Multiple sequence alignment - TraesCS3D01G192800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G192800 chr3D 100.000 6503 0 0 1 6503 182601668 182595166 0.000000e+00 12009.0
1 TraesCS3D01G192800 chr3D 92.308 52 4 0 2552 2603 572127474 572127423 2.510000e-09 75.0
2 TraesCS3D01G192800 chr3A 93.857 5909 185 76 680 6503 231676495 231670680 0.000000e+00 8737.0
3 TraesCS3D01G192800 chr3A 92.398 171 8 4 67 232 231676705 231676535 8.430000e-59 239.0
4 TraesCS3D01G192800 chr3A 89.474 57 6 0 2552 2608 41179389 41179445 9.040000e-09 73.1
5 TraesCS3D01G192800 chr3A 92.157 51 4 0 2552 2602 264939874 264939824 9.040000e-09 73.1
6 TraesCS3D01G192800 chr3A 86.667 60 8 0 2552 2611 697060297 697060238 4.210000e-07 67.6
7 TraesCS3D01G192800 chr3B 92.874 2582 92 37 3998 6503 261789764 261787199 0.000000e+00 3664.0
8 TraesCS3D01G192800 chr3B 90.867 646 26 15 667 1288 261793261 261792625 0.000000e+00 835.0
9 TraesCS3D01G192800 chr3B 83.713 921 99 24 2596 3488 261791298 261790401 0.000000e+00 822.0
10 TraesCS3D01G192800 chr3B 82.819 518 32 18 3518 3993 261790336 261789834 1.690000e-110 411.0
11 TraesCS3D01G192800 chr3B 81.086 571 56 22 1670 2234 261792222 261791698 6.070000e-110 409.0
12 TraesCS3D01G192800 chr3B 93.119 218 12 3 67 282 261793768 261793552 3.780000e-82 316.0
13 TraesCS3D01G192800 chr3B 88.584 219 21 2 2261 2476 261791516 261791299 5.000000e-66 263.0
14 TraesCS3D01G192800 chr3B 92.126 127 10 0 401 527 747533824 747533698 5.180000e-41 180.0
15 TraesCS3D01G192800 chr3B 94.643 56 2 1 3399 3453 261790403 261790348 1.160000e-12 86.1
16 TraesCS3D01G192800 chr3B 82.192 73 13 0 1553 1625 261792369 261792297 5.440000e-06 63.9
17 TraesCS3D01G192800 chr2A 76.518 494 96 18 4139 4621 779820726 779820242 1.080000e-62 252.0
18 TraesCS3D01G192800 chr2A 86.000 200 24 3 1075 1272 779822228 779822031 1.840000e-50 211.0
19 TraesCS3D01G192800 chr2A 100.000 34 0 0 2495 2528 16499508 16499541 5.440000e-06 63.9
20 TraesCS3D01G192800 chr2B 86.000 200 24 3 1075 1272 776811990 776812187 1.840000e-50 211.0
21 TraesCS3D01G192800 chr2B 90.625 128 10 2 401 527 215313436 215313562 1.120000e-37 169.0
22 TraesCS3D01G192800 chr2D 85.500 200 25 3 1075 1272 633847768 633847965 8.550000e-49 206.0
23 TraesCS3D01G192800 chr2D 90.909 132 12 0 398 529 89213060 89213191 1.860000e-40 178.0
24 TraesCS3D01G192800 chr2D 90.909 132 12 0 398 529 104888297 104888166 1.860000e-40 178.0
25 TraesCS3D01G192800 chr4B 91.603 131 11 0 399 529 59202088 59201958 1.440000e-41 182.0
26 TraesCS3D01G192800 chr1A 91.538 130 11 0 401 530 20744213 20744084 5.180000e-41 180.0
27 TraesCS3D01G192800 chr1A 97.222 36 1 0 2495 2530 23967722 23967687 1.960000e-05 62.1
28 TraesCS3D01G192800 chr6A 91.406 128 9 2 401 527 168123761 168123635 2.410000e-39 174.0
29 TraesCS3D01G192800 chr5B 91.339 127 11 0 401 527 254354958 254355084 2.410000e-39 174.0
30 TraesCS3D01G192800 chr5B 90.698 129 11 1 399 527 664383701 664383574 3.120000e-38 171.0
31 TraesCS3D01G192800 chr5A 87.931 58 6 1 2552 2608 694973877 694973934 4.210000e-07 67.6
32 TraesCS3D01G192800 chr7A 84.848 66 9 1 2552 2617 133053292 133053356 1.510000e-06 65.8
33 TraesCS3D01G192800 chr7A 77.419 124 19 6 2495 2610 704234593 704234471 1.510000e-06 65.8
34 TraesCS3D01G192800 chr7A 77.419 124 19 6 2495 2610 704255903 704255781 1.510000e-06 65.8
35 TraesCS3D01G192800 chr7D 95.000 40 2 0 2491 2530 397578599 397578560 5.440000e-06 63.9
36 TraesCS3D01G192800 chr5D 97.222 36 1 0 2495 2530 228554469 228554434 1.960000e-05 62.1
37 TraesCS3D01G192800 chr5D 97.222 36 1 0 2495 2530 526266609 526266644 1.960000e-05 62.1
38 TraesCS3D01G192800 chr4D 97.222 36 1 0 2495 2530 109275015 109275050 1.960000e-05 62.1
39 TraesCS3D01G192800 chr1D 97.222 36 1 0 2495 2530 120536312 120536277 1.960000e-05 62.1
40 TraesCS3D01G192800 chr1D 97.222 36 1 0 2495 2530 465887187 465887222 1.960000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G192800 chr3D 182595166 182601668 6502 True 12009.000000 12009 100.000000 1 6503 1 chr3D.!!$R1 6502
1 TraesCS3D01G192800 chr3A 231670680 231676705 6025 True 4488.000000 8737 93.127500 67 6503 2 chr3A.!!$R3 6436
2 TraesCS3D01G192800 chr3B 261787199 261793768 6569 True 763.333333 3664 87.766333 67 6503 9 chr3B.!!$R2 6436
3 TraesCS3D01G192800 chr2A 779820242 779822228 1986 True 231.500000 252 81.259000 1075 4621 2 chr2A.!!$R1 3546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 551 0.033796 TTCGGACGGAGGGAGTACAT 60.034 55.0 0.00 0.00 0.00 2.29 F
530 552 0.033796 TCGGACGGAGGGAGTACATT 60.034 55.0 0.00 0.00 0.00 2.71 F
1640 1845 0.103026 TTGTCGATGCGATCTCCCTG 59.897 55.0 0.00 0.00 38.42 4.45 F
1952 2197 0.951558 AACCAATGTTCCTGTGCGTC 59.048 50.0 0.00 0.00 0.00 5.19 F
2980 3626 0.877071 AGCTTGATTTGCACGTGGAG 59.123 50.0 18.88 2.22 0.00 3.86 F
3797 4517 0.878961 AGGCTCAACCGTTTGTCGTC 60.879 55.0 0.00 0.00 46.52 4.20 F
4591 5408 0.916358 AGGTACTTGGGGAGCATGCT 60.916 55.0 22.92 22.92 27.25 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2228 0.178995 TCCATTGGCAGTCACAAGCA 60.179 50.000 0.0 0.0 0.00 3.91 R
2020 2266 0.550914 TCAGTTGGTTGCCTGAGGTT 59.449 50.000 0.0 0.0 32.93 3.50 R
2892 3538 0.179062 ATCTTCTGCCATCTGTCGCC 60.179 55.000 0.0 0.0 0.00 5.54 R
3052 3698 0.180406 ACCACAAGCCGACAAACTCT 59.820 50.000 0.0 0.0 0.00 3.24 R
4150 4967 0.106167 TACGGATCTCTGGACCCTGG 60.106 60.000 0.0 0.0 0.00 4.45 R
5325 6152 1.139654 GCACTCAGCATAGGGATCACA 59.860 52.381 0.0 0.0 44.79 3.58 R
6467 7366 0.678048 GGTTCCACTCCCAGTGCATC 60.678 60.000 0.0 0.0 44.63 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.663196 AGCAAGTGGAGGCGTACC 59.337 61.111 0.00 0.00 34.54 3.34
18 19 2.813908 GCAAGTGGAGGCGTACCG 60.814 66.667 0.00 0.00 42.76 4.02
19 20 2.654877 CAAGTGGAGGCGTACCGT 59.345 61.111 0.00 0.00 42.76 4.83
20 21 1.736645 CAAGTGGAGGCGTACCGTG 60.737 63.158 0.00 0.00 42.76 4.94
21 22 2.939261 AAGTGGAGGCGTACCGTGG 61.939 63.158 0.00 0.00 42.76 4.94
22 23 3.376078 GTGGAGGCGTACCGTGGA 61.376 66.667 0.00 0.00 42.76 4.02
23 24 3.066190 TGGAGGCGTACCGTGGAG 61.066 66.667 0.00 0.00 42.76 3.86
24 25 4.509737 GGAGGCGTACCGTGGAGC 62.510 72.222 0.00 0.00 42.76 4.70
