Multiple sequence alignment - TraesCS3D01G192500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G192500 chr3D 100.000 5175 0 0 1 5175 182369547 182364373 0.000000e+00 9557.0
1 TraesCS3D01G192500 chr3A 91.013 2281 115 36 2400 4669 231015976 231018177 0.000000e+00 2994.0
2 TraesCS3D01G192500 chr3A 97.707 1570 32 4 863 2429 231014404 231015972 0.000000e+00 2697.0
3 TraesCS3D01G192500 chr3A 96.850 127 4 0 4706 4832 231018168 231018294 4.060000e-51 213.0
4 TraesCS3D01G192500 chr3A 94.737 95 5 0 4907 5001 231039561 231039655 1.160000e-31 148.0
5 TraesCS3D01G192500 chr3B 96.068 1526 53 5 910 2432 260854008 260852487 0.000000e+00 2479.0
6 TraesCS3D01G192500 chr3B 85.096 1248 109 35 3376 4584 260852200 260850991 0.000000e+00 1203.0
7 TraesCS3D01G192500 chr3B 84.768 151 14 5 3157 3305 260852306 260852163 5.400000e-30 143.0
8 TraesCS3D01G192500 chr3B 96.552 58 2 0 1722 1779 783805540 783805483 4.270000e-16 97.1
9 TraesCS3D01G192500 chr2A 85.783 837 108 7 3 833 329695008 329695839 0.000000e+00 876.0
10 TraesCS3D01G192500 chr2A 78.316 392 63 13 481 867 598631200 598631574 3.120000e-57 233.0
11 TraesCS3D01G192500 chr4B 84.563 881 113 12 4 865 472866192 472867068 0.000000e+00 852.0
12 TraesCS3D01G192500 chr6B 84.271 871 124 9 3 867 93900451 93899588 0.000000e+00 837.0
13 TraesCS3D01G192500 chr6B 84.204 861 125 10 15 869 585331281 585332136 0.000000e+00 826.0
14 TraesCS3D01G192500 chr6D 83.886 875 130 7 3 869 391567051 391567922 0.000000e+00 824.0
15 TraesCS3D01G192500 chr6D 98.870 177 2 0 4999 5175 245016474 245016650 3.010000e-82 316.0
16 TraesCS3D01G192500 chr6D 98.864 176 2 0 5000 5175 426840509 426840684 1.080000e-81 315.0
17 TraesCS3D01G192500 chr4D 85.112 806 109 8 3 801 81923660 81922859 0.000000e+00 813.0
18 TraesCS3D01G192500 chr4D 98.864 176 2 0 5000 5175 445334815 445334990 1.080000e-81 315.0
19 TraesCS3D01G192500 chr4D 98.857 175 2 0 5001 5175 85622291 85622117 3.890000e-81 313.0
20 TraesCS3D01G192500 chr5A 82.883 888 128 10 3 867 513223352 513224238 0.000000e+00 776.0
21 TraesCS3D01G192500 chr1B 84.974 772 107 5 9 773 643951860 643952629 0.000000e+00 774.0
22 TraesCS3D01G192500 chr5B 83.540 808 116 11 3 798 34608466 34607664 0.000000e+00 739.0
23 TraesCS3D01G192500 chr5B 95.556 45 2 0 2896 2940 324818511 324818467 7.190000e-09 73.1
24 TraesCS3D01G192500 chr5B 95.556 45 2 0 2896 2940 579032048 579032092 7.190000e-09 73.1
25 TraesCS3D01G192500 chr2D 98.864 176 2 0 5000 5175 284515113 284514938 1.080000e-81 315.0
