13.62 0.00 31.21 2.40
6015 6475 7.352739 GTTTCGTTGACACAACATCTTTAGAT 58.647 34.615 13.62 0.00 34.56 1.98
6016 6476 6.508880 CGTTTCGTTGACACAACATCTTTAGA 60.509 38.462 13.62 0.35 0.00 2.10
6017 6477 5.615581 CGTTTCGTTGACACAACATCTTTAG 59.384 40.000 13.62 0.00 0.00 1.85
6018 6478 5.494618 CGTTTCGTTGACACAACATCTTTA 58.505 37.500 13.62 0.00 0.00 1.85
6019 6479 4.339429 CGTTTCGTTGACACAACATCTTT 58.661 39.130 13.62 0.00 0.00 2.52
6020 6480 3.787476 GCGTTTCGTTGACACAACATCTT 60.787 43.478 13.62 0.00 0.00 2.40
6021 6481 2.286184 GCGTTTCGTTGACACAACATCT 60.286 45.455 13.62 0.00 0.00 2.90
6022 6482 2.034076 GCGTTTCGTTGACACAACATC 58.966 47.619 13.62 2.06 0.00 3.06
6023 6483 1.398739 TGCGTTTCGTTGACACAACAT 59.601 42.857 13.62 0.00 0.00 2.71
6024 6484 0.796927 TGCGTTTCGTTGACACAACA 59.203 45.000 13.62 0.62 0.00 3.33
6025 6485 1.772966 CATGCGTTTCGTTGACACAAC 59.227 47.619 0.00 0.00 0.00 3.32
6026 6486 1.398739 ACATGCGTTTCGTTGACACAA 59.601 42.857 0.00 0.00 0.00 3.33
6027 6487 1.010580 ACATGCGTTTCGTTGACACA 58.989 45.000 0.00 0.00 0.00 3.72
6028 6488 1.385038 CACATGCGTTTCGTTGACAC 58.615 50.000 0.00 0.00 0.00 3.67
6029 6489 0.306228 CCACATGCGTTTCGTTGACA 59.694 50.000 0.00 0.00 0.00 3.58
6030 6490 0.306533 ACCACATGCGTTTCGTTGAC 59.693 50.000 0.00 0.00 0.00 3.18
6031 6491 0.306228 CACCACATGCGTTTCGTTGA 59.694 50.000 0.00 0.00 0.00 3.18
6032 6492 0.660005 CCACCACATGCGTTTCGTTG 60.660 55.000 0.00 0.00 0.00 4.10
6033 6493 1.652012 CCACCACATGCGTTTCGTT 59.348 52.632 0.00 0.00 0.00 3.85
6034 6494 2.903547 GCCACCACATGCGTTTCGT 61.904 57.895 0.00 0.00 0.00 3.85
6035 6495 2.126888 GCCACCACATGCGTTTCG 60.127 61.111 0.00 0.00 0.00 3.46
6036 6496 0.387239 GAAGCCACCACATGCGTTTC 60.387 55.000 0.00 0.00 0.00 2.78
6037 6497 1.659794 GAAGCCACCACATGCGTTT 59.340 52.632 0.00 0.00 0.00 3.60
6038 6498 2.616330 CGAAGCCACCACATGCGTT 61.616 57.895 0.00 0.00 0.00 4.84
6039 6499 3.049674 CGAAGCCACCACATGCGT 61.050 61.111 0.00 0.00 0.00 5.24
6040 6500 3.027170 GACGAAGCCACCACATGCG 62.027 63.158 0.00 0.00 0.00 4.73
6041 6501 1.514678 TTGACGAAGCCACCACATGC 61.515 55.000 0.00 0.00 0.00 4.06
6042 6502 0.950836 TTTGACGAAGCCACCACATG 59.049 50.000 0.00 0.00 0.00 3.21
6043 6503 1.812571 GATTTGACGAAGCCACCACAT 59.187 47.619 0.00 0.00 0.00 3.21
6044 6504 1.202758 AGATTTGACGAAGCCACCACA 60.203 47.619 0.00 0.00 0.00 4.17
6045 6505 1.523758 AGATTTGACGAAGCCACCAC 58.476 50.000 0.00 0.00 0.00 4.16
