Multiple sequence alignment - TraesCS3D01G193300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G193300 chr3D 100.000 3308 0 0 1 3308 184102479 184105786 0.000000e+00 6109.0
1 TraesCS3D01G193300 chr3D 100.000 2128 0 0 3589 5716 184106067 184108194 0.000000e+00 3930.0
2 TraesCS3D01G193300 chr3D 97.691 693 16 0 5022 5714 50062567 50063259 0.000000e+00 1192.0
3 TraesCS3D01G193300 chr3B 95.863 2635 65 13 698 3306 262733178 262735794 0.000000e+00 4222.0
4 TraesCS3D01G193300 chr3B 92.834 921 22 4 4123 5021 262736266 262737164 0.000000e+00 1295.0
5 TraesCS3D01G193300 chr3B 92.489 466 21 4 3648 4102 262735817 262736279 0.000000e+00 654.0
6 TraesCS3D01G193300 chr3B 90.909 44 3 1 4168 4211 256469057 256469015 2.220000e-04 58.4
7 TraesCS3D01G193300 chr3A 95.025 1588 63 12 395 1969 234939885 234941469 0.000000e+00 2481.0
8 TraesCS3D01G193300 chr3A 92.125 927 23 6 4123 5021 234944974 234945878 0.000000e+00 1262.0
9 TraesCS3D01G193300 chr3A 98.704 463 6 0 2844 3306 234943965 234944427 0.000000e+00 822.0
10 TraesCS3D01G193300 chr3A 93.090 521 16 3 3589 4102 234944480 234944987 0.000000e+00 745.0
11 TraesCS3D01G193300 chr3A 82.418 182 28 4 106 285 564986572 564986751 7.670000e-34 156.0
12 TraesCS3D01G193300 chr5D 98.273 695 12 0 5022 5716 90257698 90257004 0.000000e+00 1218.0
13 TraesCS3D01G193300 chr2D 98.273 695 11 1 5022 5716 11280183 11280876 0.000000e+00 1216.0
14 TraesCS3D01G193300 chr7D 97.845 696 15 0 5021 5716 394252316 394251621 0.000000e+00 1203.0
15 TraesCS3D01G193300 chr7D 97.835 693 15 0 5022 5714 616137189 616137881 0.000000e+00 1197.0
16 TraesCS3D01G193300 chr7D 97.561 697 17 0 5018 5714 65777263 65777959 0.000000e+00 1194.0
17 TraesCS3D01G193300 chr7D 97.554 695 15 1 5022 5716 136954974 136954282 0.000000e+00 1188.0
18 TraesCS3D01G193300 chr4D 97.980 693 13 1 5022 5714 67308476 67309167 0.000000e+00 1201.0
19 TraesCS3D01G193300 chr4D 97.547 693 17 0 5022 5714 349581882 349581190 0.000000e+00 1186.0
20 TraesCS3D01G193300 chr6A 78.547 289 53 7 355 640 49741866 49742148 1.270000e-41 182.0
21 TraesCS3D01G193300 chr1B 80.909 220 38 4 107 323 533182072 533182290 2.740000e-38 171.0
22 TraesCS3D01G193300 chr1B 90.909 44 3 1 4168 4211 63198098 63198056 2.220000e-04 58.4
23 TraesCS3D01G193300 chr1D 79.913 229 36 9 110 334 401923844 401923622 5.930000e-35 159.0
24 TraesCS3D01G193300 chr1D 80.000 230 35 10 110 334 402009060 402008837 5.930000e-35 159.0
25 TraesCS3D01G193300 chr1D 80.000 230 35 10 110 334 402110623 402110400 5.930000e-35 159.0
26 TraesCS3D01G193300 chr1A 76.949 295 52 11 355 643 530525467 530525183 2.760000e-33 154.0
27 TraesCS3D01G193300 chr5A 81.522 184 30 4 107 288 1304176 1304357 1.280000e-31 148.0
28 TraesCS3D01G193300 chr5A 81.183 186 31 4 107 290 488946815 488946998 4.620000e-31 147.0
29 TraesCS3D01G193300 chr2A 81.081 185 33 2 107 290 773776868 773777051 4.620000e-31 147.0
30 TraesCS3D01G193300 chr6B 78.475 223 42 6 104 323 470866982 470867201 2.150000e-29 141.0
31 TraesCS3D01G193300 chr6B 90.909 44 3 1 4168 4211 125529796 125529838 2.220000e-04 58.4
32 TraesCS3D01G193300 chr4B 97.297 37 1 0 4175 4211 117370790 117370754 4.780000e-06 63.9
33 TraesCS3D01G193300 chr5B 97.222 36 1 0 4175 4210 9839007 9838972 1.720000e-05 62.1
34 TraesCS3D01G193300 chr5B 91.111 45 3 1 4168 4212 288651276 288651233 6.180000e-05 60.2
35 TraesCS3D01G193300 chr4A 81.013 79 13 2 4133 4210 602629770 602629693 1.720000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G193300 chr3D 184102479 184108194 5715 False 5019.5 6109 100.000000 1 5716 2 chr3D.!!$F2 5715
1 TraesCS3D01G193300 chr3D 50062567 50063259 692 False 1192.0 1192 97.691000 5022 5714 1 chr3D.!!$F1 692
2 TraesCS3D01G193300 chr3B 262733178 262737164 3986 False 2057.0 4222 93.728667 698 5021 3 chr3B.!!$F1 4323
3 TraesCS3D01G193300 chr3A 234939885 234945878 5993 False 1327.5 2481 94.736000 395 5021 4 chr3A.!!$F2 4626
4 TraesCS3D01G193300 chr5D 90257004 90257698 694 True 1218.0 1218 98.273000 5022 5716 1 chr5D.!!$R1 694
5 TraesCS3D01G193300 chr2D 11280183 11280876 693 False 1216.0 1216 98.273000 5022 5716 1 chr2D.!!$F1 694
6 TraesCS3D01G193300 chr7D 394251621 394252316 695 True 1203.0 1203 97.845000 5021 5716 1 chr7D.!!$R2 695
7 TraesCS3D01G193300 chr7D 616137189 616137881 692 False 1197.0 1197 97.835000 5022 5714 1 chr7D.!!$F2 692
8 TraesCS3D01G193300 chr7D 65777263 65777959 696 False 1194.0 1194 97.561000 5018 5714 1 chr7D.!!$F1 696
9 TraesCS3D01G193300 chr7D 136954282 136954974 692 True 1188.0 1188 97.554000 5022 5716 1 chr7D.!!$R1 694
10 TraesCS3D01G193300 chr4D 67308476 67309167 691 False 1201.0 1201 97.980000 5022 5714 1 chr4D.!!$F1 692
11 TraesCS3D01G193300 chr4D 349581190 349581882 692 True 1186.0 1186 97.547000 5022 5714 1 chr4D.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.031585 CGAGACCCGTGTCAAACAGA 59.968 55.000 0.0 0.0 44.33 3.41 F
163 164 0.036306 CATCCCATACCCTTACCCGC 59.964 60.000 0.0 0.0 0.00 6.13 F
261 262 0.036590 GTAAAAGGGTGCCGTGGGTA 59.963 55.000 0.0 0.0 0.00 3.69 F
263 264 0.106116 AAAAGGGTGCCGTGGGTAAA 60.106 50.000 0.0 0.0 0.00 2.01 F
265 266 0.106116 AAGGGTGCCGTGGGTAAAAA 60.106 50.000 0.0 0.0 0.00 1.94 F
266 267 0.113580 AGGGTGCCGTGGGTAAAAAT 59.886 50.000 0.0 0.0 0.00 1.82 F
301 302 0.721154 GCATCAATCGAAGCGACACA 59.279 50.000 0.0 0.0 39.18 3.72 F
520 521 0.833287 TACTCGTACCCGCTCTACCT 59.167 55.000 0.0 0.0 0.00 3.08 F
1401 1433 1.074951 GACCCAAGTGGACCCCAAG 59.925 63.158 0.0 0.0 34.18 3.61 F
2463 2517 1.275573 GCCTGGGAGTTTCTCTTACGT 59.724 52.381 0.0 0.0 0.00 3.57 F
3157 5256 0.106519 AAGGTGGTCATAGCCATGCC 60.107 55.000 0.0 0.0 41.08 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2031 0.244450 CCAACGCACATGGCTCAAAT 59.756 50.000 0.00 0.0 41.67 2.32 R
1983 2035 0.878416 TAAACCAACGCACATGGCTC 59.122 50.000 0.00 0.0 41.89 4.70 R
2020 2072 3.937814 TCAGTATCAAACAGCCGTGAAT 58.062 40.909 0.00 0.0 0.00 2.57 R
2046 2098 5.033507 CACTAATCTCGTCATGTCTCTGTG 58.966 45.833 0.00 0.0 0.00 3.66 R
2476 2530 6.713762 TGCAAATAGGCAATAGCATAAAGT 57.286 33.333 0.00 0.0 40.78 2.66 R
2673 3417 0.455410 TTGCAGGCACAGACAACAAC 59.545 50.000 0.00 0.0 0.00 3.32 R
2674 3418 1.180907 TTTGCAGGCACAGACAACAA 58.819 45.000 0.00 0.0 0.00 2.83 R
2751 3495 3.129462 GGAACTATCCAAGGAGCAAAAGC 59.871 47.826 0.00 0.0 45.79 3.51 R
2904 5003 6.117975 AGAAATCCTTGCCAAATGACAAAT 57.882 33.333 0.00 0.0 0.00 2.32 R
4146 6262 0.178767 CTCTCATTCGTGGCCATCCA 59.821 55.000 9.72 0.0 40.85 3.41 R
5431 7575 0.179121 CGGACCAAATCGTCGGATCA 60.179 55.000 0.00 0.0 35.67 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.179925 GCATGACAGGGAAGCATCA 57.820 52.632 0.00 0.00 0.00 3.07
19 20 1.022735 GCATGACAGGGAAGCATCAG 58.977 55.000 0.00 0.00 0.00 2.90
20 21 1.681166 GCATGACAGGGAAGCATCAGT 60.681 52.381 0.00 0.00 0.00 3.41
21 22 2.014857 CATGACAGGGAAGCATCAGTG 58.985 52.381 0.00 0.00 0.00 3.66
30 31 2.887568 GCATCAGTGCGAGACCCG 60.888 66.667 0.00 0.00 42.28 5.28
31 32 2.573869 CATCAGTGCGAGACCCGT 59.426 61.111 0.00 0.00 41.15 5.28
32 33 1.807165 CATCAGTGCGAGACCCGTG 60.807 63.158 0.00 0.00 41.15 4.94