26 TraesCS3D01G192500 chr1D 98.864 176 2 0 5000 5175 240992149 240991974 1.080000e-81 315.0
27 TraesCS3D01G192500 chr1D 98.324 179 3 0 4997 5175 349561198 349561376 1.080000e-81 315.0
28 TraesCS3D01G192500 chrUn 98.857 175 2 0 5001 5175 98017665 98017839 3.890000e-81 313.0
29 TraesCS3D01G192500 chr5D 98.857 175 2 0 5001 5175 457555865 457556039 3.890000e-81 313.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G192500 chr3D 182364373 182369547 5174 True 9557 9557 100.000 1 5175 1 chr3D.!!$R1 5174
1 TraesCS3D01G192500 chr3A 231014404 231018294 3890 False 1968 2994 95.190 863 4832 3 chr3A.!!$F2 3969
2 TraesCS3D01G192500 chr3B 260850991 260854008 3017 True 1275 2479 88.644 910 4584 3 chr3B.!!$R2 3674
3 TraesCS3D01G192500 chr2A 329695008 329695839 831 False 876 876 85.783 3 833 1 chr2A.!!$F1 830
4 TraesCS3D01G192500 chr4B 472866192 472867068 876 False 852 852 84.563 4 865 1 chr4B.!!$F1 861
5 TraesCS3D01G192500 chr6B 93899588 93900451 863 True 837 837 84.271 3 867 1 chr6B.!!$R1 864
6 TraesCS3D01G192500 chr6B 585331281 585332136 855 False 826 826 84.204 15 869 1 chr6B.!!$F1 854
7 TraesCS3D01G192500 chr6D 391567051 391567922 871 False 824 824 83.886 3 869 1 chr6D.!!$F2 866
8 TraesCS3D01G192500 chr4D 81922859 81923660 801 True 813 813 85.112 3 801 1 chr4D.!!$R1 798
9 TraesCS3D01G192500 chr5A 513223352 513224238 886 False 776 776 82.883 3 867 1 chr5A.!!$F1 864
10 TraesCS3D01G192500 chr1B 643951860 643952629 769 False 774 774 84.974 9 773 1 chr1B.!!$F1 764
11 TraesCS3D01G192500 chr5B 34607664 34608466 802 True 739 739 83.540 3 798 1 chr5B.!!$R1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 824 0.241213 CGTTTGAGAGGCTCGTCTGA 59.759 55.0 9.22 0.0 32.35 3.27 F
1818 1865 0.957362 GAGCCATTCTTATGCAGGGC 59.043 55.0 0.00 0.0 41.65 5.19 F
2593 2675 1.804601 ACTAAACGGCAGCCTACAAC 58.195 50.0 10.54 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2579 2661 0.324943 ATTCTGTTGTAGGCTGCCGT 59.675 50.0 13.96 4.43 0.00 5.68 R
3629 3720 0.751643 ACTCCATACCAAATGGCGCC 60.752 55.0 22.73 22.73 39.01 6.53 R
4332 4429 0.040067 GCGACTGTGCAAGGGAAAAG 60.040 55.0 0.00 0.00 34.15 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 249 3.080765 TCCATGGTGCGTCCCGAT 61.081 61.111 12.58 0.00 34.77 4.18
238 250 2.896854 CCATGGTGCGTCCCGATG 60.897 66.667 2.57 0.00 34.77 3.84
239 251 3.576356 CATGGTGCGTCCCGATGC 61.576 66.667 1.81 1.81 43.39 3.91
295 307 2.953669 CGTTCGGACGTTAGATGGG 58.046 57.895 8.45 0.00 44.08 4.00