25 26 4.849329 GAGGCGTACCGTGGAGCG 62.849 72.222 0.00 0.00 42.76 5.03
31 32 4.444838 TACCGTGGAGCGCGCAAT 62.445 61.111 35.10 14.51 39.71 3.56
32 33 3.066233 TACCGTGGAGCGCGCAATA 62.066 57.895 35.10 15.77 39.71 1.90
33 34 2.947118 TACCGTGGAGCGCGCAATAG 62.947 60.000 35.10 19.20 39.71 1.73
34 35 2.885644 CGTGGAGCGCGCAATAGT 60.886 61.111 35.10 12.64 0.00 2.12
35 36 2.703409 GTGGAGCGCGCAATAGTG 59.297 61.111 35.10 0.00 0.00 2.74
57 58 6.316440 TGCAATACATTATGCATACCACAG 57.684 37.500 5.74 0.00 46.87 3.66
58 59 5.241285 TGCAATACATTATGCATACCACAGG 59.759 40.000 5.74 0.00 46.87 4.00
59 60 5.473162 GCAATACATTATGCATACCACAGGA 59.527 40.000 5.74 0.00 42.12 3.86
60 61 6.348786 GCAATACATTATGCATACCACAGGAG 60.349 42.308 5.74 0.00 42.12 3.69
61 62 4.778213 ACATTATGCATACCACAGGAGT 57.222 40.909 5.74 0.00 0.00 3.85
62 63 4.454678 ACATTATGCATACCACAGGAGTG 58.545 43.478 5.74 0.00 45.47 3.51
76 77 1.527433 GGAGTGGAGTGGCTTTTGGC 61.527 60.000 0.00 0.00 46.23 4.52
246 254 5.048294 TGAAGCTCTTCGTACATGTCTGTTA 60.048 40.000 0.00 0.00 42.28 2.41
249 257 4.794246 GCTCTTCGTACATGTCTGTTACTC 59.206 45.833 0.00 0.00 36.79 2.59
250 258 5.392165 GCTCTTCGTACATGTCTGTTACTCT 60.392 44.000 0.00 0.00 36.79 3.24
318 326 2.328819 TGCTTTGCTTTGTTGCCAAT 57.671 40.000 0.00 0.00 0.00 3.16
319 327 1.941294 TGCTTTGCTTTGTTGCCAATG 59.059 42.857 0.00 0.00 0.00 2.82
320 328 1.334329 GCTTTGCTTTGTTGCCAATGC 60.334 47.619 6.62 6.62 46.48 3.56
321 329 1.264826 CTTTGCTTTGTTGCCAATGCC 59.735 47.619 9.87 0.00 46.01 4.40
369 391 8.926715 AAAAAGTTCGGCATTCTATAATTTCC 57.073 30.769 0.00 0.00 0.00 3.13
370 392 6.635030 AAGTTCGGCATTCTATAATTTCCC 57.365 37.500 0.00 0.00 0.00 3.97
371 393 5.690865 AGTTCGGCATTCTATAATTTCCCA 58.309 37.500 0.00 0.00 0.00 4.37
396 418 0.251916 TCTTGGTAGAATGCACCCCG 59.748 55.000 0.00 0.00 34.99 5.73
397 419 0.035439 CTTGGTAGAATGCACCCCGT 60.035 55.000 0.00 0.00 34.99 5.28
398 420 1.208535 CTTGGTAGAATGCACCCCGTA 59.791 52.381 0.00 0.00 34.99 4.02
399 421 0.538118 TGGTAGAATGCACCCCGTAC 59.462 55.000 0.00 0.00 34.99 3.67
400 422 0.828677 GGTAGAATGCACCCCGTACT 59.171 55.000 0.00 0.00 0.00 2.73
401 423 2.034124 GGTAGAATGCACCCCGTACTA 58.966 52.381 0.00 0.00 0.00 1.82
403 425 1.861982 AGAATGCACCCCGTACTACT 58.138 50.000 0.00 0.00 0.00 2.57
404 426 1.755380 AGAATGCACCCCGTACTACTC 59.245 52.381 0.00 0.00 0.00 2.59
405 427 0.828677 AATGCACCCCGTACTACTCC 59.171 55.000 0.00 0.00 0.00 3.85
406 428 1.047034 ATGCACCCCGTACTACTCCC 61.047 60.000 0.00 0.00 0.00 4.30
408 430 0.974525 GCACCCCGTACTACTCCCTT 60.975 60.000 0.00 0.00 0.00 3.95
409 431 1.109609 CACCCCGTACTACTCCCTTC 58.890 60.000 0.00 0.00 0.00 3.46
410 432 0.706433 ACCCCGTACTACTCCCTTCA 59.294 55.000 0.00 0.00 0.00 3.02
411 433 1.290130 ACCCCGTACTACTCCCTTCAT 59.710 52.381 0.00 0.00 0.00 2.57
412 434 1.962100 CCCCGTACTACTCCCTTCATC 59.038 57.143 0.00 0.00 0.00 2.92
413 435 1.962100 CCCGTACTACTCCCTTCATCC 59.038 57.143 0.00 0.00 0.00 3.51
414 436 2.662866 CCGTACTACTCCCTTCATCCA 58.337 52.381 0.00 0.00 0.00 3.41
416 438 3.552875 CGTACTACTCCCTTCATCCAGA 58.447 50.000 0.00 0.00 0.00 3.86
417 439 3.952323 CGTACTACTCCCTTCATCCAGAA 59.048 47.826 0.00 0.00 34.41 3.02
418 440 4.401519 CGTACTACTCCCTTCATCCAGAAA 59.598 45.833 0.00 0.00 35.40 2.52
423 445 6.674419 ACTACTCCCTTCATCCAGAAATACTT 59.326 38.462 0.00 0.00 35.40 2.24
426 448 5.745227 TCCCTTCATCCAGAAATACTTGTC 58.255 41.667 0.00 0.00 35.40 3.18
427 449 5.250543 TCCCTTCATCCAGAAATACTTGTCA 59.749 40.000 0.00 0.00 35.40 3.58
429 451 6.261826 CCCTTCATCCAGAAATACTTGTCATC 59.738 42.308 0.00 0.00 35.40 2.92
431 453 7.337689 CCTTCATCCAGAAATACTTGTCATCAA 59.662 37.037 0.00 0.00 35.40 2.57
433 455 8.634335 TCATCCAGAAATACTTGTCATCAAAA 57.366 30.769 0.00 0.00 32.87 2.44
434 456 8.514594 TCATCCAGAAATACTTGTCATCAAAAC 58.485 33.333 0.00 0.00 32.87 2.43
435 457 6.898041 TCCAGAAATACTTGTCATCAAAACG 58.102 36.000 0.00 0.00 32.87 3.60
436 458 6.708502 TCCAGAAATACTTGTCATCAAAACGA 59.291 34.615 0.00 0.00 32.87 3.85
437 459 7.227711 TCCAGAAATACTTGTCATCAAAACGAA 59.772 33.333 0.00 0.00 32.87 3.85
438 460 8.023128 CCAGAAATACTTGTCATCAAAACGAAT 58.977 33.333 0.00 0.00 32.87 3.34
444 466 9.840427 ATACTTGTCATCAAAACGAATAAAAGG 57.160 29.630 0.00 0.00 32.87 3.11
445 467 7.145323 ACTTGTCATCAAAACGAATAAAAGGG 58.855 34.615 0.00 0.00 32.87 3.95
446 468 6.019779 TGTCATCAAAACGAATAAAAGGGG 57.980 37.500 0.00 0.00 0.00 4.79
447 469 5.770663 TGTCATCAAAACGAATAAAAGGGGA 59.229 36.000 0.00 0.00 0.00 4.81
448 470 6.435904 TGTCATCAAAACGAATAAAAGGGGAT 59.564 34.615 0.00 0.00 0.00 3.85
449 471 6.751888 GTCATCAAAACGAATAAAAGGGGATG 59.248 38.462 0.00 0.00 0.00 3.51
450 472 6.435904 TCATCAAAACGAATAAAAGGGGATGT 59.564 34.615 0.00 0.00 32.47 3.06
451 473 7.612244 TCATCAAAACGAATAAAAGGGGATGTA 59.388 33.333 0.00 0.00 32.47 2.29
452 474 7.948034 TCAAAACGAATAAAAGGGGATGTAT 57.052 32.000 0.00 0.00 0.00 2.29
453 475 8.356000 TCAAAACGAATAAAAGGGGATGTATT 57.644 30.769 0.00 0.00 0.00 1.89
454 476 8.808092 TCAAAACGAATAAAAGGGGATGTATTT 58.192 29.630 0.00 0.00 0.00 1.40
455 477 9.430623 CAAAACGAATAAAAGGGGATGTATTTT 57.569 29.630 0.00 0.00 0.00 1.82
456 478 8.996024 AAACGAATAAAAGGGGATGTATTTTG 57.004 30.769 0.00 0.00 0.00 2.44
457 479 7.948034 ACGAATAAAAGGGGATGTATTTTGA 57.052 32.000 0.00 0.00 0.00 2.69
458 480 8.533569 ACGAATAAAAGGGGATGTATTTTGAT 57.466 30.769 0.00 0.00 0.00 2.57
459 481 8.413229 ACGAATAAAAGGGGATGTATTTTGATG 58.587 33.333 0.00 0.00 0.00 3.07
460 482 8.413229 CGAATAAAAGGGGATGTATTTTGATGT 58.587 33.333 0.00 0.00 0.00 3.06
467 489 9.889128 AAGGGGATGTATTTTGATGTATTTTTG 57.111 29.630 0.00 0.00 0.00 2.44
468 490 9.045745 AGGGGATGTATTTTGATGTATTTTTGT 57.954 29.630 0.00 0.00 0.00 2.83
469 491 9.665719 GGGGATGTATTTTGATGTATTTTTGTT 57.334 29.630 0.00 0.00 0.00 2.83
501 523 8.905660 ACATTCATTTTTGTCCATTTTGATGA 57.094 26.923 0.00 0.00 0.00 2.92
502 524 8.776470 ACATTCATTTTTGTCCATTTTGATGAC 58.224 29.630 0.00 0.00 0.00 3.06
503 525 8.775527 CATTCATTTTTGTCCATTTTGATGACA 58.224 29.630 0.00 0.00 0.00 3.58
504 526 8.728337 TTCATTTTTGTCCATTTTGATGACAA 57.272 26.923 0.00 0.00 34.47 3.18
505 527 8.367943 TCATTTTTGTCCATTTTGATGACAAG 57.632 30.769 0.00 0.00 37.13 3.16