33 34 2.276116 ATCAGTGCGAGACCCGTGT 61.276 57.895 0.00 0.00 41.15 4.49
34 35 2.214181 ATCAGTGCGAGACCCGTGTC 62.214 60.000 0.00 0.00 42.09 3.67
35 36 2.910479 AGTGCGAGACCCGTGTCA 60.910 61.111 0.00 0.00 44.33 3.58
36 37 2.028484 GTGCGAGACCCGTGTCAA 59.972 61.111 0.00 0.00 44.33 3.18
37 38 1.593209 GTGCGAGACCCGTGTCAAA 60.593 57.895 0.00 0.00 44.33 2.69
38 39 1.593209 TGCGAGACCCGTGTCAAAC 60.593 57.895 0.00 0.00 44.33 2.93
39 40 1.593209 GCGAGACCCGTGTCAAACA 60.593 57.895 0.00 0.00 44.33 2.83
40 41 1.557443 GCGAGACCCGTGTCAAACAG 61.557 60.000 0.00 0.00 44.33 3.16
41 42 0.031585 CGAGACCCGTGTCAAACAGA 59.968 55.000 0.00 0.00 44.33 3.41
49 50 3.625232 GTCAAACAGACAGCGCGA 58.375 55.556 12.10 0.00 46.77 5.87
50 51 1.931551 GTCAAACAGACAGCGCGAA 59.068 52.632 12.10 0.00 46.77 4.70
51 52 0.383124 GTCAAACAGACAGCGCGAAC 60.383 55.000 12.10 0.00 46.77 3.95
52 53 1.437089 CAAACAGACAGCGCGAACG 60.437 57.895 12.10 0.00 44.07 3.95
53 54 2.594962 AAACAGACAGCGCGAACGG 61.595 57.895 12.10 0.00 40.57 4.44
65 66 4.373116 GAACGGCACTCCCAGCGA 62.373 66.667 0.00 0.00 0.00 4.93
66 67 4.379243 AACGGCACTCCCAGCGAG 62.379 66.667 0.00 0.00 44.95 5.03
69 70 3.474570 GGCACTCCCAGCGAGGAT 61.475 66.667 0.00 0.00 43.57 3.24
70 71 2.202987 GCACTCCCAGCGAGGATG 60.203 66.667 0.00 2.43 43.57 3.51
71 72 2.202987 CACTCCCAGCGAGGATGC 60.203 66.667 0.00 0.00 43.57 3.91
72 73 3.474570 ACTCCCAGCGAGGATGCC 61.475 66.667 0.00 0.00 43.57 4.40
73 74 4.247380 CTCCCAGCGAGGATGCCC 62.247 72.222 0.00 0.00 41.22 5.36
76 77 4.113815 CCAGCGAGGATGCCCCAA 62.114 66.667 0.00 0.00 41.22 4.12
77 78 2.515523 CAGCGAGGATGCCCCAAG 60.516 66.667 0.00 0.00 37.41 3.61
78 79 3.801997 AGCGAGGATGCCCCAAGG 61.802 66.667 0.00 0.00 37.41 3.61
93 94 4.674281 CCCAAGGGACAGATACTCTAAC 57.326 50.000 0.00 0.00 37.50 2.34
94 95 4.030913 CCCAAGGGACAGATACTCTAACA 58.969 47.826 0.00 0.00 37.50 2.41
95 96 4.656112 CCCAAGGGACAGATACTCTAACAT 59.344 45.833 0.00 0.00 37.50 2.71
96 97 5.221541 CCCAAGGGACAGATACTCTAACATC 60.222 48.000 0.00 0.00 37.50 3.06
97 98 5.221541 CCAAGGGACAGATACTCTAACATCC 60.222 48.000 0.00 0.00 0.00 3.51
98 99 5.411103 AGGGACAGATACTCTAACATCCT 57.589 43.478 0.00 0.00 0.00 3.24
99 100 5.782925 AGGGACAGATACTCTAACATCCTT 58.217 41.667 0.00 0.00 0.00 3.36
100 101 6.206042 AGGGACAGATACTCTAACATCCTTT 58.794 40.000 0.00 0.00 0.00 3.11
101 102 7.363031 AGGGACAGATACTCTAACATCCTTTA 58.637 38.462 0.00 0.00 0.00 1.85
102 103 8.013667 AGGGACAGATACTCTAACATCCTTTAT 58.986 37.037 0.00 0.00 0.00 1.40
103 104 9.310449 GGGACAGATACTCTAACATCCTTTATA 57.690 37.037 0.00 0.00 0.00 0.98
118 119 6.374417 TCCTTTATAGATAAGGATGGCACC 57.626 41.667 0.93 0.00 44.72 5.01
119 120 5.250774 TCCTTTATAGATAAGGATGGCACCC 59.749 44.000 0.00 0.00 44.72 4.61
120 121 4.819105 TTATAGATAAGGATGGCACCCG 57.181 45.455 0.00 0.00 0.00 5.28
121 122 0.685097 TAGATAAGGATGGCACCCGC 59.315 55.000 0.00 0.00 37.44 6.13
134 135 2.187685 CCCGCCGGGTTTAGGTAC 59.812 66.667 15.86 0.00 38.25 3.34
135 136 2.202783 CCGCCGGGTTTAGGTACG 60.203 66.667 2.18 0.00 0.00 3.67
137 138 2.187685 GCCGGGTTTAGGTACGGG 59.812 66.667 2.18 0.00 46.04 5.28
138 139 2.659063 GCCGGGTTTAGGTACGGGT 61.659 63.158 2.18 0.00 46.04 5.28
139 140 1.218854 CCGGGTTTAGGTACGGGTG 59.781 63.158 0.00 0.00 42.48 4.61
140 141 1.218854 CGGGTTTAGGTACGGGTGG 59.781 63.158 0.00 0.00 0.00 4.61
141 142 1.257055 CGGGTTTAGGTACGGGTGGA 61.257 60.000 0.00 0.00 0.00 4.02
142 143 0.538584 GGGTTTAGGTACGGGTGGAG 59.461 60.000 0.00 0.00 0.00 3.86
143 144 0.107993 GGTTTAGGTACGGGTGGAGC 60.108 60.000 0.00 0.00 0.00 4.70
144 145 0.107993 GTTTAGGTACGGGTGGAGCC 60.108 60.000 0.00 0.00 0.00 4.70
145 146 0.544833 TTTAGGTACGGGTGGAGCCA 60.545 55.000 0.00 0.00 39.65 4.75
146 147 0.325860 TTAGGTACGGGTGGAGCCAT 60.326 55.000 0.00 0.00 39.65 4.40
147 148 0.757935 TAGGTACGGGTGGAGCCATC 60.758 60.000 0.00 0.00 39.65 3.51
148 149 2.504519 GTACGGGTGGAGCCATCC 59.495 66.667 8.84 8.84 46.87 3.51
149 150 2.766651 TACGGGTGGAGCCATCCC 60.767 66.667 13.09 13.54 44.08 3.85
150 151 3.627332 TACGGGTGGAGCCATCCCA 62.627 63.158 13.09 0.00 44.08 4.37
151 152 2.907482 TACGGGTGGAGCCATCCCAT 62.907 60.000 13.09 7.04 44.08 4.00
152 153 2.146724 CGGGTGGAGCCATCCCATA 61.147 63.158 13.09 0.00 44.08 2.74
153 154 1.456287 GGGTGGAGCCATCCCATAC 59.544 63.158 7.63 0.00 46.04 2.39
154 155 1.456287 GGTGGAGCCATCCCATACC 59.544 63.158 0.00 0.00 46.04 2.73
155 156 1.456287 GTGGAGCCATCCCATACCC 59.544 63.158 0.00 0.00 46.04 3.69
156 157 1.062488 GTGGAGCCATCCCATACCCT 61.062 60.000 0.00 0.00 46.04 4.34
157 158 0.328450 TGGAGCCATCCCATACCCTT 60.328 55.000 0.00 0.00 46.04 3.95
158 159 1.060954 TGGAGCCATCCCATACCCTTA 60.061 52.381 0.00 0.00 46.04 2.69
159 160 1.351350 GGAGCCATCCCATACCCTTAC 59.649 57.143 0.00 0.00 40.03 2.34
160 161 1.351350 GAGCCATCCCATACCCTTACC 59.649 57.143 0.00 0.00 0.00 2.85
161 162 0.404426 GCCATCCCATACCCTTACCC 59.596 60.000 0.00 0.00 0.00 3.69
162 163 0.690762 CCATCCCATACCCTTACCCG 59.309 60.000 0.00 0.00 0.00 5.28
163 164 0.036306 CATCCCATACCCTTACCCGC 59.964 60.000 0.00 0.00 0.00 6.13
164 165 1.131928 ATCCCATACCCTTACCCGCC 61.132 60.000 0.00 0.00 0.00 6.13
165 166 2.073716 CCCATACCCTTACCCGCCA 61.074 63.158 0.00 0.00 0.00 5.69
166 167 1.147600 CCATACCCTTACCCGCCAC 59.852 63.158 0.00 0.00 0.00 5.01
167 168 1.342672 CCATACCCTTACCCGCCACT 61.343 60.000 0.00 0.00 0.00 4.00
168 169 0.544697 CATACCCTTACCCGCCACTT 59.455 55.000 0.00 0.00 0.00 3.16
169 170 1.764134 CATACCCTTACCCGCCACTTA 59.236 52.381 0.00 0.00 0.00 2.24
170 171 2.179377 TACCCTTACCCGCCACTTAT 57.821 50.000 0.00 0.00 0.00 1.73
171 172 0.544697 ACCCTTACCCGCCACTTATG 59.455 55.000 0.00 0.00 0.00 1.90
172 173 0.834612 CCCTTACCCGCCACTTATGA 59.165 55.000 0.00 0.00 0.00 2.15
173 174 1.202651 CCCTTACCCGCCACTTATGAG 60.203 57.143 0.00 0.00 0.00 2.90
174 175 1.485066 CCTTACCCGCCACTTATGAGT 59.515 52.381 0.00 0.00 36.25 3.41
175 176 2.093128 CCTTACCCGCCACTTATGAGTT 60.093 50.000 0.00 0.00 32.54 3.01
176 177 3.606687 CTTACCCGCCACTTATGAGTTT 58.393 45.455 0.00 0.00 32.54 2.66
177 178 4.383335 CCTTACCCGCCACTTATGAGTTTA 60.383 45.833 0.00 0.00 32.54 2.01
178 179 2.981898 ACCCGCCACTTATGAGTTTAC 58.018 47.619 0.00 0.00 32.54 2.01
179 180 2.285977 CCCGCCACTTATGAGTTTACC 58.714 52.381 0.00 0.00 32.54 2.85
180 181 2.285977 CCGCCACTTATGAGTTTACCC 58.714 52.381 0.00 0.00 32.54 3.69
181 182 2.355310 CCGCCACTTATGAGTTTACCCA 60.355 50.000 0.00 0.00 32.54 4.51
182 183 3.541632 CGCCACTTATGAGTTTACCCAT 58.458 45.455 0.00 0.00 32.54 4.00
183 184 3.560068 CGCCACTTATGAGTTTACCCATC 59.440 47.826 0.00 0.00 32.54 3.51
184 185 4.523083 GCCACTTATGAGTTTACCCATCA 58.477 43.478 0.00 0.00 32.54 3.07
185 186 4.335594 GCCACTTATGAGTTTACCCATCAC 59.664 45.833 0.00 0.00 32.54 3.06
186 187 4.881850 CCACTTATGAGTTTACCCATCACC 59.118 45.833 0.00 0.00 32.54 4.02
187 188 5.339200 CCACTTATGAGTTTACCCATCACCT 60.339 44.000 0.00 0.00 32.54 4.00
188 189 6.126883 CCACTTATGAGTTTACCCATCACCTA 60.127 42.308 0.00 0.00 32.54 3.08
189 190 7.420214 CCACTTATGAGTTTACCCATCACCTAT 60.420 40.741 0.00 0.00 32.54 2.57
190 191 8.647796 CACTTATGAGTTTACCCATCACCTATA 58.352 37.037 0.00 0.00 32.54 1.31
191 192 8.648693 ACTTATGAGTTTACCCATCACCTATAC 58.351 37.037 0.00 0.00 29.87 1.47