446 458 1.166531 GGAGCACAAGCCAAACGACT 61.167 55.000 0.00 0.00 43.56 4.18
455 467 1.405821 AGCCAAACGACTATCTCCTCG 59.594 52.381 0.00 0.00 35.96 4.63
538 552 2.989639 CCATGCCGAAGAGGACCA 59.010 61.111 0.00 0.00 45.00 4.02
580 602 4.649705 TGGCGGAGGGGAGTGGAA 62.650 66.667 0.00 0.00 0.00 3.53
587 609 2.182858 GAGGGGAGTGGAAGGGAGGA 62.183 65.000 0.00 0.00 0.00 3.71
729 761 7.458806 TCCATCTCATATTTGGACTGGATATGA 59.541 37.037 0.00 0.00 39.29 2.15
731 763 6.981762 CTCATATTTGGACTGGATATGAGC 57.018 41.667 15.53 0.00 45.92 4.26
780 824 0.241213 CGTTTGAGAGGCTCGTCTGA 59.759 55.000 9.22 0.00 32.35 3.27
789 833 3.999663 AGAGGCTCGTCTGAATCAAAAAG 59.000 43.478 9.22 0.00 0.00 2.27
801 845 2.649531 TCAAAAAGTCATGACCGGGT 57.350 45.000 22.21 0.00 0.00 5.28
802 846 2.938838 TCAAAAAGTCATGACCGGGTT 58.061 42.857 22.21 7.23 0.00 4.11
872 916 4.031426 CGGTTGTAGATGCTCTAAACGAAC 59.969 45.833 0.00 0.00 29.58 3.95
877 921 4.810191 AGATGCTCTAAACGAACTTCCT 57.190 40.909 0.00 0.00 0.00 3.36
880 924 2.631062 TGCTCTAAACGAACTTCCTCCA 59.369 45.455 0.00 0.00 0.00 3.86
1216 1262 2.939103 CCCAAGGTCTGTCGATTGATTC 59.061 50.000 0.00 0.00 0.00 2.52
1263 1309 1.684049 CTCACTCGGGAGGCCTTCT 60.684 63.158 11.94 0.00 0.00 2.85
1335 1381 1.184970 TAGGCTTTGGCTTTGGTGGC 61.185 55.000 0.00 0.00 39.70 5.01
1350 1396 1.132453 GGTGGCTTCTTATGCGAAACC 59.868 52.381 0.00 0.00 31.36 3.27
1431 1477 6.348498 ACAAGTATGTTGATATGCACTAGCA 58.652 36.000 0.00 0.00 46.99 3.49
1509 1556 3.992652 TTGCAATGCAAACCAATTCTGCA 60.993 39.130 19.21 0.00 45.96 4.41
1539 1586 2.733956 TCAAATGGTCCTGTTATGCCC 58.266 47.619 0.00 0.00 0.00 5.36
1818 1865 0.957362 GAGCCATTCTTATGCAGGGC 59.043 55.000 0.00 0.00 41.65 5.19
2053 2100 2.234908 TGGGGTGTTTGTGTTTTCTTGG 59.765 45.455 0.00 0.00 0.00 3.61
2370 2419 2.086869 GATAACCAGCTGCTTTGCTCA 58.913 47.619 8.66 0.00 41.98 4.26
2455 2537 7.848223 TCATTAATGTGTCAAGACAATCGAT 57.152 32.000 14.97 0.00 43.77 3.59
2478 2560 8.893884 CGATTAGAATAGCGTAGTAGTTCTTTG 58.106 37.037 0.00 0.00 32.02 2.77
2511 2593 7.406104 AGCCTGGTTTATCTTGTTCTAATCTT 58.594 34.615 0.00 0.00 0.00 2.40
2568 2650 3.188903 TGGTGGGGATGGGCACAA 61.189 61.111 0.00 0.00 0.00 3.33
2579 2661 4.464597 GGGATGGGCACAATTGTTACTAAA 59.535 41.667 8.77 0.00 0.00 1.85
2593 2675 1.804601 ACTAAACGGCAGCCTACAAC 58.195 50.000 10.54 0.00 0.00 3.32
2605 2687 4.583871 CAGCCTACAACAGAATTCTTCCT 58.416 43.478 4.86 0.00 0.00 3.36
2609 2691 6.551227 AGCCTACAACAGAATTCTTCCTTTTT 59.449 34.615 4.86 0.00 0.00 1.94
