Multiple sequence alignment - TraesCS3D01G193100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G193100 chr3D 100.000 6511 0 0 1 6511 183737347 183743857 0.000000e+00 12024.0
1 TraesCS3D01G193100 chr3D 97.436 39 1 0 5311 5349 183742621 183742659 4.210000e-07 67.6
2 TraesCS3D01G193100 chr3D 97.436 39 1 0 5275 5313 183742657 183742695 4.210000e-07 67.6
3 TraesCS3D01G193100 chr3A 96.976 1885 31 1 3429 5313 234212613 234214471 0.000000e+00 3142.0
4 TraesCS3D01G193100 chr3A 94.776 1206 45 6 5311 6511 234214433 234215625 0.000000e+00 1862.0
5 TraesCS3D01G193100 chr3A 92.784 1178 43 14 2129 3276 234211447 234212612 0.000000e+00 1666.0
6 TraesCS3D01G193100 chr3A 93.980 598 32 3 1534 2130 234210812 234211406 0.000000e+00 902.0
7 TraesCS3D01G193100 chr3A 93.729 590 23 5 765 1343 234210230 234210816 0.000000e+00 872.0
8 TraesCS3D01G193100 chr3A 88.394 629 24 17 82 674 234209492 234210107 0.000000e+00 712.0
9 TraesCS3D01G193100 chr3A 92.308 156 12 0 3276 3431 568452787 568452632 8.500000e-54 222.0
10 TraesCS3D01G193100 chr3B 95.702 1210 37 6 5311 6511 262197014 262198217 0.000000e+00 1932.0
11 TraesCS3D01G193100 chr3B 91.127 1251 68 12 674 1887 262188844 262190088 0.000000e+00 1655.0
12 TraesCS3D01G193100 chr3B 92.504 1174 60 6 2129 3276 262190233 262191404 0.000000e+00 1655.0
13 TraesCS3D01G193100 chr3B 93.822 955 32 6 3429 4381 262191405 262192334 0.000000e+00 1411.0
14 TraesCS3D01G193100 chr3B 94.685 809 26 3 4378 5184 262196163 262196956 0.000000e+00 1240.0
15 TraesCS3D01G193100 chr3B 83.092 414 18 14 290 674 262188393 262188783 4.870000e-86 329.0
16 TraesCS3D01G193100 chr3B 82.326 215 19 10 78 275 262187979 262188191 1.120000e-37 169.0
17 TraesCS3D01G193100 chr3B 97.917 96 2 0 5218 5313 262196957 262197052 4.040000e-37 167.0
18 TraesCS3D01G193100 chrUn 100.000 421 0 0 3833 4253 476833311 476832891 0.000000e+00 778.0
19 TraesCS3D01G193100 chr2B 100.000 151 0 0 3277 3427 116848397 116848247 4.970000e-71 279.0
20 TraesCS3D01G193100 chr7A 98.684 152 2 0 3277 3428 376625329 376625178 2.990000e-68 270.0
21 TraesCS3D01G193100 chr1D 96.053 152 6 0 3276 3427 460733735 460733886 1.400000e-61 248.0
22 TraesCS3D01G193100 chr6A 94.839 155 6 2 3277 3430 107221586 107221433 2.350000e-59 241.0
23 TraesCS3D01G193100 chr6B 93.377 151 10 0 3277 3427 659210814 659210664 2.360000e-54 224.0
24 TraesCS3D01G193100 chr6B 83.957 187 27 3 2131 2315 120655047 120654862 6.710000e-40 176.0
25 TraesCS3D01G193100 chr5A 92.857 154 11 0 3277 3430 688965486 688965333 2.360000e-54 224.0
26 TraesCS3D01G193100 chr6D 91.720 157 13 0 3278 3434 354403503 354403659 1.100000e-52 219.0
27 TraesCS3D01G193100 chr1B 92.188 128 10 0 3276 3403 510985965 510986092 1.440000e-41 182.0
28 TraesCS3D01G193100 chr5B 84.615 182 26 2 2129 2308 174900589 174900770 5.190000e-41 180.0
29 TraesCS3D01G193100 chr4A 92.105 38 1 2 11 48 433732031 433732066 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G193100 chr3D 183737347 183743857 6510 False 4053.066667 12024 98.290667 1 6511 3 chr3D.!!$F1 6510
1 TraesCS3D01G193100 chr3A 234209492 234215625 6133 False 1526.000000 3142 93.439833 82 6511 6 chr3A.!!$F1 6429
2 TraesCS3D01G193100 chr3B 262187979 262198217 10238 False 1069.750000 1932 91.396875 78 6511 8 chr3B.!!$F1 6433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.168128 GCGAGAACAAAATGGGTCGG 59.832 55.0 0.00 0.00 0.00 4.79 F
32 33 0.168128 GAGAACAAAATGGGTCGGCG 59.832 55.0 0.00 0.00 0.00 6.46 F
201 218 0.377905 TTCGTTCGATCGCGTATCCA 59.622 50.0 11.09 0.00 38.98 3.41 F
1252 1598 0.463620 ATGTGCGGCTGGTTTTGTTT 59.536 45.0 0.00 0.00 0.00 2.83 F
1971 2325 0.324645 ATGCTTAGGGCCTGTTTGGG 60.325 55.0 18.53 0.65 40.92 4.12 F
2281 2680 0.535553 TACCCCGTTTGGCTTGTGTC 60.536 55.0 0.00 0.00 0.00 3.67 F
3368 3798 0.100503 AACAGTTGTCTGCAAACCGC 59.899 50.0 0.00 0.00 44.77 5.68 F
3370 3800 0.317269 CAGTTGTCTGCAAACCGCTG 60.317 55.0 0.00 0.00 43.06 5.18 F
3388 3818 0.392863 TGGATGGACCATCGTGCAAG 60.393 55.0 24.94 0.00 44.18 4.01 F
4376 4807 0.758123 TCCGCCATGCTATGATGTCA 59.242 50.0 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 1763 0.248498 CGCATCAAGCAGAATGGCAG 60.248 55.000 0.00 0.00 46.13 4.85 R
1491 1845 0.689623 AAGCAGACTCCCCTCTGTTG 59.310 55.000 0.00 0.00 40.03 3.33 R
1494 1848 1.754226 GAGTAAGCAGACTCCCCTCTG 59.246 57.143 6.74 0.00 40.07 3.35 R
2241 2640 1.595489 GCTTCACAATATGCCGCTTCG 60.595 52.381 0.00 0.00 0.00 3.79 R
3349 3779 0.100503 GCGGTTTGCAGACAACTGTT 59.899 50.000 9.87 0.00 45.04 3.16 R
3378 3808 0.948623 TGAACGACCCTTGCACGATG 60.949 55.000 0.24 0.00 0.00 3.84 R
5127 9392 0.249741 CGGACCGAAGTCTTTGTGGT 60.250 55.000 8.64 5.15 43.05 4.16 R
5137 9402 2.152830 CTAGAGTATCCCGGACCGAAG 58.847 57.143 17.49 6.50 33.66 3.79 R
5321 9586 2.175202 GCTTCTCAAGTCCTCTCCTGA 58.825 52.381 0.00 0.00 0.00 3.86 R
6000 10270 0.030504 TTGTGCCATTGTTGCTCGTG 59.969 50.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.557577 CAAATGGACATGCGAGAACAA 57.442 42.857 0.00 0.00 0.00 2.83
21 22 3.899734 CAAATGGACATGCGAGAACAAA 58.100 40.909 0.00 0.00 0.00 2.83
22 23 4.297510 CAAATGGACATGCGAGAACAAAA 58.702 39.130 0.00 0.00 0.00 2.44
23 24 4.789012 AATGGACATGCGAGAACAAAAT 57.211 36.364 0.00 0.00 0.00 1.82
24 25 3.557577 TGGACATGCGAGAACAAAATG 57.442 42.857 0.00 0.00 0.00 2.32
25 26 2.228582 TGGACATGCGAGAACAAAATGG 59.771 45.455 0.00 0.00 0.00 3.16
26 27 2.415893 GGACATGCGAGAACAAAATGGG 60.416 50.000 0.00 0.00 0.00 4.00
27 28 2.228822 GACATGCGAGAACAAAATGGGT 59.771 45.455 0.00 0.00 0.00 4.51
28 29 2.228822 ACATGCGAGAACAAAATGGGTC 59.771 45.455 0.00 0.00 0.00 4.46
29 30 0.871722 TGCGAGAACAAAATGGGTCG 59.128 50.000 0.00 0.00 0.00 4.79
30 31 0.168128 GCGAGAACAAAATGGGTCGG 59.832 55.000 0.00 0.00 0.00 4.79
31 32 0.168128 CGAGAACAAAATGGGTCGGC 59.832 55.000 0.00 0.00 0.00 5.54
32 33 0.168128 GAGAACAAAATGGGTCGGCG 59.832 55.000 0.00 0.00 0.00 6.46
33 34 1.443702 GAACAAAATGGGTCGGCGC 60.444 57.895 0.00 0.00 0.00 6.53
34 35 3.262142 AACAAAATGGGTCGGCGCG 62.262 57.895 0.00 0.00 0.00 6.86
35 36 3.732892 CAAAATGGGTCGGCGCGT 61.733 61.111 8.43 0.00 0.00 6.01
36 37 2.981350 AAAATGGGTCGGCGCGTT 60.981 55.556 8.43 5.61 38.23 4.84
37 38 3.262142 AAAATGGGTCGGCGCGTTG 62.262 57.895 12.62 0.00 36.96 4.10
39 40 3.592856 AATGGGTCGGCGCGTTGTA 62.593 57.895 11.06 0.00 35.77 2.41
40 41 4.728102 TGGGTCGGCGCGTTGTAG 62.728 66.667 8.43 0.00 0.00 2.74
41 42 4.729856 GGGTCGGCGCGTTGTAGT 62.730 66.667 8.43 0.00 0.00 2.73
42 43 2.735857 GGTCGGCGCGTTGTAGTT 60.736 61.111 8.43 0.00 0.00 2.24
43 44 2.468532 GTCGGCGCGTTGTAGTTG 59.531 61.111 8.43 0.00 0.00 3.16