506 528 7.986320 TCATTTTTGTCCATTTTGATGACAAGT 59.014 29.630 0.00 0.00 37.13 3.16
507 529 9.258826 CATTTTTGTCCATTTTGATGACAAGTA 57.741 29.630 0.00 0.00 37.13 2.24
509 531 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
510 532 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
511 533 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
512 534 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
513 535 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
514 536 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
515 537 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
516 538 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
517 539 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
518 540 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
519 541 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
520 542 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
521 543 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
522 544 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
523 545 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
524 546 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
525 547 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
526 548 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
527 549 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
528 550 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
529 551 0.033796 TTCGGACGGAGGGAGTACAT 60.034 55.000 0.00 0.00 0.00 2.29
530 552 0.033796 TCGGACGGAGGGAGTACATT 60.034 55.000 0.00 0.00 0.00 2.71
531 553 0.384669 CGGACGGAGGGAGTACATTC 59.615 60.000 0.00 0.00 0.00 2.67
532 554 0.384669 GGACGGAGGGAGTACATTCG 59.615 60.000 0.00 0.00 0.00 3.34
533 555 0.248949 GACGGAGGGAGTACATTCGC 60.249 60.000 0.00 0.00 0.00 4.70
534 556 0.968901 ACGGAGGGAGTACATTCGCA 60.969 55.000 0.00 0.00 32.87 5.10
535 557 0.174845 CGGAGGGAGTACATTCGCAA 59.825 55.000 0.00 0.00 32.87 4.85
536 558 1.202533 CGGAGGGAGTACATTCGCAAT 60.203 52.381 0.00 0.00 32.87 3.56
537 559 2.213499 GGAGGGAGTACATTCGCAATG 58.787 52.381 0.00 7.16 44.48 2.82
538 560 1.599542 GAGGGAGTACATTCGCAATGC 59.400 52.381 0.00 0.00 42.69 3.56
539 561 1.065491 AGGGAGTACATTCGCAATGCA 60.065 47.619 5.91 0.00 42.69 3.96
540 562 1.742831 GGGAGTACATTCGCAATGCAA 59.257 47.619 5.91 0.00 42.69 4.08
541 563 2.358898 GGGAGTACATTCGCAATGCAAT 59.641 45.455 5.91 1.59 42.69 3.56
542 564 3.365832 GGAGTACATTCGCAATGCAATG 58.634 45.455 20.52 20.52 42.69 2.82
543 565 2.785477 GAGTACATTCGCAATGCAATGC 59.215 45.455 16.99 16.99 42.69 3.56
544 566 2.164017 AGTACATTCGCAATGCAATGCA 59.836 40.909 25.49 11.44 46.76 3.96
545 567 1.352114 ACATTCGCAATGCAATGCAC 58.648 45.000 25.49 0.00 46.76 4.57
546 568 0.296349 CATTCGCAATGCAATGCACG 59.704 50.000 25.49 10.45 46.76 5.34
547 569 0.802994 ATTCGCAATGCAATGCACGG 60.803 50.000 25.49 10.37 46.76 4.94
548 570 2.126385 CGCAATGCAATGCACGGT 60.126 55.556 25.49 0.00 46.76 4.83
549 571 2.438148 CGCAATGCAATGCACGGTG 61.438 57.895 25.49 10.49 46.76 4.94
550 572 1.373246 GCAATGCAATGCACGGTGT 60.373 52.632 21.74 0.00 45.70 4.16
551 573 0.109365 GCAATGCAATGCACGGTGTA 60.109 50.000 21.74 5.57 45.70 2.90
552 574 1.616620 CAATGCAATGCACGGTGTAC 58.383 50.000 11.23 0.00 43.04 2.90
570 592 7.996002 CGGTGTACGTATATAACACAAATACC 58.004 38.462 17.66 2.38 44.18 2.73
599 621 4.589216 TTTTCAAGATGGGTGCTCAAAG 57.411 40.909 0.00 0.00 0.00 2.77
607 629 0.733150 GGGTGCTCAAAGCCGAATAC 59.267 55.000 0.00 0.00 41.51 1.89
609 631 1.398390 GGTGCTCAAAGCCGAATACAG 59.602 52.381 0.00 0.00 41.51 2.74
610 632 1.086696 TGCTCAAAGCCGAATACAGC 58.913 50.000 0.00 0.00 41.51 4.40
611 633 1.086696 GCTCAAAGCCGAATACAGCA 58.913 50.000 0.00 0.00 34.48 4.41
612 634 1.468520 GCTCAAAGCCGAATACAGCAA 59.531 47.619 0.00 0.00 34.48 3.91
613 635 2.476854 GCTCAAAGCCGAATACAGCAAG 60.477 50.000 0.00 0.00 34.48 4.01
614 636 2.083774 TCAAAGCCGAATACAGCAAGG 58.916 47.619 0.00 0.00 0.00 3.61
615 637 2.083774 CAAAGCCGAATACAGCAAGGA 58.916 47.619 0.00 0.00 0.00 3.36
616 638 2.684881 CAAAGCCGAATACAGCAAGGAT 59.315 45.455 0.00 0.00 0.00 3.24
617 639 3.838244 AAGCCGAATACAGCAAGGATA 57.162 42.857 0.00 0.00 0.00 2.59
618 640 3.113260 AGCCGAATACAGCAAGGATAC 57.887 47.619 0.00 0.00 0.00 2.24
619 641 2.434336 AGCCGAATACAGCAAGGATACA 59.566 45.455 0.00 0.00 41.41 2.29
620 642 2.544267 GCCGAATACAGCAAGGATACAC 59.456 50.000 0.00 0.00 41.41 2.90
621 643 3.131396 CCGAATACAGCAAGGATACACC 58.869 50.000 0.00 0.00 41.41 4.16
623 645 3.181465 CGAATACAGCAAGGATACACCCT 60.181 47.826 0.00 0.00 40.05 4.34
624 646 4.683400 CGAATACAGCAAGGATACACCCTT 60.683 45.833 0.00 0.00 46.91 3.95
642 664 5.185635 CACCCTTAAAAGATGCTTGAATGGA 59.814 40.000 0.00 0.00 0.00 3.41
643 665 5.185828 ACCCTTAAAAGATGCTTGAATGGAC 59.814 40.000 0.00 0.00 0.00 4.02
644 666 5.185635 CCCTTAAAAGATGCTTGAATGGACA 59.814 40.000 0.00 0.00 0.00 4.02
645 667 6.095377 CCTTAAAAGATGCTTGAATGGACAC 58.905 40.000 0.00 0.00 0.00 3.67
646 668 6.071728 CCTTAAAAGATGCTTGAATGGACACT 60.072 38.462 0.00 0.00 0.00 3.55
647 669 5.382618 AAAAGATGCTTGAATGGACACTC 57.617 39.130 0.00 0.00 0.00 3.51
648 670 3.708403 AGATGCTTGAATGGACACTCA 57.292 42.857 0.00 0.00 0.00 3.41
649 671 3.607741 AGATGCTTGAATGGACACTCAG 58.392 45.455 0.00 0.00 0.00 3.35
652 674 3.819368 TGCTTGAATGGACACTCAGAAA 58.181 40.909 0.00 0.00 0.00 2.52
653 675 4.206375 TGCTTGAATGGACACTCAGAAAA 58.794 39.130 0.00 0.00 0.00 2.29
654 676 4.644234 TGCTTGAATGGACACTCAGAAAAA 59.356 37.500 0.00 0.00 0.00 1.94
725 804 1.364901 CTGGCTGGCAGTGGTTTTG 59.635 57.895 21.84 0.00 0.00 2.44
726 805 1.076412 TGGCTGGCAGTGGTTTTGA 60.076 52.632 17.16 0.00 0.00 2.69
727 806 1.363807 GGCTGGCAGTGGTTTTGAC 59.636 57.895 17.16 0.00 0.00 3.18
729 808 1.654220 CTGGCAGTGGTTTTGACCG 59.346 57.895 6.28 0.00 0.00 4.79
735 819 1.057851 AGTGGTTTTGACCGGGGAGA 61.058 55.000 6.32 0.00 0.00 3.71
750 844 0.750182 GGAGAGAGAGAGACCACCGG 60.750 65.000 0.00 0.00 0.00 5.28
752 846 2.363147 AGAGAGAGACCACCGGCC 60.363 66.667 0.00 0.00 0.00 6.13
753 847 3.827898 GAGAGAGACCACCGGCCG 61.828 72.222 21.04 21.04 0.00 6.13