2659 2741 7.801547 TGTTTAGTGTATACTAGCGTTGTTC 57.198 36.000 4.17 0.00 40.33 3.18
2660 2742 7.369607 TGTTTAGTGTATACTAGCGTTGTTCA 58.630 34.615 4.17 0.00 40.33 3.18
2687 2769 5.685068 TGAACATTACGCATTTTTGTCACAG 59.315 36.000 0.00 0.00 0.00 3.66
2706 2788 7.826744 TGTCACAGTATTATGGAATTAAGCACA 59.173 33.333 0.00 0.00 0.00 4.57
2707 2789 8.338259 GTCACAGTATTATGGAATTAAGCACAG 58.662 37.037 0.00 0.00 0.00 3.66
2716 2798 6.135290 TGGAATTAAGCACAGCATTATGAC 57.865 37.500 0.00 0.00 0.00 3.06
2773 2855 4.528987 GGTATTGCCCAAGGGTTAAAAAGA 59.471 41.667 7.05 0.00 37.65 2.52
2957 3039 7.462109 TGTGCATGAAACTTTACATCAAAAC 57.538 32.000 0.00 0.00 0.00 2.43
3006 3088 7.331089 AGATTTAAAAGGTACCAGAGGTCTT 57.669 36.000 15.94 0.00 37.09 3.01
3049 3131 9.647918 AGTAGATCCAGTTCAACTCTTGATATA 57.352 33.333 0.00 0.00 39.84 0.86
3091 3174 2.795329 AGGGGTAGCTTGTGACAATTG 58.205 47.619 3.24 3.24 0.00 2.32
3125 3208 5.630415 AGCATATAACTTGAGGTTAGCCA 57.370 39.130 0.00 0.00 42.74 4.75
3130 3213 7.361542 GCATATAACTTGAGGTTAGCCATGATG 60.362 40.741 0.00 0.00 42.74 3.07
3135 3218 6.058183 ACTTGAGGTTAGCCATGATGTATTC 58.942 40.000 0.00 0.00 37.19 1.75
3137 3220 4.660303 TGAGGTTAGCCATGATGTATTCCT 59.340 41.667 0.00 0.00 37.19 3.36
3191 3274 9.686683 GGTCCATATTATGCTTTTAGGTGATAT 57.313 33.333 0.00 0.00 0.00 1.63
3243 3326 4.647424 ATTTGCAATTGTACGGTATGGG 57.353 40.909 7.40 0.00 0.00 4.00
3304 3387 7.947282 TCATATGTCCGACAGTATCACAATAA 58.053 34.615 7.41 0.00 0.00 1.40
3305 3388 8.585018 TCATATGTCCGACAGTATCACAATAAT 58.415 33.333 7.41 0.00 0.00 1.28
3306 3389 9.208022 CATATGTCCGACAGTATCACAATAATT 57.792 33.333 7.41 0.00 0.00 1.40
3308 3391 7.302350 TGTCCGACAGTATCACAATAATTTG 57.698 36.000 0.00 0.00 38.86 2.32
3374 3463 4.677673 AGCTGCTCCTTTGAACAATTTT 57.322 36.364 0.00 0.00 0.00 1.82
3544 3635 4.020543 GTCCCATACCAGTAAATTTGGCA 58.979 43.478 0.00 0.00 39.39 4.92
3567 3658 6.183360 GCACAATGTATCAGCTGGAATAACTT 60.183 38.462 15.13 0.16 0.00 2.66
3568 3659 7.629222 GCACAATGTATCAGCTGGAATAACTTT 60.629 37.037 15.13 6.93 0.00 2.66
3629 3720 2.789339 CGAGTACATATGAGGTGCAACG 59.211 50.000 10.38 0.88 38.12 4.10
3650 3741 2.504367 GCGCCATTTGGTATGGAGTAT 58.496 47.619 7.94 0.00 41.64 2.12
3667 3758 6.865411 TGGAGTATTGCTACGTGTATAACAA 58.135 36.000 0.00 0.00 32.82 2.83
3675 3766 7.557036 TGCTACGTGTATAACAATATAAGCG 57.443 36.000 0.00 0.00 30.53 4.68
3691 3782 9.169468 CAATATAAGCGACAATTTCAACATACC 57.831 33.333 0.00 0.00 0.00 2.73
3737 3834 5.059833 GCAAGATTTAGACTGATAGGTGGG 58.940 45.833 0.00 0.00 0.00 4.61