44 45 3.408020 TCGGCGCGTTGTAGTTGC 61.408 61.111 8.43 0.00 0.00 4.17
45 46 3.411351 CGGCGCGTTGTAGTTGCT 61.411 61.111 8.43 0.00 0.00 3.91
46 47 2.474712 GGCGCGTTGTAGTTGCTC 59.525 61.111 8.43 0.00 0.00 4.26
47 48 2.027625 GGCGCGTTGTAGTTGCTCT 61.028 57.895 8.43 0.00 0.00 4.09
48 49 0.734942 GGCGCGTTGTAGTTGCTCTA 60.735 55.000 8.43 0.00 0.00 2.43
49 50 1.065358 GCGCGTTGTAGTTGCTCTAA 58.935 50.000 8.43 0.00 0.00 2.10
50 51 1.059264 GCGCGTTGTAGTTGCTCTAAG 59.941 52.381 8.43 0.00 0.00 2.18
51 52 2.325761 CGCGTTGTAGTTGCTCTAAGT 58.674 47.619 0.00 0.00 0.00 2.24
52 53 2.729882 CGCGTTGTAGTTGCTCTAAGTT 59.270 45.455 0.00 0.00 0.00 2.66
53 54 3.916172 CGCGTTGTAGTTGCTCTAAGTTA 59.084 43.478 0.00 0.00 0.00 2.24
54 55 4.561606 CGCGTTGTAGTTGCTCTAAGTTAT 59.438 41.667 0.00 0.00 0.00 1.89
55 56 5.061808 CGCGTTGTAGTTGCTCTAAGTTATT 59.938 40.000 0.00 0.00 0.00 1.40
56 57 6.467648 GCGTTGTAGTTGCTCTAAGTTATTC 58.532 40.000 0.00 0.00 0.00 1.75
57 58 6.310711 GCGTTGTAGTTGCTCTAAGTTATTCT 59.689 38.462 0.00 0.00 0.00 2.40
58 59 7.148623 GCGTTGTAGTTGCTCTAAGTTATTCTT 60.149 37.037 0.00 0.00 39.89 2.52
59 60 9.350357 CGTTGTAGTTGCTCTAAGTTATTCTTA 57.650 33.333 0.00 0.00 37.56 2.10
67 68 8.589335 TGCTCTAAGTTATTCTTAATTAGGCG 57.411 34.615 0.00 0.00 38.05 5.52
68 69 8.418662 TGCTCTAAGTTATTCTTAATTAGGCGA 58.581 33.333 0.00 0.00 38.05 5.54
69 70 9.425577 GCTCTAAGTTATTCTTAATTAGGCGAT 57.574 33.333 0.00 0.00 38.05 4.58
74 75 9.726438 AAGTTATTCTTAATTAGGCGATATGCT 57.274 29.630 0.00 0.00 37.99 3.79
75 76 9.155975 AGTTATTCTTAATTAGGCGATATGCTG 57.844 33.333 0.00 0.00 45.43 4.41
76 77 5.862924 TTCTTAATTAGGCGATATGCTGC 57.137 39.130 0.00 0.00 45.43 5.25
104 105 5.633601 TCGGCTGTAATCATATTCATTCGTC 59.366 40.000 0.00 0.00 0.00 4.20
105 106 5.163953 CGGCTGTAATCATATTCATTCGTCC 60.164 44.000 0.00 0.00 0.00 4.79
107 108 6.347725 GGCTGTAATCATATTCATTCGTCCAC 60.348 42.308 0.00 0.00 0.00 4.02
134 135 2.232208 GGGCAATCTTGTTCCCTGAAAG 59.768 50.000 0.00 0.00 35.87 2.62
195 212 1.594269 CGGGTATTCGTTCGATCGCG 61.594 60.000 11.09 9.64 39.35 5.87
201 218 0.377905 TTCGTTCGATCGCGTATCCA 59.622 50.000 11.09 0.00 38.98 3.41
223 240 5.390613 CATTTTAGGCTTCGAACACGATTT 58.609 37.500 0.00 0.00 35.96 2.17
234 251 7.742963 GCTTCGAACACGATTTATTTTTCACTA 59.257 33.333 0.00 0.00 35.96 2.74
246 263 7.861176 TTATTTTTCACTAATTGCGTTGTCC 57.139 32.000 0.00 0.00 0.00 4.02
270 461 5.180117 CCTTTCTTCGATCAAATGTCACAGT 59.820 40.000 0.00 0.00 0.00 3.55
313 518 3.328050 ACCTTCTGGAAAGGGTAGAACAG 59.672 47.826 8.58 0.00 41.71 3.16
390 598 2.604382 GGGGCCCACTGCATTTGT 60.604 61.111 26.86 0.00 43.89 2.83
541 766 4.051237 CAGAGATCACGTTCACTGTTTCA 58.949 43.478 6.54 0.00 31.93 2.69
542 767 4.149571 CAGAGATCACGTTCACTGTTTCAG 59.850 45.833 6.54 0.00 37.52 3.02
543 768 2.802816 AGATCACGTTCACTGTTTCAGC 59.197 45.455 0.00 0.00 34.37 4.26
544 769 2.017138 TCACGTTCACTGTTTCAGCA 57.983 45.000 0.00 0.00 34.37 4.41
545 770 2.351455 TCACGTTCACTGTTTCAGCAA 58.649 42.857 0.00 0.00 34.37 3.91
546 771 2.095213 TCACGTTCACTGTTTCAGCAAC 59.905 45.455 0.00 0.62 34.37 4.17
548 773 1.400142 CGTTCACTGTTTCAGCAACCA 59.600 47.619 0.00 0.00 34.37 3.67
549 774 2.159448 CGTTCACTGTTTCAGCAACCAA 60.159 45.455 0.00 0.00 34.37 3.67
550 775 3.489059 CGTTCACTGTTTCAGCAACCAAT 60.489 43.478 0.00 0.00 34.37 3.16
552 777 5.562696 CGTTCACTGTTTCAGCAACCAATAT 60.563 40.000 0.00 0.00 34.37 1.28
554 779 3.922240 CACTGTTTCAGCAACCAATATGC 59.078 43.478 0.00 0.00 44.15 3.14
636 882 5.741011 TCCACAGTAGCGGAGAATATTTTT 58.259 37.500 0.00 0.00 0.00 1.94
708 1015 2.289631 CCCCTGTCCAAAAGCCAAAATC 60.290 50.000 0.00 0.00 0.00 2.17
727 1034 3.753294 TCAGAGACTCAAAACAGGGTC 57.247 47.619 5.02 0.00 0.00 4.46
741 1048 7.725397 TCAAAACAGGGTCAGTACTAGTAGTAA 59.275 37.037 11.64 0.00 31.62 2.24
748 1055 7.677319 AGGGTCAGTACTAGTAGTAACCAAATT 59.323 37.037 25.42 9.87 33.05 1.82
757 1064 7.881751 ACTAGTAGTAACCAAATTGACTTTCCC 59.118 37.037 0.00 0.00 0.00 3.97
795 1109 2.673833 CTCGGGTTAGGATAATCGTGC 58.326 52.381 0.00 0.00 0.00 5.34
798 1112 2.030893 CGGGTTAGGATAATCGTGCGTA 60.031 50.000 0.00 0.00 0.00 4.42
810 1124 1.597195 TCGTGCGTATGATTCATTGGC 59.403 47.619 4.14 9.19 0.00 4.52
839 1153 7.308782 AGAAAGTAGATAATCTTTTGCGTGG 57.691 36.000 0.00 0.00 34.60 4.94
912 1227 3.155750 GGCTAGGCTAGGCTGCAT 58.844 61.111 33.61 4.98 46.78 3.96
989 1304 4.077184 CGCCTACTCCAACCCGCA 62.077 66.667 0.00 0.00 0.00 5.69
1153 1498 4.167307 AGGTTAGTTCCTTTTCCTTGGACA 59.833 41.667 0.00 0.00 33.52 4.02
1154 1499 4.277672 GGTTAGTTCCTTTTCCTTGGACAC 59.722 45.833 0.00 0.00 31.24 3.67
1191 1536 1.886542 GGTTCCTTTCACTTGCCGATT 59.113 47.619 0.00 0.00 0.00 3.34
1252 1598 0.463620 ATGTGCGGCTGGTTTTGTTT 59.536 45.000 0.00 0.00 0.00 2.83
1267 1613 5.450274 GGTTTTGTTTAGGTCTTTGCGGTTA 60.450 40.000 0.00 0.00 0.00 2.85
1328 1675 1.617947 CCGTCTTCCCCTCCCAAGAG 61.618 65.000 0.00 0.00 40.09 2.85
1352 1706 3.869246 CCACCGGTTAATTGCTACTAGTG 59.131 47.826 2.97 0.00 0.00 2.74
1443 1797 5.448496 GCTTGATGCGTGTTTGAACCATATA 60.448 40.000 0.00 0.00 0.00 0.86
1479 1833 3.178412 TCCCTTTGTTATCCAAACCCC 57.822 47.619 0.00 0.00 38.12 4.95
1491 1845 0.671796 CAAACCCCACCCTTTTCGAC 59.328 55.000 0.00 0.00 0.00 4.20
1494 1848 0.466739 ACCCCACCCTTTTCGACAAC 60.467 55.000 0.00 0.00 0.00 3.32
1515 1869 0.741915 GAGGGGAGTCTGCTTACTCG 59.258 60.000 11.34 0.00 45.69 4.18
1523 1877 2.163412 AGTCTGCTTACTCGCTCTTCAG 59.837 50.000 0.00 0.00 0.00 3.02
1525 1879 2.820197 TCTGCTTACTCGCTCTTCAGAA 59.180 45.455 0.00 0.00 0.00 3.02
1532 1886 2.291024 ACTCGCTCTTCAGAACCTCCTA 60.291 50.000 0.00 0.00 0.00 2.94
1581 1935 7.386848 TCAATTACGTTTCTTGGTCTTCCTAAG 59.613 37.037 0.00 0.00 34.23 2.18
1604 1958 6.795399 AGTAGGGTTCATGCAATTAATTTCG 58.205 36.000 0.00 0.00 0.00 3.46
1605 1959 5.009854 AGGGTTCATGCAATTAATTTCGG 57.990 39.130 0.00 0.00 0.00 4.30
1712 2066 2.911484 CCTGCTTGTCCTTGATAGTCC 58.089 52.381 0.00 0.00 0.00 3.85
1797 2151 9.981460 AATAAATCCCTATGTCCATAAGGATTC 57.019 33.333 21.91 0.00 46.32 2.52
1798 2152 6.394345 AATCCCTATGTCCATAAGGATTCC 57.606 41.667 18.35 0.00 45.01 3.01
1799 2153 6.101223 AATCCCTATGTCCATAAGGATTCCT 58.899 40.000 18.35 0.00 45.01 3.36
1800 2154 6.568040 AATCCCTATGTCCATAAGGATTCCTT 59.432 38.462 21.31 21.31 45.01 3.36
1801 2155 7.257199 AATCCCTATGTCCATAAGGATTCCTTC 60.257 40.741 21.20 7.60 45.01 3.46
1840 2194 4.209080 GCCAAATGAAAAACGGAACTTCAG 59.791 41.667 0.00 0.00 32.87 3.02
1914 2268 7.486647 TCTTTATTAGTAAGACTAAGCCGGTG 58.513 38.462 1.90 0.00 43.17 4.94
1923 2277 1.873270 CTAAGCCGGTGTTTTGCCCC 61.873 60.000 1.90 0.00 0.00 5.80
1971 2325 0.324645 ATGCTTAGGGCCTGTTTGGG 60.325 55.000 18.53 0.65 40.92 4.12