764 858 2.248835 ACCGGCCGCGCATTATTAC 61.249 57.895 22.85 0.00 0.00 1.89
774 868 1.235724 GCATTATTACTCACCCCGCC 58.764 55.000 0.00 0.00 0.00 6.13
846 945 3.441500 ACACTTTCCCTCCTTTCCATC 57.558 47.619 0.00 0.00 0.00 3.51
849 948 1.007607 TTTCCCTCCTTTCCATCCCC 58.992 55.000 0.00 0.00 0.00 4.81
850 949 0.924226 TTCCCTCCTTTCCATCCCCC 60.924 60.000 0.00 0.00 0.00 5.40
959 1074 3.103890 GAATCCCCACCCCTCCCC 61.104 72.222 0.00 0.00 0.00 4.81
1098 1216 3.685214 GATCGTCTGCACGCTCGGT 62.685 63.158 0.00 0.00 46.28 4.69
1282 1406 0.842467 CACCAAGGTCCCTCCCTTCT 60.842 60.000 0.00 0.00 43.04 2.85
1332 1461 1.081774 CTCGCCGATCCGATCTGTC 60.082 63.158 6.81 0.00 36.54 3.51
1421 1555 5.417266 TGGGCATCTTTTCATCGTTGATTTA 59.583 36.000 0.00 0.00 0.00 1.40
1425 1559 8.323140 GGCATCTTTTCATCGTTGATTTATTTG 58.677 33.333 0.00 0.00 0.00 2.32
1513 1663 2.200092 TGGGCTTGGTTGGGGTTC 59.800 61.111 0.00 0.00 0.00 3.62
1514 1664 2.989253 GGGCTTGGTTGGGGTTCG 60.989 66.667 0.00 0.00 0.00 3.95
1515 1665 3.680786 GGCTTGGTTGGGGTTCGC 61.681 66.667 0.00 0.00 0.00 4.70
1516 1666 2.597510 GCTTGGTTGGGGTTCGCT 60.598 61.111 0.00 0.00 0.00 4.93
1517 1667 2.626780 GCTTGGTTGGGGTTCGCTC 61.627 63.158 0.00 0.00 0.00 5.03
1518 1668 1.971695 CTTGGTTGGGGTTCGCTCC 60.972 63.158 0.00 0.00 38.58 4.70
1532 1682 3.299340 TCGCTCCAGTGTTTTCTCTAC 57.701 47.619 0.00 0.00 0.00 2.59
1535 1685 4.156190 TCGCTCCAGTGTTTTCTCTACTAG 59.844 45.833 0.00 0.00 0.00 2.57
1539 1689 6.151480 GCTCCAGTGTTTTCTCTACTAGTACT 59.849 42.308 0.00 0.00 0.00 2.73
1540 1690 7.336427 GCTCCAGTGTTTTCTCTACTAGTACTA 59.664 40.741 1.89 1.89 0.00 1.82
1541 1691 8.558973 TCCAGTGTTTTCTCTACTAGTACTAC 57.441 38.462 0.00 0.00 0.00 2.73
1543 1693 8.667463 CCAGTGTTTTCTCTACTAGTACTACTC 58.333 40.741 0.00 0.00 0.00 2.59
1544 1694 8.667463 CAGTGTTTTCTCTACTAGTACTACTCC 58.333 40.741 0.00 0.00 0.00 3.85
1547 1697 9.883142 TGTTTTCTCTACTAGTACTACTCCTAC 57.117 37.037 0.00 0.00 0.00 3.18
1610 1815 5.484998 AGGGGTTATTACTCGTCTTTGGTTA 59.515 40.000 0.00 0.00 0.00 2.85
1640 1845 0.103026 TTGTCGATGCGATCTCCCTG 59.897 55.000 0.00 0.00 38.42 4.45
1641 1846 1.663074 GTCGATGCGATCTCCCTGC 60.663 63.158 0.00 0.00 38.42 4.85
1643 1848 1.227350 CGATGCGATCTCCCTGCAA 60.227 57.895 0.00 0.00 42.65 4.08
1713 1948 4.201910 GCAGGCAATTAAAGCGACAGATTA 60.202 41.667 0.00 0.00 0.00 1.75
1714 1949 5.505286 CAGGCAATTAAAGCGACAGATTAG 58.495 41.667 0.00 0.00 0.00 1.73
1722 1957 4.895224 AAGCGACAGATTAGACACGATA 57.105 40.909 0.00 0.00 0.00 2.92
1823 2058 1.204146 ATCGAATGGGCCAGTGTAGT 58.796 50.000 13.03 0.00 0.00 2.73
1824 2059 1.855295 TCGAATGGGCCAGTGTAGTA 58.145 50.000 13.03 0.00 0.00 1.82
1825 2060 1.754803 TCGAATGGGCCAGTGTAGTAG 59.245 52.381 13.03 0.00 0.00 2.57
1827 2062 2.691526 CGAATGGGCCAGTGTAGTAGTA 59.308 50.000 13.03 0.00 0.00 1.82
1828 2063 3.131577 CGAATGGGCCAGTGTAGTAGTAA 59.868 47.826 13.03 0.00 0.00 2.24
1829 2064 4.202223 CGAATGGGCCAGTGTAGTAGTAAT 60.202 45.833 13.03 0.00 0.00 1.89
1830 2065 4.689612 ATGGGCCAGTGTAGTAGTAATG 57.310 45.455 13.78 0.00 0.00 1.90
1832 2067 4.612401 TGGGCCAGTGTAGTAGTAATGTA 58.388 43.478 0.00 0.00 0.00 2.29
1833 2068 4.647853 TGGGCCAGTGTAGTAGTAATGTAG 59.352 45.833 0.00 0.00 0.00 2.74
1939 2183 1.180029 GTCCTCATGCTGCAACCAAT 58.820 50.000 6.36 0.00 0.00 3.16
1952 2197 0.951558 AACCAATGTTCCTGTGCGTC 59.048 50.000 0.00 0.00 0.00 5.19
1962 2207 3.347958 TCCTGTGCGTCAATTTGTTTC 57.652 42.857 0.00 0.00 0.00 2.78
1974 2219 5.119434 GTCAATTTGTTTCGTTTGTTGTGGT 59.881 36.000 0.00 0.00 0.00 4.16
1981 2226 5.066117 TGTTTCGTTTGTTGTGGTATGCTTA 59.934 36.000 0.00 0.00 0.00 3.09
1982 2227 5.752892 TTCGTTTGTTGTGGTATGCTTAA 57.247 34.783 0.00 0.00 0.00 1.85
1983 2228 5.950758 TCGTTTGTTGTGGTATGCTTAAT 57.049 34.783 0.00 0.00 0.00 1.40
1984 2229 5.694816 TCGTTTGTTGTGGTATGCTTAATG 58.305 37.500 0.00 0.00 0.00 1.90
2003 2248 0.961019 GCTTGTGACTGCCAATGGAA 59.039 50.000 2.05 0.00 0.00 3.53
2004 2249 1.068055 GCTTGTGACTGCCAATGGAAG 60.068 52.381 5.53 5.53 33.65 3.46
2006 2251 2.189594 TGTGACTGCCAATGGAAGAG 57.810 50.000 15.62 2.98 31.36 2.85
2007 2252 1.421268 TGTGACTGCCAATGGAAGAGT 59.579 47.619 15.62 6.51 31.36 3.24
2008 2253 2.637382 TGTGACTGCCAATGGAAGAGTA 59.363 45.455 15.62 0.00 31.36 2.59
2017 2263 7.880195 ACTGCCAATGGAAGAGTATGTATTATC 59.120 37.037 15.62 0.00 31.36 1.75
2020 2266 8.540388 GCCAATGGAAGAGTATGTATTATCCTA 58.460 37.037 2.05 0.00 0.00 2.94
2141 2387 9.273137 AGCCAAAGTGTAATATATATAGCTCCT 57.727 33.333 0.00 0.00 0.00 3.69
2297 2912 6.345250 GCTGCAACAAATTATATGAATGACGC 60.345 38.462 0.00 0.00 0.00 5.19
2487 3107 4.096081 CACAGTAAACTAGTACTCCCTCCG 59.904 50.000 0.00 0.00 31.78 4.63
2657 3277 4.581824 TGACTAAACCGTACTGTCAGAACT 59.418 41.667 6.91 0.00 33.45 3.01
2839 3485 4.488126 TGCTGCTTGTGTATGTCTTTTC 57.512 40.909 0.00 0.00 0.00 2.29
2887 3533 4.718940 AGTATGGTAAATTTGCCAGCAC 57.281 40.909 28.34 25.80 46.11 4.40
2890 3536 3.658757 TGGTAAATTTGCCAGCACTTC 57.341 42.857 22.45 0.00 38.05 3.01
2892 3538 3.005684 TGGTAAATTTGCCAGCACTTCAG 59.994 43.478 22.45 0.00 38.05 3.02
2980 3626 0.877071 AGCTTGATTTGCACGTGGAG 59.123 50.000 18.88 2.22 0.00 3.86
2984 3630 3.705604 CTTGATTTGCACGTGGAGTTTT 58.294 40.909 18.88 0.01 0.00 2.43
3013 3659 7.994911 ACTGAGTTGATCAATATGGAGCAATAA 59.005 33.333 13.70 2.83 44.03 1.40
3052 3698 2.559698 TTGGCTAGCTTGCTGTTGTA 57.440 45.000 19.45 0.00 0.00 2.41
3099 3745 2.030185 TGTACAGCGAGAGTTTCTGACC 60.030 50.000 0.00 0.00 0.00 4.02
3373 4024 2.284417 GGTTATCGCGACCATGTTTCTC 59.716 50.000 12.93 0.00 37.14 2.87
3454 4117 2.386661 TTCTTCTCTTGCGGATCACC 57.613 50.000 0.00 0.00 0.00 4.02
3603 4302 5.185454 TCAGTTAGGATCAAATGCGAATGT 58.815 37.500 0.00 0.00 0.00 2.71
3732 4452 7.571428 GCGGCTTTCTGGTATATATGTTTCTTC 60.571 40.741 0.00 0.00 0.00 2.87
3797 4517 0.878961 AGGCTCAACCGTTTGTCGTC 60.879 55.000 0.00 0.00 46.52 4.20
3850 4570 9.535170 TTTTATCAAGGTGGGTAATGTATTTGA 57.465 29.630 0.00 0.00 0.00 2.69
4073 4890 4.627467 CCTCTTACGTGTCAAATGGAGAAG 59.373 45.833 0.00 0.00 0.00 2.85
4110 4927 6.685527 TTGTGTACACTTGTTTGCTTGATA 57.314 33.333 25.60 0.00 0.00 2.15
4149 4966 9.739276 TCAGATACTCATTGGTTTTCTACATTT 57.261 29.630 0.00 0.00 0.00 2.32