3738 3835 5.396884 GCAAGATTTAGACTGATAGGTGGGT 60.397 44.000 0.00 0.00 0.00 4.51
3778 3875 4.510340 GTGTCGATGTAAGGAGTTGTTTGT 59.490 41.667 0.00 0.00 0.00 2.83
3780 3877 4.748102 GTCGATGTAAGGAGTTGTTTGTCA 59.252 41.667 0.00 0.00 0.00 3.58
3790 3887 7.492352 AGGAGTTGTTTGTCAATACTTGTAC 57.508 36.000 0.00 0.00 38.38 2.90
3793 3890 7.040686 GGAGTTGTTTGTCAATACTTGTACCAT 60.041 37.037 0.00 0.00 38.38 3.55
3799 3896 9.389570 GTTTGTCAATACTTGTACCATTGTAAC 57.610 33.333 0.00 0.48 32.64 2.50
3815 3912 7.285629 ACCATTGTAACGATTCATCTCTCTCTA 59.714 37.037 0.00 0.00 0.00 2.43
3818 3915 7.867305 TGTAACGATTCATCTCTCTCTAAGT 57.133 36.000 0.00 0.00 0.00 2.24
3841 3938 3.880047 ATTGATGGCATGGTGTGAAAG 57.120 42.857 3.81 0.00 0.00 2.62
3849 3946 2.230992 GCATGGTGTGAAAGTATTGGCA 59.769 45.455 0.00 0.00 0.00 4.92
3850 3947 3.305950 GCATGGTGTGAAAGTATTGGCAA 60.306 43.478 0.68 0.68 0.00 4.52
3851 3948 4.487948 CATGGTGTGAAAGTATTGGCAAG 58.512 43.478 5.96 0.00 0.00 4.01
3852 3949 3.561143 TGGTGTGAAAGTATTGGCAAGT 58.439 40.909 5.96 0.00 0.00 3.16
3853 3950 3.317711 TGGTGTGAAAGTATTGGCAAGTG 59.682 43.478 5.96 0.00 0.00 3.16
3854 3951 3.308530 GTGTGAAAGTATTGGCAAGTGC 58.691 45.455 5.96 0.00 41.14 4.40
3855 3952 2.954989 TGTGAAAGTATTGGCAAGTGCA 59.045 40.909 5.96 0.00 44.36 4.57
3856 3953 3.573538 TGTGAAAGTATTGGCAAGTGCAT 59.426 39.130 5.96 0.00 44.36 3.96
3857 3954 4.764308 TGTGAAAGTATTGGCAAGTGCATA 59.236 37.500 5.96 0.00 44.36 3.14
3858 3955 5.095490 GTGAAAGTATTGGCAAGTGCATAC 58.905 41.667 5.96 2.90 44.36 2.39
3859 3956 5.009631 TGAAAGTATTGGCAAGTGCATACT 58.990 37.500 5.96 5.36 40.06 2.12
3883 3980 9.708092 ACTTGATAGTACCTTTTCTCTTGTTAC 57.292 33.333 0.00 0.00 31.21 2.50
3901 3998 4.764823 TGTTACCATTCCATGTTTGACCTC 59.235 41.667 0.00 0.00 0.00 3.85
3915 4012 6.601332 TGTTTGACCTCTTCCAGTTATTCTT 58.399 36.000 0.00 0.00 0.00 2.52
3926 4023 5.569355 TCCAGTTATTCTTTTGATGCCAGA 58.431 37.500 0.00 0.00 0.00 3.86
3937 4034 7.993101 TCTTTTGATGCCAGAATATTTCTCTG 58.007 34.615 0.00 0.00 38.11 3.35
3950 4047 2.163818 TTCTCTGTTAACGCTGGTGG 57.836 50.000 0.26 0.00 0.00 4.61
3951 4048 0.320421 TCTCTGTTAACGCTGGTGGC 60.320 55.000 0.26 0.00 37.64 5.01
3966 4063 1.249407 GTGGCCATTTGTTTCCGGTA 58.751 50.000 9.72 0.00 0.00 4.02
3968 4065 2.096248 TGGCCATTTGTTTCCGGTATC 58.904 47.619 0.00 0.00 0.00 2.24
3973 4070 4.261801 CCATTTGTTTCCGGTATCTCAGT 58.738 43.478 0.00 0.00 0.00 3.41
3982 4079 2.166459 CCGGTATCTCAGTGAAGAAGCA 59.834 50.000 0.00 0.00 0.00 3.91
