Multiple sequence alignment - TraesCS3D01G194100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G194100 chr3D 100.000 4984 0 0 1 4984 185070749 185075732 0.000000e+00 9204
1 TraesCS3D01G194100 chr3D 84.927 889 97 23 3135 3988 519318949 519318063 0.000000e+00 865
2 TraesCS3D01G194100 chr3D 80.484 620 90 20 1865 2461 519321498 519320887 3.540000e-121 446
3 TraesCS3D01G194100 chr3D 79.894 378 51 16 1245 1614 519277911 519278271 2.300000e-63 254
4 TraesCS3D01G194100 chr3D 89.706 136 10 1 2893 3024 519319083 519318948 2.390000e-38 171
5 TraesCS3D01G194100 chr3D 95.312 64 3 0 1061 1124 519259801 519259864 8.830000e-18 102
6 TraesCS3D01G194100 chr3A 94.631 2645 66 21 1466 4076 243874549 243877151 0.000000e+00 4028
7 TraesCS3D01G194100 chr3A 92.955 1462 54 19 1 1438 243873115 243874551 0.000000e+00 2084
8 TraesCS3D01G194100 chr3A 88.745 462 33 10 4456 4906 243898886 243899339 9.430000e-152 547
9 TraesCS3D01G194100 chr3A 87.908 306 31 4 3686 3985 654355632 654355937 6.140000e-94 355
10 TraesCS3D01G194100 chr3A 90.476 252 23 1 4176 4427 243898640 243898890 1.030000e-86 331
11 TraesCS3D01G194100 chr3A 80.256 390 53 14 2083 2459 654355068 654355446 6.360000e-69 272
12 TraesCS3D01G194100 chr3A 83.682 239 28 7 1788 2026 654354815 654355042 1.090000e-51 215
13 TraesCS3D01G194100 chr3A 93.182 88 4 2 4897 4984 447800864 447800949 1.460000e-25 128
14 TraesCS3D01G194100 chr3B 92.985 1397 50 15 1661 3040 263797884 263799249 0.000000e+00 1993
15 TraesCS3D01G194100 chr3B 85.747 1726 105 63 11 1674 263796217 263797863 0.000000e+00 1694
16 TraesCS3D01G194100 chr3B 94.351 832 36 1 3363 4194 263799959 263800779 0.000000e+00 1266
17 TraesCS3D01G194100 chr3B 92.620 664 40 6 4243 4906 263803336 263803990 0.000000e+00 946
18 TraesCS3D01G194100 chr3B 84.677 620 70 12 3396 3992 683520166 683520783 3.320000e-166 595
19 TraesCS3D01G194100 chr3B 96.203 316 11 1 3039 3353 263799561 263799876 2.660000e-142 516
20 TraesCS3D01G194100 chr4A 82.197 865 126 21 3135 3988 716818142 716817295 0.000000e+00 719
21 TraesCS3D01G194100 chr4A 80.131 458 76 10 1807 2252 716819558 716819104 1.340000e-85 327
22 TraesCS3D01G194100 chr4A 96.341 82 3 0 4903 4984 359460985 359460904 8.700000e-28 135
23 TraesCS3D01G194100 chr2A 97.468 79 2 0 4906 4984 276488713 276488635 8.700000e-28 135
24 TraesCS3D01G194100 chr7A 95.181 83 4 0 4902 4984 636638382 636638464 1.130000e-26 132
25 TraesCS3D01G194100 chr7A 93.023 86 6 0 4899 4984 241794948 241794863 5.240000e-25 126
26 TraesCS3D01G194100 chr7A 90.426 94 9 0 2905 2998 16752593 16752686 1.880000e-24 124
27 TraesCS3D01G194100 chr7A 74.000 350 56 20 1057 1404 16750839 16751155 5.280000e-20 110
28 TraesCS3D01G194100 chr1D 94.118 85 5 0 4900 4984 70834872 70834788 4.050000e-26 130
29 TraesCS3D01G194100 chr5A 93.023 86 6 0 4899 4984 558067689 558067604 5.240000e-25 126
30 TraesCS3D01G194100 chr4B 90.625 96 6 3 4890 4984 132020485 132020392 1.880000e-24 124
31 TraesCS3D01G194100 chr1B 87.619 105 10 3 4883 4984 275904892 275904788 8.760000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G194100 chr3D 185070749 185075732 4983 False 9204.000000 9204 100.000000 1 4984 1 chr3D.!!$F1 4983
1 TraesCS3D01G194100 chr3D 519318063 519321498 3435 True 494.000000 865 85.039000 1865 3988 3 chr3D.!!$R1 2123
2 TraesCS3D01G194100 chr3A 243873115 243877151 4036 False 3056.000000 4028 93.793000 1 4076 2 chr3A.!!$F2 4075
3 TraesCS3D01G194100 chr3A 243898640 243899339 699 False 439.000000 547 89.610500 4176 4906 2 chr3A.!!$F3 730
4 TraesCS3D01G194100 chr3A 654354815 654355937 1122 False 280.666667 355 83.948667 1788 3985 3 chr3A.!!$F4 2197
5 TraesCS3D01G194100 chr3B 263796217 263803990 7773 False 1283.000000 1993 92.381200 11 4906 5 chr3B.!!$F2 4895