1979 2333 1.973812 GCCTGTTTGGGACTGCTCC 60.974 63.158 0.00 0.00 36.00 4.70
1981 2335 1.071471 CTGTTTGGGACTGCTCCGT 59.929 57.895 0.00 0.00 37.46 4.69
2001 2355 5.049954 TCCGTTCCACGAAAATCAGTTTTAG 60.050 40.000 0.00 0.00 46.05 1.85
2003 2357 5.844396 CGTTCCACGAAAATCAGTTTTAGTC 59.156 40.000 0.00 0.00 46.05 2.59
2004 2358 5.585500 TCCACGAAAATCAGTTTTAGTCG 57.415 39.130 0.00 0.00 39.92 4.18
2007 2361 5.371629 CACGAAAATCAGTTTTAGTCGACC 58.628 41.667 13.01 0.00 39.92 4.79
2012 2366 7.589954 CGAAAATCAGTTTTAGTCGACCAAATT 59.410 33.333 13.01 6.00 37.65 1.82
2019 2373 8.339714 CAGTTTTAGTCGACCAAATTCACTTTA 58.660 33.333 13.01 0.00 0.00 1.85
2031 2385 6.638468 CCAAATTCACTTTAGAGCAGTTTCAC 59.362 38.462 0.00 0.00 0.00 3.18
2043 2397 1.003545 CAGTTTCACACAGGAGTTGCG 60.004 52.381 0.00 0.00 0.00 4.85
2055 2409 0.881118 GAGTTGCGGCTCCATCAAAA 59.119 50.000 0.00 0.00 0.00 2.44
2072 2426 6.865205 CCATCAAAAAGACCAAAGAGAATGTC 59.135 38.462 0.00 0.00 0.00 3.06
2074 2428 8.786898 CATCAAAAAGACCAAAGAGAATGTCTA 58.213 33.333 0.00 0.00 37.09 2.59
2105 2459 5.877564 AGTTAACTCTAGCTTCAAGAATGGC 59.122 40.000 1.12 0.00 0.00 4.40
2140 2537 1.678101 GATCTATTTGGTGGCAGTGGC 59.322 52.381 10.30 10.30 40.13 5.01
2281 2680 0.535553 TACCCCGTTTGGCTTGTGTC 60.536 55.000 0.00 0.00 0.00 3.67
2287 2686 2.875933 CCGTTTGGCTTGTGTCTTCTAA 59.124 45.455 0.00 0.00 0.00 2.10
2292 2691 6.503524 GTTTGGCTTGTGTCTTCTAAATCAA 58.496 36.000 0.00 0.00 0.00 2.57
2353 2752 7.656137 TCGTAGAAAAACATTGCTTCTACTCTT 59.344 33.333 20.41 0.00 44.81 2.85
2552 2951 7.308435 TGTCATAGATACTGATCAACATAGCG 58.692 38.462 0.00 0.00 34.17 4.26
2692 3091 7.703298 TCGTGTTATAGGTAAATACATGCAC 57.297 36.000 0.00 0.00 0.00 4.57
2721 3120 5.531287 GTCAATGGTTCTGGTACTTTTGTCT 59.469 40.000 0.00 0.00 0.00 3.41
2827 3226 7.608376 AGCTCTTTGAAGGTTCCTATAAGAAAC 59.392 37.037 0.00 0.00 33.41 2.78
3014 3420 8.359642 TGTGCAAAAAGGGAAATGATATATAGC 58.640 33.333 0.00 0.00 0.00 2.97
3081 3487 0.961019 GCCCATTGTGCAGTGAAGAA 59.039 50.000 0.00 0.00 0.00 2.52
3096 3503 6.238869 GCAGTGAAGAATGATAAAATCTCCCC 60.239 42.308 0.00 0.00 0.00 4.81
3211 3641 3.131396 CGTGAAACAGAAGTGCCTTACT 58.869 45.455 0.00 0.00 37.90 2.24
3276 3706 5.497474 TCTTAACCCCAAGTATGAAAGAGC 58.503 41.667 0.00 0.00 0.00 4.09
3277 3707 3.806949 AACCCCAAGTATGAAAGAGCA 57.193 42.857 0.00 0.00 0.00 4.26
3278 3708 3.356529 ACCCCAAGTATGAAAGAGCAG 57.643 47.619 0.00 0.00 0.00 4.24
3279 3709 2.019984 CCCCAAGTATGAAAGAGCAGC 58.980 52.381 0.00 0.00 0.00 5.25
3280 3710 2.618816 CCCCAAGTATGAAAGAGCAGCA 60.619 50.000 0.00 0.00 0.00 4.41
3281 3711 2.421424 CCCAAGTATGAAAGAGCAGCAC 59.579 50.000 0.00 0.00 0.00 4.40
3282 3712 3.341823 CCAAGTATGAAAGAGCAGCACT 58.658 45.455 0.00 0.00 0.00 4.40
3283 3713 3.126514 CCAAGTATGAAAGAGCAGCACTG 59.873 47.826 0.00 0.00 0.00 3.66
3303 3733 3.882444 TGCTATACAGACGACAGTAGGT 58.118 45.455 0.00 0.00 0.00 3.08
3304 3734 5.027293 TGCTATACAGACGACAGTAGGTA 57.973 43.478 0.00 0.00 0.00 3.08
3305 3735 5.055144 TGCTATACAGACGACAGTAGGTAG 58.945 45.833 0.00 0.00 0.00 3.18
3306 3736 5.163374 TGCTATACAGACGACAGTAGGTAGA 60.163 44.000 0.00 0.00 0.00 2.59
3307 3737 5.177327 GCTATACAGACGACAGTAGGTAGAC 59.823 48.000 0.00 0.00 0.00 2.59
3308 3738 2.344950 ACAGACGACAGTAGGTAGACG 58.655 52.381 0.00 0.00 0.00 4.18
3309 3739 2.028658 ACAGACGACAGTAGGTAGACGA 60.029 50.000 0.00 0.00 0.00 4.20
3310 3740 3.196463 CAGACGACAGTAGGTAGACGAT 58.804 50.000 0.00 0.00 0.00 3.73
3311 3741 3.622163 CAGACGACAGTAGGTAGACGATT 59.378 47.826 0.00 0.00 0.00 3.34
3312 3742 4.807834 CAGACGACAGTAGGTAGACGATTA 59.192 45.833 0.00 0.00 0.00 1.75
3313 3743 5.466058 CAGACGACAGTAGGTAGACGATTAT 59.534 44.000 0.00 0.00 0.00 1.28
3314 3744 6.018098 CAGACGACAGTAGGTAGACGATTATT 60.018 42.308 0.00 0.00 0.00 1.40
3315 3745 6.018098 AGACGACAGTAGGTAGACGATTATTG 60.018 42.308 0.00 0.00 0.00 1.90
3316 3746 5.819379 ACGACAGTAGGTAGACGATTATTGA 59.181 40.000 0.00 0.00 0.00 2.57
3317 3747 6.317140 ACGACAGTAGGTAGACGATTATTGAA 59.683 38.462 0.00 0.00 0.00 2.69
3318 3748 6.632035 CGACAGTAGGTAGACGATTATTGAAC 59.368 42.308 0.00 0.00 0.00 3.18
3319 3749 6.493116 ACAGTAGGTAGACGATTATTGAACG 58.507 40.000 0.00 0.00 0.00 3.95
3320 3750 6.317140 ACAGTAGGTAGACGATTATTGAACGA 59.683 38.462 0.00 0.00 0.00 3.85
3321 3751 6.632035 CAGTAGGTAGACGATTATTGAACGAC 59.368 42.308 0.00 0.00 0.00 4.34
3322 3752 5.571784 AGGTAGACGATTATTGAACGACA 57.428 39.130 0.00 0.00 0.00 4.35
3323 3753 5.957798 AGGTAGACGATTATTGAACGACAA 58.042 37.500 0.00 0.00 42.95 3.18
3325 3755 6.696148 AGGTAGACGATTATTGAACGACAATC 59.304 38.462 13.56 3.64 44.77 2.67
3326 3756 5.968387 AGACGATTATTGAACGACAATCC 57.032 39.130 13.56 6.49 44.77 3.01
3327 3757 5.416083 AGACGATTATTGAACGACAATCCA 58.584 37.500 13.56 5.56 44.77 3.41
3328 3758 6.049149 AGACGATTATTGAACGACAATCCAT 58.951 36.000 13.56 8.98 44.77 3.41
3329 3759 6.538742 AGACGATTATTGAACGACAATCCATT 59.461 34.615 13.56 1.88 44.77 3.16
3330 3760 7.065803 AGACGATTATTGAACGACAATCCATTT 59.934 33.333 13.56 1.61 44.77 2.32
3331 3761 8.203937 ACGATTATTGAACGACAATCCATTTA 57.796 30.769 13.56 0.00 44.77 1.40
3332 3762 8.670135 ACGATTATTGAACGACAATCCATTTAA 58.330 29.630 13.56 5.15 44.77 1.52
3333 3763 9.158364 CGATTATTGAACGACAATCCATTTAAG 57.842 33.333 13.56 0.00 44.77 1.85
3334 3764 8.856490 ATTATTGAACGACAATCCATTTAAGC 57.144 30.769 13.56 0.00 44.77 3.09
3335 3765 4.695217 TGAACGACAATCCATTTAAGCC 57.305 40.909 0.00 0.00 0.00 4.35
3336 3766 3.126171 TGAACGACAATCCATTTAAGCCG 59.874 43.478 0.00 0.00 0.00 5.52
3337 3767 2.706890 ACGACAATCCATTTAAGCCGT 58.293 42.857 0.00 0.00 0.00 5.68
3338 3768 2.676342 ACGACAATCCATTTAAGCCGTC 59.324 45.455 0.00 0.00 0.00 4.79
3339 3769 2.031683 CGACAATCCATTTAAGCCGTCC 59.968 50.000 0.00 0.00 0.00 4.79
3340 3770 3.013921 GACAATCCATTTAAGCCGTCCA 58.986 45.455 0.00 0.00 0.00 4.02
3341 3771 3.631250 ACAATCCATTTAAGCCGTCCAT 58.369 40.909 0.00 0.00 0.00 3.41
3342 3772 3.381272 ACAATCCATTTAAGCCGTCCATG 59.619 43.478 0.00 0.00 0.00 3.66
3343 3773 1.388547 TCCATTTAAGCCGTCCATGC 58.611 50.000 0.00 0.00 0.00 4.06
3344 3774 1.102154 CCATTTAAGCCGTCCATGCA 58.898 50.000 0.00 0.00 0.00 3.96
3345 3775 1.682854 CCATTTAAGCCGTCCATGCAT 59.317 47.619 0.00 0.00 0.00 3.96
3346 3776 2.544277 CCATTTAAGCCGTCCATGCATG 60.544 50.000 20.19 20.19 0.00 4.06
3350 3780 3.451004 GCCGTCCATGCATGGCAA 61.451 61.111 36.47 20.89 46.48 4.52
3351 3781 3.704908 GCCGTCCATGCATGGCAAC 62.705 63.158 36.47 28.64 46.48 4.17
3362 3792 4.653893 TGGCAACAGTTGTCTGCA 57.346 50.000 18.62 0.00 46.17 4.41
3363 3793 2.879372 TGGCAACAGTTGTCTGCAA 58.121 47.368 18.62 0.00 46.17 4.08