4150 4967 9.994432 CAGATACTCATTGGTTTTCTACATTTC 57.006 33.333 0.00 0.00 0.00 2.17
4591 5408 0.916358 AGGTACTTGGGGAGCATGCT 60.916 55.000 22.92 22.92 27.25 3.79
4920 5747 1.634702 CTACTCGAGCTGAAGCAACC 58.365 55.000 13.61 0.00 45.16 3.77
5070 5897 7.078228 GTGTGGACTATTCTGCTGTTTTTAAG 58.922 38.462 0.00 0.00 0.00 1.85
5325 6152 1.065418 CAAAGCCTTATCGTGAGGGGT 60.065 52.381 4.22 0.00 34.75 4.95
5647 6485 6.264292 TGTGTTATCAAGTTGTGGCTGTTTAT 59.736 34.615 2.11 0.00 0.00 1.40
5833 6691 5.705397 TCTCAAGATGGTGAAGGATGATT 57.295 39.130 0.00 0.00 0.00 2.57
5834 6692 5.434408 TCTCAAGATGGTGAAGGATGATTG 58.566 41.667 0.00 0.00 0.00 2.67
5837 6695 6.720309 TCAAGATGGTGAAGGATGATTGTTA 58.280 36.000 0.00 0.00 0.00 2.41
5838 6696 7.348815 TCAAGATGGTGAAGGATGATTGTTAT 58.651 34.615 0.00 0.00 0.00 1.89
5840 6698 8.562892 CAAGATGGTGAAGGATGATTGTTATAC 58.437 37.037 0.00 0.00 0.00 1.47
5862 6729 8.825667 ATACAATAAAAGCGTTTGGTCAATTT 57.174 26.923 7.95 0.00 0.00 1.82
5874 6741 2.627699 TGGTCAATTTTGCCCAGACTTC 59.372 45.455 0.00 0.00 30.09 3.01
5876 6743 3.057245 GGTCAATTTTGCCCAGACTTCTC 60.057 47.826 0.00 0.00 0.00 2.87
5878 6745 4.037923 GTCAATTTTGCCCAGACTTCTCAA 59.962 41.667 0.00 0.00 0.00 3.02
5884 6751 2.297033 TGCCCAGACTTCTCAATTTTGC 59.703 45.455 0.00 0.00 0.00 3.68
5886 6753 2.232208 CCCAGACTTCTCAATTTTGCCC 59.768 50.000 0.00 0.00 0.00 5.36
5887 6754 2.892852 CCAGACTTCTCAATTTTGCCCA 59.107 45.455 0.00 0.00 0.00 5.36
5888 6755 3.057033 CCAGACTTCTCAATTTTGCCCAG 60.057 47.826 0.00 0.00 0.00 4.45
5889 6756 3.822735 CAGACTTCTCAATTTTGCCCAGA 59.177 43.478 0.00 0.00 0.00 3.86
5890 6757 4.461781 CAGACTTCTCAATTTTGCCCAGAT 59.538 41.667 0.00 0.00 0.00 2.90
5891 6758 5.047519 CAGACTTCTCAATTTTGCCCAGATT 60.048 40.000 0.00 0.00 0.00 2.40
5892 6759 6.151648 CAGACTTCTCAATTTTGCCCAGATTA 59.848 38.462 0.00 0.00 0.00 1.75
6019 6896 2.347697 TGACCGATTCACACGAAGAG 57.652 50.000 0.00 0.00 33.74 2.85
6020 6897 1.883926 TGACCGATTCACACGAAGAGA 59.116 47.619 0.00 0.00 33.74 3.10
6021 6898 2.251893 GACCGATTCACACGAAGAGAC 58.748 52.381 0.00 0.00 33.74 3.36
6022 6899 1.611977 ACCGATTCACACGAAGAGACA 59.388 47.619 0.00 0.00 33.74 3.41
6023 6900 2.254459 CCGATTCACACGAAGAGACAG 58.746 52.381 0.00 0.00 33.74 3.51
6080 6961 1.175654 TGCGTTCGTGGTAGGTATGA 58.824 50.000 0.00 0.00 0.00 2.15
6092 6977 2.260844 AGGTATGACAATGGCATCCG 57.739 50.000 4.14 0.00 0.00 4.18
6166 7062 1.673168 GAAGTGGAGGATGGTGATGC 58.327 55.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.663196 GGTACGCCTCCACTTGCT 59.337 61.111 0.00 0.00 0.00 3.91
14 15 2.947118 CTATTGCGCGCTCCACGGTA 62.947 60.000 33.29 5.92 43.93 4.02
15 16 4.444838 TATTGCGCGCTCCACGGT 62.445 61.111 33.29 12.04 43.93 4.83
16 17 3.630148 CTATTGCGCGCTCCACGG 61.630 66.667 33.29 13.26 43.93 4.94
18 19 2.703409 CACTATTGCGCGCTCCAC 59.297 61.111 33.29 2.60 0.00 4.02
19 20 3.195002 GCACTATTGCGCGCTCCA 61.195 61.111 33.29 16.72 39.50 3.86
28 29 8.513774 TGGTATGCATAATGTATTGCACTATTG 58.486 33.333 8.28 0.00 40.25 1.90
29 30 8.514594 GTGGTATGCATAATGTATTGCACTATT 58.485 33.333 8.28 0.00 40.25 1.73
30 31 7.665145 TGTGGTATGCATAATGTATTGCACTAT 59.335 33.333 8.28 0.00 40.25 2.12
31 32 6.995091 TGTGGTATGCATAATGTATTGCACTA 59.005 34.615 8.28 0.00 40.25 2.74
32 33 5.827267 TGTGGTATGCATAATGTATTGCACT 59.173 36.000 8.28 0.00 40.25 4.40
33 34 6.070897 TGTGGTATGCATAATGTATTGCAC 57.929 37.500 8.28 0.00 40.25 4.57
34 35 5.241285 CCTGTGGTATGCATAATGTATTGCA 59.759 40.000 8.28 0.00 41.73 4.08
35 36 5.473162 TCCTGTGGTATGCATAATGTATTGC 59.527 40.000 8.28 0.00 0.00 3.56
36 37 6.712095 ACTCCTGTGGTATGCATAATGTATTG 59.288 38.462 8.28 0.00 0.00 1.90
37 38 6.712095 CACTCCTGTGGTATGCATAATGTATT 59.288 38.462 8.28 0.00 40.33 1.89
38 39 6.233434 CACTCCTGTGGTATGCATAATGTAT 58.767 40.000 8.28 0.00 40.33 2.29
39 40 5.610398 CACTCCTGTGGTATGCATAATGTA 58.390 41.667 8.28 0.00 40.33 2.29
40 41 4.454678 CACTCCTGTGGTATGCATAATGT 58.545 43.478 8.28 0.00 40.33 2.71
53 54 0.109342 AAAGCCACTCCACTCCTGTG 59.891 55.000 0.00 0.00 43.45 3.66
54 55 0.846693 AAAAGCCACTCCACTCCTGT 59.153 50.000 0.00 0.00 0.00 4.00
55 56 1.242076 CAAAAGCCACTCCACTCCTG 58.758 55.000 0.00 0.00 0.00 3.86
56 57 0.111253 CCAAAAGCCACTCCACTCCT 59.889 55.000 0.00 0.00 0.00 3.69
57 58 1.527433 GCCAAAAGCCACTCCACTCC 61.527 60.000 0.00 0.00 34.35 3.85
58 59 1.856265 CGCCAAAAGCCACTCCACTC 61.856 60.000 0.00 0.00 38.78 3.51
59 60 1.898574 CGCCAAAAGCCACTCCACT 60.899 57.895 0.00 0.00 38.78 4.00
60 61 1.452145 TTCGCCAAAAGCCACTCCAC 61.452 55.000 0.00 0.00 38.78 4.02
61 62 1.152860 TTCGCCAAAAGCCACTCCA 60.153 52.632 0.00 0.00 38.78 3.86
62 63 1.581447 CTTCGCCAAAAGCCACTCC 59.419 57.895 0.00 0.00 38.78 3.85
63 64 1.172812 ACCTTCGCCAAAAGCCACTC 61.173 55.000 0.00 0.00 38.78 3.51
64 65 1.152756 ACCTTCGCCAAAAGCCACT 60.153 52.632 0.00 0.00 38.78 4.00
65 66 1.285950 GACCTTCGCCAAAAGCCAC 59.714 57.895 0.00 0.00 38.78 5.01
76 77 2.863153 CTTGCCTTGCGACCTTCG 59.137 61.111 0.00 0.00 43.89 3.79
177 184 0.178990 AGAAGGGGCAAAGCGAAACT 60.179 50.000 0.00 0.00 0.00 2.66
246 254 6.500910 GGTCGTTTTCAAAATTTGGTAGAGT 58.499 36.000 5.83 0.00 0.00 3.24
249 257 4.147479 GCGGTCGTTTTCAAAATTTGGTAG 59.853 41.667 5.83 0.00 0.00 3.18
250 258 4.043073 GCGGTCGTTTTCAAAATTTGGTA 58.957 39.130 5.83 0.00 0.00 3.25
282 290 1.134848 AGCAAAGCTTCCACGCAAAAA 60.135 42.857 0.00 0.00 33.89 1.94
283 291 0.459489 AGCAAAGCTTCCACGCAAAA 59.541 45.000 0.00 0.00 33.89 2.44
284 292 0.459489 AAGCAAAGCTTCCACGCAAA 59.541 45.000 0.00 0.00 46.77 3.68
285 293 2.114638 AAGCAAAGCTTCCACGCAA 58.885 47.368 0.00 0.00 46.77 4.85
286 294 3.840437 AAGCAAAGCTTCCACGCA 58.160 50.000 0.00 0.00 46.77 5.24
319 327 2.742053 TCGAGTTGTAAATGCTGAAGGC 59.258 45.455 0.00 0.00 42.22 4.35
320 328 5.356882 TTTCGAGTTGTAAATGCTGAAGG 57.643 39.130 0.00 0.00 0.00 3.46
346 368 6.605594 TGGGAAATTATAGAATGCCGAACTTT 59.394 34.615 0.00 0.00 0.00 2.66
348 370 5.690865 TGGGAAATTATAGAATGCCGAACT 58.309 37.500 0.00 0.00 0.00 3.01
350 372 6.303054 TGATGGGAAATTATAGAATGCCGAA 58.697 36.000 0.00 0.00 0.00 4.30
385 407 1.202498 GGAGTAGTACGGGGTGCATTC 60.202 57.143 0.00 0.00 0.00 2.67
388 410 1.683365 GGGAGTAGTACGGGGTGCA 60.683 63.158 0.00 0.00 0.00 4.57