192 193 5.881923 TGAGTTTACCCATCACCTATACC 57.118 43.478 0.00 0.00 0.00 2.73
193 194 4.657039 TGAGTTTACCCATCACCTATACCC 59.343 45.833 0.00 0.00 0.00 3.69
194 195 4.637600 AGTTTACCCATCACCTATACCCA 58.362 43.478 0.00 0.00 0.00 4.51
195 196 5.232347 AGTTTACCCATCACCTATACCCAT 58.768 41.667 0.00 0.00 0.00 4.00
196 197 6.395598 AGTTTACCCATCACCTATACCCATA 58.604 40.000 0.00 0.00 0.00 2.74
197 198 6.271624 AGTTTACCCATCACCTATACCCATAC 59.728 42.308 0.00 0.00 0.00 2.39
198 199 3.527937 ACCCATCACCTATACCCATACC 58.472 50.000 0.00 0.00 0.00 2.73
199 200 2.844348 CCCATCACCTATACCCATACCC 59.156 54.545 0.00 0.00 0.00 3.69
200 201 2.500098 CCATCACCTATACCCATACCCG 59.500 54.545 0.00 0.00 0.00 5.28
201 202 3.170717 CATCACCTATACCCATACCCGT 58.829 50.000 0.00 0.00 0.00 5.28
202 203 2.880443 TCACCTATACCCATACCCGTC 58.120 52.381 0.00 0.00 0.00 4.79
203 204 2.177451 TCACCTATACCCATACCCGTCA 59.823 50.000 0.00 0.00 0.00 4.35
204 205 2.967201 CACCTATACCCATACCCGTCAA 59.033 50.000 0.00 0.00 0.00 3.18
205 206 3.581332 CACCTATACCCATACCCGTCAAT 59.419 47.826 0.00 0.00 0.00 2.57
206 207 3.581332 ACCTATACCCATACCCGTCAATG 59.419 47.826 0.00 0.00 0.00 2.82
207 208 3.835978 CCTATACCCATACCCGTCAATGA 59.164 47.826 0.00 0.00 0.00 2.57
208 209 4.081642 CCTATACCCATACCCGTCAATGAG 60.082 50.000 0.00 0.00 0.00 2.90
209 210 1.580059 ACCCATACCCGTCAATGAGT 58.420 50.000 0.00 0.00 0.00 3.41
210 211 2.754465 ACCCATACCCGTCAATGAGTA 58.246 47.619 0.00 0.00 0.00 2.59
211 212 3.314693 ACCCATACCCGTCAATGAGTAT 58.685 45.455 0.00 0.00 0.00 2.12
212 213 4.485875 ACCCATACCCGTCAATGAGTATA 58.514 43.478 0.00 0.00 0.00 1.47
213 214 4.903049 ACCCATACCCGTCAATGAGTATAA 59.097 41.667 0.00 0.00 0.00 0.98
214 215 5.367352 ACCCATACCCGTCAATGAGTATAAA 59.633 40.000 0.00 0.00 0.00 1.40
215 216 6.126710 ACCCATACCCGTCAATGAGTATAAAA 60.127 38.462 0.00 0.00 0.00 1.52
216 217 6.940298 CCCATACCCGTCAATGAGTATAAAAT 59.060 38.462 0.00 0.00 0.00 1.82
217 218 7.447238 CCCATACCCGTCAATGAGTATAAAATT 59.553 37.037 0.00 0.00 0.00 1.82
218 219 8.846211 CCATACCCGTCAATGAGTATAAAATTT 58.154 33.333 0.00 0.00 0.00 1.82
219 220 9.878599 CATACCCGTCAATGAGTATAAAATTTC 57.121 33.333 0.00 0.00 0.00 2.17
220 221 7.329588 ACCCGTCAATGAGTATAAAATTTCC 57.670 36.000 0.00 0.00 0.00 3.13
221 222 6.887545 ACCCGTCAATGAGTATAAAATTTCCA 59.112 34.615 0.00 0.00 0.00 3.53
222 223 7.148137 ACCCGTCAATGAGTATAAAATTTCCAC 60.148 37.037 0.00 0.00 0.00 4.02
223 224 7.148154 CCCGTCAATGAGTATAAAATTTCCACA 60.148 37.037 0.00 0.00 0.00 4.17
224 225 8.405531 CCGTCAATGAGTATAAAATTTCCACAT 58.594 33.333 0.00 0.00 0.00 3.21
230 231 8.138365 TGAGTATAAAATTTCCACATACTCGC 57.862 34.615 21.82 11.42 45.70 5.03
231 232 7.225931 TGAGTATAAAATTTCCACATACTCGCC 59.774 37.037 21.82 11.02 45.70 5.54
232 233 7.051623 AGTATAAAATTTCCACATACTCGCCA 58.948 34.615 0.00 0.00 28.62 5.69
233 234 4.434713 AAAATTTCCACATACTCGCCAC 57.565 40.909 0.00 0.00 0.00 5.01
234 235 2.038387 ATTTCCACATACTCGCCACC 57.962 50.000 0.00 0.00 0.00 4.61
235 236 0.981183 TTTCCACATACTCGCCACCT 59.019 50.000 0.00 0.00 0.00 4.00
236 237 0.249120 TTCCACATACTCGCCACCTG 59.751 55.000 0.00 0.00 0.00 4.00
237 238 0.613572 TCCACATACTCGCCACCTGA 60.614 55.000 0.00 0.00 0.00 3.86
238 239 0.465705 CCACATACTCGCCACCTGAT 59.534 55.000 0.00 0.00 0.00 2.90
239 240 1.686587 CCACATACTCGCCACCTGATA 59.313 52.381 0.00 0.00 0.00 2.15
240 241 2.288457 CCACATACTCGCCACCTGATAG 60.288 54.545 0.00 0.00 0.00 2.08
241 242 1.964223 ACATACTCGCCACCTGATAGG 59.036 52.381 0.00 0.00 42.49 2.57
242 243 1.273606 CATACTCGCCACCTGATAGGG 59.726 57.143 0.00 0.00 40.58 3.53
243 244 0.260816 TACTCGCCACCTGATAGGGT 59.739 55.000 0.00 0.00 40.58 4.34
244 245 0.260816 ACTCGCCACCTGATAGGGTA 59.739 55.000 0.00 0.00 40.58 3.69
245 246 1.342674 ACTCGCCACCTGATAGGGTAA 60.343 52.381 0.00 0.00 40.58 2.85
246 247 1.760613 CTCGCCACCTGATAGGGTAAA 59.239 52.381 0.00 0.00 40.58 2.01
247 248 2.169769 CTCGCCACCTGATAGGGTAAAA 59.830 50.000 0.00 0.00 40.58 1.52
248 249 2.169769 TCGCCACCTGATAGGGTAAAAG 59.830 50.000 0.00 0.00 40.58 2.27
249 250 2.745152 CGCCACCTGATAGGGTAAAAGG 60.745 54.545 0.00 0.00 40.58 3.11
250 251 2.422945 GCCACCTGATAGGGTAAAAGGG 60.423 54.545 0.00 0.00 40.58 3.95
251 252 2.850568 CCACCTGATAGGGTAAAAGGGT 59.149 50.000 0.00 0.00 40.58 4.34
252 253 3.371595 CCACCTGATAGGGTAAAAGGGTG 60.372 52.174 0.00 0.00 40.58 4.61
253 254 2.241430 ACCTGATAGGGTAAAAGGGTGC 59.759 50.000 0.00 0.00 40.58 5.01
254 255 2.422945 CCTGATAGGGTAAAAGGGTGCC 60.423 54.545 0.00 0.00 0.00 5.01
255 256 1.210967 TGATAGGGTAAAAGGGTGCCG 59.789 52.381 0.00 0.00 0.00 5.69
256 257 1.211212 GATAGGGTAAAAGGGTGCCGT 59.789 52.381 0.00 0.00 0.00 5.68
257 258 0.325602 TAGGGTAAAAGGGTGCCGTG 59.674 55.000 0.00 0.00 0.00 4.94
258 259 1.974875 GGGTAAAAGGGTGCCGTGG 60.975 63.158 0.00 0.00 0.00 4.94
259 260 1.974875 GGTAAAAGGGTGCCGTGGG 60.975 63.158 0.00 0.00 0.00 4.61
260 261 1.228337 GTAAAAGGGTGCCGTGGGT 60.228 57.895 0.00 0.00 0.00 4.51
261 262 0.036590 GTAAAAGGGTGCCGTGGGTA 59.963 55.000 0.00 0.00 0.00 3.69
262 263 0.769873 TAAAAGGGTGCCGTGGGTAA 59.230 50.000 0.00 0.00 0.00 2.85
263 264 0.106116 AAAAGGGTGCCGTGGGTAAA 60.106 50.000 0.00 0.00 0.00 2.01
264 265 0.106116 AAAGGGTGCCGTGGGTAAAA 60.106 50.000 0.00 0.00 0.00 1.52
265 266 0.106116 AAGGGTGCCGTGGGTAAAAA 60.106 50.000 0.00 0.00 0.00 1.94
266 267 0.113580 AGGGTGCCGTGGGTAAAAAT 59.886 50.000 0.00 0.00 0.00 1.82
267 268 1.355043 AGGGTGCCGTGGGTAAAAATA 59.645 47.619 0.00 0.00 0.00 1.40
268 269 1.473677 GGGTGCCGTGGGTAAAAATAC 59.526 52.381 0.00 0.00 0.00 1.89
269 270 1.473677 GGTGCCGTGGGTAAAAATACC 59.526 52.381 0.00 0.00 39.37 2.73
282 283 7.856492 GGTAAAAATACCCACGTTTACAAAG 57.144 36.000 7.28 0.00 37.91 2.77
283 284 6.363088 GGTAAAAATACCCACGTTTACAAAGC 59.637 38.462 7.28 0.00 37.91 3.51
284 285 5.517322 AAAATACCCACGTTTACAAAGCA 57.483 34.783 0.00 0.00 0.00 3.91
285 286 5.715434 AAATACCCACGTTTACAAAGCAT 57.285 34.783 0.00 0.00 0.00 3.79
286 287 4.957759 ATACCCACGTTTACAAAGCATC 57.042 40.909 0.00 0.00 0.00 3.91
287 288 2.577700 ACCCACGTTTACAAAGCATCA 58.422 42.857 0.00 0.00 0.00 3.07
288 289 2.952978 ACCCACGTTTACAAAGCATCAA 59.047 40.909 0.00 0.00 0.00 2.57
289 290 3.572255 ACCCACGTTTACAAAGCATCAAT 59.428 39.130 0.00 0.00 0.00 2.57
290 291 4.165779 CCCACGTTTACAAAGCATCAATC 58.834 43.478 0.00 0.00 0.00 2.67
291 292 3.845775 CCACGTTTACAAAGCATCAATCG 59.154 43.478 0.00 0.00 0.00 3.34
292 293 4.377943 CCACGTTTACAAAGCATCAATCGA 60.378 41.667 0.00 0.00 0.00 3.59
293 294 5.143660 CACGTTTACAAAGCATCAATCGAA 58.856 37.500 0.00 0.00 0.00 3.71
294 295 5.281376 CACGTTTACAAAGCATCAATCGAAG 59.719 40.000 0.00 0.00 0.00 3.79
295 296 4.260656 CGTTTACAAAGCATCAATCGAAGC 59.739 41.667 0.00 0.00 36.08 3.86
296 297 2.532531 ACAAAGCATCAATCGAAGCG 57.467 45.000 0.00 0.00 40.78 4.68
297 298 2.076100 ACAAAGCATCAATCGAAGCGA 58.924 42.857 0.00 0.00 40.78 4.93
298 299 2.159653 ACAAAGCATCAATCGAAGCGAC 60.160 45.455 0.00 0.00 40.78 5.19
299 300 1.725641 AAGCATCAATCGAAGCGACA 58.274 45.000 0.00 0.00 40.78 4.35
300 301 1.002366 AGCATCAATCGAAGCGACAC 58.998 50.000 0.00 0.00 40.78 3.67
301 302 0.721154 GCATCAATCGAAGCGACACA 59.279 50.000 0.00 0.00 39.18 3.72