6 TraesCS3D01G194100 chr3B 683520166 683520783 617 False 595.000000 595 84.677000 3396 3992 1 chr3B.!!$F1 596
7 TraesCS3D01G194100 chr4A 716817295 716819558 2263 True 523.000000 719 81.164000 1807 3988 2 chr4A.!!$R2 2181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 615 0.178932 AACCAAAAGGAAGGAGGCCC 60.179 55.0 0.00 0.0 0.0 5.80 F
1456 1559 0.034670 AGGCTGCAACCCTTCTGATC 60.035 55.0 1.51 0.0 0.0 2.92 F
2295 2499 0.179032 TCTTGCAAGCTGAACGGGAA 60.179 50.0 21.99 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 2499 0.249322 CACGTTCAGGACAAGGACGT 60.249 55.0 0.00 0.0 0.00 4.34 R
2298 2502 0.679505 CCTCACGTTCAGGACAAGGA 59.320 55.0 4.48 0.0 31.91 3.36 R
4134 6240 1.316651 GAATTGCTGGCTCCATCTCC 58.683 55.0 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 4.164258 AGCAACCACTGGTGAAGC 57.836 55.556 0.00 6.94 35.34 3.86
191 192 4.573900 CAGTAGAGTCCAAATGCTCACTT 58.426 43.478 0.00 0.00 34.39 3.16
336 351 2.082231 CATCCCTCAGTGTCAAGCAAG 58.918 52.381 0.00 0.00 0.00 4.01
370 385 5.237344 AGAAGAAAAGGAACGACAATCTGTG 59.763 40.000 0.00 0.00 0.00 3.66
381 396 2.229543 GACAATCTGTGCAGCATTTGGA 59.770 45.455 0.00 0.00 0.00 3.53
382 397 2.829720 ACAATCTGTGCAGCATTTGGAT 59.170 40.909 0.00 0.00 0.00 3.41
383 398 4.018490 ACAATCTGTGCAGCATTTGGATA 58.982 39.130 0.00 0.00 0.00 2.59
384 399 4.647853 ACAATCTGTGCAGCATTTGGATAT 59.352 37.500 0.00 0.00 0.00 1.63
385 400 5.220381 CAATCTGTGCAGCATTTGGATATC 58.780 41.667 0.00 0.00 0.00 1.63
386 401 3.888583 TCTGTGCAGCATTTGGATATCA 58.111 40.909 0.00 0.00 0.00 2.15
403 418 6.097412 TGGATATCAATATCATCTCAGACGGG 59.903 42.308 4.83 0.00 40.67 5.28
411 426 2.599645 ATCTCAGACGGGCATGTGGC 62.600 60.000 0.00 0.00 43.74 5.01
514 537 1.589716 GGTAAAGCAGCAGCACCAGG 61.590 60.000 3.17 0.00 45.49 4.45
520 543 1.747325 GCAGCAGCACCAGGGAAAAA 61.747 55.000 0.00 0.00 41.58 1.94
532 555 6.015434 GCACCAGGGAAAAAGAAGATAAAGAA 60.015 38.462 0.00 0.00 0.00 2.52
548 571 7.449247 AGATAAAGAAAGAGCAGTCAGAGTTT 58.551 34.615 0.00 0.00 0.00 2.66
588 611 6.149633 CGATAAACAAACCAAAAGGAAGGAG 58.850 40.000 0.00 0.00 0.00 3.69
590 613 2.039418 ACAAACCAAAAGGAAGGAGGC 58.961 47.619 0.00 0.00 0.00 4.70
591 614 1.344438 CAAACCAAAAGGAAGGAGGCC 59.656 52.381 0.00 0.00 0.00 5.19
592 615 0.178932 AACCAAAAGGAAGGAGGCCC 60.179 55.000 0.00 0.00 0.00 5.80
594 617 1.378762 CAAAAGGAAGGAGGCCCGA 59.621 57.895 0.00 0.00 37.58 5.14
595 618 0.678048 CAAAAGGAAGGAGGCCCGAG 60.678 60.000 0.00 0.00 37.58 4.63
596 619 2.485780 AAAAGGAAGGAGGCCCGAGC 62.486 60.000 0.00 0.00 37.58 5.03
618 653 0.621609 TAGCTACAAATTGGGCCCGT 59.378 50.000 19.37 11.19 0.00 5.28
689 734 3.308402 GGAGTGAGGGATCAATGGTGAAA 60.308 47.826 0.00 0.00 37.30 2.69
725 770 2.823147 CTCGTCCTCGCCTACCGT 60.823 66.667 0.00 0.00 38.35 4.83
735 780 1.722636 CGCCTACCGTCTCCTGGTAC 61.723 65.000 0.00 0.00 40.96 3.34
855 941 5.705441 GTGTCTCAACCCTGAAATGTGATAA 59.295 40.000 0.00 0.00 0.00 1.75
864 950 5.392380 CCCTGAAATGTGATAACTCAAGTGC 60.392 44.000 0.00 0.00 31.85 4.40
882 968 3.449018 AGTGCTAGGAGTTGATCGATTGT 59.551 43.478 0.00 0.00 0.00 2.71
883 969 4.081420 AGTGCTAGGAGTTGATCGATTGTT 60.081 41.667 0.00 0.00 0.00 2.83
884 970 4.033358 GTGCTAGGAGTTGATCGATTGTTG 59.967 45.833 0.00 0.00 0.00 3.33
885 971 3.001736 GCTAGGAGTTGATCGATTGTTGC 59.998 47.826 0.00 0.00 0.00 4.17
886 972 2.359900 AGGAGTTGATCGATTGTTGCC 58.640 47.619 0.00 0.00 0.00 4.52
1017 1107 1.868251 GATGCTGTCGTCCGTCGTC 60.868 63.158 0.00 0.00 40.80 4.20
1018 1108 3.662623 ATGCTGTCGTCCGTCGTCG 62.663 63.158 0.00 0.00 40.80 5.12
1019 1109 4.380628 GCTGTCGTCCGTCGTCGT 62.381 66.667 0.71 0.00 40.80 4.34
1146 1236 3.110178 CTGTCCGGTTCGTTCGGC 61.110 66.667 0.00 5.58 46.43 5.54
1452 1555 4.507969 CAAGGCTGCAACCCTTCT 57.492 55.556 13.83 0.00 40.63 2.85