6046 6506 3.410631 TTAGATTTGACGAAGCCACCA 57.589 42.857 0.00 0.00 0.00 4.17
6047 6507 4.000988 TCTTTAGATTTGACGAAGCCACC 58.999 43.478 0.00 0.00 0.00 4.61
6048 6508 5.122396 ACATCTTTAGATTTGACGAAGCCAC 59.878 40.000 0.00 0.00 31.21 5.01
6049 6509 5.245531 ACATCTTTAGATTTGACGAAGCCA 58.754 37.500 0.00 0.00 31.21 4.75
6050 6510 5.803020 ACATCTTTAGATTTGACGAAGCC 57.197 39.130 0.00 0.00 31.21 4.35
6051 6511 6.521133 CACAACATCTTTAGATTTGACGAAGC 59.479 38.462 15.29 0.00 32.31 3.86
6052 6512 7.576236 ACACAACATCTTTAGATTTGACGAAG 58.424 34.615 15.29 0.00 32.31 3.79
6053 6513 7.225734 TGACACAACATCTTTAGATTTGACGAA 59.774 33.333 15.29 0.00 32.31 3.85
6054 6514 6.704050 TGACACAACATCTTTAGATTTGACGA 59.296 34.615 15.29 0.00 32.31 4.20
6055 6515 6.887368 TGACACAACATCTTTAGATTTGACG 58.113 36.000 15.29 10.78 32.31 4.35
6056 6516 7.321271 CGTTGACACAACATCTTTAGATTTGAC 59.679 37.037 13.62 9.87 32.31 3.18
6057 6517 7.225734 TCGTTGACACAACATCTTTAGATTTGA 59.774 33.333 13.62 0.00 32.31 2.69
6058 6518 7.351981 TCGTTGACACAACATCTTTAGATTTG 58.648 34.615 13.62 10.43 33.21 2.32
6059 6519 7.490962 TCGTTGACACAACATCTTTAGATTT 57.509 32.000 13.62 0.00 31.21 2.17
6060 6520 7.490962 TTCGTTGACACAACATCTTTAGATT 57.509 32.000 13.62 0.00 31.21 2.40
6061 6521 7.352739 GTTTCGTTGACACAACATCTTTAGAT 58.647 34.615 13.62 0.00 34.56 1.98
6062 6522 6.508880 CGTTTCGTTGACACAACATCTTTAGA 60.509 38.462 13.62 0.35 0.00 2.10
6063 6523 5.615581 CGTTTCGTTGACACAACATCTTTAG 59.384 40.000 13.62 0.00 0.00 1.85
6064 6524 5.494618 CGTTTCGTTGACACAACATCTTTA 58.505 37.500 13.62 0.00 0.00 1.85
6065 6525 4.339429 CGTTTCGTTGACACAACATCTTT 58.661 39.130 13.62 0.00 0.00 2.52
6066 6526 3.787476 GCGTTTCGTTGACACAACATCTT 60.787 43.478 13.62 0.00 0.00 2.40
6067 6527 2.286184 GCGTTTCGTTGACACAACATCT 60.286 45.455 13.62 0.00 0.00 2.90
6068 6528 2.034076 GCGTTTCGTTGACACAACATC 58.966 47.619 13.62 2.06 0.00 3.06
6069 6529 1.398739 TGCGTTTCGTTGACACAACAT 59.601 42.857 13.62 0.00 0.00 2.71
6070 6530 0.796927 TGCGTTTCGTTGACACAACA 59.203 45.000 13.62 0.62 0.00 3.33
6071 6531 1.772966 CATGCGTTTCGTTGACACAAC 59.227 47.619 0.00 0.00 0.00 3.32
6072 6532 1.398739 ACATGCGTTTCGTTGACACAA 59.601 42.857 0.00 0.00 0.00 3.33
6073 6533 1.010580 ACATGCGTTTCGTTGACACA 58.989 45.000 0.00 0.00 0.00 3.72
6074 6534 1.385038 CACATGCGTTTCGTTGACAC 58.615 50.000 0.00 0.00 0.00 3.67
6075 6535 0.306228 CCACATGCGTTTCGTTGACA 59.694 50.000 0.00 0.00 0.00 3.58