302 303 1.527793 GCATCAATCGAAGCGACACAC 60.528 52.381 0.00 0.00 39.18 3.82
303 304 0.992072 ATCAATCGAAGCGACACACG 59.008 50.000 0.00 0.00 39.18 4.49
304 305 1.006825 TCAATCGAAGCGACACACGG 61.007 55.000 0.00 0.00 39.18 4.94
315 316 2.904011 GACACACGGTCACAAAACAA 57.096 45.000 0.00 0.00 46.19 2.83
316 317 3.204597 GACACACGGTCACAAAACAAA 57.795 42.857 0.00 0.00 46.19 2.83
317 318 3.566523 GACACACGGTCACAAAACAAAA 58.433 40.909 0.00 0.00 46.19 2.44
318 319 4.170256 GACACACGGTCACAAAACAAAAT 58.830 39.130 0.00 0.00 46.19 1.82
319 320 5.312120 ACACACGGTCACAAAACAAAATA 57.688 34.783 0.00 0.00 0.00 1.40
320 321 5.897050 ACACACGGTCACAAAACAAAATAT 58.103 33.333 0.00 0.00 0.00 1.28
321 322 7.028926 ACACACGGTCACAAAACAAAATATA 57.971 32.000 0.00 0.00 0.00 0.86
322 323 7.481642 ACACACGGTCACAAAACAAAATATAA 58.518 30.769 0.00 0.00 0.00 0.98
323 324 7.432838 ACACACGGTCACAAAACAAAATATAAC 59.567 33.333 0.00 0.00 0.00 1.89
324 325 7.432545 CACACGGTCACAAAACAAAATATAACA 59.567 33.333 0.00 0.00 0.00 2.41
325 326 7.432838 ACACGGTCACAAAACAAAATATAACAC 59.567 33.333 0.00 0.00 0.00 3.32
326 327 7.432545 CACGGTCACAAAACAAAATATAACACA 59.567 33.333 0.00 0.00 0.00 3.72
327 328 8.138712 ACGGTCACAAAACAAAATATAACACAT 58.861 29.630 0.00 0.00 0.00 3.21
328 329 8.635124 CGGTCACAAAACAAAATATAACACATC 58.365 33.333 0.00 0.00 0.00 3.06
329 330 8.635124 GGTCACAAAACAAAATATAACACATCG 58.365 33.333 0.00 0.00 0.00 3.84
330 331 9.176181 GTCACAAAACAAAATATAACACATCGT 57.824 29.630 0.00 0.00 0.00 3.73
384 385 9.744468 AAACAACACTTCCTCATTAATAACAAC 57.256 29.630 0.00 0.00 0.00 3.32
385 386 8.458573 ACAACACTTCCTCATTAATAACAACA 57.541 30.769 0.00 0.00 0.00 3.33
386 387 8.349983 ACAACACTTCCTCATTAATAACAACAC 58.650 33.333 0.00 0.00 0.00 3.32
387 388 8.349245 CAACACTTCCTCATTAATAACAACACA 58.651 33.333 0.00 0.00 0.00 3.72
388 389 8.458573 ACACTTCCTCATTAATAACAACACAA 57.541 30.769 0.00 0.00 0.00 3.33
389 390 8.908903 ACACTTCCTCATTAATAACAACACAAA 58.091 29.630 0.00 0.00 0.00 2.83
390 391 9.398170 CACTTCCTCATTAATAACAACACAAAG 57.602 33.333 0.00 0.00 0.00 2.77
391 392 9.131791 ACTTCCTCATTAATAACAACACAAAGT 57.868 29.630 0.00 0.00 0.00 2.66
392 393 9.612620 CTTCCTCATTAATAACAACACAAAGTC 57.387 33.333 0.00 0.00 0.00 3.01
393 394 8.684386 TCCTCATTAATAACAACACAAAGTCA 57.316 30.769 0.00 0.00 0.00 3.41
394 395 9.295825 TCCTCATTAATAACAACACAAAGTCAT 57.704 29.630 0.00 0.00 0.00 3.06
432 433 5.760253 ACAAACTCACATGAAGTTGTAGAGG 59.240 40.000 15.60 7.24 32.57 3.69
446 447 5.178809 AGTTGTAGAGGTAATTTGTTCGCAC 59.821 40.000 0.00 0.00 0.00 5.34
449 450 6.097356 TGTAGAGGTAATTTGTTCGCACTAG 58.903 40.000 0.00 0.00 0.00 2.57
484 485 3.703052 CGGGTATATGGGTATGAGGGTAC 59.297 52.174 0.00 0.00 0.00 3.34
497 498 8.574737 GGGTATGAGGGTACGTATTATATGATC 58.425 40.741 0.00 0.00 0.00 2.92
498 499 8.574737 GGTATGAGGGTACGTATTATATGATCC 58.425 40.741 0.00 0.00 0.00 3.36
503 504 8.474710 AGGGTACGTATTATATGATCCCATAC 57.525 38.462 20.58 5.73 38.02 2.39
509 510 8.834465 ACGTATTATATGATCCCATACTCGTAC 58.166 37.037 0.00 0.00 38.02 3.67
518 519 1.534595 CCATACTCGTACCCGCTCTAC 59.465 57.143 0.00 0.00 0.00 2.59
520 521 0.833287 TACTCGTACCCGCTCTACCT 59.167 55.000 0.00 0.00 0.00 3.08
532 533 3.871594 CCGCTCTACCTGATGGTTTTAAG 59.128 47.826 0.00 0.00 46.05 1.85
539 540 7.116736 TCTACCTGATGGTTTTAAGATTTCCC 58.883 38.462 0.00 0.00 46.05 3.97
594 595 8.937207 TCTACTTCTTTACCCTAGCCTAATAG 57.063 38.462 0.00 0.00 0.00 1.73
678 679 5.609782 AGTATATAATGGGCCTACATGGGA 58.390 41.667 4.53 0.00 36.00 4.37
679 680 6.035973 AGTATATAATGGGCCTACATGGGAA 58.964 40.000 4.53 0.00 36.00 3.97
1363 1395 8.244494 TAGATCGTTCTAGCATAATGAAATGC 57.756 34.615 0.00 0.58 41.61 3.56
1401 1433 1.074951 GACCCAAGTGGACCCCAAG 59.925 63.158 0.00 0.00 34.18 3.61
1476 1525 5.924825 AGAGTTTCAAATTCATGCAAGAAGC 59.075 36.000 10.47 0.22 45.96 3.86
1670 1720 3.003173 CTTCCGCCACTCCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
1691 1741 4.496341 CCATATGGCTGTGTGAACGATTTC 60.496 45.833 9.29 0.00 0.00 2.17
1835 1885 9.478238 AATCTACTCATACTCTGATATGATGCT 57.522 33.333 8.97 1.99 40.08 3.79
1894 1946 3.307904 GGGTTCCCCTTTCGTTATTCAGA 60.308 47.826 0.00 0.00 41.34 3.27
1940 1992 4.362932 TTGTCATGTTTTTGTTCAGCGA 57.637 36.364 0.00 0.00 0.00 4.93
1979 2031 6.639938 TCCTTAATCCTTCATATGGGAGGTA 58.360 40.000 19.27 10.84 34.89 3.08
1983 2035 9.236006 CTTAATCCTTCATATGGGAGGTATTTG 57.764 37.037 19.27 12.40 34.89 2.32
2020 2072 5.104693 TGGTTTAGAGTTTCTCACCTTCACA 60.105 40.000 8.18 0.00 33.32 3.58
2046 2098 2.802816 CGGCTGTTTGATACTGATAGCC 59.197 50.000 0.00 0.00 44.29 3.93
2232 2286 4.341235 TGATGTAGGCACTATACCTGTGTC 59.659 45.833 0.00 0.00 45.60 3.67
2384 2438 9.421399 TCCATTATCAGATGTACACGGATATAT 57.579 33.333 0.00 3.65 0.00 0.86
2462 2516 1.550976 AGCCTGGGAGTTTCTCTTACG 59.449 52.381 0.00 0.00 0.00 3.18
2463 2517 1.275573 GCCTGGGAGTTTCTCTTACGT 59.724 52.381 0.00 0.00 0.00 3.57
2470 2524 4.381398 GGGAGTTTCTCTTACGTACCCTTC 60.381 50.000 0.00 0.00 32.93 3.46
2476 2530 8.424133 AGTTTCTCTTACGTACCCTTCTTTTTA 58.576 33.333 0.00 0.00 0.00 1.52
2477 2531 8.491152 GTTTCTCTTACGTACCCTTCTTTTTAC 58.509 37.037 0.00 0.00 0.00 2.01
2478 2532 7.530426 TCTCTTACGTACCCTTCTTTTTACT 57.470 36.000 0.00 0.00 0.00 2.24
2481 2535 9.696917 CTCTTACGTACCCTTCTTTTTACTTTA 57.303 33.333 0.00 0.00 0.00 1.85
2484 2538 7.137490 ACGTACCCTTCTTTTTACTTTATGC 57.863 36.000 0.00 0.00 0.00 3.14
2485 2539 6.938596 ACGTACCCTTCTTTTTACTTTATGCT 59.061 34.615 0.00 0.00 0.00 3.79
2606 2661 4.170468 ACCAAAACACAATCTCCTGAGT 57.830 40.909 0.00 0.00 0.00 3.41
2751 3495 8.658609 CAATGTTCTAAATGCTTGTAAATTGGG 58.341 33.333 0.00 0.00 0.00 4.12
2778 3522 2.158885 GCTCCTTGGATAGTTCCCTGTC 60.159 54.545 0.00 0.00 41.83 3.51
2897 4996 7.843490 TTCTGTGTAAATTAGTGATGGTAGC 57.157 36.000 0.00 0.00 0.00 3.58
3007 5106 4.507710 GAGCAGTCCTTCATGTTGTATCA 58.492 43.478 0.00 0.00 0.00 2.15
3157 5256 0.106519 AAGGTGGTCATAGCCATGCC 60.107 55.000 0.00 0.00 41.08 4.40
3306 5405 5.746245 CGATCATTGTACTTCTCTTCAGGTC 59.254 44.000 0.00 0.00 0.00 3.85
3635 5734 9.993881 GTATTTTATGCTTGCGCTAAAATAATG 57.006 29.630 22.61 2.73 39.65 1.90
3639 5738 3.611986 TGCTTGCGCTAAAATAATGTTGC 59.388 39.130 9.73 0.00 36.97 4.17
3816 5922 3.366781 GCAAGCCTTCCTTTTGAGACATC 60.367 47.826 0.00 0.00 0.00 3.06
3846 5952 3.612479 GCGCTCATCAACCAATTTGTTCT 60.612 43.478 0.00 0.00 36.49 3.01
3847 5953 4.549458 CGCTCATCAACCAATTTGTTCTT 58.451 39.130 0.00 0.00 36.49 2.52
3848 5954 5.698832 CGCTCATCAACCAATTTGTTCTTA 58.301 37.500 0.00 0.00 36.49 2.10
3970 6078 5.916883 CAGTTGATGTGAAATGTTTCCAGAC 59.083 40.000 3.26 0.00 36.36 3.51
3999 6107 3.198068 CTCTTATGCTTATGCGTGGTGT 58.802 45.455 5.61 0.00 43.34 4.16
4097 6213 1.068474 GATCTGACGGTCACAAACGG 58.932 55.000 6.76 0.00 0.00 4.44
4098 6214 0.949105 ATCTGACGGTCACAAACGGC 60.949 55.000 6.76 0.00 38.94 5.68
4099 6215 2.589442 TGACGGTCACAAACGGCC 60.589 61.111 6.76 0.00 37.30 6.13
4100 6216 2.589442 GACGGTCACAAACGGCCA 60.589 61.111 2.24 0.00 30.28 5.36
4101 6217 2.590575 ACGGTCACAAACGGCCAG 60.591 61.111 2.24 0.00 0.00 4.85
4102 6218 2.590575 CGGTCACAAACGGCCAGT 60.591 61.111 2.24 0.00 0.00 4.00
4103 6219 2.184167 CGGTCACAAACGGCCAGTT 61.184 57.895 2.24 5.24 46.76 3.16