3985 4082 3.196685 GGTATCTCAGTGAAGAAGCAGGT 59.803 47.826 0.00 0.00 0.00 4.00
3995 4092 5.471456 AGTGAAGAAGCAGGTGAACTAATTG 59.529 40.000 0.00 0.00 0.00 2.32
4012 4109 7.516198 ACTAATTGAAACACTGCTTGAGAAT 57.484 32.000 0.00 0.00 0.00 2.40
4036 4133 2.186076 GACAAATCTCGTACAGCCTCG 58.814 52.381 0.00 0.00 0.00 4.63
4051 4148 1.070758 GCCTCGGAGATGGCTGATTTA 59.929 52.381 6.58 0.00 43.86 1.40
4099 4196 2.482664 CGTGAGGGATGTGAAGATGGAG 60.483 54.545 0.00 0.00 0.00 3.86
4105 4202 2.158842 GGATGTGAAGATGGAGGAGGTG 60.159 54.545 0.00 0.00 0.00 4.00
4122 4219 1.305633 TGCTGGAGGTCCTGAGGAG 60.306 63.158 0.00 0.00 37.15 3.69
4138 4235 1.546476 AGGAGACGATTTTCGCAGTCT 59.454 47.619 0.00 0.00 45.12 3.24
4141 4238 0.095417 GACGATTTTCGCAGTCTGGC 59.905 55.000 1.14 0.00 45.12 4.85
4156 4253 2.177594 CTGGCGTTGAGGAGAAGGCT 62.178 60.000 0.00 0.00 37.01 4.58
4236 4333 2.674420 GGCAGGGTGTAGTATGGAGTA 58.326 52.381 0.00 0.00 0.00 2.59
4252 4349 4.314740 GGAGTAGTCCAGTTCTGCTATG 57.685 50.000 12.02 0.00 43.31 2.23
4256 4353 4.645588 AGTAGTCCAGTTCTGCTATGGTAC 59.354 45.833 0.00 0.00 35.51 3.34
4281 4378 7.337942 ACCACCTGAGATTTATGTTTTCTCATC 59.662 37.037 2.63 0.00 43.50 2.92
4398 4495 7.609532 GGCCAATAAAGCATAATATGAGTCTCT 59.390 37.037 4.14 0.00 0.00 3.10
4399 4496 8.449397 GCCAATAAAGCATAATATGAGTCTCTG 58.551 37.037 4.14 0.00 0.00 3.35
4405 4504 5.784390 AGCATAATATGAGTCTCTGACCCAT 59.216 40.000 4.14 0.82 35.33 4.00
4484 4604 5.923733 ATGAGAGGACCTAGTTGTTACTG 57.076 43.478 0.00 0.00 35.78 2.74
4533 4657 5.230942 CCATGACAGGGATTACGAATAGAC 58.769 45.833 0.00 0.00 0.00 2.59
4534 4658 4.931661 TGACAGGGATTACGAATAGACC 57.068 45.455 0.00 0.00 0.00 3.85
4590 4720 7.113658 CAAGAGGACTTGCTAAATACTCCTA 57.886 40.000 0.00 0.00 45.19 2.94
4591 4721 6.718522 AGAGGACTTGCTAAATACTCCTAC 57.281 41.667 0.00 0.00 0.00 3.18
4593 4723 6.548251 AGAGGACTTGCTAAATACTCCTACTC 59.452 42.308 0.00 0.00 0.00 2.59
4594 4724 6.436890 AGGACTTGCTAAATACTCCTACTCT 58.563 40.000 0.00 0.00 0.00 3.24
4595 4725 6.898521 AGGACTTGCTAAATACTCCTACTCTT 59.101 38.462 0.00 0.00 0.00 2.85
4596 4726 7.400627 AGGACTTGCTAAATACTCCTACTCTTT 59.599 37.037 0.00 0.00 0.00 2.52
4597 4727 7.492994 GGACTTGCTAAATACTCCTACTCTTTG 59.507 40.741 0.00 0.00 0.00 2.77
4598 4728 7.908453 ACTTGCTAAATACTCCTACTCTTTGT 58.092 34.615 0.00 0.00 0.00 2.83
4599 4729 8.376270 ACTTGCTAAATACTCCTACTCTTTGTT 58.624 33.333 0.00 0.00 0.00 2.83
4650 4780 0.968405 AATGTTCATGTGGGTGGTGC 59.032 50.000 0.00 0.00 0.00 5.01
4652 4782 0.822944 TGTTCATGTGGGTGGTGCTG 60.823 55.000 0.00 0.00 0.00 4.41