3364 3794 1.180907 TGGCAACAGTTGTCTGCAAA 58.819 45.000 18.62 0.00 46.17 3.68
3365 3795 1.135141 TGGCAACAGTTGTCTGCAAAC 60.135 47.619 18.62 0.00 46.17 2.93
3366 3796 1.559831 GCAACAGTTGTCTGCAAACC 58.440 50.000 14.88 0.00 44.77 3.27
3367 3797 1.826327 CAACAGTTGTCTGCAAACCG 58.174 50.000 4.99 0.00 44.77 4.44
3368 3798 0.100503 AACAGTTGTCTGCAAACCGC 59.899 50.000 0.00 0.00 44.77 5.68
3369 3799 0.748005 ACAGTTGTCTGCAAACCGCT 60.748 50.000 0.00 0.00 44.77 5.52
3370 3800 0.317269 CAGTTGTCTGCAAACCGCTG 60.317 55.000 0.00 0.00 43.06 5.18
3371 3801 1.008538 GTTGTCTGCAAACCGCTGG 60.009 57.895 0.00 0.00 43.06 4.85
3372 3802 1.153066 TTGTCTGCAAACCGCTGGA 60.153 52.632 1.50 0.00 43.06 3.86
3373 3803 0.537143 TTGTCTGCAAACCGCTGGAT 60.537 50.000 1.50 0.00 43.06 3.41
3374 3804 1.236616 TGTCTGCAAACCGCTGGATG 61.237 55.000 1.50 2.20 43.06 3.51
3375 3805 1.675310 TCTGCAAACCGCTGGATGG 60.675 57.895 1.50 0.00 43.06 3.51
3376 3806 1.675310 CTGCAAACCGCTGGATGGA 60.675 57.895 1.50 1.63 43.06 3.41
3377 3807 1.926511 CTGCAAACCGCTGGATGGAC 61.927 60.000 1.50 0.00 43.06 4.02
3378 3808 2.700773 GCAAACCGCTGGATGGACC 61.701 63.158 1.50 0.00 37.77 4.46
3386 3816 3.397906 TGGATGGACCATCGTGCA 58.602 55.556 24.94 16.08 45.16 4.57
3387 3817 1.682257 TGGATGGACCATCGTGCAA 59.318 52.632 24.94 8.06 44.18 4.08
3388 3818 0.392863 TGGATGGACCATCGTGCAAG 60.393 55.000 24.94 0.00 44.18 4.01
3389 3819 1.097547 GGATGGACCATCGTGCAAGG 61.098 60.000 24.94 0.00 44.18 3.61
3390 3820 1.077501 ATGGACCATCGTGCAAGGG 60.078 57.895 0.00 0.00 44.18 3.95
3391 3821 1.852157 ATGGACCATCGTGCAAGGGT 61.852 55.000 0.00 0.00 44.18 4.34
3392 3822 3.730160 ATGGACCATCGTGCAAGGGTC 62.730 57.143 12.76 12.76 44.18 4.46
3393 3823 2.047274 ACCATCGTGCAAGGGTCG 60.047 61.111 0.00 0.00 0.00 4.79
3394 3824 2.047274 CCATCGTGCAAGGGTCGT 60.047 61.111 0.00 0.00 0.00 4.34
3395 3825 1.671054 CCATCGTGCAAGGGTCGTT 60.671 57.895 0.00 0.00 0.00 3.85
3396 3826 1.635663 CCATCGTGCAAGGGTCGTTC 61.636 60.000 0.00 0.00 0.00 3.95
3397 3827 0.948623 CATCGTGCAAGGGTCGTTCA 60.949 55.000 0.00 0.00 0.00 3.18
3398 3828 0.949105 ATCGTGCAAGGGTCGTTCAC 60.949 55.000 0.00 0.00 0.00 3.18
3399 3829 2.604174 CGTGCAAGGGTCGTTCACC 61.604 63.158 0.00 0.00 45.97 4.02
3409 3839 3.009301 GGTCGTTCACCCTATATGTCG 57.991 52.381 0.00 0.00 39.69 4.35
3410 3840 2.360165 GGTCGTTCACCCTATATGTCGT 59.640 50.000 0.00 0.00 39.69 4.34
3411 3841 3.369385 GTCGTTCACCCTATATGTCGTG 58.631 50.000 0.00 0.00 0.00 4.35
3412 3842 3.018856 TCGTTCACCCTATATGTCGTGT 58.981 45.455 0.00 0.00 0.00 4.49
3413 3843 3.113322 CGTTCACCCTATATGTCGTGTG 58.887 50.000 0.00 0.00 0.00 3.82
3414 3844 3.428452 CGTTCACCCTATATGTCGTGTGT 60.428 47.826 0.00 0.00 0.00 3.72
3415 3845 4.201940 CGTTCACCCTATATGTCGTGTGTA 60.202 45.833 0.00 0.00 0.00 2.90
3416 3846 4.906065 TCACCCTATATGTCGTGTGTAC 57.094 45.455 0.00 0.00 0.00 2.90
3417 3847 4.271661 TCACCCTATATGTCGTGTGTACA 58.728 43.478 0.00 0.00 0.00 2.90
3418 3848 4.337274 TCACCCTATATGTCGTGTGTACAG 59.663 45.833 0.00 0.00 0.00 2.74
3419 3849 3.067742 ACCCTATATGTCGTGTGTACAGC 59.932 47.826 0.00 0.00 0.00 4.40
3420 3850 3.067601 CCCTATATGTCGTGTGTACAGCA 59.932 47.826 0.00 0.00 0.00 4.41
3421 3851 4.290969 CCTATATGTCGTGTGTACAGCAG 58.709 47.826 0.00 0.00 0.00 4.24
3422 3852 3.868757 ATATGTCGTGTGTACAGCAGT 57.131 42.857 0.00 0.00 0.00 4.40
3423 3853 2.526304 ATGTCGTGTGTACAGCAGTT 57.474 45.000 0.00 0.00 0.00 3.16
3424 3854 2.303163 TGTCGTGTGTACAGCAGTTT 57.697 45.000 0.00 0.00 0.00 2.66
3425 3855 2.198406 TGTCGTGTGTACAGCAGTTTC 58.802 47.619 0.00 0.00 0.00 2.78
3426 3856 1.189446 GTCGTGTGTACAGCAGTTTCG 59.811 52.381 0.00 0.00 0.00 3.46
3427 3857 1.065851 TCGTGTGTACAGCAGTTTCGA 59.934 47.619 0.00 0.86 0.00 3.71
3509 3939 6.419791 CAGTACACAGGGGAAATTATTGGTA 58.580 40.000 0.00 0.00 0.00 3.25
3560 3990 3.191162 TGAACAAACATAGTGAGGCATGC 59.809 43.478 9.90 9.90 0.00 4.06
3672 4102 8.681486 ATGACATCACATAATTTTAGCAGCTA 57.319 30.769 0.00 0.00 0.00 3.32
4253 4684 3.447229 ACAATTACAATGTTAGCCAGCCC 59.553 43.478 0.00 0.00 0.00 5.19
4289 4720 3.372025 GGAATTGCCAGAGGTATTGGACT 60.372 47.826 0.00 0.00 37.96 3.85
4376 4807 0.758123 TCCGCCATGCTATGATGTCA 59.242 50.000 0.00 0.00 0.00 3.58
4649 8913 2.749621 GTCGGGTTGCTCAGAAAATCAT 59.250 45.455 0.00 0.00 0.00 2.45
4899 9163 2.200899 GAATTTGCACGCCTGTTGTTT 58.799 42.857 0.00 0.00 0.00 2.83
5127 9392 2.842496 AGAATTGATGACCCAGCTGAGA 59.158 45.455 17.39 0.00 0.00 3.27
5137 9402 1.517242 CCAGCTGAGACCACAAAGAC 58.483 55.000 17.39 0.00 0.00 3.01
5297 9562 3.768757 CTCAGTCATTTCAGGAGAGGACT 59.231 47.826 1.82 1.82 34.14 3.85
5298 9563 4.163427 TCAGTCATTTCAGGAGAGGACTT 58.837 43.478 4.63 0.00 32.62 3.01
5299 9564 4.020751 TCAGTCATTTCAGGAGAGGACTTG 60.021 45.833 4.63 2.48 32.62 3.16
5300 9565 4.020751 CAGTCATTTCAGGAGAGGACTTGA 60.021 45.833 4.63 0.00 32.62 3.02
5301 9566 4.222588 AGTCATTTCAGGAGAGGACTTGAG 59.777 45.833 1.82 0.00 31.61 3.02
5302 9567 4.221703 GTCATTTCAGGAGAGGACTTGAGA 59.778 45.833 0.00 0.00 0.00 3.27
5303 9568 4.840680 TCATTTCAGGAGAGGACTTGAGAA 59.159 41.667 0.00 0.00 0.00 2.87
5304 9569 4.881019 TTTCAGGAGAGGACTTGAGAAG 57.119 45.455 0.00 0.00 0.00 2.85
5305 9570 2.175202 TCAGGAGAGGACTTGAGAAGC 58.825 52.381 0.00 0.00 0.00 3.86
5306 9571 2.178580 CAGGAGAGGACTTGAGAAGCT 58.821 52.381 0.00 0.00 0.00 3.74
5307 9572 2.566724 CAGGAGAGGACTTGAGAAGCTT 59.433 50.000 0.00 0.00 0.00 3.74
5308 9573 2.566724 AGGAGAGGACTTGAGAAGCTTG 59.433 50.000 2.10 0.00 0.00 4.01
5309 9574 2.564947 GGAGAGGACTTGAGAAGCTTGA 59.435 50.000 2.10 0.00 0.00 3.02
5310 9575 3.197549 GGAGAGGACTTGAGAAGCTTGAT 59.802 47.826 2.10 0.00 0.00 2.57
5311 9576 4.432712 GAGAGGACTTGAGAAGCTTGATC 58.567 47.826 2.10 2.03 0.00 2.92
5312 9577 4.095946 AGAGGACTTGAGAAGCTTGATCT 58.904 43.478 2.10 0.00 0.00 2.75
5313 9578 4.160252 AGAGGACTTGAGAAGCTTGATCTC 59.840 45.833 2.10 5.16 42.94 2.75
5320 9585 5.417754 TGAGAAGCTTGATCTCAGTCATT 57.582 39.130 11.73 0.00 46.23 2.57
5321 9586 5.802465 TGAGAAGCTTGATCTCAGTCATTT 58.198 37.500 11.73 0.00 46.23 2.32
5322 9587 5.873712 TGAGAAGCTTGATCTCAGTCATTTC 59.126 40.000 11.73 0.00 46.23 2.17
5323 9588 5.802465 AGAAGCTTGATCTCAGTCATTTCA 58.198 37.500 2.10 0.00 0.00 2.69
5324 9589 5.875910 AGAAGCTTGATCTCAGTCATTTCAG 59.124 40.000 2.10 0.00 0.00 3.02
5325 9590 4.515361 AGCTTGATCTCAGTCATTTCAGG 58.485 43.478 0.00 0.00 0.00 3.86
5326 9591 4.224594 AGCTTGATCTCAGTCATTTCAGGA 59.775 41.667 0.00 0.00 0.00 3.86
5327 9592 4.571580 GCTTGATCTCAGTCATTTCAGGAG 59.428 45.833 0.00 0.00 0.00 3.69
5328 9593 5.626347 GCTTGATCTCAGTCATTTCAGGAGA 60.626 44.000 0.00 0.00 38.80 3.71