4130 6246 3.749665 TTTTTGAGGGGCTCACAAATG 57.250 42.857 10.78 0.00 40.46 2.32
4146 6262 5.046448 TCACAAATGGCCAGATAAGCAAAAT 60.046 36.000 13.05 0.00 0.00 1.82
4167 6283 0.462581 GATGGCCACGAATGAGAGCA 60.463 55.000 8.16 0.00 0.00 4.26
4369 6492 5.125100 TCATGAGCATGGTTTGAACTTTC 57.875 39.130 10.31 0.00 39.24 2.62
4410 6533 6.546972 TTTGTGTTGAATCAACTACGCATA 57.453 33.333 24.30 11.62 43.85 3.14
4411 6534 6.735678 TTGTGTTGAATCAACTACGCATAT 57.264 33.333 24.30 0.00 43.85 1.78
4412 6535 6.105657 TGTGTTGAATCAACTACGCATATG 57.894 37.500 24.30 0.00 43.85 1.78
4413 6536 5.641636 TGTGTTGAATCAACTACGCATATGT 59.358 36.000 24.30 0.00 43.85 2.29
4414 6537 5.959527 GTGTTGAATCAACTACGCATATGTG 59.040 40.000 24.30 14.72 43.85 3.21
4415 6538 5.641636 TGTTGAATCAACTACGCATATGTGT 59.358 36.000 24.28 24.28 43.85 3.72
4416 6539 6.148645 TGTTGAATCAACTACGCATATGTGTT 59.851 34.615 25.80 7.49 43.85 3.32
4417 6540 6.105657 TGAATCAACTACGCATATGTGTTG 57.894 37.500 25.80 24.49 39.74 3.33
4418 6541 5.872070 TGAATCAACTACGCATATGTGTTGA 59.128 36.000 29.23 26.03 46.82 3.18
4419 6542 6.370166 TGAATCAACTACGCATATGTGTTGAA 59.630 34.615 29.23 17.56 46.20 2.69
4420 6543 6.925610 ATCAACTACGCATATGTGTTGAAT 57.074 33.333 29.23 18.63 46.20 2.57
4421 6544 6.344572 TCAACTACGCATATGTGTTGAATC 57.655 37.500 29.23 0.93 42.32 2.52
4422 6545 5.872070 TCAACTACGCATATGTGTTGAATCA 59.128 36.000 29.23 11.37 42.32 2.57
4423 6546 6.370166 TCAACTACGCATATGTGTTGAATCAA 59.630 34.615 29.23 10.75 42.32 2.57
4424 6547 6.106877 ACTACGCATATGTGTTGAATCAAC 57.893 37.500 29.23 18.42 43.78 3.18
4425 6548 5.874810 ACTACGCATATGTGTTGAATCAACT 59.125 36.000 29.23 9.26 43.85 3.16
4426 6549 7.039270 ACTACGCATATGTGTTGAATCAACTA 58.961 34.615 29.23 14.91 43.85 2.24
4427 6550 6.106877 ACGCATATGTGTTGAATCAACTAC 57.893 37.500 24.30 19.74 43.85 2.73
4428 6551 5.190342 CGCATATGTGTTGAATCAACTACG 58.810 41.667 24.30 13.87 43.85 3.51
4429 6552 4.963953 GCATATGTGTTGAATCAACTACGC 59.036 41.667 24.30 11.01 43.85 4.42
4430 6553 5.447144 GCATATGTGTTGAATCAACTACGCA 60.447 40.000 24.30 17.54 43.85 5.24
4431 6554 6.718388 CATATGTGTTGAATCAACTACGCAT 58.282 36.000 24.30 21.64 43.85 4.73
4500 6623 8.347035 GCATTACAACCTAACTTGTGTTCTTTA 58.653 33.333 0.00 0.00 35.87 1.85
4616 6739 2.832129 CAAGGTCCTAGTTGGCTCAGTA 59.168 50.000 0.00 0.00 35.26 2.74
4658 6781 4.260985 TGACATATGTGTTCCATCACCAC 58.739 43.478 14.43 0.00 39.09 4.16
4873 6996 2.847327 ACAGACAGACCAGGTGAATG 57.153 50.000 0.00 0.00 0.00 2.67
4908 7052 1.522668 TGCGCTGATGCAGTTTAACT 58.477 45.000 9.73 0.00 40.62 2.24
5043 7187 4.578105 TGGCAAATTTGACAATTTTGACCC 59.422 37.500 24.47 21.60 44.72 4.46
5078 7222 3.576078 TTCACAGAATGAACTGGGTGT 57.424 42.857 0.00 0.00 42.62 4.16
5383 7527 2.956333 GGCAGTTACAGAAAAACAGGGT 59.044 45.455 0.00 0.00 0.00 4.34
5431 7575 1.082879 TCCCCTCTCCCAAATCCTTCT 59.917 52.381 0.00 0.00 0.00 2.85
5473 7617 3.577415 TGCATTTGTTCACCAATCCATCA 59.423 39.130 0.00 0.00 31.81 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.022735 CTGATGCTTCCCTGTCATGC 58.977 55.000 0.00 0.00 0.00 4.06
1 2 2.014857 CACTGATGCTTCCCTGTCATG 58.985 52.381 0.00 0.00 0.00 3.07
2 3 2.414994 CACTGATGCTTCCCTGTCAT 57.585 50.000 0.00 0.00 0.00 3.06
3 4 3.942351 CACTGATGCTTCCCTGTCA 57.058 52.632 0.00 0.00 0.00 3.58
14 15 1.807165 CACGGGTCTCGCACTGATG 60.807 63.158 0.00 0.00 43.89 3.07
15 16 2.214181 GACACGGGTCTCGCACTGAT 62.214 60.000 11.49 0.00 43.89 2.90
16 17 2.910479 ACACGGGTCTCGCACTGA 60.910 61.111 0.00 0.00 43.89 3.41
17 18 2.430921 GACACGGGTCTCGCACTG 60.431 66.667 11.49 0.00 43.89 3.66
18 19 2.023414 TTTGACACGGGTCTCGCACT 62.023 55.000 20.37 0.00 44.61 4.40
19 20 1.593209 TTTGACACGGGTCTCGCAC 60.593 57.895 20.37 0.00 44.61 5.34
20 21 1.593209 GTTTGACACGGGTCTCGCA 60.593 57.895 20.37 0.00 44.61 5.10
21 22 1.557443 CTGTTTGACACGGGTCTCGC 61.557 60.000 20.37 9.08 44.61 5.03
22 23 0.031585 TCTGTTTGACACGGGTCTCG 59.968 55.000 20.37 2.87 44.61 4.04
23 24 1.499049 GTCTGTTTGACACGGGTCTC 58.501 55.000 20.37 10.03 44.61 3.36
24 25 3.680842 GTCTGTTTGACACGGGTCT 57.319 52.632 20.37 0.00 44.61 3.85
32 33 0.383124 GTTCGCGCTGTCTGTTTGAC 60.383 55.000 5.56 0.00 45.54 3.18
33 34 1.817217 CGTTCGCGCTGTCTGTTTGA 61.817 55.000 5.56 0.00 0.00 2.69
34 35 1.437089 CGTTCGCGCTGTCTGTTTG 60.437 57.895 5.56 0.00 0.00 2.93
35 36 2.594962 CCGTTCGCGCTGTCTGTTT 61.595 57.895 5.56 0.00 39.70 2.83
36 37 3.036084 CCGTTCGCGCTGTCTGTT 61.036 61.111 5.56 0.00 39.70 3.16
48 49 4.373116 TCGCTGGGAGTGCCGTTC 62.373 66.667 0.00 0.00 33.83 3.95
49 50 4.379243 CTCGCTGGGAGTGCCGTT 62.379 66.667 13.10 0.00 38.02 4.44
52 53 3.474570 ATCCTCGCTGGGAGTGCC 61.475 66.667 18.81 0.00 41.46 5.01
53 54 2.202987 CATCCTCGCTGGGAGTGC 60.203 66.667 18.81 0.00 41.46 4.40
54 55 2.202987 GCATCCTCGCTGGGAGTG 60.203 66.667 18.81 12.95 41.46 3.51
55 56 3.474570 GGCATCCTCGCTGGGAGT 61.475 66.667 18.81 0.34 41.46 3.85
56 57 4.247380 GGGCATCCTCGCTGGGAG 62.247 72.222 14.24 14.24 42.75 4.30
59 60 4.113815 TTGGGGCATCCTCGCTGG 62.114 66.667 0.00 0.00 36.20 4.85
60 61 2.515523 CTTGGGGCATCCTCGCTG 60.516 66.667 0.00 0.00 36.20 5.18
61 62 3.801997 CCTTGGGGCATCCTCGCT 61.802 66.667 0.00 0.00 36.20 4.93
62 63 4.883354 CCCTTGGGGCATCCTCGC 62.883 72.222 0.00 0.00 35.35 5.03
63 64 3.089874 TCCCTTGGGGCATCCTCG 61.090 66.667 5.78 0.00 43.94 4.63
64 65 2.276309 CTGTCCCTTGGGGCATCCTC 62.276 65.000 13.92 0.00 43.94 3.71
65 66 2.204291 TGTCCCTTGGGGCATCCT 60.204 61.111 9.20 0.00 43.94 3.24
66 67 1.649271 ATCTGTCCCTTGGGGCATCC 61.649 60.000 13.92 0.00 43.94 3.51
67 68 1.140312 TATCTGTCCCTTGGGGCATC 58.860 55.000 13.92 0.00 43.94 3.91
68 69 0.846693 GTATCTGTCCCTTGGGGCAT 59.153 55.000 13.92 2.45 43.94 4.40
69 70 0.253160 AGTATCTGTCCCTTGGGGCA 60.253 55.000 12.87 12.87 43.94 5.36
70 71 0.470341 GAGTATCTGTCCCTTGGGGC 59.530 60.000 2.82 2.82 43.94 5.80
96 97 5.501156 GGGTGCCATCCTTATCTATAAAGG 58.499 45.833 0.00 0.00 44.17 3.11
97 98 5.178797 CGGGTGCCATCCTTATCTATAAAG 58.821 45.833 0.00 0.00 0.00 1.85
98 99 4.564821 GCGGGTGCCATCCTTATCTATAAA 60.565 45.833 0.00 0.00 33.98 1.40
99 100 3.055385 GCGGGTGCCATCCTTATCTATAA 60.055 47.826 0.00 0.00 33.98 0.98
100 101 2.500098 GCGGGTGCCATCCTTATCTATA 59.500 50.000 0.00 0.00 33.98 1.31
101 102 1.279271 GCGGGTGCCATCCTTATCTAT 59.721 52.381 0.00 0.00 33.98 1.98
102 103 0.685097 GCGGGTGCCATCCTTATCTA 59.315 55.000 0.00 0.00 33.98 1.98
103 104 1.451936 GCGGGTGCCATCCTTATCT 59.548 57.895 0.00 0.00 33.98 1.98
104 105 4.065110 GCGGGTGCCATCCTTATC 57.935 61.111 0.00 0.00 33.98 1.75
118 119 2.202783 CGTACCTAAACCCGGCGG 60.203 66.667 21.46 21.46 0.00 6.13
119 120 2.202783 CCGTACCTAAACCCGGCG 60.203 66.667 0.00 0.00 33.20 6.46
120 121 2.187685 CCCGTACCTAAACCCGGC 59.812 66.667 0.00 0.00 39.12 6.13
121 122 1.218854 CACCCGTACCTAAACCCGG 59.781 63.158 0.00 0.00 40.12 5.73
122 123 1.218854 CCACCCGTACCTAAACCCG 59.781 63.158 0.00 0.00 0.00 5.28
123 124 0.538584 CTCCACCCGTACCTAAACCC 59.461 60.000 0.00 0.00 0.00 4.11
124 125 0.107993 GCTCCACCCGTACCTAAACC 60.108 60.000 0.00 0.00 0.00 3.27
125 126 0.107993 GGCTCCACCCGTACCTAAAC 60.108 60.000 0.00 0.00 0.00 2.01
126 127 0.544833 TGGCTCCACCCGTACCTAAA 60.545 55.000 0.00 0.00 37.83 1.85