6076 6536 0.306533 ACCACATGCGTTTCGTTGAC 59.693 50.000 0.00 0.00 0.00 3.18
6077 6537 0.306228 CACCACATGCGTTTCGTTGA 59.694 50.000 0.00 0.00 0.00 3.18
6078 6538 0.660005 CCACCACATGCGTTTCGTTG 60.660 55.000 0.00 0.00 0.00 4.10
6079 6539 1.652012 CCACCACATGCGTTTCGTT 59.348 52.632 0.00 0.00 0.00 3.85
6080 6540 2.903547 GCCACCACATGCGTTTCGT 61.904 57.895 0.00 0.00 0.00 3.85
6081 6541 2.126888 GCCACCACATGCGTTTCG 60.127 61.111 0.00 0.00 0.00 3.46
6082 6542 0.387239 GAAGCCACCACATGCGTTTC 60.387 55.000 0.00 0.00 0.00 2.78
6083 6543 1.659794 GAAGCCACCACATGCGTTT 59.340 52.632 0.00 0.00 0.00 3.60
6084 6544 2.616330 CGAAGCCACCACATGCGTT 61.616 57.895 0.00 0.00 0.00 4.84
6085 6545 3.049674 CGAAGCCACCACATGCGT 61.050 61.111 0.00 0.00 0.00 5.24
6086 6546 3.027170 GACGAAGCCACCACATGCG 62.027 63.158 0.00 0.00 0.00 4.73
6087 6547 1.514678 TTGACGAAGCCACCACATGC 61.515 55.000 0.00 0.00 0.00 4.06
6088 6548 0.950836 TTTGACGAAGCCACCACATG 59.049 50.000 0.00 0.00 0.00 3.21
6089 6549 1.812571 GATTTGACGAAGCCACCACAT 59.187 47.619 0.00 0.00 0.00 3.21
6090 6550 1.202758 AGATTTGACGAAGCCACCACA 60.203 47.619 0.00 0.00 0.00 4.17
6091 6551 1.523758 AGATTTGACGAAGCCACCAC 58.476 50.000 0.00 0.00 0.00 4.16
6092 6552 3.410631 TTAGATTTGACGAAGCCACCA 57.589 42.857 0.00 0.00 0.00 4.17
6093 6553 4.000988 TCTTTAGATTTGACGAAGCCACC 58.999 43.478 0.00 0.00 0.00 4.61
6094 6554 5.122396 ACATCTTTAGATTTGACGAAGCCAC 59.878 40.000 0.00 0.00 31.21 5.01
6095 6555 5.122239 CACATCTTTAGATTTGACGAAGCCA 59.878 40.000 0.58 0.00 34.96 4.75
6096 6556 5.122396 ACACATCTTTAGATTTGACGAAGCC 59.878 40.000 11.70 0.00 36.15 4.35
6097 6557 6.128553 TGACACATCTTTAGATTTGACGAAGC 60.129 38.462 11.70 0.00 36.15 3.86
6098 6558 7.351414 TGACACATCTTTAGATTTGACGAAG 57.649 36.000 11.70 0.00 36.15 3.79
6099 6559 7.568679 CGTTGACACATCTTTAGATTTGACGAA 60.569 37.037 11.70 2.76 34.63 3.85
6100 6560 6.128929 CGTTGACACATCTTTAGATTTGACGA 60.129 38.462 11.70 4.21 34.63 4.20
6101 6561 6.009474 CGTTGACACATCTTTAGATTTGACG 58.991 40.000 11.70 8.02 36.15 4.35
6102 6562 7.117241 TCGTTGACACATCTTTAGATTTGAC 57.883 36.000 11.70 7.03 36.15 3.18
6103 6563 7.722795 TTCGTTGACACATCTTTAGATTTGA 57.277 32.000 11.70 0.00 36.15 2.69
6104 6564 7.058354 CGTTTCGTTGACACATCTTTAGATTTG 59.942 37.037 4.72 4.72 38.01 2.32
6105 6565 7.069569 CGTTTCGTTGACACATCTTTAGATTT 58.930 34.615 0.00 0.00 31.21 2.17