5329 9594 5.595257 TGATCTCAGTCATTTCAGGAGAG 57.405 43.478 0.00 0.00 37.96 3.20
5330 9595 4.405036 TGATCTCAGTCATTTCAGGAGAGG 59.595 45.833 0.00 0.00 37.96 3.69
5331 9596 4.053009 TCTCAGTCATTTCAGGAGAGGA 57.947 45.455 0.00 0.00 31.46 3.71
5332 9597 3.766591 TCTCAGTCATTTCAGGAGAGGAC 59.233 47.826 0.00 0.00 31.46 3.85
5345 9610 2.354604 GGAGAGGACTTGAGAAGCTTGG 60.355 54.545 2.10 0.00 0.00 3.61
5391 9660 2.361757 CAGCCATGAGTGTTGTCCAAAA 59.638 45.455 0.00 0.00 0.00 2.44
5466 9735 7.492524 TGAGTTTATATGTTCCTAGACTGCAG 58.507 38.462 13.48 13.48 0.00 4.41
5531 9801 3.737774 GCTCAACTTTTTGTTCAGCCATC 59.262 43.478 0.00 0.00 45.28 3.51
5541 9811 2.000447 GTTCAGCCATCGTGTAGGTTC 59.000 52.381 0.00 0.00 0.00 3.62
5718 9988 2.064762 GCAAGCATGAGACCTATAGCG 58.935 52.381 0.00 0.00 0.00 4.26
5732 10002 3.935203 CCTATAGCGCTTACATTGATGGG 59.065 47.826 18.68 8.84 0.00 4.00
5956 10226 2.025898 CATGTGCCCATTGTATGCTCA 58.974 47.619 0.00 0.00 33.64 4.26
6140 10410 1.133199 ACCAGGGCACAAATTCTTGGA 60.133 47.619 0.00 0.00 36.82 3.53
6141 10411 2.181975 CCAGGGCACAAATTCTTGGAT 58.818 47.619 0.00 0.00 36.82 3.41
6359 10633 3.730662 CGTTCGCATTGGAATTTCCGAAT 60.731 43.478 9.47 8.05 40.17 3.34
6361 10635 2.098934 TCGCATTGGAATTTCCGAATGG 59.901 45.455 25.38 19.64 40.17 3.16
6433 10707 3.228188 TCACTGGGAACAAAATGCTCT 57.772 42.857 0.00 0.00 42.06 4.09
6435 10709 2.886523 CACTGGGAACAAAATGCTCTGA 59.113 45.455 0.00 0.00 42.06 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.557577 TTGTTCTCGCATGTCCATTTG 57.442 42.857 0.00 0.00 0.00 2.32
1 2 4.582701 TTTTGTTCTCGCATGTCCATTT 57.417 36.364 0.00 0.00 0.00 2.32
2 3 4.487948 CATTTTGTTCTCGCATGTCCATT 58.512 39.130 0.00 0.00 0.00 3.16
3 4 3.119388 CCATTTTGTTCTCGCATGTCCAT 60.119 43.478 0.00 0.00 0.00 3.41
4 5 2.228582 CCATTTTGTTCTCGCATGTCCA 59.771 45.455 0.00 0.00 0.00 4.02
5 6 2.415893 CCCATTTTGTTCTCGCATGTCC 60.416 50.000 0.00 0.00 0.00 4.02
6 7 2.228822 ACCCATTTTGTTCTCGCATGTC 59.771 45.455 0.00 0.00 0.00 3.06
7 8 2.228822 GACCCATTTTGTTCTCGCATGT 59.771 45.455 0.00 0.00 0.00 3.21
8 9 2.728846 CGACCCATTTTGTTCTCGCATG 60.729 50.000 0.00 0.00 0.00 4.06
9 10 1.468520 CGACCCATTTTGTTCTCGCAT 59.531 47.619 0.00 0.00 0.00 4.73
10 11 0.871722 CGACCCATTTTGTTCTCGCA 59.128 50.000 0.00 0.00 0.00 5.10
11 12 0.168128 CCGACCCATTTTGTTCTCGC 59.832 55.000 0.00 0.00 0.00 5.03
12 13 0.168128 GCCGACCCATTTTGTTCTCG 59.832 55.000 0.00 0.00 0.00 4.04
13 14 0.168128 CGCCGACCCATTTTGTTCTC 59.832 55.000 0.00 0.00 0.00 2.87
14 15 1.862602 GCGCCGACCCATTTTGTTCT 61.863 55.000 0.00 0.00 0.00 3.01
15 16 1.443702 GCGCCGACCCATTTTGTTC 60.444 57.895 0.00 0.00 0.00 3.18
16 17 2.648454 GCGCCGACCCATTTTGTT 59.352 55.556 0.00 0.00 0.00 2.83
17 18 3.732892 CGCGCCGACCCATTTTGT 61.733 61.111 0.00 0.00 0.00 2.83
18 19 3.262142 AACGCGCCGACCCATTTTG 62.262 57.895 5.73 0.00 0.00 2.44
19 20 2.981350 AACGCGCCGACCCATTTT 60.981 55.556 5.73 0.00 0.00 1.82
20 21 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
21 22 3.592856 TACAACGCGCCGACCCATT 62.593 57.895 5.73 0.00 0.00 3.16
22 23 4.071875 TACAACGCGCCGACCCAT 62.072 61.111 5.73 0.00 0.00 4.00
23 24 4.728102 CTACAACGCGCCGACCCA 62.728 66.667 5.73 0.00 0.00 4.51
24 25 4.729856 ACTACAACGCGCCGACCC 62.730 66.667 5.73 0.00 0.00 4.46
25 26 2.735857 AACTACAACGCGCCGACC 60.736 61.111 5.73 0.00 0.00 4.79
26 27 2.468532 CAACTACAACGCGCCGAC 59.531 61.111 5.73 0.00 0.00 4.79
27 28 3.408020 GCAACTACAACGCGCCGA 61.408 61.111 5.73 0.00 0.00 5.54
28 29 3.348967 GAGCAACTACAACGCGCCG 62.349 63.158 5.73 0.00 0.00 6.46
29 30 0.734942 TAGAGCAACTACAACGCGCC 60.735 55.000 5.73 0.00 0.00 6.53
30 31 1.059264 CTTAGAGCAACTACAACGCGC 59.941 52.381 5.73 0.00 0.00 6.86
31 32 2.325761 ACTTAGAGCAACTACAACGCG 58.674 47.619 3.53 3.53 0.00 6.01
32 33 6.310711 AGAATAACTTAGAGCAACTACAACGC 59.689 38.462 0.00 0.00 0.00 4.84
33 34 7.813852 AGAATAACTTAGAGCAACTACAACG 57.186 36.000 0.00 0.00 0.00 4.10
41 42 9.042008 CGCCTAATTAAGAATAACTTAGAGCAA 57.958 33.333 0.00 0.00 41.33 3.91
42 43 8.418662 TCGCCTAATTAAGAATAACTTAGAGCA 58.581 33.333 0.00 0.00 41.33 4.26
43 44 8.813643 TCGCCTAATTAAGAATAACTTAGAGC 57.186 34.615 0.00 0.00 41.33 4.09
48 49 9.726438 AGCATATCGCCTAATTAAGAATAACTT 57.274 29.630 0.00 0.00 44.04 2.66
49 50 9.155975 CAGCATATCGCCTAATTAAGAATAACT 57.844 33.333 0.00 0.00 44.04 2.24
50 51 7.905493 GCAGCATATCGCCTAATTAAGAATAAC 59.095 37.037 0.00 0.00 44.04 1.89
51 52 7.606073 TGCAGCATATCGCCTAATTAAGAATAA 59.394 33.333 0.00 0.00 44.04 1.40
52 53 7.102993 TGCAGCATATCGCCTAATTAAGAATA 58.897 34.615 0.00 0.00 44.04 1.75
53 54 5.939883 TGCAGCATATCGCCTAATTAAGAAT 59.060 36.000 0.00 0.00 44.04 2.40
54 55 5.304778 TGCAGCATATCGCCTAATTAAGAA 58.695 37.500 0.00 0.00 44.04 2.52
55 56 4.893608 TGCAGCATATCGCCTAATTAAGA 58.106 39.130 0.00 0.00 44.04 2.10
56 57 4.692625 ACTGCAGCATATCGCCTAATTAAG 59.307 41.667 15.27 0.00 44.04 1.85
57 58 4.641396 ACTGCAGCATATCGCCTAATTAA 58.359 39.130 15.27 0.00 44.04 1.40
58 59 4.271696 ACTGCAGCATATCGCCTAATTA 57.728 40.909 15.27 0.00 44.04 1.40
59 60 3.131709 ACTGCAGCATATCGCCTAATT 57.868 42.857 15.27 0.00 44.04 1.40
60 61 2.847327 ACTGCAGCATATCGCCTAAT 57.153 45.000 15.27 0.00 44.04 1.73
61 62 2.483876 GAACTGCAGCATATCGCCTAA 58.516 47.619 15.27 0.00 44.04 2.69
62 63 1.602920 CGAACTGCAGCATATCGCCTA 60.603 52.381 15.27 0.00 44.04 3.93
63 64 0.877649 CGAACTGCAGCATATCGCCT 60.878 55.000 15.27 0.00 44.04 5.52
64 65 1.566563 CGAACTGCAGCATATCGCC 59.433 57.895 15.27 0.00 44.04 5.54
65 66 1.566563 CCGAACTGCAGCATATCGC 59.433 57.895 15.27 0.00 42.91 4.58
66 67 0.877649 AGCCGAACTGCAGCATATCG 60.878 55.000 15.27 17.69 0.00 2.92
67 68 0.585357 CAGCCGAACTGCAGCATATC 59.415 55.000 15.27 6.48 40.19 1.63
68 69 2.699073 CAGCCGAACTGCAGCATAT 58.301 52.632 15.27 0.00 40.19 1.78
69 70 4.206958 CAGCCGAACTGCAGCATA 57.793 55.556 15.27 0.00 40.19 3.14
195 212 5.501897 CGTGTTCGAAGCCTAAAATGGATAC 60.502 44.000 0.00 0.00 39.71 2.24
223 240 6.207810 AGGGACAACGCAATTAGTGAAAAATA 59.792 34.615 0.00 0.00 0.00 1.40
234 251 2.031157 CGAAGAAAGGGACAACGCAATT 60.031 45.455 0.00 0.00 0.00 2.32
246 263 5.180117 ACTGTGACATTTGATCGAAGAAAGG 59.820 40.000 1.10 0.00 43.58 3.11
270 461 4.322953 GGTTCTTGGTTCGGGTTATAGTCA 60.323 45.833 0.00 0.00 0.00 3.41
273 464 4.482952 AGGTTCTTGGTTCGGGTTATAG 57.517 45.455 0.00 0.00 0.00 1.31
313 518 7.573968 ATCAATTCTATTTTACTCCTGGTGC 57.426 36.000 0.00 0.00 0.00 5.01
458 678 4.776647 GTTGCGCGCCAACCATCC 62.777 66.667 30.77 6.83 46.44 3.51
481 701 3.311110 GGAGCAGTGACCGGGTGA 61.311 66.667 3.30 0.00 0.00 4.02
541 766 4.744237 AGATATTGGGCATATTGGTTGCT 58.256 39.130 0.00 0.00 40.03 3.91