127 128 0.325860 ATGGCTCCACCCGTACCTAA 60.326 55.000 0.00 0.00 37.83 2.69
128 129 0.757935 GATGGCTCCACCCGTACCTA 60.758 60.000 0.00 0.00 37.83 3.08
129 130 2.040606 ATGGCTCCACCCGTACCT 59.959 61.111 0.00 0.00 37.83 3.08
130 131 2.504519 GATGGCTCCACCCGTACC 59.495 66.667 0.00 0.00 37.83 3.34
131 132 2.504519 GGATGGCTCCACCCGTAC 59.495 66.667 0.00 0.00 41.64 3.67
132 133 2.766651 GGGATGGCTCCACCCGTA 60.767 66.667 9.68 0.00 44.08 4.02
133 134 2.907482 TATGGGATGGCTCCACCCGT 62.907 60.000 18.64 18.64 45.91 5.28
134 135 2.146724 TATGGGATGGCTCCACCCG 61.147 63.158 16.44 0.00 45.91 5.28
135 136 1.456287 GTATGGGATGGCTCCACCC 59.544 63.158 15.36 15.36 44.08 4.61
136 137 1.456287 GGTATGGGATGGCTCCACC 59.544 63.158 5.54 0.00 44.08 4.61
137 138 1.062488 AGGGTATGGGATGGCTCCAC 61.062 60.000 5.54 0.00 44.08 4.02
138 139 0.328450 AAGGGTATGGGATGGCTCCA 60.328 55.000 5.54 0.00 44.08 3.86
139 140 1.351350 GTAAGGGTATGGGATGGCTCC 59.649 57.143 0.00 0.00 41.26 4.70
140 141 1.351350 GGTAAGGGTATGGGATGGCTC 59.649 57.143 0.00 0.00 0.00 4.70
141 142 1.446016 GGTAAGGGTATGGGATGGCT 58.554 55.000 0.00 0.00 0.00 4.75
142 143 0.404426 GGGTAAGGGTATGGGATGGC 59.596 60.000 0.00 0.00 0.00 4.40
143 144 0.690762 CGGGTAAGGGTATGGGATGG 59.309 60.000 0.00 0.00 0.00 3.51
144 145 0.036306 GCGGGTAAGGGTATGGGATG 59.964 60.000 0.00 0.00 0.00 3.51
145 146 1.131928 GGCGGGTAAGGGTATGGGAT 61.132 60.000 0.00 0.00 0.00 3.85
146 147 1.767268 GGCGGGTAAGGGTATGGGA 60.767 63.158 0.00 0.00 0.00 4.37
147 148 2.073716 TGGCGGGTAAGGGTATGGG 61.074 63.158 0.00 0.00 0.00 4.00
148 149 1.147600 GTGGCGGGTAAGGGTATGG 59.852 63.158 0.00 0.00 0.00 2.74
149 150 0.544697 AAGTGGCGGGTAAGGGTATG 59.455 55.000 0.00 0.00 0.00 2.39
150 151 2.179377 TAAGTGGCGGGTAAGGGTAT 57.821 50.000 0.00 0.00 0.00 2.73
151 152 1.764134 CATAAGTGGCGGGTAAGGGTA 59.236 52.381 0.00 0.00 0.00 3.69
152 153 0.544697 CATAAGTGGCGGGTAAGGGT 59.455 55.000 0.00 0.00 0.00 4.34
153 154 0.834612 TCATAAGTGGCGGGTAAGGG 59.165 55.000 0.00 0.00 0.00 3.95
154 155 1.485066 ACTCATAAGTGGCGGGTAAGG 59.515 52.381 0.00 0.00 33.32 2.69
155 156 2.981859 ACTCATAAGTGGCGGGTAAG 57.018 50.000 0.00 0.00 33.32 2.34
156 157 3.706600 AAACTCATAAGTGGCGGGTAA 57.293 42.857 0.00 0.00 35.36 2.85
157 158 3.118665 GGTAAACTCATAAGTGGCGGGTA 60.119 47.826 0.00 0.00 35.36 3.69
158 159 2.355412 GGTAAACTCATAAGTGGCGGGT 60.355 50.000 0.00 0.00 35.36 5.28
159 160 2.285977 GGTAAACTCATAAGTGGCGGG 58.714 52.381 0.00 0.00 35.36 6.13
160 161 2.285977 GGGTAAACTCATAAGTGGCGG 58.714 52.381 0.00 0.00 35.36 6.13
161 162 2.980568 TGGGTAAACTCATAAGTGGCG 58.019 47.619 0.00 0.00 35.36 5.69
162 163 4.335594 GTGATGGGTAAACTCATAAGTGGC 59.664 45.833 0.00 0.00 35.36 5.01
163 164 4.881850 GGTGATGGGTAAACTCATAAGTGG 59.118 45.833 0.00 0.00 35.36 4.00
164 165 5.745227 AGGTGATGGGTAAACTCATAAGTG 58.255 41.667 0.00 0.00 35.36 3.16
165 166 7.691993 ATAGGTGATGGGTAAACTCATAAGT 57.308 36.000 0.00 0.00 37.32 2.24
166 167 8.095169 GGTATAGGTGATGGGTAAACTCATAAG 58.905 40.741 0.00 0.00 0.00 1.73
167 168 7.016858 GGGTATAGGTGATGGGTAAACTCATAA 59.983 40.741 0.00 0.00 0.00 1.90
168 169 6.499350 GGGTATAGGTGATGGGTAAACTCATA 59.501 42.308 0.00 0.00 0.00 2.15
169 170 5.309806 GGGTATAGGTGATGGGTAAACTCAT 59.690 44.000 0.00 0.00 0.00 2.90
170 171 4.657039 GGGTATAGGTGATGGGTAAACTCA 59.343 45.833 0.00 0.00 0.00 3.41
171 172 4.657039 TGGGTATAGGTGATGGGTAAACTC 59.343 45.833 0.00 0.00 0.00 3.01
172 173 4.637600 TGGGTATAGGTGATGGGTAAACT 58.362 43.478 0.00 0.00 0.00 2.66
173 174 5.578157 ATGGGTATAGGTGATGGGTAAAC 57.422 43.478 0.00 0.00 0.00 2.01
174 175 5.548836 GGTATGGGTATAGGTGATGGGTAAA 59.451 44.000 0.00 0.00 0.00 2.01
175 176 5.095809 GGTATGGGTATAGGTGATGGGTAA 58.904 45.833 0.00 0.00 0.00 2.85
176 177 4.513310 GGGTATGGGTATAGGTGATGGGTA 60.513 50.000 0.00 0.00 0.00 3.69
177 178 3.527937 GGTATGGGTATAGGTGATGGGT 58.472 50.000 0.00 0.00 0.00 4.51
178 179 2.844348 GGGTATGGGTATAGGTGATGGG 59.156 54.545 0.00 0.00 0.00 4.00
179 180 2.500098 CGGGTATGGGTATAGGTGATGG 59.500 54.545 0.00 0.00 0.00 3.51
180 181 3.170717 ACGGGTATGGGTATAGGTGATG 58.829 50.000 0.00 0.00 0.00 3.07
181 182 3.181415 TGACGGGTATGGGTATAGGTGAT 60.181 47.826 0.00 0.00 0.00 3.06
182 183 2.177451 TGACGGGTATGGGTATAGGTGA 59.823 50.000 0.00 0.00 0.00 4.02
183 184 2.600790 TGACGGGTATGGGTATAGGTG 58.399 52.381 0.00 0.00 0.00 4.00
184 185 3.333313 TTGACGGGTATGGGTATAGGT 57.667 47.619 0.00 0.00 0.00 3.08
185 186 3.835978 TCATTGACGGGTATGGGTATAGG 59.164 47.826 0.00 0.00 0.00 2.57
186 187 4.527038 ACTCATTGACGGGTATGGGTATAG 59.473 45.833 0.00 0.00 33.80 1.31
187 188 4.485875 ACTCATTGACGGGTATGGGTATA 58.514 43.478 0.00 0.00 33.80 1.47
188 189 3.314693 ACTCATTGACGGGTATGGGTAT 58.685 45.455 0.00 0.00 33.80 2.73
189 190 2.754465 ACTCATTGACGGGTATGGGTA 58.246 47.619 0.00 0.00 33.80 3.69
190 191 1.580059 ACTCATTGACGGGTATGGGT 58.420 50.000 0.00 0.00 30.72 4.51
191 192 5.477607 TTATACTCATTGACGGGTATGGG 57.522 43.478 7.11 0.00 0.00 4.00
192 193 7.979444 ATTTTATACTCATTGACGGGTATGG 57.021 36.000 7.11 0.00 0.00 2.74
193 194 9.878599 GAAATTTTATACTCATTGACGGGTATG 57.121 33.333 7.11 0.00 0.00 2.39
194 195 9.063615 GGAAATTTTATACTCATTGACGGGTAT 57.936 33.333 0.00 3.44 0.00 2.73
195 196 8.047911 TGGAAATTTTATACTCATTGACGGGTA 58.952 33.333 0.00 0.00 0.00 3.69
196 197 6.887545 TGGAAATTTTATACTCATTGACGGGT 59.112 34.615 0.00 0.00 0.00 5.28
197 198 7.148154 TGTGGAAATTTTATACTCATTGACGGG 60.148 37.037 0.00 0.00 0.00 5.28
198 199 7.757526 TGTGGAAATTTTATACTCATTGACGG 58.242 34.615 0.00 0.00 0.00 4.79
204 205 8.774586 GCGAGTATGTGGAAATTTTATACTCAT 58.225 33.333 25.29 16.92 45.15 2.90
205 206 7.225931 GGCGAGTATGTGGAAATTTTATACTCA 59.774 37.037 25.29 13.34 45.15 3.41
206 207 7.225931 TGGCGAGTATGTGGAAATTTTATACTC 59.774 37.037 21.17 21.17 43.13 2.59
207 208 7.012044 GTGGCGAGTATGTGGAAATTTTATACT 59.988 37.037 13.49 13.49 37.30 2.12
208 209 7.130269 GTGGCGAGTATGTGGAAATTTTATAC 58.870 38.462 0.00 0.78 0.00 1.47
209 210 6.261381 GGTGGCGAGTATGTGGAAATTTTATA 59.739 38.462 0.00 0.00 0.00 0.98
210 211 5.067283 GGTGGCGAGTATGTGGAAATTTTAT 59.933 40.000 0.00 0.00 0.00 1.40
211 212 4.396790 GGTGGCGAGTATGTGGAAATTTTA 59.603 41.667 0.00 0.00 0.00 1.52
212 213 3.192633 GGTGGCGAGTATGTGGAAATTTT 59.807 43.478 0.00 0.00 0.00 1.82
213 214 2.752903 GGTGGCGAGTATGTGGAAATTT 59.247 45.455 0.00 0.00 0.00 1.82
214 215 2.026262 AGGTGGCGAGTATGTGGAAATT 60.026 45.455 0.00 0.00 0.00 1.82
215 216 1.559682 AGGTGGCGAGTATGTGGAAAT 59.440 47.619 0.00 0.00 0.00 2.17
216 217 0.981183 AGGTGGCGAGTATGTGGAAA 59.019 50.000 0.00 0.00 0.00 3.13
217 218 0.249120 CAGGTGGCGAGTATGTGGAA 59.751 55.000 0.00 0.00 0.00 3.53
218 219 0.613572 TCAGGTGGCGAGTATGTGGA 60.614 55.000 0.00 0.00 0.00 4.02
219 220 0.465705 ATCAGGTGGCGAGTATGTGG 59.534 55.000 0.00 0.00 0.00 4.17
220 221 2.288457 CCTATCAGGTGGCGAGTATGTG 60.288 54.545 0.00 0.00 0.00 3.21
221 222 1.964223 CCTATCAGGTGGCGAGTATGT 59.036 52.381 0.00 0.00 0.00 2.29
222 223 1.273606 CCCTATCAGGTGGCGAGTATG 59.726 57.143 0.00 0.00 31.93 2.39
223 224 1.133136 ACCCTATCAGGTGGCGAGTAT 60.133 52.381 0.00 0.00 39.24 2.12
224 225 0.260816 ACCCTATCAGGTGGCGAGTA 59.739 55.000 0.00 0.00 39.24 2.59