1453 1556 1.962144 CAAGGCTGCAACCCTTCTG 59.038 57.895 13.83 3.53 40.63 3.02
1454 1557 0.538057 CAAGGCTGCAACCCTTCTGA 60.538 55.000 13.83 0.00 40.63 3.27
1455 1558 0.407139 AAGGCTGCAACCCTTCTGAT 59.593 50.000 11.52 0.00 38.25 2.90
1456 1559 0.034670 AGGCTGCAACCCTTCTGATC 60.035 55.000 1.51 0.00 0.00 2.92
1457 1560 1.034292 GGCTGCAACCCTTCTGATCC 61.034 60.000 0.50 0.00 0.00 3.36
1458 1561 1.372087 GCTGCAACCCTTCTGATCCG 61.372 60.000 0.00 0.00 0.00 4.18
1459 1562 1.372087 CTGCAACCCTTCTGATCCGC 61.372 60.000 0.00 0.00 0.00 5.54
1460 1563 2.464459 GCAACCCTTCTGATCCGCG 61.464 63.158 0.00 0.00 0.00 6.46
1461 1564 2.125106 AACCCTTCTGATCCGCGC 60.125 61.111 0.00 0.00 0.00 6.86
1462 1565 4.514577 ACCCTTCTGATCCGCGCG 62.515 66.667 25.67 25.67 0.00 6.86
1464 1567 4.880537 CCTTCTGATCCGCGCGCT 62.881 66.667 30.48 14.34 0.00 5.92
1465 1568 3.326210 CTTCTGATCCGCGCGCTC 61.326 66.667 30.48 22.75 0.00 5.03
1466 1569 4.128388 TTCTGATCCGCGCGCTCA 62.128 61.111 30.48 25.96 0.00 4.26
1467 1570 3.641159 TTCTGATCCGCGCGCTCAA 62.641 57.895 30.48 14.58 0.00 3.02
1468 1571 3.188100 CTGATCCGCGCGCTCAAA 61.188 61.111 30.48 11.81 0.00 2.69
1496 1621 2.053627 GATTTGGTGTCGTACGTCGTT 58.946 47.619 16.05 0.00 40.80 3.85
1602 1727 2.072298 CCGGACTTCAAGAAGAGCAAG 58.928 52.381 16.16 6.17 40.79 4.01
1620 1745 4.214119 AGCAAGTGCAACAAGTATGTACTG 59.786 41.667 6.00 0.00 41.91 2.74
1936 2102 1.841663 GCCACGTACAAGGTGTGCAG 61.842 60.000 0.00 0.00 32.27 4.41
2159 2341 0.594602 CCTACACGGTCGTCAACTCA 59.405 55.000 0.00 0.00 0.00 3.41
2165 2347 1.666011 GGTCGTCAACTCAGCTCCA 59.334 57.895 0.00 0.00 0.00 3.86
2289 2493 3.489738 GCTTCTTGTTCTTGCAAGCTGAA 60.490 43.478 21.99 16.89 43.92 3.02
2292 2496 0.662619 TGTTCTTGCAAGCTGAACGG 59.337 50.000 21.99 0.00 41.88 4.44
2295 2499 0.179032 TCTTGCAAGCTGAACGGGAA 60.179 50.000 21.99 0.00 0.00 3.97
2468 2710 0.241213 TTGAAGCGTCCGTCTCTCAG 59.759 55.000 0.00 0.00 0.00 3.35
2485 2727 3.188786 GCGTCACGGGTGCAGATC 61.189 66.667 0.00 0.00 0.00 2.75
2883 4516 7.878644 ACCAGAAAGGAAGTAAAGTAGATGAAC 59.121 37.037 0.00 0.00 41.22 3.18
2892 4525 6.516718 AGTAAAGTAGATGAACGATGATGGG 58.483 40.000 0.00 0.00 0.00 4.00
3008 4678 4.394712 GGCCCTGGTGGTCTCACG 62.395 72.222 0.00 0.00 44.50 4.35
3032 4702 4.762289 ATCCATCCTCAAGGTCAGTAAC 57.238 45.455 0.00 0.00 36.34 2.50
3356 5356 5.478332 CAGCTCTCATGACCACAGGTATATA 59.522 44.000 0.00 0.00 35.25 0.86
3385 5458 5.452777 AGTCTCGACAAATTTAAGCAAAGC 58.547 37.500 0.00 0.00 0.00 3.51
3411 5484 2.159379 GGGCATTTCTAACCAAAGCGAG 60.159 50.000 0.00 0.00 0.00 5.03
3886 5988 0.788391 GCGTACGAGGTGAGTTTTGG 59.212 55.000 21.65 0.00 0.00 3.28
4086 6192 3.809234 TGAATTTCTTTGCGTGTGATCG 58.191 40.909 0.00 0.00 0.00 3.69
4134 6240 4.579869 AGGCTTGACATAAAGTGTACCTG 58.420 43.478 0.00 0.00 42.36 4.00
4137 6243 4.631813 GCTTGACATAAAGTGTACCTGGAG 59.368 45.833 0.00 0.00 42.36 3.86
4174 6280 0.175073 CTTTTACTCCCTCCGTCCCG 59.825 60.000 0.00 0.00 0.00 5.14
4234 6340 2.561733 TAGATTCACCTGAACGCTCG 57.438 50.000 0.00 0.00 36.80 5.03
4238 6344 2.430382 TTCACCTGAACGCTCGGTCC 62.430 60.000 4.77 0.00 0.00 4.46
4289 8914 0.040336 ACGATCGTCGATTGATCCCG 60.040 55.000 25.87 17.32 43.74 5.14
4302 8927 4.804420 TCCCGCCTGGAGCTCCAT 62.804 66.667 35.11 0.00 46.46 3.41
4343 8968 4.618460 CGCTAGGAGCAAGTTGTTCTCTTA 60.618 45.833 17.80 9.94 42.58 2.10
4349 8974 3.060602 GCAAGTTGTTCTCTTAGCGAGT 58.939 45.455 4.48 0.00 40.75 4.18
4381 9006 0.953471 CCAAATCGTCGGGCTCACAA 60.953 55.000 0.00 0.00 0.00 3.33
4387 9012 2.029844 GTCGGGCTCACAAGTCAGC 61.030 63.158 0.00 0.00 34.65 4.26
4438 9096 4.566545 CATAGCAAAATGTTATGGGCGA 57.433 40.909 6.37 0.00 37.73 5.54
4439 9097 5.125100 CATAGCAAAATGTTATGGGCGAT 57.875 39.130 6.37 0.00 37.73 4.58
4440 9098 3.441496 AGCAAAATGTTATGGGCGATG 57.559 42.857 0.00 0.00 0.00 3.84