542 767 4.379813 CGAGATATTGGGCATATTGGTTGC 60.380 45.833 0.00 0.00 39.41 4.17
543 768 4.156556 CCGAGATATTGGGCATATTGGTTG 59.843 45.833 0.00 0.00 0.00 3.77
544 769 4.202567 ACCGAGATATTGGGCATATTGGTT 60.203 41.667 0.00 0.00 29.95 3.67
545 770 3.330701 ACCGAGATATTGGGCATATTGGT 59.669 43.478 0.00 0.00 0.00 3.67
546 771 3.691118 CACCGAGATATTGGGCATATTGG 59.309 47.826 0.00 0.00 0.00 3.16
548 773 3.009473 AGCACCGAGATATTGGGCATATT 59.991 43.478 9.05 0.00 0.00 1.28
549 774 2.573462 AGCACCGAGATATTGGGCATAT 59.427 45.455 9.05 0.00 0.00 1.78
550 775 1.977854 AGCACCGAGATATTGGGCATA 59.022 47.619 9.05 0.00 0.00 3.14
552 777 0.106708 GAGCACCGAGATATTGGGCA 59.893 55.000 9.05 0.00 0.00 5.36
554 779 1.875576 GCTGAGCACCGAGATATTGGG 60.876 57.143 0.00 0.00 0.00 4.12
636 882 2.415608 CGAGGCCTAGGCGTGAGAA 61.416 63.158 32.60 0.00 43.06 2.87
708 1015 3.181461 ACTGACCCTGTTTTGAGTCTCTG 60.181 47.826 0.65 0.00 0.00 3.35
727 1034 9.924650 AAGTCAATTTGGTTACTACTAGTACTG 57.075 33.333 5.39 0.00 28.93 2.74
741 1048 2.938838 TGACGGGAAAGTCAATTTGGT 58.061 42.857 0.00 0.00 46.81 3.67
763 1077 1.995376 AACCCGAGCAGGTCAATTTT 58.005 45.000 0.00 0.00 40.05 1.82
768 1082 0.325296 ATCCTAACCCGAGCAGGTCA 60.325 55.000 0.00 0.00 40.05 4.02
795 1109 5.739752 TCTTTCTGCCAATGAATCATACG 57.260 39.130 0.00 0.00 0.00 3.06
798 1112 6.600882 ACTTTCTTTCTGCCAATGAATCAT 57.399 33.333 0.00 0.00 0.00 2.45
810 1124 9.483062 CGCAAAAGATTATCTACTTTCTTTCTG 57.517 33.333 0.00 0.00 37.42 3.02
839 1153 0.675633 AGTCACAAAGGCAATGCACC 59.324 50.000 7.79 0.00 0.00 5.01
912 1227 1.228706 TGGATGGGCGAGCCAAAAA 60.229 52.632 16.65 0.00 37.11 1.94
956 1271 2.962569 CGGTGAGCGAACTGGAGA 59.037 61.111 0.00 0.00 0.00 3.71
1191 1536 3.668447 AGAAAGAAGAAGAGCGCATCAA 58.332 40.909 11.47 0.00 0.00 2.57
1252 1598 1.621814 AGCTGTAACCGCAAAGACCTA 59.378 47.619 0.00 0.00 0.00 3.08
1328 1675 0.736636 GTAGCAATTAACCGGTGGCC 59.263 55.000 8.52 0.00 0.00 5.36
1329 1676 1.746470 AGTAGCAATTAACCGGTGGC 58.254 50.000 8.52 7.65 0.00 5.01
1409 1763 0.248498 CGCATCAAGCAGAATGGCAG 60.248 55.000 0.00 0.00 46.13 4.85
1479 1833 1.873591 CCTCTGTTGTCGAAAAGGGTG 59.126 52.381 0.00 0.00 0.00 4.61
1491 1845 0.689623 AAGCAGACTCCCCTCTGTTG 59.310 55.000 0.00 0.00 40.03 3.33
1494 1848 1.754226 GAGTAAGCAGACTCCCCTCTG 59.246 57.143 6.74 0.00 40.07 3.35
1515 1869 8.371699 ACATAATTATAGGAGGTTCTGAAGAGC 58.628 37.037 0.00 0.00 0.00 4.09
1523 1877 9.274206 GGAGACAAACATAATTATAGGAGGTTC 57.726 37.037 0.00 0.00 0.00 3.62
1525 1879 8.211629 GTGGAGACAAACATAATTATAGGAGGT 58.788 37.037 0.00 0.00 46.06 3.85
1532 1886 8.821686 TGAATGGTGGAGACAAACATAATTAT 57.178 30.769 0.00 0.00 46.06 1.28
1581 1935 5.977129 CCGAAATTAATTGCATGAACCCTAC 59.023 40.000 6.97 0.00 0.00 3.18
1604 1958 2.158798 GGGTAGGACACAAAGATAGCCC 60.159 54.545 0.00 0.00 0.00 5.19
1605 1959 2.772515 AGGGTAGGACACAAAGATAGCC 59.227 50.000 0.00 0.00 34.86 3.93
1712 2066 7.309194 CCTTTTAGTACACCTTTTCAAGATGGG 60.309 40.741 0.00 0.00 0.00 4.00
1797 2151 3.118992 GGCAAGGAAAGGCTAAATGAAGG 60.119 47.826 0.00 0.00 0.00 3.46
1798 2152 3.511146 TGGCAAGGAAAGGCTAAATGAAG 59.489 43.478 0.00 0.00 0.00 3.02
1799 2153 3.505386 TGGCAAGGAAAGGCTAAATGAA 58.495 40.909 0.00 0.00 0.00 2.57
1800 2154 3.168035 TGGCAAGGAAAGGCTAAATGA 57.832 42.857 0.00 0.00 0.00 2.57
1801 2155 3.959535 TTGGCAAGGAAAGGCTAAATG 57.040 42.857 0.00 0.00 0.00 2.32
1934 2288 4.347607 AGCATTTAGATTCTGTTGGGCTT 58.652 39.130 0.00 0.00 0.00 4.35
1942 2296 4.518211 CAGGCCCTAAGCATTTAGATTCTG 59.482 45.833 0.00 0.00 46.50 3.02
1979 2333 5.744490 ACTAAAACTGATTTTCGTGGAACG 58.256 37.500 0.00 0.00 45.74 3.95
1981 2335 5.754406 TCGACTAAAACTGATTTTCGTGGAA 59.246 36.000 4.99 0.00 36.19 3.53
2001 2355 4.451096 TGCTCTAAAGTGAATTTGGTCGAC 59.549 41.667 7.13 7.13 31.63 4.20
2003 2357 4.452455 ACTGCTCTAAAGTGAATTTGGTCG 59.548 41.667 0.00 0.00 31.63 4.79
2004 2358 5.948992 ACTGCTCTAAAGTGAATTTGGTC 57.051 39.130 0.00 0.00 31.63 4.02
2007 2361 7.166473 GTGTGAAACTGCTCTAAAGTGAATTTG 59.834 37.037 0.00 0.00 38.04 2.32
2012 2366 4.765273 TGTGTGAAACTGCTCTAAAGTGA 58.235 39.130 0.00 0.00 38.04 3.41
2019 2373 1.765314 ACTCCTGTGTGAAACTGCTCT 59.235 47.619 0.00 0.00 38.04 4.09
2043 2397 3.573967 TCTTTGGTCTTTTTGATGGAGCC 59.426 43.478 0.00 0.00 0.00 4.70
2050 2404 7.041098 GCTAGACATTCTCTTTGGTCTTTTTGA 60.041 37.037 0.00 0.00 40.76 2.69
2055 2409 5.753721 AGCTAGACATTCTCTTTGGTCTT 57.246 39.130 0.00 0.00 40.76 3.01
2072 2426 5.845391 AGCTAGAGTTAACTGGAAGCTAG 57.155 43.478 24.16 20.98 37.60 3.42
2074 2428 4.528596 TGAAGCTAGAGTTAACTGGAAGCT 59.471 41.667 21.65 21.65 37.60 3.74
2105 2459 7.043565 CCAAATAGATCCTTTCCACCAAATTG 58.956 38.462 0.00 0.00 0.00 2.32
2241 2640 1.595489 GCTTCACAATATGCCGCTTCG 60.595 52.381 0.00 0.00 0.00 3.79
2287 2686 9.264719 CTTGTTTCCTAAAATTCAGCTTTGATT 57.735 29.630 0.00 0.00 0.00 2.57
2292 2691 5.511373 GGGCTTGTTTCCTAAAATTCAGCTT 60.511 40.000 0.00 0.00 0.00 3.74
2353 2752 5.280011 CCAAGCTTCCCTCTAGTTCAACTTA 60.280 44.000 0.00 0.00 0.00 2.24
2355 2754 3.008485 CCAAGCTTCCCTCTAGTTCAACT 59.992 47.826 0.00 0.00 0.00 3.16
2692 3091 5.407407 AGTACCAGAACCATTGACTACTG 57.593 43.478 0.00 0.00 0.00 2.74
2732 3131 5.147767 TGCCATGGACTAGATTAAGAGCTA 58.852 41.667 18.40 0.00 0.00 3.32
2827 3226 2.898729 ATGGATCCGAACTGCAGTAG 57.101 50.000 22.01 16.97 0.00 2.57
2887 3286 5.352569 GGTCAATGTATACTCCATATGCAGC 59.647 44.000 4.17 0.00 39.01 5.25
3014 3420 2.444140 CCCCCTCACGGTCCCTAG 60.444 72.222 0.00 0.00 0.00 3.02
3055 3461 1.597797 CTGCACAATGGGCCAACGAT 61.598 55.000 11.89 0.00 0.00 3.73
3081 3487 7.614494 CAAGTGTTTTGGGGAGATTTTATCAT 58.386 34.615 0.00 0.00 0.00 2.45
3211 3641 3.112263 CAGGGGTGTTACTGGAGGAATA 58.888 50.000 0.00 0.00 0.00 1.75
3276 3706 2.159379 TGTCGTCTGTATAGCAGTGCTG 60.159 50.000 27.97 10.51 45.23 4.41
3277 3707 2.092323 TGTCGTCTGTATAGCAGTGCT 58.908 47.619 23.44 23.44 45.23 4.40
3278 3708 2.159366 ACTGTCGTCTGTATAGCAGTGC 60.159 50.000 7.13 7.13 45.23 4.40
3279 3709 3.766676 ACTGTCGTCTGTATAGCAGTG 57.233 47.619 0.00 0.00 45.23 3.66
3280 3710 3.878103 CCTACTGTCGTCTGTATAGCAGT 59.122 47.826 0.00 0.00 45.23 4.40
3281 3711 3.878103 ACCTACTGTCGTCTGTATAGCAG 59.122 47.826 0.44 0.00 46.34 4.24
3282 3712 3.882444 ACCTACTGTCGTCTGTATAGCA 58.118 45.455 0.44 0.00 0.00 3.49
3283 3713 5.177327 GTCTACCTACTGTCGTCTGTATAGC 59.823 48.000 0.44 0.00 0.00 2.97
3284 3714 5.401972 CGTCTACCTACTGTCGTCTGTATAG 59.598 48.000 0.44 1.90 0.00 1.31
3285 3715 5.067805 TCGTCTACCTACTGTCGTCTGTATA 59.932 44.000 0.44 0.00 0.00 1.47
3286 3716 4.118410 CGTCTACCTACTGTCGTCTGTAT 58.882 47.826 0.44 0.00 0.00 2.29
3287 3717 3.193479 TCGTCTACCTACTGTCGTCTGTA 59.807 47.826 0.19 0.19 0.00 2.74