225 226 0.260816 TACCCTATCAGGTGGCGAGT 59.739 55.000 0.00 0.00 41.42 4.18
226 227 1.410004 TTACCCTATCAGGTGGCGAG 58.590 55.000 0.00 0.00 41.42 5.03
227 228 1.868713 TTTACCCTATCAGGTGGCGA 58.131 50.000 0.00 0.00 41.42 5.54
228 229 2.561569 CTTTTACCCTATCAGGTGGCG 58.438 52.381 0.00 0.00 41.42 5.69
229 230 2.422945 CCCTTTTACCCTATCAGGTGGC 60.423 54.545 0.00 0.00 41.42 5.01
230 231 2.850568 ACCCTTTTACCCTATCAGGTGG 59.149 50.000 0.00 0.00 41.42 4.61
231 232 3.886123 CACCCTTTTACCCTATCAGGTG 58.114 50.000 0.00 0.00 41.42 4.00
232 233 2.241430 GCACCCTTTTACCCTATCAGGT 59.759 50.000 0.00 0.00 44.37 4.00
233 234 2.422945 GGCACCCTTTTACCCTATCAGG 60.423 54.545 0.00 0.00 34.30 3.86
234 235 2.745152 CGGCACCCTTTTACCCTATCAG 60.745 54.545 0.00 0.00 0.00 2.90
235 236 1.210967 CGGCACCCTTTTACCCTATCA 59.789 52.381 0.00 0.00 0.00 2.15
236 237 1.211212 ACGGCACCCTTTTACCCTATC 59.789 52.381 0.00 0.00 0.00 2.08
237 238 1.064979 CACGGCACCCTTTTACCCTAT 60.065 52.381 0.00 0.00 0.00 2.57
238 239 0.325602 CACGGCACCCTTTTACCCTA 59.674 55.000 0.00 0.00 0.00 3.53
239 240 1.074248 CACGGCACCCTTTTACCCT 59.926 57.895 0.00 0.00 0.00 4.34
240 241 1.974875 CCACGGCACCCTTTTACCC 60.975 63.158 0.00 0.00 0.00 3.69
241 242 1.974875 CCCACGGCACCCTTTTACC 60.975 63.158 0.00 0.00 0.00 2.85
242 243 0.036590 TACCCACGGCACCCTTTTAC 59.963 55.000 0.00 0.00 0.00 2.01
243 244 0.769873 TTACCCACGGCACCCTTTTA 59.230 50.000 0.00 0.00 0.00 1.52
244 245 0.106116 TTTACCCACGGCACCCTTTT 60.106 50.000 0.00 0.00 0.00 2.27
245 246 0.106116 TTTTACCCACGGCACCCTTT 60.106 50.000 0.00 0.00 0.00 3.11
246 247 0.106116 TTTTTACCCACGGCACCCTT 60.106 50.000 0.00 0.00 0.00 3.95
247 248 0.113580 ATTTTTACCCACGGCACCCT 59.886 50.000 0.00 0.00 0.00 4.34
248 249 1.473677 GTATTTTTACCCACGGCACCC 59.526 52.381 0.00 0.00 0.00 4.61
249 250 1.473677 GGTATTTTTACCCACGGCACC 59.526 52.381 0.00 0.00 34.06 5.01
250 251 2.925578 GGTATTTTTACCCACGGCAC 57.074 50.000 0.00 0.00 34.06 5.01
258 259 6.363088 GCTTTGTAAACGTGGGTATTTTTACC 59.637 38.462 0.00 0.00 34.76 2.85
259 260 6.916932 TGCTTTGTAAACGTGGGTATTTTTAC 59.083 34.615 0.00 0.00 35.75 2.01
260 261 7.035840 TGCTTTGTAAACGTGGGTATTTTTA 57.964 32.000 0.00 0.00 0.00 1.52
261 262 5.903810 TGCTTTGTAAACGTGGGTATTTTT 58.096 33.333 0.00 0.00 0.00 1.94
262 263 5.517322 TGCTTTGTAAACGTGGGTATTTT 57.483 34.783 0.00 0.00 0.00 1.82
263 264 5.241949 TGATGCTTTGTAAACGTGGGTATTT 59.758 36.000 0.00 0.00 0.00 1.40
264 265 4.762765 TGATGCTTTGTAAACGTGGGTATT 59.237 37.500 0.00 0.00 0.00 1.89
265 266 4.328536 TGATGCTTTGTAAACGTGGGTAT 58.671 39.130 0.00 0.00 0.00 2.73
266 267 3.741249 TGATGCTTTGTAAACGTGGGTA 58.259 40.909 0.00 0.00 0.00 3.69
267 268 2.577700 TGATGCTTTGTAAACGTGGGT 58.422 42.857 0.00 0.00 0.00 4.51
268 269 3.634568 TTGATGCTTTGTAAACGTGGG 57.365 42.857 0.00 0.00 0.00 4.61
269 270 3.845775 CGATTGATGCTTTGTAAACGTGG 59.154 43.478 0.00 0.00 0.00 4.94
270 271 4.707563 TCGATTGATGCTTTGTAAACGTG 58.292 39.130 0.00 0.00 0.00 4.49
271 272 5.351233 TTCGATTGATGCTTTGTAAACGT 57.649 34.783 0.00 0.00 0.00 3.99
272 273 4.260656 GCTTCGATTGATGCTTTGTAAACG 59.739 41.667 12.51 0.00 40.94 3.60
273 274 4.260656 CGCTTCGATTGATGCTTTGTAAAC 59.739 41.667 16.48 0.00 41.72 2.01
274 275 4.153296 TCGCTTCGATTGATGCTTTGTAAA 59.847 37.500 16.48 0.00 41.72 2.01
275 276 3.682377 TCGCTTCGATTGATGCTTTGTAA 59.318 39.130 16.48 0.00 41.72 2.41
276 277 3.062099 GTCGCTTCGATTGATGCTTTGTA 59.938 43.478 16.48 0.00 41.72 2.41
277 278 2.076100 TCGCTTCGATTGATGCTTTGT 58.924 42.857 16.48 0.00 41.72 2.83
278 279 2.159667 TGTCGCTTCGATTGATGCTTTG 60.160 45.455 16.48 4.19 41.72 2.77
279 280 2.076100 TGTCGCTTCGATTGATGCTTT 58.924 42.857 16.48 0.00 41.72 3.51
280 281 1.394917 GTGTCGCTTCGATTGATGCTT 59.605 47.619 16.48 0.00 41.72 3.91
281 282 1.002366 GTGTCGCTTCGATTGATGCT 58.998 50.000 16.48 0.00 41.72 3.79
282 283 0.721154 TGTGTCGCTTCGATTGATGC 59.279 50.000 10.20 10.20 38.42 3.91
283 284 1.266550 CGTGTGTCGCTTCGATTGATG 60.267 52.381 0.00 0.00 38.42 3.07
284 285 0.992072 CGTGTGTCGCTTCGATTGAT 59.008 50.000 0.00 0.00 38.42 2.57
285 286 1.006825 CCGTGTGTCGCTTCGATTGA 61.007 55.000 0.00 0.00 38.42 2.57
286 287 1.282248 ACCGTGTGTCGCTTCGATTG 61.282 55.000 0.00 0.00 38.42 2.67
287 288 1.006571 ACCGTGTGTCGCTTCGATT 60.007 52.632 0.00 0.00 38.42 3.34
288 289 1.443872 GACCGTGTGTCGCTTCGAT 60.444 57.895 0.00 0.00 38.42 3.59
289 290 2.050714 GACCGTGTGTCGCTTCGA 60.051 61.111 3.85 0.00 38.35 3.71
296 297 2.904011 TTGTTTTGTGACCGTGTGTC 57.096 45.000 0.00 0.00 44.72 3.67
297 298 3.644884 TTTTGTTTTGTGACCGTGTGT 57.355 38.095 0.00 0.00 0.00 3.72
298 299 7.432545 TGTTATATTTTGTTTTGTGACCGTGTG 59.567 33.333 0.00 0.00 0.00 3.82
299 300 7.432838 GTGTTATATTTTGTTTTGTGACCGTGT 59.567 33.333 0.00 0.00 0.00 4.49
300 301 7.432545 TGTGTTATATTTTGTTTTGTGACCGTG 59.567 33.333 0.00 0.00 0.00 4.94
301 302 7.481642 TGTGTTATATTTTGTTTTGTGACCGT 58.518 30.769 0.00 0.00 0.00 4.83
302 303 7.916128 TGTGTTATATTTTGTTTTGTGACCG 57.084 32.000 0.00 0.00 0.00 4.79
303 304 8.635124 CGATGTGTTATATTTTGTTTTGTGACC 58.365 33.333 0.00 0.00 0.00 4.02
304 305 9.176181 ACGATGTGTTATATTTTGTTTTGTGAC 57.824 29.630 0.00 0.00 0.00 3.67
358 359 9.744468 GTTGTTATTAATGAGGAAGTGTTGTTT 57.256 29.630 0.00 0.00 0.00 2.83
359 360 8.908903 TGTTGTTATTAATGAGGAAGTGTTGTT 58.091 29.630 0.00 0.00 0.00 2.83
360 361 8.349983 GTGTTGTTATTAATGAGGAAGTGTTGT 58.650 33.333 0.00 0.00 0.00 3.32
361 362 8.349245 TGTGTTGTTATTAATGAGGAAGTGTTG 58.651 33.333 0.00 0.00 0.00 3.33
362 363 8.458573 TGTGTTGTTATTAATGAGGAAGTGTT 57.541 30.769 0.00 0.00 0.00 3.32
363 364 8.458573 TTGTGTTGTTATTAATGAGGAAGTGT 57.541 30.769 0.00 0.00 0.00 3.55
364 365 9.398170 CTTTGTGTTGTTATTAATGAGGAAGTG 57.602 33.333 0.00 0.00 0.00 3.16
365 366 9.131791 ACTTTGTGTTGTTATTAATGAGGAAGT 57.868 29.630 0.00 0.00 0.00 3.01
366 367 9.612620 GACTTTGTGTTGTTATTAATGAGGAAG 57.387 33.333 0.00 0.00 0.00 3.46
367 368 9.126151 TGACTTTGTGTTGTTATTAATGAGGAA 57.874 29.630 0.00 0.00 0.00 3.36
368 369 8.684386 TGACTTTGTGTTGTTATTAATGAGGA 57.316 30.769 0.00 0.00 0.00 3.71
432 433 6.648725 ATCTGACTAGTGCGAACAAATTAC 57.351 37.500 0.00 0.00 0.00 1.89
449 450 7.618137 ACCCATATACCCGTATAAAATCTGAC 58.382 38.462 0.00 0.00 32.39 3.51
472 473 8.574737 GGATCATATAATACGTACCCTCATACC 58.425 40.741 0.00 0.00 0.00 2.73
484 485 8.288208 GGTACGAGTATGGGATCATATAATACG 58.712 40.741 0.00 0.00 38.06 3.06
497 498 0.822532 AGAGCGGGTACGAGTATGGG 60.823 60.000 0.00 0.00 44.60 4.00
498 499 1.534595 GTAGAGCGGGTACGAGTATGG 59.465 57.143 0.00 0.00 44.60 2.74
503 504 0.463295 TCAGGTAGAGCGGGTACGAG 60.463 60.000 0.00 0.00 44.60 4.18
518 519 5.022787 TGGGGAAATCTTAAAACCATCAGG 58.977 41.667 0.00 0.00 42.21 3.86
520 521 7.566658 AAATGGGGAAATCTTAAAACCATCA 57.433 32.000 0.00 0.00 36.30 3.07
532 533 6.074648 TCATGGGTGTATAAATGGGGAAATC 58.925 40.000 0.00 0.00 0.00 2.17
603 604 2.112198 ATTACACATGCACCCGCGG 61.112 57.895 21.04 21.04 42.97 6.46
607 608 2.021457 GTACCCATTACACATGCACCC 58.979 52.381 0.00 0.00 0.00 4.61
608 609 2.021457 GGTACCCATTACACATGCACC 58.979 52.381 0.00 0.00 31.46 5.01
611 612 5.130350 ACAATAGGTACCCATTACACATGC 58.870 41.667 8.74 0.00 31.46 4.06