4669 4799 4.546570 GTGCTGTTAGTTGGAATTTGACC 58.453 43.478 0.00 0.00 0.00 4.02
4670 4800 4.037446 GTGCTGTTAGTTGGAATTTGACCA 59.963 41.667 0.00 0.00 35.47 4.02
4671 4801 4.278170 TGCTGTTAGTTGGAATTTGACCAG 59.722 41.667 0.00 0.00 38.70 4.00
4672 4802 4.278419 GCTGTTAGTTGGAATTTGACCAGT 59.722 41.667 0.00 0.00 38.70 4.00
4673 4803 5.762045 CTGTTAGTTGGAATTTGACCAGTG 58.238 41.667 0.00 0.00 38.70 3.66
4674 4804 5.197451 TGTTAGTTGGAATTTGACCAGTGT 58.803 37.500 0.00 0.00 38.70 3.55
4675 4805 5.654650 TGTTAGTTGGAATTTGACCAGTGTT 59.345 36.000 0.00 0.00 38.70 3.32
4676 4806 4.918810 AGTTGGAATTTGACCAGTGTTC 57.081 40.909 0.00 0.00 38.70 3.18
4677 4807 3.636764 AGTTGGAATTTGACCAGTGTTCC 59.363 43.478 1.85 1.85 38.70 3.62
4678 4808 2.593026 TGGAATTTGACCAGTGTTCCC 58.407 47.619 5.70 0.00 38.00 3.97
4679 4809 1.893137 GGAATTTGACCAGTGTTCCCC 59.107 52.381 0.00 0.00 33.80 4.81
4680 4810 1.539827 GAATTTGACCAGTGTTCCCCG 59.460 52.381 0.00 0.00 0.00 5.73
4681 4811 0.893727 ATTTGACCAGTGTTCCCCGC 60.894 55.000 0.00 0.00 0.00 6.13
4682 4812 2.272230 TTTGACCAGTGTTCCCCGCA 62.272 55.000 0.00 0.00 0.00 5.69
4683 4813 2.112297 GACCAGTGTTCCCCGCAA 59.888 61.111 0.00 0.00 0.00 4.85
4684 4814 1.527380 GACCAGTGTTCCCCGCAAA 60.527 57.895 0.00 0.00 0.00 3.68
4685 4815 1.076632 ACCAGTGTTCCCCGCAAAA 60.077 52.632 0.00 0.00 0.00 2.44
4686 4816 0.684805 ACCAGTGTTCCCCGCAAAAA 60.685 50.000 0.00 0.00 0.00 1.94
4735 4865 2.370281 AGTGTCATTAGGTCGCTGTG 57.630 50.000 0.00 0.00 0.00 3.66
4760 4890 1.451651 CACCGAAAGCGAAAAATGCAC 59.548 47.619 0.00 0.00 40.82 4.57
4832 4962 7.595311 ATGGTTGTTTCACTCTTTTGTTTTC 57.405 32.000 0.00 0.00 0.00 2.29
4833 4963 5.631512 TGGTTGTTTCACTCTTTTGTTTTCG 59.368 36.000 0.00 0.00 0.00 3.46
4834 4964 5.631929 GGTTGTTTCACTCTTTTGTTTTCGT 59.368 36.000 0.00 0.00 0.00 3.85
4835 4965 6.144886 GGTTGTTTCACTCTTTTGTTTTCGTT 59.855 34.615 0.00 0.00 0.00 3.85
4836 4966 7.306925 GGTTGTTTCACTCTTTTGTTTTCGTTT 60.307 33.333 0.00 0.00 0.00 3.60
4837 4967 7.099666 TGTTTCACTCTTTTGTTTTCGTTTG 57.900 32.000 0.00 0.00 0.00 2.93
4838 4968 6.697892 TGTTTCACTCTTTTGTTTTCGTTTGT 59.302 30.769 0.00 0.00 0.00 2.83
4839 4969 7.222999 TGTTTCACTCTTTTGTTTTCGTTTGTT 59.777 29.630 0.00 0.00 0.00 2.83
4840 4970 7.701809 TTCACTCTTTTGTTTTCGTTTGTTT 57.298 28.000 0.00 0.00 0.00 2.83
4841 4971 7.099666 TCACTCTTTTGTTTTCGTTTGTTTG 57.900 32.000 0.00 0.00 0.00 2.93
4842 4972 6.144724 TCACTCTTTTGTTTTCGTTTGTTTGG 59.855 34.615 0.00 0.00 0.00 3.28