3288 3718 2.028658 TCGTCTACCTACTGTCGTCTGT 60.029 50.000 0.00 0.00 0.00 3.41
3289 3719 2.614779 TCGTCTACCTACTGTCGTCTG 58.385 52.381 0.00 0.00 0.00 3.51
3290 3720 3.540314 ATCGTCTACCTACTGTCGTCT 57.460 47.619 0.00 0.00 0.00 4.18
3291 3721 5.921004 ATAATCGTCTACCTACTGTCGTC 57.079 43.478 0.00 0.00 0.00 4.20
3292 3722 5.819379 TCAATAATCGTCTACCTACTGTCGT 59.181 40.000 0.00 0.00 0.00 4.34
3293 3723 6.296365 TCAATAATCGTCTACCTACTGTCG 57.704 41.667 0.00 0.00 0.00 4.35
3294 3724 6.632035 CGTTCAATAATCGTCTACCTACTGTC 59.368 42.308 0.00 0.00 0.00 3.51
3295 3725 6.317140 TCGTTCAATAATCGTCTACCTACTGT 59.683 38.462 0.00 0.00 0.00 3.55
3296 3726 6.632035 GTCGTTCAATAATCGTCTACCTACTG 59.368 42.308 0.00 0.00 0.00 2.74
3297 3727 6.317140 TGTCGTTCAATAATCGTCTACCTACT 59.683 38.462 0.00 0.00 0.00 2.57
3298 3728 6.489675 TGTCGTTCAATAATCGTCTACCTAC 58.510 40.000 0.00 0.00 0.00 3.18
3299 3729 6.682423 TGTCGTTCAATAATCGTCTACCTA 57.318 37.500 0.00 0.00 0.00 3.08
3300 3730 5.571784 TGTCGTTCAATAATCGTCTACCT 57.428 39.130 0.00 0.00 0.00 3.08
3301 3731 6.074463 GGATTGTCGTTCAATAATCGTCTACC 60.074 42.308 8.11 0.00 45.49 3.18
3302 3732 6.474427 TGGATTGTCGTTCAATAATCGTCTAC 59.526 38.462 8.11 0.00 45.49 2.59
3303 3733 6.566141 TGGATTGTCGTTCAATAATCGTCTA 58.434 36.000 8.11 0.00 45.49 2.59
3304 3734 5.416083 TGGATTGTCGTTCAATAATCGTCT 58.584 37.500 8.11 0.00 45.49 4.18
3305 3735 5.712217 TGGATTGTCGTTCAATAATCGTC 57.288 39.130 8.11 0.00 45.49 4.20
3306 3736 6.677781 AATGGATTGTCGTTCAATAATCGT 57.322 33.333 8.11 2.61 45.49 3.73
3307 3737 9.158364 CTTAAATGGATTGTCGTTCAATAATCG 57.842 33.333 8.11 0.00 45.49 3.34
3308 3738 8.958043 GCTTAAATGGATTGTCGTTCAATAATC 58.042 33.333 8.11 0.00 45.49 1.75
3309 3739 7.920682 GGCTTAAATGGATTGTCGTTCAATAAT 59.079 33.333 8.11 4.33 45.49 1.28
3310 3740 7.254852 GGCTTAAATGGATTGTCGTTCAATAA 58.745 34.615 8.11 2.64 45.49 1.40
3311 3741 6.457663 CGGCTTAAATGGATTGTCGTTCAATA 60.458 38.462 8.11 0.00 45.49 1.90
3313 3743 4.378978 CGGCTTAAATGGATTGTCGTTCAA 60.379 41.667 0.00 0.00 40.53 2.69
3314 3744 3.126171 CGGCTTAAATGGATTGTCGTTCA 59.874 43.478 0.00 0.00 0.00 3.18
3315 3745 3.126343 ACGGCTTAAATGGATTGTCGTTC 59.874 43.478 0.00 0.00 0.00 3.95
3316 3746 3.078837 ACGGCTTAAATGGATTGTCGTT 58.921 40.909 0.00 0.00 0.00 3.85
3317 3747 2.676342 GACGGCTTAAATGGATTGTCGT 59.324 45.455 0.00 0.00 0.00 4.34
3318 3748 2.031683 GGACGGCTTAAATGGATTGTCG 59.968 50.000 0.00 0.00 0.00 4.35
3319 3749 3.013921 TGGACGGCTTAAATGGATTGTC 58.986 45.455 0.00 0.00 0.00 3.18
3320 3750 3.080300 TGGACGGCTTAAATGGATTGT 57.920 42.857 0.00 0.00 0.00 2.71
3321 3751 3.796504 GCATGGACGGCTTAAATGGATTG 60.797 47.826 0.00 0.00 0.00 2.67
3322 3752 2.362077 GCATGGACGGCTTAAATGGATT 59.638 45.455 0.00 0.00 0.00 3.01
3323 3753 1.956477 GCATGGACGGCTTAAATGGAT 59.044 47.619 0.00 0.00 0.00 3.41
3324 3754 1.340502 TGCATGGACGGCTTAAATGGA 60.341 47.619 0.00 0.00 0.00 3.41
3325 3755 1.102154 TGCATGGACGGCTTAAATGG 58.898 50.000 0.00 0.00 0.00 3.16
3326 3756 2.734670 CATGCATGGACGGCTTAAATG 58.265 47.619 19.40 0.00 0.00 2.32
3339 3769 1.271379 AGACAACTGTTGCCATGCATG 59.729 47.619 20.19 20.19 38.76 4.06
3340 3770 1.271379 CAGACAACTGTTGCCATGCAT 59.729 47.619 19.82 0.00 39.11 3.96
3341 3771 0.669619 CAGACAACTGTTGCCATGCA 59.330 50.000 19.82 0.00 39.11 3.96
3342 3772 0.665369 GCAGACAACTGTTGCCATGC 60.665 55.000 19.82 20.76 45.04 4.06
3343 3773 0.669619 TGCAGACAACTGTTGCCATG 59.330 50.000 19.82 15.85 45.04 3.66
3344 3774 1.401761 TTGCAGACAACTGTTGCCAT 58.598 45.000 19.82 0.96 45.04 4.40
3345 3775 1.135141 GTTTGCAGACAACTGTTGCCA 60.135 47.619 19.82 9.51 45.04 4.92
3346 3776 1.559831 GTTTGCAGACAACTGTTGCC 58.440 50.000 19.82 9.66 45.04 4.52
3347 3777 1.559831 GGTTTGCAGACAACTGTTGC 58.440 50.000 19.82 12.59 45.04 4.17
3348 3778 1.826327 CGGTTTGCAGACAACTGTTG 58.174 50.000 18.44 18.44 45.04 3.33
3349 3779 0.100503 GCGGTTTGCAGACAACTGTT 59.899 50.000 9.87 0.00 45.04 3.16
3350 3780 1.727467 GCGGTTTGCAGACAACTGT 59.273 52.632 9.87 0.00 45.04 3.55
3351 3781 4.614673 GCGGTTTGCAGACAACTG 57.385 55.556 9.87 6.95 45.45 3.16
3360 3790 2.700773 GGTCCATCCAGCGGTTTGC 61.701 63.158 0.00 0.00 46.98 3.68
3361 3791 1.303236 TGGTCCATCCAGCGGTTTG 60.303 57.895 0.00 0.00 41.93 2.93
3362 3792 3.166434 TGGTCCATCCAGCGGTTT 58.834 55.556 0.00 0.00 41.93 3.27
3370 3800 1.097547 CCTTGCACGATGGTCCATCC 61.098 60.000 23.58 11.99 37.57 3.51
3371 3801 1.097547 CCCTTGCACGATGGTCCATC 61.098 60.000 20.45 20.45 37.50 3.51
3372 3802 1.077501 CCCTTGCACGATGGTCCAT 60.078 57.895 3.26 3.26 0.00 3.41
3373 3803 2.350895 CCCTTGCACGATGGTCCA 59.649 61.111 0.00 0.00 0.00 4.02
3374 3804 1.745489 GACCCTTGCACGATGGTCC 60.745 63.158 10.55 0.00 41.14 4.46
3375 3805 2.100631 CGACCCTTGCACGATGGTC 61.101 63.158 11.32 11.32 43.07 4.02
3376 3806 2.047274 CGACCCTTGCACGATGGT 60.047 61.111 0.00 0.00 0.00 3.55
3377 3807 1.635663 GAACGACCCTTGCACGATGG 61.636 60.000 0.24 0.00 0.00 3.51
3378 3808 0.948623 TGAACGACCCTTGCACGATG 60.949 55.000 0.24 0.00 0.00 3.84
3379 3809 0.949105 GTGAACGACCCTTGCACGAT 60.949 55.000 0.24 0.00 0.00 3.73
3380 3810 1.593209 GTGAACGACCCTTGCACGA 60.593 57.895 0.24 0.00 0.00 4.35
3381 3811 2.604174 GGTGAACGACCCTTGCACG 61.604 63.158 0.00 0.00 39.10 5.34
3382 3812 3.340789 GGTGAACGACCCTTGCAC 58.659 61.111 0.00 0.00 39.10 4.57
3389 3819 2.360165 ACGACATATAGGGTGAACGACC 59.640 50.000 0.00 0.00 45.28 4.79
3390 3820 3.181493 ACACGACATATAGGGTGAACGAC 60.181 47.826 0.00 0.00 34.59 4.34
3391 3821 3.018856 ACACGACATATAGGGTGAACGA 58.981 45.455 0.00 0.00 34.59 3.85
3392 3822 3.113322 CACACGACATATAGGGTGAACG 58.887 50.000 0.00 0.00 34.59 3.95
3393 3823 4.119442 ACACACGACATATAGGGTGAAC 57.881 45.455 12.52 0.00 34.59 3.18
3394 3824 4.705991 TGTACACACGACATATAGGGTGAA 59.294 41.667 12.52 0.00 34.59 3.18
3395 3825 4.271661 TGTACACACGACATATAGGGTGA 58.728 43.478 12.52 0.00 34.59 4.02
3396 3826 4.607955 CTGTACACACGACATATAGGGTG 58.392 47.826 0.00 6.02 36.50 4.61
3397 3827 3.067742 GCTGTACACACGACATATAGGGT 59.932 47.826 0.00 0.00 0.00 4.34
3398 3828 3.067601 TGCTGTACACACGACATATAGGG 59.932 47.826 0.00 0.00 0.00 3.53
3399 3829 4.202020 ACTGCTGTACACACGACATATAGG 60.202 45.833 0.00 0.00 0.00 2.57
3400 3830 4.921547 ACTGCTGTACACACGACATATAG 58.078 43.478 0.00 0.00 0.00 1.31
3401 3831 4.976224 ACTGCTGTACACACGACATATA 57.024 40.909 0.00 0.00 0.00 0.86
3402 3832 3.868757 ACTGCTGTACACACGACATAT 57.131 42.857 0.00 0.00 0.00 1.78
3403 3833 3.653539 AACTGCTGTACACACGACATA 57.346 42.857 0.00 0.00 0.00 2.29
3404 3834 2.526304 AACTGCTGTACACACGACAT 57.474 45.000 0.00 0.00 0.00 3.06