389 411 0.974525 AAGGGAGTAGTACGGGGTGC 60.975 60.000 0.00 0.00 0.00 5.01
390 412 1.109609 GAAGGGAGTAGTACGGGGTG 58.890 60.000 0.00 0.00 0.00 4.61
391 413 0.706433 TGAAGGGAGTAGTACGGGGT 59.294 55.000 0.00 0.00 0.00 4.95
392 414 1.962100 GATGAAGGGAGTAGTACGGGG 59.038 57.143 0.00 0.00 0.00 5.73
393 415 1.962100 GGATGAAGGGAGTAGTACGGG 59.038 57.143 0.00 0.00 0.00 5.28
394 416 2.623889 CTGGATGAAGGGAGTAGTACGG 59.376 54.545 0.00 0.00 0.00 4.02
396 418 5.934402 TTTCTGGATGAAGGGAGTAGTAC 57.066 43.478 0.00 0.00 35.89 2.73
397 419 7.363031 AGTATTTCTGGATGAAGGGAGTAGTA 58.637 38.462 0.00 0.00 35.89 1.82
398 420 6.206042 AGTATTTCTGGATGAAGGGAGTAGT 58.794 40.000 0.00 0.00 35.89 2.73
399 421 6.739331 AGTATTTCTGGATGAAGGGAGTAG 57.261 41.667 0.00 0.00 35.89 2.57
400 422 6.443849 ACAAGTATTTCTGGATGAAGGGAGTA 59.556 38.462 0.00 0.00 35.89 2.59
401 423 5.251700 ACAAGTATTTCTGGATGAAGGGAGT 59.748 40.000 0.00 0.00 35.89 3.85
403 425 5.250543 TGACAAGTATTTCTGGATGAAGGGA 59.749 40.000 0.00 0.00 35.89 4.20
404 426 5.500234 TGACAAGTATTTCTGGATGAAGGG 58.500 41.667 0.00 0.00 35.89 3.95
405 427 6.825213 TGATGACAAGTATTTCTGGATGAAGG 59.175 38.462 0.00 0.00 35.89 3.46
406 428 7.854557 TGATGACAAGTATTTCTGGATGAAG 57.145 36.000 0.00 0.00 35.89 3.02
408 430 8.514594 GTTTTGATGACAAGTATTTCTGGATGA 58.485 33.333 0.00 0.00 37.32 2.92
409 431 7.482743 CGTTTTGATGACAAGTATTTCTGGATG 59.517 37.037 0.00 0.00 37.32 3.51
410 432 7.390440 TCGTTTTGATGACAAGTATTTCTGGAT 59.610 33.333 0.00 0.00 37.32 3.41
411 433 6.708502 TCGTTTTGATGACAAGTATTTCTGGA 59.291 34.615 0.00 0.00 37.32 3.86
412 434 6.898041 TCGTTTTGATGACAAGTATTTCTGG 58.102 36.000 0.00 0.00 37.32 3.86
413 435 8.955061 ATTCGTTTTGATGACAAGTATTTCTG 57.045 30.769 0.00 0.00 37.32 3.02
418 440 9.840427 CCTTTTATTCGTTTTGATGACAAGTAT 57.160 29.630 0.00 0.00 37.32 2.12
423 445 5.770663 TCCCCTTTTATTCGTTTTGATGACA 59.229 36.000 0.00 0.00 0.00 3.58
426 448 6.630071 ACATCCCCTTTTATTCGTTTTGATG 58.370 36.000 0.00 0.00 33.80 3.07
427 449 6.850752 ACATCCCCTTTTATTCGTTTTGAT 57.149 33.333 0.00 0.00 0.00 2.57
429 451 8.996024 AAATACATCCCCTTTTATTCGTTTTG 57.004 30.769 0.00 0.00 0.00 2.44
431 453 8.808092 TCAAAATACATCCCCTTTTATTCGTTT 58.192 29.630 0.00 0.00 0.00 3.60
433 455 7.948034 TCAAAATACATCCCCTTTTATTCGT 57.052 32.000 0.00 0.00 0.00 3.85
434 456 8.413229 ACATCAAAATACATCCCCTTTTATTCG 58.587 33.333 0.00 0.00 0.00 3.34
441 463 9.889128 CAAAAATACATCAAAATACATCCCCTT 57.111 29.630 0.00 0.00 0.00 3.95
443 465 9.665719 AACAAAAATACATCAAAATACATCCCC 57.334 29.630 0.00 0.00 0.00 4.81
475 497 9.993454 TCATCAAAATGGACAAAAATGAATGTA 57.007 25.926 0.00 0.00 33.42 2.29
476 498 8.776470 GTCATCAAAATGGACAAAAATGAATGT 58.224 29.630 0.00 0.00 33.42 2.71
477 499 8.775527 TGTCATCAAAATGGACAAAAATGAATG 58.224 29.630 0.00 0.00 33.42 2.67
478 500 8.905660 TGTCATCAAAATGGACAAAAATGAAT 57.094 26.923 0.00 0.00 33.42 2.57
479 501 8.728337 TTGTCATCAAAATGGACAAAAATGAA 57.272 26.923 4.15 0.00 33.71 2.57
480 502 7.986320 ACTTGTCATCAAAATGGACAAAAATGA 59.014 29.630 7.70 0.00 34.98 2.57
481 503 8.145316 ACTTGTCATCAAAATGGACAAAAATG 57.855 30.769 7.70 0.11 34.98 2.32
483 505 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
484 506 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
485 507 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
486 508 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
487 509 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
488 510 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
489 511 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
490 512 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
491 513 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
492 514 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
493 515 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
494 516 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
495 517 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
496 518 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
497 519 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
498 520 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
499 521 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
500 522 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
501 523 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
502 524 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
503 525 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
504 526 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
505 527 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
506 528 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
507 529 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
508 530 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
509 531 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
510 532 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
511 533 0.033796 AATGTACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
512 534 0.384669 GAATGTACTCCCTCCGTCCG 59.615 60.000 0.00 0.00 0.00 4.79
513 535 0.384669 CGAATGTACTCCCTCCGTCC 59.615 60.000 0.00 0.00 0.00 4.79
514 536 0.248949 GCGAATGTACTCCCTCCGTC 60.249 60.000 0.00 0.00 0.00 4.79
515 537 0.968901 TGCGAATGTACTCCCTCCGT 60.969 55.000 0.00 0.00 0.00 4.69
516 538 0.174845 TTGCGAATGTACTCCCTCCG 59.825 55.000 0.00 0.00 0.00 4.63
517 539 2.213499 CATTGCGAATGTACTCCCTCC 58.787 52.381 0.00 0.00 34.18 4.30
518 540 1.599542 GCATTGCGAATGTACTCCCTC 59.400 52.381 0.00 0.00 41.01 4.30
519 541 1.065491 TGCATTGCGAATGTACTCCCT 60.065 47.619 3.84 0.00 41.01 4.20
520 542 1.378531 TGCATTGCGAATGTACTCCC 58.621 50.000 3.84 0.00 41.01 4.30
521 543 3.365832 CATTGCATTGCGAATGTACTCC 58.634 45.455 18.00 0.00 41.01 3.85
522 544 2.785477 GCATTGCATTGCGAATGTACTC 59.215 45.455 16.99 11.21 41.01 2.59
523 545 2.164017 TGCATTGCATTGCGAATGTACT 59.836 40.909 24.10 0.34 45.77 2.73
524 546 2.279659 GTGCATTGCATTGCGAATGTAC 59.720 45.455 24.10 23.99 45.77 2.90
525 547 2.528125 GTGCATTGCATTGCGAATGTA 58.472 42.857 24.10 19.19 45.77 2.29
526 548 1.352114 GTGCATTGCATTGCGAATGT 58.648 45.000 24.10 1.52 45.77 2.71