4441 9099 2.101249 AGCAAAATGTTATGGGCGATGG 59.899 45.455 0.00 0.00 0.00 3.51
4442 9100 2.802774 GCAAAATGTTATGGGCGATGGG 60.803 50.000 0.00 0.00 0.00 4.00
4443 9101 2.430332 CAAAATGTTATGGGCGATGGGT 59.570 45.455 0.00 0.00 0.00 4.51
4444 9102 1.691196 AATGTTATGGGCGATGGGTG 58.309 50.000 0.00 0.00 0.00 4.61
4445 9103 0.823356 ATGTTATGGGCGATGGGTGC 60.823 55.000 0.00 0.00 0.00 5.01
4446 9104 2.203139 TTATGGGCGATGGGTGCG 60.203 61.111 0.00 0.00 0.00 5.34
4447 9105 3.765894 TTATGGGCGATGGGTGCGG 62.766 63.158 0.00 0.00 0.00 5.69
4458 9116 3.597728 GGTGCGGGCGGTTTCAAA 61.598 61.111 0.00 0.00 0.00 2.69
4459 9117 2.413765 GTGCGGGCGGTTTCAAAA 59.586 55.556 0.00 0.00 0.00 2.44
4460 9118 1.660264 GTGCGGGCGGTTTCAAAAG 60.660 57.895 0.00 0.00 0.00 2.27
4486 9144 4.162131 GCTCTTCCTCTCCTCATTTCTCTT 59.838 45.833 0.00 0.00 0.00 2.85
4556 9214 0.765510 GCCGGATCCCATTACTCCTT 59.234 55.000 5.05 0.00 0.00 3.36
4567 9225 3.411446 CATTACTCCTTGCCAACACAGA 58.589 45.455 0.00 0.00 0.00 3.41
4581 9239 3.106242 ACACAGACGTGAAGCAACATA 57.894 42.857 0.00 0.00 46.80 2.29
4604 9262 6.397217 AGTATCCCTTCCCTACTCTATCTC 57.603 45.833 0.00 0.00 0.00 2.75
4659 9317 0.736636 GAATTTTTAGGGGGCGACGG 59.263 55.000 0.00 0.00 0.00 4.79
4689 9356 6.436218 GTGGGGGTGTGAAAGAGTATTTAATT 59.564 38.462 0.00 0.00 0.00 1.40
4832 9501 0.961019 GGACAGTGGAAAGCATGCAA 59.039 50.000 21.98 0.00 0.00 4.08
4857 9526 8.117813 AGTGACAAAAGGAAACAAGAAACTAA 57.882 30.769 0.00 0.00 0.00 2.24
4909 9578 9.781834 TCACAAAAGACACTAAAGTAAATTGTG 57.218 29.630 0.00 0.00 43.03 3.33
4910 9579 9.781834 CACAAAAGACACTAAAGTAAATTGTGA 57.218 29.630 14.60 0.00 43.87 3.58
4911 9580 9.783256 ACAAAAGACACTAAAGTAAATTGTGAC 57.217 29.630 0.00 0.00 33.41 3.67
4912 9581 9.781834 CAAAAGACACTAAAGTAAATTGTGACA 57.218 29.630 0.00 0.00 33.41 3.58
4913 9582 9.783256 AAAAGACACTAAAGTAAATTGTGACAC 57.217 29.630 0.00 0.00 33.41 3.67
4914 9583 7.492352 AGACACTAAAGTAAATTGTGACACC 57.508 36.000 2.45 0.00 33.41 4.16
4915 9584 6.485648 AGACACTAAAGTAAATTGTGACACCC 59.514 38.462 2.45 0.00 33.41 4.61
4916 9585 6.362248 ACACTAAAGTAAATTGTGACACCCT 58.638 36.000 2.45 0.00 33.41 4.34
4917 9586 6.485648 ACACTAAAGTAAATTGTGACACCCTC 59.514 38.462 2.45 0.00 33.41 4.30
4918 9587 5.699458 ACTAAAGTAAATTGTGACACCCTCG 59.301 40.000 2.45 0.00 0.00 4.63
4919 9588 4.345859 AAGTAAATTGTGACACCCTCGA 57.654 40.909 2.45 0.00 0.00 4.04
4920 9589 4.553330 AGTAAATTGTGACACCCTCGAT 57.447 40.909 2.45 0.00 0.00 3.59
4921 9590 4.906618 AGTAAATTGTGACACCCTCGATT 58.093 39.130 2.45 0.00 0.00 3.34
4922 9591 4.935808 AGTAAATTGTGACACCCTCGATTC 59.064 41.667 2.45 0.00 0.00 2.52
4923 9592 3.417069 AATTGTGACACCCTCGATTCA 57.583 42.857 2.45 0.00 0.00 2.57
4924 9593 2.920724 TTGTGACACCCTCGATTCAA 57.079 45.000 2.45 0.00 0.00 2.69
4925 9594 3.417069 TTGTGACACCCTCGATTCAAT 57.583 42.857 2.45 0.00 0.00 2.57
4926 9595 4.545208 TTGTGACACCCTCGATTCAATA 57.455 40.909 2.45 0.00 0.00 1.90
4927 9596 4.545208 TGTGACACCCTCGATTCAATAA 57.455 40.909 2.45 0.00 0.00 1.40
4928 9597 5.097742 TGTGACACCCTCGATTCAATAAT 57.902 39.130 2.45 0.00 0.00 1.28
4929 9598 6.228616 TGTGACACCCTCGATTCAATAATA 57.771 37.500 2.45 0.00 0.00 0.98
4930 9599 6.046593 TGTGACACCCTCGATTCAATAATAC 58.953 40.000 2.45 0.00 0.00 1.89
4931 9600 6.046593 GTGACACCCTCGATTCAATAATACA 58.953 40.000 0.00 0.00 0.00 2.29
4932 9601 6.018994 GTGACACCCTCGATTCAATAATACAC 60.019 42.308 0.00 0.00 0.00 2.90
4933 9602 6.127168 TGACACCCTCGATTCAATAATACACT 60.127 38.462 0.00 0.00 0.00 3.55
4934 9603 7.068962 TGACACCCTCGATTCAATAATACACTA 59.931 37.037 0.00 0.00 0.00 2.74
4935 9604 7.788026 ACACCCTCGATTCAATAATACACTAA 58.212 34.615 0.00 0.00 0.00 2.24
4936 9605 8.429641 ACACCCTCGATTCAATAATACACTAAT 58.570 33.333 0.00 0.00 0.00 1.73