3405 3835 2.198406 GAAACTGCTGTACACACGACA 58.802 47.619 0.00 0.00 0.00 4.35
3406 3836 1.189446 CGAAACTGCTGTACACACGAC 59.811 52.381 0.00 0.00 0.00 4.34
3407 3837 1.065851 TCGAAACTGCTGTACACACGA 59.934 47.619 0.00 2.20 0.00 4.35
3408 3838 1.483316 TCGAAACTGCTGTACACACG 58.517 50.000 0.00 0.00 0.00 4.49
3409 3839 3.120649 GGAATCGAAACTGCTGTACACAC 60.121 47.826 0.00 0.00 0.00 3.82
3410 3840 3.064207 GGAATCGAAACTGCTGTACACA 58.936 45.455 0.00 0.00 0.00 3.72
3411 3841 3.064207 TGGAATCGAAACTGCTGTACAC 58.936 45.455 0.00 0.00 0.00 2.90
3412 3842 3.064207 GTGGAATCGAAACTGCTGTACA 58.936 45.455 0.00 0.00 0.00 2.90
3413 3843 2.092211 CGTGGAATCGAAACTGCTGTAC 59.908 50.000 0.00 0.00 0.00 2.90
3414 3844 2.029739 TCGTGGAATCGAAACTGCTGTA 60.030 45.455 0.00 0.00 36.89 2.74
3415 3845 1.148310 CGTGGAATCGAAACTGCTGT 58.852 50.000 0.00 0.00 0.00 4.40
3416 3846 1.428448 TCGTGGAATCGAAACTGCTG 58.572 50.000 0.00 0.00 36.89 4.41
3417 3847 2.386661 ATCGTGGAATCGAAACTGCT 57.613 45.000 0.00 0.00 42.99 4.24
3418 3848 2.774007 CAATCGTGGAATCGAAACTGC 58.226 47.619 0.00 0.00 42.99 4.40
3419 3849 2.159430 TGCAATCGTGGAATCGAAACTG 59.841 45.455 0.00 0.00 42.99 3.16
3420 3850 2.422597 TGCAATCGTGGAATCGAAACT 58.577 42.857 0.00 0.00 42.99 2.66
3421 3851 2.892373 TGCAATCGTGGAATCGAAAC 57.108 45.000 0.00 0.00 42.99 2.78
3422 3852 2.811431 ACTTGCAATCGTGGAATCGAAA 59.189 40.909 0.00 0.00 42.99 3.46
3423 3853 2.422597 ACTTGCAATCGTGGAATCGAA 58.577 42.857 0.00 0.00 42.99 3.71
3424 3854 2.093306 ACTTGCAATCGTGGAATCGA 57.907 45.000 0.00 0.00 43.86 3.59
3425 3855 5.006261 TGTTATACTTGCAATCGTGGAATCG 59.994 40.000 0.00 0.00 34.22 3.34
3426 3856 6.257849 TCTGTTATACTTGCAATCGTGGAATC 59.742 38.462 0.00 0.00 34.22 2.52
3427 3857 6.112734 TCTGTTATACTTGCAATCGTGGAAT 58.887 36.000 0.00 0.00 34.22 3.01
3509 3939 5.351465 CAGGTGTTAAGCGTTGACTCATATT 59.649 40.000 0.00 0.00 0.00 1.28
3672 4102 8.291032 CGAGACTACGGAAGATTTTATCATAGT 58.709 37.037 0.00 0.00 0.00 2.12
4289 4720 5.765510 ACATTCCTAATATTTCCACCAGCA 58.234 37.500 0.00 0.00 0.00 4.41
4899 9163 2.092429 GTGGTGGCATCATAGGAAAGGA 60.092 50.000 2.60 0.00 0.00 3.36
5070 9334 4.572909 ACCTGTACGTTGTTTTCCCTATC 58.427 43.478 0.00 0.00 0.00 2.08
5127 9392 0.249741 CGGACCGAAGTCTTTGTGGT 60.250 55.000 8.64 5.15 43.05 4.16
5137 9402 2.152830 CTAGAGTATCCCGGACCGAAG 58.847 57.143 17.49 6.50 33.66 3.79
5297 9562 4.879197 TGACTGAGATCAAGCTTCTCAA 57.121 40.909 15.62 1.39 46.58 3.02
5298 9563 5.417754 AATGACTGAGATCAAGCTTCTCA 57.582 39.130 14.39 14.39 45.53 3.27
5299 9564 5.873712 TGAAATGACTGAGATCAAGCTTCTC 59.126 40.000 6.92 6.92 40.06 2.87
5300 9565 5.802465 TGAAATGACTGAGATCAAGCTTCT 58.198 37.500 0.00 0.00 30.82 2.85
5301 9566 5.064962 CCTGAAATGACTGAGATCAAGCTTC 59.935 44.000 0.00 0.00 30.82 3.86
5302 9567 4.942483 CCTGAAATGACTGAGATCAAGCTT 59.058 41.667 0.00 0.00 30.82 3.74
5303 9568 4.224594 TCCTGAAATGACTGAGATCAAGCT 59.775 41.667 0.00 0.00 30.82 3.74
5304 9569 4.511527 TCCTGAAATGACTGAGATCAAGC 58.488 43.478 0.00 0.00 30.82 4.01
5305 9570 5.975282 TCTCCTGAAATGACTGAGATCAAG 58.025 41.667 0.00 0.00 30.82 3.02
5306 9571 5.105023 CCTCTCCTGAAATGACTGAGATCAA 60.105 44.000 0.00 0.00 30.82 2.57
5307 9572 4.405036 CCTCTCCTGAAATGACTGAGATCA 59.595 45.833 0.00 0.00 0.00 2.92
5308 9573 4.648762 TCCTCTCCTGAAATGACTGAGATC 59.351 45.833 0.00 0.00 0.00 2.75
5309 9574 4.405358 GTCCTCTCCTGAAATGACTGAGAT 59.595 45.833 0.00 0.00 0.00 2.75
5310 9575 3.766591 GTCCTCTCCTGAAATGACTGAGA 59.233 47.826 0.00 0.00 0.00 3.27
5311 9576 3.768757 AGTCCTCTCCTGAAATGACTGAG 59.231 47.826 0.00 0.00 32.22 3.35
5312 9577 3.784178 AGTCCTCTCCTGAAATGACTGA 58.216 45.455 0.00 0.00 32.22 3.41
5313 9578 4.020751 TCAAGTCCTCTCCTGAAATGACTG 60.021 45.833 0.00 0.00 33.64 3.51
5314 9579 4.163427 TCAAGTCCTCTCCTGAAATGACT 58.837 43.478 0.00 0.00 34.73 3.41
5315 9580 4.221703 TCTCAAGTCCTCTCCTGAAATGAC 59.778 45.833 0.00 0.00 0.00 3.06
5316 9581 4.420206 TCTCAAGTCCTCTCCTGAAATGA 58.580 43.478 0.00 0.00 0.00 2.57
5317 9582 4.815533 TCTCAAGTCCTCTCCTGAAATG 57.184 45.455 0.00 0.00 0.00 2.32
5318 9583 4.323409 GCTTCTCAAGTCCTCTCCTGAAAT 60.323 45.833 0.00 0.00 0.00 2.17
5319 9584 3.007398 GCTTCTCAAGTCCTCTCCTGAAA 59.993 47.826 0.00 0.00 0.00 2.69
5320 9585 2.564947 GCTTCTCAAGTCCTCTCCTGAA 59.435 50.000 0.00 0.00 0.00 3.02
5321 9586 2.175202 GCTTCTCAAGTCCTCTCCTGA 58.825 52.381 0.00 0.00 0.00 3.86
5322 9587 2.178580 AGCTTCTCAAGTCCTCTCCTG 58.821 52.381 0.00 0.00 0.00 3.86
5323 9588 2.566724 CAAGCTTCTCAAGTCCTCTCCT 59.433 50.000 0.00 0.00 0.00 3.69
5324 9589 2.354604 CCAAGCTTCTCAAGTCCTCTCC 60.355 54.545 0.00 0.00 0.00 3.71
5325 9590 2.301583 ACCAAGCTTCTCAAGTCCTCTC 59.698 50.000 0.00 0.00 0.00 3.20
5326 9591 2.301583 GACCAAGCTTCTCAAGTCCTCT 59.698 50.000 0.00 0.00 0.00 3.69
5327 9592 2.301583 AGACCAAGCTTCTCAAGTCCTC 59.698 50.000 0.00 0.00 0.00 3.71
5328 9593 2.334023 AGACCAAGCTTCTCAAGTCCT 58.666 47.619 0.00 0.00 0.00 3.85
5329 9594 2.849294 AGACCAAGCTTCTCAAGTCC 57.151 50.000 0.00 0.00 0.00 3.85
5330 9595 4.336713 ACAAAAGACCAAGCTTCTCAAGTC 59.663 41.667 0.00 0.00 0.00 3.01
5331 9596 4.273318 ACAAAAGACCAAGCTTCTCAAGT 58.727 39.130 0.00 0.00 0.00 3.16
5332 9597 4.907879 ACAAAAGACCAAGCTTCTCAAG 57.092 40.909 0.00 0.00 0.00 3.02
5345 9610 5.596845 TGGCATTGGTTAGAAACAAAAGAC 58.403 37.500 0.00 0.00 0.00 3.01
5466 9735 0.391793 GAGTTGGCTGTAGGAGTGCC 60.392 60.000 0.00 0.00 46.26 5.01
5531 9801 2.631418 ACATCTGACGAACCTACACG 57.369 50.000 0.00 0.00 0.00 4.49
5541 9811 3.742882 TGAAGAAGCAGAAACATCTGACG 59.257 43.478 9.89 0.00 39.99 4.35
5718 9988 1.484038 TTGGCCCCATCAATGTAAGC 58.516 50.000 0.00 0.00 0.00 3.09
5732 10002 8.947055 AGAACATCATAATTAACATTTTGGCC 57.053 30.769 0.00 0.00 0.00 5.36
5931 10201 3.181473 GCATACAATGGGCACATGAACAT 60.181 43.478 0.00 0.00 37.40 2.71
5934 10204 2.689471 GAGCATACAATGGGCACATGAA 59.311 45.455 0.00 0.00 37.40 2.57
5985 10255 1.002087 CTCGTGCTGGTCTAACCCTTT 59.998 52.381 0.00 0.00 37.50 3.11
5986 10256 0.608640 CTCGTGCTGGTCTAACCCTT 59.391 55.000 0.00 0.00 37.50 3.95
5987 10257 1.889530 GCTCGTGCTGGTCTAACCCT 61.890 60.000 1.41 0.00 37.50 4.34
6000 10270 0.030504 TTGTGCCATTGTTGCTCGTG 59.969 50.000 0.00 0.00 0.00 4.35
6141 10411 9.748708 CTGAAAAGGAAATAGAAATTGTTGACA 57.251 29.630 0.00 0.00 0.00 3.58
6359 10633 4.079253 GAGGCTTTAAATCAGGTGAACCA 58.921 43.478 1.62 0.00 38.89 3.67
6361 10635 5.705609 TTGAGGCTTTAAATCAGGTGAAC 57.294 39.130 0.00 0.00 0.00 3.18
6433 10707 4.669206 TTTTGCAATCAAGGCTTTCTCA 57.331 36.364 0.00 0.00 33.12 3.27
6435 10709 4.753107 CACATTTTGCAATCAAGGCTTTCT 59.247 37.500 0.00 0.00 33.12 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.