527 549 0.296349 CGTGCATTGCATTGCGAATG 59.704 50.000 24.10 20.21 45.77 2.67
528 550 0.802994 CCGTGCATTGCATTGCGAAT 60.803 50.000 24.10 1.93 45.77 3.34
529 551 1.444042 CCGTGCATTGCATTGCGAA 60.444 52.632 24.10 8.91 45.77 4.70
530 552 2.178769 CCGTGCATTGCATTGCGA 59.821 55.556 24.10 13.30 45.77 5.10
531 553 2.126385 ACCGTGCATTGCATTGCG 60.126 55.556 24.10 13.36 45.77 4.85
532 554 0.109365 TACACCGTGCATTGCATTGC 60.109 50.000 23.33 23.33 41.91 3.56
533 555 1.616620 GTACACCGTGCATTGCATTG 58.383 50.000 15.49 14.18 41.91 2.82
534 556 0.167908 CGTACACCGTGCATTGCATT 59.832 50.000 15.49 0.00 41.91 3.56
535 557 1.793581 CGTACACCGTGCATTGCAT 59.206 52.632 15.49 0.37 41.91 3.96
536 558 3.249013 CGTACACCGTGCATTGCA 58.751 55.556 7.38 7.38 35.60 4.08
545 567 7.862372 AGGTATTTGTGTTATATACGTACACCG 59.138 37.037 14.26 0.00 41.03 4.94
546 568 9.533253 AAGGTATTTGTGTTATATACGTACACC 57.467 33.333 14.26 0.47 41.03 4.16
582 604 0.529378 GGCTTTGAGCACCCATCTTG 59.471 55.000 2.04 0.00 44.75 3.02
585 607 0.960364 TTCGGCTTTGAGCACCCATC 60.960 55.000 2.04 0.00 44.75 3.51
586 608 0.323725 ATTCGGCTTTGAGCACCCAT 60.324 50.000 2.04 0.00 44.75 4.00
588 610 0.733150 GTATTCGGCTTTGAGCACCC 59.267 55.000 2.04 0.00 44.75 4.61
594 616 2.083774 CCTTGCTGTATTCGGCTTTGA 58.916 47.619 4.67 0.00 45.38 2.69
599 621 2.544267 GTGTATCCTTGCTGTATTCGGC 59.456 50.000 0.00 0.00 45.37 5.54
607 629 5.253330 TCTTTTAAGGGTGTATCCTTGCTG 58.747 41.667 6.69 0.00 45.87 4.41
609 631 5.450550 GCATCTTTTAAGGGTGTATCCTTGC 60.451 44.000 6.69 0.00 45.87 4.01
610 632 5.888161 AGCATCTTTTAAGGGTGTATCCTTG 59.112 40.000 6.69 0.00 45.87 3.61
612 634 5.717119 AGCATCTTTTAAGGGTGTATCCT 57.283 39.130 0.00 0.00 39.17 3.24
613 635 5.885912 TCAAGCATCTTTTAAGGGTGTATCC 59.114 40.000 0.00 0.00 0.00 2.59
614 636 7.391148 TTCAAGCATCTTTTAAGGGTGTATC 57.609 36.000 0.00 0.00 0.00 2.24
615 637 7.147846 CCATTCAAGCATCTTTTAAGGGTGTAT 60.148 37.037 0.00 0.00 0.00 2.29
616 638 6.152661 CCATTCAAGCATCTTTTAAGGGTGTA 59.847 38.462 0.00 0.00 0.00 2.90
617 639 5.047092 CCATTCAAGCATCTTTTAAGGGTGT 60.047 40.000 0.00 0.00 0.00 4.16
618 640 5.185635 TCCATTCAAGCATCTTTTAAGGGTG 59.814 40.000 0.00 0.00 0.00 4.61
619 641 5.185828 GTCCATTCAAGCATCTTTTAAGGGT 59.814 40.000 0.00 0.00 0.00 4.34
620 642 5.185635 TGTCCATTCAAGCATCTTTTAAGGG 59.814 40.000 0.00 0.00 0.00 3.95
621 643 6.071728 AGTGTCCATTCAAGCATCTTTTAAGG 60.072 38.462 0.00 0.00 0.00 2.69
623 645 6.489700 TGAGTGTCCATTCAAGCATCTTTTAA 59.510 34.615 0.00 0.00 0.00 1.52
624 646 6.003326 TGAGTGTCCATTCAAGCATCTTTTA 58.997 36.000 0.00 0.00 0.00 1.52
654 676 3.936453 TGCGCCATCGAGTAATAGTTTTT 59.064 39.130 4.18 0.00 38.10 1.94
655 677 3.527533 TGCGCCATCGAGTAATAGTTTT 58.472 40.909 4.18 0.00 38.10 2.43
656 678 3.123804 CTGCGCCATCGAGTAATAGTTT 58.876 45.455 4.18 0.00 38.10 2.66
657 679 2.361119 TCTGCGCCATCGAGTAATAGTT 59.639 45.455 4.18 0.00 38.10 2.24
658 680 1.954382 TCTGCGCCATCGAGTAATAGT 59.046 47.619 4.18 0.00 38.10 2.12
659 681 2.706555 TCTGCGCCATCGAGTAATAG 57.293 50.000 4.18 0.00 38.10 1.73
661 683 2.224042 TGAATCTGCGCCATCGAGTAAT 60.224 45.455 4.18 0.00 38.10 1.89
663 685 0.744281 TGAATCTGCGCCATCGAGTA 59.256 50.000 4.18 0.00 38.10 2.59
664 686 0.529337 CTGAATCTGCGCCATCGAGT 60.529 55.000 4.18 0.00 38.10 4.18
665 687 1.829349 GCTGAATCTGCGCCATCGAG 61.829 60.000 4.18 0.00 38.10 4.04
725 804 0.464916 GTCTCTCTCTCTCCCCGGTC 60.465 65.000 0.00 0.00 0.00 4.79
726 805 1.610873 GTCTCTCTCTCTCCCCGGT 59.389 63.158 0.00 0.00 0.00 5.28
727 806 1.152839 GGTCTCTCTCTCTCCCCGG 60.153 68.421 0.00 0.00 0.00 5.73
729 808 0.396556 GGTGGTCTCTCTCTCTCCCC 60.397 65.000 0.00 0.00 0.00 4.81
735 819 2.363147 GGCCGGTGGTCTCTCTCT 60.363 66.667 1.90 0.00 0.00 3.10
750 844 0.234884 GGTGAGTAATAATGCGCGGC 59.765 55.000 8.83 0.00 0.00 6.53
752 846 0.865769 GGGGTGAGTAATAATGCGCG 59.134 55.000 0.00 0.00 0.00 6.86
753 847 0.865769 CGGGGTGAGTAATAATGCGC 59.134 55.000 0.00 0.00 0.00 6.09
849 948 0.109342 CGGATTGATTGAGGGGAGGG 59.891 60.000 0.00 0.00 0.00 4.30
850 949 0.536006 GCGGATTGATTGAGGGGAGG 60.536 60.000 0.00 0.00 0.00 4.30
851 950 0.536006 GGCGGATTGATTGAGGGGAG 60.536 60.000 0.00 0.00 0.00 4.30
939 1042 1.615262 GGAGGGGTGGGGATTCTTG 59.385 63.158 0.00 0.00 0.00 3.02
975 1090 2.105128 CAGTCGCCGGATCTGTCC 59.895 66.667 5.05 0.00 41.40 4.02
991 1106 0.184692 TTGGACACCATGGCTTGTCA 59.815 50.000 27.64 16.03 43.40 3.58
1282 1406 2.365293 GAGCAAAAGAAGGGGAGCAAAA 59.635 45.455 0.00 0.00 0.00 2.44
1332 1461 0.179059 AAACAAGCAAAAAGGCGGGG 60.179 50.000 0.00 0.00 39.27 5.73
1421 1555 9.801873 CCATCTACAAATTTTAATCGGACAAAT 57.198 29.630 0.00 0.00 0.00 2.32
1425 1559 8.209917 AGTCCATCTACAAATTTTAATCGGAC 57.790 34.615 11.71 11.71 38.62 4.79
1513 1663 3.305398 AGTAGAGAAAACACTGGAGCG 57.695 47.619 0.00 0.00 0.00 5.03
1514 1664 5.394224 ACTAGTAGAGAAAACACTGGAGC 57.606 43.478 3.59 0.00 0.00 4.70
1515 1665 7.690952 AGTACTAGTAGAGAAAACACTGGAG 57.309 40.000 1.87 0.00 0.00 3.86
1516 1666 8.381636 AGTAGTACTAGTAGAGAAAACACTGGA 58.618 37.037 8.55 0.00 0.00 3.86
1517 1667 8.564509 AGTAGTACTAGTAGAGAAAACACTGG 57.435 38.462 8.55 0.00 0.00 4.00
1518 1668 8.667463 GGAGTAGTACTAGTAGAGAAAACACTG 58.333 40.741 10.28 0.00 0.00 3.66
1519 1669 8.605065 AGGAGTAGTACTAGTAGAGAAAACACT 58.395 37.037 10.28 0.00 0.00 3.55
1520 1670 8.791327 AGGAGTAGTACTAGTAGAGAAAACAC 57.209 38.462 10.28 0.00 0.00 3.32
1532 1682 7.883833 TGGCATATCAAGTAGGAGTAGTACTAG 59.116 40.741 1.87 0.00 30.26 2.57
1535 1685 6.570764 GCTGGCATATCAAGTAGGAGTAGTAC 60.571 46.154 0.00 0.00 0.00 2.73
1539 1689 3.255888 CGCTGGCATATCAAGTAGGAGTA 59.744 47.826 0.00 0.00 0.00 2.59
1540 1690 2.036475 CGCTGGCATATCAAGTAGGAGT 59.964 50.000 0.00 0.00 0.00 3.85
1541 1691 2.297315 TCGCTGGCATATCAAGTAGGAG 59.703 50.000 0.00 0.00 0.00 3.69
1543 1693 2.820059 TCGCTGGCATATCAAGTAGG 57.180 50.000 0.00 0.00 0.00 3.18
1544 1694 4.083643 CCAAATCGCTGGCATATCAAGTAG 60.084 45.833 0.00 0.00 0.00 2.57
1547 1697 3.278367 CCAAATCGCTGGCATATCAAG 57.722 47.619 0.00 0.00 0.00 3.02
1610 1815 3.684305 TCGCATCGACAAACAAGATCAAT 59.316 39.130 0.00 0.00 0.00 2.57
1713 1948 8.210946 TCTTGGGATATCAAAAATATCGTGTCT 58.789 33.333 4.83 0.00 33.08 3.41
1714 1949 8.378172 TCTTGGGATATCAAAAATATCGTGTC 57.622 34.615 4.83 0.00 33.08 3.67