4937 9606 8.926710 CACCCTCGATTCAATAATACACTAATC 58.073 37.037 0.00 0.00 0.00 1.75
4938 9607 8.647796 ACCCTCGATTCAATAATACACTAATCA 58.352 33.333 0.00 0.00 0.00 2.57
4939 9608 9.658799 CCCTCGATTCAATAATACACTAATCAT 57.341 33.333 0.00 0.00 0.00 2.45
4946 9615 9.535878 TTCAATAATACACTAATCATACACGCA 57.464 29.630 0.00 0.00 0.00 5.24
4947 9616 9.535878 TCAATAATACACTAATCATACACGCAA 57.464 29.630 0.00 0.00 0.00 4.85
4962 9631 2.125168 CGCAAACGTGTACGATCAAG 57.875 50.000 11.79 0.00 43.02 3.02
4963 9632 1.717113 CGCAAACGTGTACGATCAAGA 59.283 47.619 11.79 0.00 43.02 3.02
4964 9633 2.344441 CGCAAACGTGTACGATCAAGAT 59.656 45.455 11.79 0.00 43.02 2.40
4965 9634 3.539592 CGCAAACGTGTACGATCAAGATC 60.540 47.826 11.79 0.00 43.02 2.75
4966 9635 3.366724 GCAAACGTGTACGATCAAGATCA 59.633 43.478 11.79 0.00 43.02 2.92
4967 9636 4.490959 GCAAACGTGTACGATCAAGATCAG 60.491 45.833 11.79 5.82 43.02 2.90
4968 9637 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
4969 9638 2.099263 ACGTGTACGATCAAGATCAGGG 59.901 50.000 11.79 0.00 43.02 4.45
4970 9639 2.357952 CGTGTACGATCAAGATCAGGGA 59.642 50.000 10.39 0.00 43.02 4.20
4971 9640 3.707793 GTGTACGATCAAGATCAGGGAC 58.292 50.000 10.39 2.84 37.69 4.46
4972 9641 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
4973 9642 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
4974 9643 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
4975 9644 3.303938 ACGATCAAGATCAGGGACTCAT 58.696 45.455 10.39 0.00 34.60 2.90
4976 9645 3.069300 ACGATCAAGATCAGGGACTCATG 59.931 47.826 10.39 0.00 34.60 3.07
4977 9646 3.554544 CGATCAAGATCAGGGACTCATGG 60.555 52.174 10.39 0.00 34.60 3.66
4978 9647 2.121948 TCAAGATCAGGGACTCATGGG 58.878 52.381 0.00 0.00 34.60 4.00
4979 9648 2.121948 CAAGATCAGGGACTCATGGGA 58.878 52.381 0.00 0.00 34.60 4.37
4980 9649 2.507058 CAAGATCAGGGACTCATGGGAA 59.493 50.000 0.00 0.00 34.60 3.97
4981 9650 2.406559 AGATCAGGGACTCATGGGAAG 58.593 52.381 0.00 0.00 34.60 3.46
4982 9651 2.022625 AGATCAGGGACTCATGGGAAGA 60.023 50.000 0.00 0.00 34.60 2.87
4983 9652 2.575921 TCAGGGACTCATGGGAAGAT 57.424 50.000 0.00 0.00 34.60 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.701704 CCAAGAATCTTTTGCCGTGC 58.298 50.000 0.00 0.00 0.00 5.34
166 167 2.935201 GAGCATTTGGACTCTACTGCTG 59.065 50.000 0.00 0.00 39.86 4.41
191 192 1.839354 TGCCCATGATTAGAGCTGACA 59.161 47.619 0.00 0.00 0.00 3.58
355 370 0.166814 GCTGCACAGATTGTCGTTCC 59.833 55.000 0.81 0.00 0.00 3.62
359 374 2.247637 CAAATGCTGCACAGATTGTCG 58.752 47.619 3.57 0.00 0.00 4.35
360 375 2.229543 TCCAAATGCTGCACAGATTGTC 59.770 45.455 3.57 0.00 30.71 3.18
370 385 7.997482 AGATGATATTGATATCCAAATGCTGC 58.003 34.615 0.00 0.00 38.66 5.25
381 396 5.423290 TGCCCGTCTGAGATGATATTGATAT 59.577 40.000 2.61 0.00 0.00 1.63
382 397 4.772100 TGCCCGTCTGAGATGATATTGATA 59.228 41.667 2.61 0.00 0.00 2.15
383 398 3.580022 TGCCCGTCTGAGATGATATTGAT 59.420 43.478 2.61 0.00 0.00 2.57
384 399 2.965147 TGCCCGTCTGAGATGATATTGA 59.035 45.455 2.61 0.00 0.00 2.57
385 400 3.391506 TGCCCGTCTGAGATGATATTG 57.608 47.619 2.61 0.00 0.00 1.90
386 401 3.326006 ACATGCCCGTCTGAGATGATATT 59.674 43.478 2.61 0.00 0.00 1.28
416 431 2.345502 CTAGTCGTCGTCGTCGCCTC 62.346 65.000 7.01 1.19 38.33 4.70
418 433 1.959899 TTCTAGTCGTCGTCGTCGCC 61.960 60.000 7.01 0.00 38.33 5.54
433 448 4.697352 GCTTCTCATGGAAACTGCTTTCTA 59.303 41.667 0.00 0.00 36.71 2.10
514 537 8.572185 ACTGCTCTTTCTTTATCTTCTTTTTCC 58.428 33.333 0.00 0.00 0.00 3.13
520 543 7.039082 ACTCTGACTGCTCTTTCTTTATCTTCT 60.039 37.037 0.00 0.00 0.00 2.85
532 555 5.991933 TCATCTAAACTCTGACTGCTCTT 57.008 39.130 0.00 0.00 0.00 2.85
596 619 1.692411 GGCCCAATTTGTAGCTAGGG 58.308 55.000 8.77 8.77 39.33 3.53
597 620 1.692411 GGGCCCAATTTGTAGCTAGG 58.308 55.000 19.95 0.00 0.00 3.02
598 621 1.308998 CGGGCCCAATTTGTAGCTAG 58.691 55.000 24.92 0.00 0.00 3.42