617 618 6.182507 TGGATGACAATAGGTACCCATTAC 57.817 41.667 8.74 5.49 0.00 1.89
650 651 8.938883 CCATGTAGGCCCATTATATACTTCTAT 58.061 37.037 0.00 0.00 0.00 1.98
651 652 7.347222 CCCATGTAGGCCCATTATATACTTCTA 59.653 40.741 0.00 0.00 35.39 2.10
652 653 6.158695 CCCATGTAGGCCCATTATATACTTCT 59.841 42.308 0.00 0.00 35.39 2.85
653 654 6.157994 TCCCATGTAGGCCCATTATATACTTC 59.842 42.308 0.00 0.00 35.39 3.01
654 655 6.035973 TCCCATGTAGGCCCATTATATACTT 58.964 40.000 0.00 0.00 35.39 2.24
655 656 5.609782 TCCCATGTAGGCCCATTATATACT 58.390 41.667 0.00 0.00 35.39 2.12
656 657 5.968676 TCCCATGTAGGCCCATTATATAC 57.031 43.478 0.00 0.00 35.39 1.47
657 658 6.035973 ACTTCCCATGTAGGCCCATTATATA 58.964 40.000 0.00 0.00 35.39 0.86
658 659 4.857933 ACTTCCCATGTAGGCCCATTATAT 59.142 41.667 0.00 0.00 35.39 0.86
667 668 3.857157 TCCATTACTTCCCATGTAGGC 57.143 47.619 0.00 0.00 35.39 3.93
673 674 4.154942 GGCAATCATCCATTACTTCCCAT 58.845 43.478 0.00 0.00 0.00 4.00
678 679 4.403432 CCACTTGGCAATCATCCATTACTT 59.597 41.667 0.00 0.00 32.92 2.24
679 680 3.956199 CCACTTGGCAATCATCCATTACT 59.044 43.478 0.00 0.00 32.92 2.24
752 782 2.070650 GGGCGGGGGACAATCTACT 61.071 63.158 0.00 0.00 0.00 2.57
909 941 2.962421 CTCCCCTTTTGCTGTTTTACCA 59.038 45.455 0.00 0.00 0.00 3.25
1029 1061 3.934391 CTCCGCGGTCCACTGGAAC 62.934 68.421 27.15 2.57 35.78 3.62
1363 1395 2.034687 CCCCTGCCACAACTCCAG 59.965 66.667 0.00 0.00 0.00 3.86
1392 1424 3.759086 GAGATTTTTCAGACTTGGGGTCC 59.241 47.826 0.00 0.00 45.54 4.46
1476 1525 2.293399 GCAAACTATAAGAATGGGGGCG 59.707 50.000 0.00 0.00 0.00 6.13
1521 1571 2.113986 GCAGCACAACTCAGGGGT 59.886 61.111 0.00 0.00 0.00 4.95
1670 1720 3.309682 CGAAATCGTTCACACAGCCATAT 59.690 43.478 0.00 0.00 32.89 1.78
1846 1898 7.349711 CGTTAATTAAATGGATAACAGTCCCG 58.650 38.462 0.00 0.00 37.48 5.14
1940 1992 6.390165 AGGATTAAGGAAGTTATAACAGCCCT 59.610 38.462 17.65 15.59 0.00 5.19
1979 2031 0.244450 CCAACGCACATGGCTCAAAT 59.756 50.000 0.00 0.00 41.67 2.32
1983 2035 0.878416 TAAACCAACGCACATGGCTC 59.122 50.000 0.00 0.00 41.89 4.70
2020 2072 3.937814 TCAGTATCAAACAGCCGTGAAT 58.062 40.909 0.00 0.00 0.00 2.57
2046 2098 5.033507 CACTAATCTCGTCATGTCTCTGTG 58.966 45.833 0.00 0.00 0.00 3.66
2476 2530 6.713762 TGCAAATAGGCAATAGCATAAAGT 57.286 33.333 0.00 0.00 40.78 2.66
2672 3416 0.679321 TGCAGGCACAGACAACAACA 60.679 50.000 0.00 0.00 0.00 3.33
2673 3417 0.455410 TTGCAGGCACAGACAACAAC 59.545 50.000 0.00 0.00 0.00 3.32
2674 3418 1.180907 TTTGCAGGCACAGACAACAA 58.819 45.000 0.00 0.00 0.00 2.83
2751 3495 3.129462 GGAACTATCCAAGGAGCAAAAGC 59.871 47.826 0.00 0.00 45.79 3.51
2897 4996 7.042950 TCCTTGCCAAATGACAAATTATCATG 58.957 34.615 6.01 0.00 36.89 3.07
2904 5003 6.117975 AGAAATCCTTGCCAAATGACAAAT 57.882 33.333 0.00 0.00 0.00 2.32
3157 5256 6.377429 CCATCTTCTCCATTGGATGATTATGG 59.623 42.308 5.70 15.01 40.14 2.74
3816 5922 0.919981 GTTGATGAGCGCGAAGAGAG 59.080 55.000 12.10 0.00 0.00 3.20
3846 5952 7.495934 GTGACAAGCAGAAGCCTTATCTAATAA 59.504 37.037 0.00 0.00 43.56 1.40
3847 5953 6.986817 GTGACAAGCAGAAGCCTTATCTAATA 59.013 38.462 0.00 0.00 43.56 0.98
3848 5954 5.819901 GTGACAAGCAGAAGCCTTATCTAAT 59.180 40.000 0.00 0.00 43.56 1.73
3970 6078 4.445718 CGCATAAGCATAAGAGGTGTAGTG 59.554 45.833 0.00 0.00 42.27 2.74
4111 6227 1.969923 CCATTTGTGAGCCCCTCAAAA 59.030 47.619 7.65 0.00 42.46 2.44
4112 6228 1.631405 CCATTTGTGAGCCCCTCAAA 58.369 50.000 0.00 6.45 42.46 2.69
4113 6229 0.899717 GCCATTTGTGAGCCCCTCAA 60.900 55.000 0.00 0.00 42.46 3.02
4114 6230 1.304381 GCCATTTGTGAGCCCCTCA 60.304 57.895 0.00 0.00 38.25 3.86
4115 6231 2.054453 GGCCATTTGTGAGCCCCTC 61.054 63.158 0.00 0.00 41.00 4.30
4116 6232 2.037847 GGCCATTTGTGAGCCCCT 59.962 61.111 0.00 0.00 41.00 4.79
4117 6233 2.283821 TGGCCATTTGTGAGCCCC 60.284 61.111 0.00 0.00 46.55 5.80
4118 6234 0.685458 ATCTGGCCATTTGTGAGCCC 60.685 55.000 5.51 0.00 46.55 5.19
4120 6236 2.223665 GCTTATCTGGCCATTTGTGAGC 60.224 50.000 5.51 8.06 0.00 4.26
4121 6237 3.018856 TGCTTATCTGGCCATTTGTGAG 58.981 45.455 5.51 0.98 0.00 3.51
4122 6238 3.084536 TGCTTATCTGGCCATTTGTGA 57.915 42.857 5.51 0.00 0.00 3.58
4123 6239 3.872511 TTGCTTATCTGGCCATTTGTG 57.127 42.857 5.51 0.00 0.00 3.33
4124 6240 4.888326 TTTTGCTTATCTGGCCATTTGT 57.112 36.364 5.51 0.00 0.00 2.83
4125 6241 4.573201 CCATTTTGCTTATCTGGCCATTTG 59.427 41.667 5.51 0.00 0.00 2.32
4126 6242 4.470664 TCCATTTTGCTTATCTGGCCATTT 59.529 37.500 5.51 0.00 0.00 2.32
4127 6243 4.032310 TCCATTTTGCTTATCTGGCCATT 58.968 39.130 5.51 0.00 0.00 3.16
4128 6244 3.645434 TCCATTTTGCTTATCTGGCCAT 58.355 40.909 5.51 0.00 0.00 4.40
4129 6245 3.098774 TCCATTTTGCTTATCTGGCCA 57.901 42.857 4.71 4.71 0.00 5.36
4130 6246 3.243975 CCATCCATTTTGCTTATCTGGCC 60.244 47.826 0.00 0.00 0.00 5.36
4146 6262 0.178767 CTCTCATTCGTGGCCATCCA 59.821 55.000 9.72 0.00 40.85 3.41
4167 6283 1.486726 CTAATCCCTGCCCTTTCGAGT 59.513 52.381 0.00 0.00 0.00 4.18
4369 6492 0.535102 AAGCGCCCCGGAGAATATTG 60.535 55.000 0.73 0.00 0.00 1.90
4410 6533 6.238456 CCATATGCGTAGTTGATTCAACACAT 60.238 38.462 26.73 23.24 45.66 3.21
4411 6534 5.064579 CCATATGCGTAGTTGATTCAACACA 59.935 40.000 26.73 19.40 45.66 3.72
4412 6535 5.293324 TCCATATGCGTAGTTGATTCAACAC 59.707 40.000 26.73 20.63 45.66 3.32
4413 6536 5.423886 TCCATATGCGTAGTTGATTCAACA 58.576 37.500 26.73 13.07 45.66 3.33
4414 6537 5.523916 ACTCCATATGCGTAGTTGATTCAAC 59.476 40.000 19.64 19.64 43.83 3.18
4415 6538 5.670485 ACTCCATATGCGTAGTTGATTCAA 58.330 37.500 0.00 0.00 0.00 2.69
4416 6539 5.276461 ACTCCATATGCGTAGTTGATTCA 57.724 39.130 0.00 0.00 0.00 2.57
4417 6540 7.891183 AATACTCCATATGCGTAGTTGATTC 57.109 36.000 8.36 0.00 0.00 2.52
4420 6543 9.457436 TCTATAATACTCCATATGCGTAGTTGA 57.543 33.333 8.36 4.22 0.00 3.18
4423 6546 8.353684 GCATCTATAATACTCCATATGCGTAGT 58.646 37.037 0.00 3.27 30.42 2.73
4424 6547 8.352942 TGCATCTATAATACTCCATATGCGTAG 58.647 37.037 0.00 0.00 40.96 3.51
4425 6548 8.232913 TGCATCTATAATACTCCATATGCGTA 57.767 34.615 0.00 1.55 40.96 4.42
4426 6549 7.112452 TGCATCTATAATACTCCATATGCGT 57.888 36.000 0.00 0.00 40.96 5.24
4427 6550 9.133627 GTATGCATCTATAATACTCCATATGCG 57.866 37.037 0.19 0.00 40.96 4.73
4470 6593 6.868622 ACACAAGTTAGGTTGTAATGCAAAA 58.131 32.000 0.00 0.00 38.65 2.44
4500 6623 1.755179 GTGATGGTACTGCAGGCATT 58.245 50.000 19.93 0.00 0.00 3.56
4616 6739 0.755327 GAACCCCAACAAGGCACAGT 60.755 55.000 0.00 0.00 35.39 3.55
4658 6781 1.202348 AGAGAATGCTCGTCACCATCG 60.202 52.381 0.00 0.00 45.98 3.84
4756 6879 5.998363 ACAAAGGTTAGAGGACAACAGAATC 59.002 40.000 0.00 0.00 0.00 2.52
4873 6996 1.632422 CGCAAACAAAGATCCATGGC 58.368 50.000 6.96 0.00 0.00 4.40
4908 7052 3.806949 AGTTGAAAGCCCACTATTCCA 57.193 42.857 0.00 0.00 0.00 3.53
4983 7127 2.731968 GCATGCATCCAAGTTTGTACCG 60.732 50.000 14.21 0.00 0.00 4.02
5043 7187 7.748683 TCATTCTGTGAATTTATTTCGTTTCCG 59.251 33.333 0.00 0.00 37.13 4.30
5078 7222 5.318630 GGTTAGGGGTGTGAAATAGTTTCA 58.681 41.667 1.24 1.24 46.68 2.69
5383 7527 4.783621 GAGTGCAGATGGCCGCCA 62.784 66.667 16.17 16.17 43.89 5.69
5431 7575 0.179121 CGGACCAAATCGTCGGATCA 60.179 55.000 0.00 0.00 35.67 2.92
5473 7617 4.263594 GGATCGGAGGAGAGTACCTTCTAT 60.264 50.000 0.00 0.00 40.73 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.