1722 1957 9.597681 ATTGCTAGATCTTGGGATATCAAAAAT 57.402 29.630 0.00 0.00 31.46 1.82
1827 2062 9.629878 ACTGCTACAGAGTATTACTACTACATT 57.370 33.333 0.78 0.00 38.33 2.71
1832 2067 8.851541 GGATACTGCTACAGAGTATTACTACT 57.148 38.462 0.78 0.00 40.98 2.57
1939 2183 2.020720 ACAAATTGACGCACAGGAACA 58.979 42.857 0.00 0.00 0.00 3.18
1952 2197 5.523013 ACCACAACAAACGAAACAAATTG 57.477 34.783 0.00 0.00 0.00 2.32
1962 2207 4.323336 GCATTAAGCATACCACAACAAACG 59.677 41.667 0.00 0.00 44.79 3.60
1981 2226 1.274167 CCATTGGCAGTCACAAGCATT 59.726 47.619 0.00 0.00 0.00 3.56
1982 2227 0.892755 CCATTGGCAGTCACAAGCAT 59.107 50.000 0.00 0.00 0.00 3.79
1983 2228 0.178995 TCCATTGGCAGTCACAAGCA 60.179 50.000 0.00 0.00 0.00 3.91
1984 2229 0.961019 TTCCATTGGCAGTCACAAGC 59.039 50.000 0.00 0.00 0.00 4.01
2003 2248 7.397761 GCCTGAGGTTAGGATAATACATACTCT 59.602 40.741 0.00 0.00 40.42 3.24
2004 2249 7.178628 TGCCTGAGGTTAGGATAATACATACTC 59.821 40.741 0.00 0.00 40.42 2.59
2006 2251 7.241042 TGCCTGAGGTTAGGATAATACATAC 57.759 40.000 0.00 0.00 40.42 2.39
2007 2252 7.256547 GGTTGCCTGAGGTTAGGATAATACATA 60.257 40.741 0.00 0.00 40.42 2.29
2008 2253 6.465894 GGTTGCCTGAGGTTAGGATAATACAT 60.466 42.308 0.00 0.00 40.42 2.29
2017 2263 1.073923 AGTTGGTTGCCTGAGGTTAGG 59.926 52.381 0.00 0.00 40.95 2.69
2020 2266 0.550914 TCAGTTGGTTGCCTGAGGTT 59.449 50.000 0.00 0.00 32.93 3.50
2098 2344 4.351874 TGGCTTCTTGTGCTAACTTAGT 57.648 40.909 0.00 0.00 0.00 2.24
2235 2583 5.342806 TGTCAGTAGATTCACAAAAAGCG 57.657 39.130 0.00 0.00 0.00 4.68
2686 3306 3.790089 AGGACCTGAAGTTAACTTGGG 57.210 47.619 25.17 24.56 36.11 4.12
2740 3360 8.142994 AGATCACGTCCAATAATAACAACATC 57.857 34.615 0.00 0.00 0.00 3.06
2758 3378 7.246311 AGCAAACAAATAAATCAGAGATCACG 58.754 34.615 0.00 0.00 0.00 4.35
2839 3485 1.156736 CACTACTGACCCCGCAAAAG 58.843 55.000 0.00 0.00 0.00 2.27
2887 3533 1.078918 TGCCATCTGTCGCCTGAAG 60.079 57.895 0.00 0.00 0.00 3.02
2890 3536 1.078918 TTCTGCCATCTGTCGCCTG 60.079 57.895 0.00 0.00 0.00 4.85
2892 3538 0.179062 ATCTTCTGCCATCTGTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
3000 3646 6.409005 CCAGCTAGGCTATTATTGCTCCATAT 60.409 42.308 2.53 0.00 36.40 1.78
3001 3647 5.104776 CCAGCTAGGCTATTATTGCTCCATA 60.105 44.000 2.53 0.00 36.40 2.74
3013 3659 5.075493 CCAATCAAAATCCAGCTAGGCTAT 58.925 41.667 0.00 0.00 36.40 2.97
3052 3698 0.180406 ACCACAAGCCGACAAACTCT 59.820 50.000 0.00 0.00 0.00 3.24
3231 3881 9.549078 GCTTCTTTTAACTGAGCTATAGGTTAT 57.451 33.333 5.80 0.00 0.00 1.89
3373 4024 8.091385 TGCAGCATAATAATTGTCAGTAGATG 57.909 34.615 0.00 0.00 0.00 2.90
3454 4117 4.836825 ACTATCTGGACATCTTTGTGTGG 58.163 43.478 0.00 0.00 35.79 4.17
3489 4152 0.610232 ACTTGCTCCTTGGATGTGGC 60.610 55.000 0.00 0.00 0.00 5.01
3732 4452 9.806203 TCCATTACAATATGCTTTTCTTTGATG 57.194 29.630 0.00 0.00 0.00 3.07
3797 4517 0.662619 ATGTGAACCAAGTGTGTGCG 59.337 50.000 0.00 0.00 0.00 5.34
3864 4584 8.139350 GGATTCAAAATGTTGCTATGATGATGA 58.861 33.333 0.00 0.00 34.50 2.92
4012 4823 4.350368 AACTGACACACATCCATACACA 57.650 40.909 0.00 0.00 0.00 3.72
4073 4890 5.238650 AGTGTACACAAAATGAGGTAAGTGC 59.761 40.000 27.06 0.00 0.00 4.40
4130 4947 6.350445 CCCTGGAAATGTAGAAAACCAATGAG 60.350 42.308 0.00 0.00 0.00 2.90
4133 4950 5.402630 ACCCTGGAAATGTAGAAAACCAAT 58.597 37.500 0.00 0.00 0.00 3.16
4143 4960 3.199442 TCTCTGGACCCTGGAAATGTA 57.801 47.619 0.00 0.00 0.00 2.29
4149 4966 1.075970 CGGATCTCTGGACCCTGGA 60.076 63.158 0.00 0.00 0.00 3.86
4150 4967 0.106167 TACGGATCTCTGGACCCTGG 60.106 60.000 0.00 0.00 0.00 4.45
4591 5408 7.611467 ACCTTTGACATCAGCATTATTGACTTA 59.389 33.333 0.00 0.00 0.00 2.24
4866 5693 6.382282 ACTTGATCATAGACTCCAACATCTGA 59.618 38.462 0.00 0.00 0.00 3.27
5070 5897 1.952296 GGGGCTGATGACATGATTGAC 59.048 52.381 0.00 0.00 0.00 3.18
5313 6140 1.410004 GGATCACACCCCTCACGATA 58.590 55.000 0.00 0.00 0.00 2.92
5325 6152 1.139654 GCACTCAGCATAGGGATCACA 59.860 52.381 0.00 0.00 44.79 3.58
5388 6215 1.538047 TCTTCATGGCAAACCTCAGC 58.462 50.000 0.00 0.00 36.63 4.26
5596 6434 2.332312 TAACCAGGTTGCACTGCCGT 62.332 55.000 15.82 0.00 37.16 5.68
5647 6485 4.108570 TGGCTAACCCCTCTCATAAAGAA 58.891 43.478 0.00 0.00 30.92 2.52
5726 6568 4.868171 TCAGGTAGTTCAATCGTTGCATAC 59.132 41.667 0.00 0.00 0.00 2.39
5817 6675 8.450578 TTGTATAACAATCATCCTTCACCATC 57.549 34.615 0.00 0.00 32.34 3.51
5833 6691 7.872881 TGACCAAACGCTTTTATTGTATAACA 58.127 30.769 0.00 0.00 0.00 2.41
5834 6692 8.730970 TTGACCAAACGCTTTTATTGTATAAC 57.269 30.769 0.00 0.00 0.00 1.89
5837 6695 8.825667 AAATTGACCAAACGCTTTTATTGTAT 57.174 26.923 0.00 0.00 0.00 2.29
5838 6696 8.543774 CAAAATTGACCAAACGCTTTTATTGTA 58.456 29.630 0.00 0.00 0.00 2.41
5840 6698 6.356714 GCAAAATTGACCAAACGCTTTTATTG 59.643 34.615 0.00 0.00 0.00 1.90
5855 6714 3.569701 TGAGAAGTCTGGGCAAAATTGAC 59.430 43.478 0.00 0.00 34.70 3.18
5862 6729 3.243839 GCAAAATTGAGAAGTCTGGGCAA 60.244 43.478 0.00 0.00 0.00 4.52
5874 6741 3.443681 ACGGTAATCTGGGCAAAATTGAG 59.556 43.478 0.00 0.00 0.00 3.02
5876 6743 3.730662 CGACGGTAATCTGGGCAAAATTG 60.731 47.826 0.00 0.00 0.00 2.32
5878 6745 2.014128 CGACGGTAATCTGGGCAAAAT 58.986 47.619 0.00 0.00 0.00 1.82
5884 6751 2.019249 TCTACACGACGGTAATCTGGG 58.981 52.381 0.00 0.00 0.00 4.45
5886 6753 4.352600 AACTCTACACGACGGTAATCTG 57.647 45.455 0.00 0.00 0.00 2.90
5887 6754 4.456911 TCAAACTCTACACGACGGTAATCT 59.543 41.667 0.00 0.00 0.00 2.40
5888 6755 4.726416 TCAAACTCTACACGACGGTAATC 58.274 43.478 0.00 0.00 0.00 1.75
5889 6756 4.771590 TCAAACTCTACACGACGGTAAT 57.228 40.909 0.00 0.00 0.00 1.89
5890 6757 4.566545 TTCAAACTCTACACGACGGTAA 57.433 40.909 0.00 0.00 0.00 2.85
5891 6758 4.566545 TTTCAAACTCTACACGACGGTA 57.433 40.909 0.00 0.00 0.00 4.02
5892 6759 3.441496 TTTCAAACTCTACACGACGGT 57.559 42.857 0.00 0.00 0.00 4.83
6066 6947 2.159014 GCCATTGTCATACCTACCACGA 60.159 50.000 0.00 0.00 0.00 4.35
6080 6961 0.744414 CTCCGTTCGGATGCCATTGT 60.744 55.000 14.34 0.00 33.34 2.71
6092 6977 1.731720 AAATCTGCTCTGCTCCGTTC 58.268 50.000 0.00 0.00 0.00 3.95
6467 7366 0.678048 GGTTCCACTCCCAGTGCATC 60.678 60.000 0.00 0.00 44.63 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.