599 622 0.621609 ACGGGCCCAATTTGTAGCTA 59.378 50.000 24.92 0.00 0.00 3.32
631 673 6.918067 AGAAATGGAGTGACCGATATGATA 57.082 37.500 0.00 0.00 42.61 2.15
703 748 2.194212 TAGGCGAGGACGAGGATGC 61.194 63.158 0.00 0.00 42.66 3.91
735 780 1.078567 GTGCTTCAGCTGAGAGGGG 60.079 63.158 17.43 7.33 42.66 4.79
832 887 3.855255 TCACATTTCAGGGTTGAGACA 57.145 42.857 0.00 0.00 34.15 3.41
833 888 5.940470 AGTTATCACATTTCAGGGTTGAGAC 59.060 40.000 0.00 0.00 34.15 3.36
835 890 5.939883 TGAGTTATCACATTTCAGGGTTGAG 59.060 40.000 0.00 0.00 34.15 3.02
836 891 5.875224 TGAGTTATCACATTTCAGGGTTGA 58.125 37.500 0.00 0.00 0.00 3.18
837 892 6.207417 ACTTGAGTTATCACATTTCAGGGTTG 59.793 38.462 0.00 0.00 34.35 3.77
855 941 3.119316 CGATCAACTCCTAGCACTTGAGT 60.119 47.826 0.00 0.00 40.94 3.41
864 950 3.557595 GGCAACAATCGATCAACTCCTAG 59.442 47.826 0.00 0.00 0.00 3.02
882 968 0.835941 AACAAACCATGGCAAGGCAA 59.164 45.000 13.04 0.00 0.00 4.52
883 969 0.835941 AAACAAACCATGGCAAGGCA 59.164 45.000 13.04 0.00 0.00 4.75
884 970 1.202627 TCAAACAAACCATGGCAAGGC 60.203 47.619 13.04 0.00 0.00 4.35
885 971 2.482864 GTCAAACAAACCATGGCAAGG 58.517 47.619 13.04 7.31 0.00 3.61
886 972 2.126467 CGTCAAACAAACCATGGCAAG 58.874 47.619 13.04 3.79 0.00 4.01
1438 1541 1.034292 GGATCAGAAGGGTTGCAGCC 61.034 60.000 11.82 11.82 35.59 4.85
1439 1542 1.372087 CGGATCAGAAGGGTTGCAGC 61.372 60.000 0.00 0.00 0.00 5.25
1440 1543 1.372087 GCGGATCAGAAGGGTTGCAG 61.372 60.000 0.00 0.00 0.00 4.41
1441 1544 1.377202 GCGGATCAGAAGGGTTGCA 60.377 57.895 0.00 0.00 0.00 4.08
1442 1545 2.464459 CGCGGATCAGAAGGGTTGC 61.464 63.158 0.00 0.00 0.00 4.17
1443 1546 2.464459 GCGCGGATCAGAAGGGTTG 61.464 63.158 8.83 0.00 0.00 3.77
1444 1547 2.125106 GCGCGGATCAGAAGGGTT 60.125 61.111 8.83 0.00 0.00 4.11
1445 1548 4.514577 CGCGCGGATCAGAAGGGT 62.515 66.667 24.84 0.00 0.00 4.34
1447 1550 4.880537 AGCGCGCGGATCAGAAGG 62.881 66.667 33.06 0.00 0.00 3.46
1448 1551 3.326210 GAGCGCGCGGATCAGAAG 61.326 66.667 33.06 0.00 0.00 2.85
1449 1552 3.641159 TTGAGCGCGCGGATCAGAA 62.641 57.895 33.06 7.29 42.92 3.02
1450 1553 3.641159 TTTGAGCGCGCGGATCAGA 62.641 57.895 33.06 16.48 42.92 3.27
1451 1554 3.188100 TTTGAGCGCGCGGATCAG 61.188 61.111 33.06 1.90 42.92 2.90
1452 1555 3.487202 GTTTGAGCGCGCGGATCA 61.487 61.111 33.06 21.42 39.79 2.92
1453 1556 4.223964 GGTTTGAGCGCGCGGATC 62.224 66.667 33.06 18.79 0.00 3.36
1454 1557 4.760047 AGGTTTGAGCGCGCGGAT 62.760 61.111 33.06 8.62 0.00 4.18
1455 1558 4.980805 AAGGTTTGAGCGCGCGGA 62.981 61.111 33.06 13.81 0.00 5.54
1456 1559 2.999363 AAAAAGGTTTGAGCGCGCGG 62.999 55.000 33.06 13.66 0.00 6.46
1457 1560 1.657181 AAAAAGGTTTGAGCGCGCG 60.657 52.632 28.44 28.44 0.00 6.86
1458 1561 0.593773 TCAAAAAGGTTTGAGCGCGC 60.594 50.000 26.66 26.66 46.48 6.86
1459 1562 3.542825 TCAAAAAGGTTTGAGCGCG 57.457 47.368 0.00 0.00 46.48 6.86
1465 1568 4.867608 ACGACACCAAATCAAAAAGGTTTG 59.132 37.500 0.00 0.00 44.71 2.93
1466 1569 5.079689 ACGACACCAAATCAAAAAGGTTT 57.920 34.783 0.00 0.00 30.44 3.27
1467 1570 4.729227 ACGACACCAAATCAAAAAGGTT 57.271 36.364 0.00 0.00 30.44 3.50
1468 1571 4.260866 CGTACGACACCAAATCAAAAAGGT 60.261 41.667 10.44 0.00 33.91 3.50
1496 1621 1.681327 GACTCCGGCCAGACACCTA 60.681 63.158 2.24 0.00 0.00 3.08
1602 1727 2.811431 TGCCAGTACATACTTGTTGCAC 59.189 45.455 0.00 0.00 37.28 4.57
2132 2313 1.324740 CGACCGTGTAGGGATTGGGA 61.325 60.000 0.00 0.00 46.96 4.37
2159 2341 1.406065 CGGTGAGGATCCATGGAGCT 61.406 60.000 28.11 14.98 0.00 4.09
2165 2347 2.797278 GGCGACGGTGAGGATCCAT 61.797 63.158 15.82 0.00 0.00 3.41
2292 2496 1.509703 GTTCAGGACAAGGACGTTCC 58.490 55.000 0.00 0.00 36.58 3.62
2295 2499 0.249322 CACGTTCAGGACAAGGACGT 60.249 55.000 0.00 0.00 0.00 4.34
2297 2501 1.605712 CCTCACGTTCAGGACAAGGAC 60.606 57.143 4.48 0.00 31.91 3.85