6106 6566 6.590357 CGTTTCGTTGACACATCTTTAGATT 58.410 36.000 0.00 0.00 31.21 2.40
6107 6567 5.389516 GCGTTTCGTTGACACATCTTTAGAT 60.390 40.000 0.00 0.00 34.56 1.98
6108 6568 4.084745 GCGTTTCGTTGACACATCTTTAGA 60.085 41.667 0.00 0.00 0.00 2.10
6109 6569 4.141680 GCGTTTCGTTGACACATCTTTAG 58.858 43.478 0.00 0.00 0.00 1.85
6110 6570 3.556365 TGCGTTTCGTTGACACATCTTTA 59.444 39.130 0.00 0.00 0.00 1.85
6111 6571 2.353269 TGCGTTTCGTTGACACATCTTT 59.647 40.909 0.00 0.00 0.00 2.52
6112 6572 1.937223 TGCGTTTCGTTGACACATCTT 59.063 42.857 0.00 0.00 0.00 2.40
6113 6573 1.577468 TGCGTTTCGTTGACACATCT 58.423 45.000 0.00 0.00 0.00 2.90
6114 6574 2.233355 CATGCGTTTCGTTGACACATC 58.767 47.619 0.00 0.00 0.00 3.06
6115 6575 1.601903 ACATGCGTTTCGTTGACACAT 59.398 42.857 0.00 0.00 0.00 3.21
6116 6576 1.010580 ACATGCGTTTCGTTGACACA 58.989 45.000 0.00 0.00 0.00 3.72
6117 6577 1.385038 CACATGCGTTTCGTTGACAC 58.615 50.000 0.00 0.00 0.00 3.67
6118 6578 0.306228 CCACATGCGTTTCGTTGACA 59.694 50.000 0.00 0.00 0.00 3.58
6119 6579 0.306533 ACCACATGCGTTTCGTTGAC 59.693 50.000 0.00 0.00 0.00 3.18
6120 6580 0.306228 CACCACATGCGTTTCGTTGA 59.694 50.000 0.00 0.00 0.00 3.18
6121 6581 0.660005 CCACCACATGCGTTTCGTTG 60.660 55.000 0.00 0.00 0.00 4.10
6122 6582 1.652012 CCACCACATGCGTTTCGTT 59.348 52.632 0.00 0.00 0.00 3.85
6123 6583 2.903547 GCCACCACATGCGTTTCGT 61.904 57.895 0.00 0.00 0.00 3.85
6124 6584 2.126888 GCCACCACATGCGTTTCG 60.127 61.111 0.00 0.00 0.00 3.46
6125 6585 0.387239 GAAGCCACCACATGCGTTTC 60.387 55.000 0.00 0.00 0.00 2.78
6126 6586 1.659794 GAAGCCACCACATGCGTTT 59.340 52.632 0.00 0.00 0.00 3.60
6127 6587 2.616330 CGAAGCCACCACATGCGTT 61.616 57.895 0.00 0.00 0.00 4.84
6128 6588 3.049674 CGAAGCCACCACATGCGT 61.050 61.111 0.00 0.00 0.00 5.24
6129 6589 3.027170 GACGAAGCCACCACATGCG 62.027 63.158 0.00 0.00 0.00 4.73
6130 6590 1.514678 TTGACGAAGCCACCACATGC 61.515 55.000 0.00 0.00 0.00 4.06
6131 6591 0.950836 TTTGACGAAGCCACCACATG 59.049 50.000 0.00 0.00 0.00 3.21
6173 6633 6.014499 ACGCCTATAAGCACCTTAGTGATATT 60.014 38.462 0.00 0.00 43.21 1.28
6174 6634 5.480772 ACGCCTATAAGCACCTTAGTGATAT 59.519 40.000 0.00 0.00 43.21 1.63
6181 6641 2.895404 CCCTACGCCTATAAGCACCTTA 59.105 50.000 0.00 0.00 0.00 2.69
6182 6642 1.692519 CCCTACGCCTATAAGCACCTT 59.307 52.381 0.00 0.00 0.00 3.50
6215 6675 3.386726 CGGTTCTGTCACCCCTATGAATA 59.613 47.826 0.00 0.00 32.48 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.