2298 2502 0.679505 CCTCACGTTCAGGACAAGGA 59.320 55.000 4.48 0.00 31.91 3.36
2299 2503 0.951040 GCCTCACGTTCAGGACAAGG 60.951 60.000 13.63 0.00 31.91 3.61
2300 2504 1.284982 CGCCTCACGTTCAGGACAAG 61.285 60.000 13.63 0.00 36.87 3.16
2301 2505 1.300620 CGCCTCACGTTCAGGACAA 60.301 57.895 13.63 0.00 36.87 3.18
2302 2506 2.338620 CGCCTCACGTTCAGGACA 59.661 61.111 13.63 0.00 36.87 4.02
2468 2710 3.188786 GATCTGCACCCGTGACGC 61.189 66.667 0.00 0.00 0.00 5.19
2485 2727 1.645034 AATTCATCCGTCTGCACTCG 58.355 50.000 0.00 0.00 0.00 4.18
3008 4678 2.507471 ACTGACCTTGAGGATGGATTCC 59.493 50.000 3.59 0.00 45.85 3.01
3356 5356 6.649141 TGCTTAAATTTGTCGAGACTATGTGT 59.351 34.615 0.00 0.00 0.00 3.72
3385 5458 4.678840 GCTTTGGTTAGAAATGCCCATCTG 60.679 45.833 0.00 0.00 0.00 2.90
4114 6220 4.575885 TCCAGGTACACTTTATGTCAAGC 58.424 43.478 0.00 0.00 42.09 4.01
4134 6240 1.316651 GAATTGCTGGCTCCATCTCC 58.683 55.000 0.00 0.00 0.00 3.71
4137 6243 1.760192 AGTGAATTGCTGGCTCCATC 58.240 50.000 0.00 0.00 0.00 3.51
4211 6317 5.041287 CGAGCGTTCAGGTGAATCTAAATA 58.959 41.667 0.00 0.00 36.33 1.40
4221 6327 2.432628 GGACCGAGCGTTCAGGTG 60.433 66.667 17.38 0.00 38.57 4.00
4229 6335 3.114616 CAGTTGCAGGACCGAGCG 61.115 66.667 7.35 0.00 0.00 5.03
4264 8889 1.516386 AATCGACGATCGTGCGCTT 60.516 52.632 28.12 21.12 41.35 4.68
4349 8974 0.726827 GATTTGGATTCGTGCGCTCA 59.273 50.000 9.73 0.00 0.00 4.26
4387 9012 4.752879 AACGTCGACGCCATGGGG 62.753 66.667 35.92 26.22 44.43 4.96
4427 9085 1.453015 GCACCCATCGCCCATAACA 60.453 57.895 0.00 0.00 0.00 2.41
4428 9086 2.542907 CGCACCCATCGCCCATAAC 61.543 63.158 0.00 0.00 0.00 1.89
4429 9087 2.203139 CGCACCCATCGCCCATAA 60.203 61.111 0.00 0.00 0.00 1.90
4430 9088 4.248842 CCGCACCCATCGCCCATA 62.249 66.667 0.00 0.00 0.00 2.74
4441 9099 3.140225 TTTTGAAACCGCCCGCACC 62.140 57.895 0.00 0.00 0.00 5.01
4442 9100 1.660264 CTTTTGAAACCGCCCGCAC 60.660 57.895 0.00 0.00 0.00 5.34
4443 9101 2.725008 CTTTTGAAACCGCCCGCA 59.275 55.556 0.00 0.00 0.00 5.69
4444 9102 2.733218 GCTTTTGAAACCGCCCGC 60.733 61.111 0.00 0.00 0.00 6.13
4445 9103 2.049526 GGCTTTTGAAACCGCCCG 60.050 61.111 6.23 0.00 36.56 6.13
4446 9104 2.049526 CGGCTTTTGAAACCGCCC 60.050 61.111 10.66 0.00 40.55 6.13
4450 9108 1.335964 GGAAGAGCGGCTTTTGAAACC 60.336 52.381 10.80 1.92 36.83 3.27
4451 9109 1.609072 AGGAAGAGCGGCTTTTGAAAC 59.391 47.619 10.80 0.00 36.83 2.78
4452 9110 1.880027 GAGGAAGAGCGGCTTTTGAAA 59.120 47.619 10.80 0.00 36.83 2.69
4453 9111 1.072331 AGAGGAAGAGCGGCTTTTGAA 59.928 47.619 10.80 0.00 36.83 2.69
4454 9112 0.687354 AGAGGAAGAGCGGCTTTTGA 59.313 50.000 10.80 0.00 36.83 2.69
4455 9113 1.082690 GAGAGGAAGAGCGGCTTTTG 58.917 55.000 10.80 0.00 36.83 2.44
4456 9114 0.035915 GGAGAGGAAGAGCGGCTTTT 60.036 55.000 2.97 4.28 36.83 2.27
4457 9115 0.907230 AGGAGAGGAAGAGCGGCTTT 60.907 55.000 2.97 0.00 36.83 3.51
4458 9116 1.305718 AGGAGAGGAAGAGCGGCTT 60.306 57.895 2.97 0.00 40.25 4.35
4459 9117 1.756561 GAGGAGAGGAAGAGCGGCT 60.757 63.158 0.00 0.00 0.00 5.52
4460 9118 1.398958 ATGAGGAGAGGAAGAGCGGC 61.399 60.000 0.00 0.00 0.00 6.53
4506 9164 3.618780 CTTTGCCTCCTCTGCGGCT 62.619 63.158 0.00 0.00 46.42 5.52
4507 9165 3.130160 CTTTGCCTCCTCTGCGGC 61.130 66.667 0.00 0.00 46.46 6.53
4508 9166 2.437359 CCTTTGCCTCCTCTGCGG 60.437 66.667 0.00 0.00 0.00 5.69
4509 9167 3.130160 GCCTTTGCCTCCTCTGCG 61.130 66.667 0.00 0.00 0.00 5.18
4510 9168 2.034687 TGCCTTTGCCTCCTCTGC 59.965 61.111 0.00 0.00 36.33 4.26
4511 9169 1.378250 CCTGCCTTTGCCTCCTCTG 60.378 63.158 0.00 0.00 36.33 3.35
4512 9170 3.085223 CCTGCCTTTGCCTCCTCT 58.915 61.111 0.00 0.00 36.33 3.69
4556 9214 1.436195 GCTTCACGTCTGTGTTGGCA 61.436 55.000 0.00 0.00 46.49 4.92
4567 9225 3.451178 AGGGATACTATGTTGCTTCACGT 59.549 43.478 0.00 0.00 0.00 4.49
4581 9239 5.254501 GGAGATAGAGTAGGGAAGGGATACT 59.745 48.000 0.00 0.00 32.53 2.12
4604 9262 0.464554 GAGAATGCTTCGGAAGGGGG 60.465 60.000 18.73 0.00 34.02 5.40
4635 9293 2.176045 CGCCCCCTAAAAATTCCAAGT 58.824 47.619 0.00 0.00 0.00 3.16
4641 9299 1.317431 GCCGTCGCCCCCTAAAAATT 61.317 55.000 0.00 0.00 0.00 1.82
4659 9317 1.454847 TTTCACACCCCCACAGTGC 60.455 57.895 0.00 0.00 38.87 4.40
4689 9356 1.167943 CCCCCTCCCCTATCTAGTCA 58.832 60.000 0.00 0.00 0.00 3.41
4698 9365 1.308216 CTCATTCACCCCCTCCCCT 60.308 63.158 0.00 0.00 0.00 4.79
4832 9501 6.590234 AGTTTCTTGTTTCCTTTTGTCACT 57.410 33.333 0.00 0.00 0.00 3.41
4857 9526 7.004086 TGAAATGTTTCCCTCTTATGTCAGTT 58.996 34.615 3.26 0.00 36.36 3.16
4870 9539 6.200854 GTGTCTTTTGTGATGAAATGTTTCCC 59.799 38.462 3.26 0.00 36.36 3.97
4906 9575 4.545208 TTATTGAATCGAGGGTGTCACA 57.455 40.909 5.12 0.00 0.00 3.58
4907 9576 6.018994 GTGTATTATTGAATCGAGGGTGTCAC 60.019 42.308 0.00 0.00 0.00 3.67
4908 9577 6.046593 GTGTATTATTGAATCGAGGGTGTCA 58.953 40.000 0.00 0.00 0.00 3.58
4909 9578 6.281405 AGTGTATTATTGAATCGAGGGTGTC 58.719 40.000 0.00 0.00 0.00 3.67
4910 9579 6.235231 AGTGTATTATTGAATCGAGGGTGT 57.765 37.500 0.00 0.00 0.00 4.16
4911 9580 8.833231 ATTAGTGTATTATTGAATCGAGGGTG 57.167 34.615 0.00 0.00 0.00 4.61
4912 9581 8.647796 TGATTAGTGTATTATTGAATCGAGGGT 58.352 33.333 0.00 0.00 0.00 4.34
4913 9582 9.658799 ATGATTAGTGTATTATTGAATCGAGGG 57.341 33.333 0.00 0.00 0.00 4.30
4920 9589 9.535878 TGCGTGTATGATTAGTGTATTATTGAA 57.464 29.630 0.00 0.00 0.00 2.69
4921 9590 9.535878 TTGCGTGTATGATTAGTGTATTATTGA 57.464 29.630 0.00 0.00 0.00 2.57
4924 9593 8.484799 CGTTTGCGTGTATGATTAGTGTATTAT 58.515 33.333 0.00 0.00 0.00 1.28
4925 9594 7.833539 CGTTTGCGTGTATGATTAGTGTATTA 58.166 34.615 0.00 0.00 0.00 0.98
4926 9595 6.701937 CGTTTGCGTGTATGATTAGTGTATT 58.298 36.000 0.00 0.00 0.00 1.89
4927 9596 6.268797 CGTTTGCGTGTATGATTAGTGTAT 57.731 37.500 0.00 0.00 0.00 2.29
4928 9597 5.689927 CGTTTGCGTGTATGATTAGTGTA 57.310 39.130 0.00 0.00 0.00 2.90
4929 9598 4.577687 CGTTTGCGTGTATGATTAGTGT 57.422 40.909 0.00 0.00 0.00 3.55
4943 9612 1.717113 TCTTGATCGTACACGTTTGCG 59.283 47.619 5.81 5.81 44.93 4.85
4944 9613 3.366724 TGATCTTGATCGTACACGTTTGC 59.633 43.478 1.19 0.00 40.80 3.68
4945 9614 4.031765 CCTGATCTTGATCGTACACGTTTG 59.968 45.833 1.19 0.00 40.80 2.93
4946 9615 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
4947 9616 3.428999 CCCTGATCTTGATCGTACACGTT 60.429 47.826 1.19 0.00 40.80 3.99
4948 9617 2.099263 CCCTGATCTTGATCGTACACGT 59.901 50.000 1.19 0.00 40.80 4.49
4949 9618 2.357952 TCCCTGATCTTGATCGTACACG 59.642 50.000 6.19 0.00 41.45 4.49
4950 9619 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
4951 9620 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
4952 9621 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
4953 9622 3.898482 TGAGTCCCTGATCTTGATCGTA 58.102 45.455 6.19 0.00 0.00 3.43
4954 9623 2.739943 TGAGTCCCTGATCTTGATCGT 58.260 47.619 6.19 0.00 0.00 3.73
4955 9624 3.554544 CCATGAGTCCCTGATCTTGATCG 60.555 52.174 0.00 2.03 0.00 3.69
4956 9625 3.244491 CCCATGAGTCCCTGATCTTGATC 60.244 52.174 0.00 3.82 0.00 2.92
4957 9626 2.709934 CCCATGAGTCCCTGATCTTGAT 59.290 50.000 0.00 0.00 0.00 2.57
4958 9627 2.121948 CCCATGAGTCCCTGATCTTGA 58.878 52.381 0.00 0.00 0.00 3.02
4959 9628 2.121948 TCCCATGAGTCCCTGATCTTG 58.878 52.381 0.00 0.00 0.00 3.02
4960 9629 2.575921 TCCCATGAGTCCCTGATCTT 57.424 50.000 0.00 0.00 0.00 2.40
4961 9630 2.022625 TCTTCCCATGAGTCCCTGATCT 60.023 50.000 0.00 0.00 0.00 2.75
4962 9631 2.402564 TCTTCCCATGAGTCCCTGATC 58.597 52.381 0.00 0.00 0.00 2.92
4963 9632 2.575921 TCTTCCCATGAGTCCCTGAT 57.424 50.000 0.00 0.00 0.00 2.90
4964 9633 2.575921 ATCTTCCCATGAGTCCCTGA 57.424 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.