4843 4973 6.144724 CACTCTTTTGTTTTCGTTTGTTTGGA 59.855 34.615 0.00 0.00 0.00 3.53
4844 4974 6.702282 ACTCTTTTGTTTTCGTTTGTTTGGAA 59.298 30.769 0.00 0.00 0.00 3.53
4845 4975 7.095816 ACTCTTTTGTTTTCGTTTGTTTGGAAG 60.096 33.333 0.00 0.00 0.00 3.46
4846 4976 4.912528 TTGTTTTCGTTTGTTTGGAAGC 57.087 36.364 0.00 0.00 0.00 3.86
4847 4977 2.917971 TGTTTTCGTTTGTTTGGAAGCG 59.082 40.909 0.00 0.00 0.00 4.68
4848 4978 3.172824 GTTTTCGTTTGTTTGGAAGCGA 58.827 40.909 0.00 0.00 36.87 4.93
4849 4979 2.461897 TTCGTTTGTTTGGAAGCGAC 57.538 45.000 0.00 0.00 38.14 5.19
4850 4980 1.658994 TCGTTTGTTTGGAAGCGACT 58.341 45.000 0.00 0.00 34.21 4.18
4851 4981 1.329292 TCGTTTGTTTGGAAGCGACTG 59.671 47.619 0.00 0.00 34.21 3.51
4852 4982 1.329292 CGTTTGTTTGGAAGCGACTGA 59.671 47.619 0.00 0.00 31.88 3.41
4853 4983 2.716398 GTTTGTTTGGAAGCGACTGAC 58.284 47.619 0.00 0.00 0.00 3.51
4854 4984 0.934496 TTGTTTGGAAGCGACTGACG 59.066 50.000 0.00 0.00 45.66 4.35
4855 4985 0.103390 TGTTTGGAAGCGACTGACGA 59.897 50.000 3.29 0.00 45.77 4.20
4856 4986 0.507358 GTTTGGAAGCGACTGACGAC 59.493 55.000 3.29 0.00 45.77 4.34
4857 4987 0.599204 TTTGGAAGCGACTGACGACC 60.599 55.000 3.29 4.16 45.77 4.79
4858 4988 1.740332 TTGGAAGCGACTGACGACCA 61.740 55.000 3.29 6.58 45.77 4.02
4859 4989 1.215647 GGAAGCGACTGACGACCAT 59.784 57.895 3.29 0.00 45.77 3.55
4860 4990 1.078759 GGAAGCGACTGACGACCATG 61.079 60.000 3.29 0.00 45.77 3.66
4861 4991 0.388649 GAAGCGACTGACGACCATGT 60.389 55.000 3.29 0.00 45.77 3.21
4862 4992 0.667487 AAGCGACTGACGACCATGTG 60.667 55.000 3.29 0.00 45.77 3.21
4863 4993 2.730672 GCGACTGACGACCATGTGC 61.731 63.158 3.29 0.00 45.77 4.57
4864 4994 1.372872 CGACTGACGACCATGTGCA 60.373 57.895 0.00 0.00 45.77 4.57
4865 4995 0.943835 CGACTGACGACCATGTGCAA 60.944 55.000 0.00 0.00 45.77 4.08
4866 4996 1.442769 GACTGACGACCATGTGCAAT 58.557 50.000 0.00 0.00 0.00 3.56
4867 4997 2.616960 GACTGACGACCATGTGCAATA 58.383 47.619 0.00 0.00 0.00 1.90
4868 4998 3.000041 GACTGACGACCATGTGCAATAA 59.000 45.455 0.00 0.00 0.00 1.40
4869 4999 3.609853 ACTGACGACCATGTGCAATAAT 58.390 40.909 0.00 0.00 0.00 1.28
4870 5000 4.009675 ACTGACGACCATGTGCAATAATT 58.990 39.130 0.00 0.00 0.00 1.40
4871 5001 4.458989 ACTGACGACCATGTGCAATAATTT 59.541 37.500 0.00 0.00 0.00 1.82
4872 5002 5.645929 ACTGACGACCATGTGCAATAATTTA 59.354 36.000 0.00 0.00 0.00 1.40
4873 5003 6.318648 ACTGACGACCATGTGCAATAATTTAT 59.681 34.615 0.00 0.00 0.00 1.40
4874 5004 6.724263 TGACGACCATGTGCAATAATTTATC 58.276 36.000 0.00 0.00 0.00 1.75
4875 5005 5.747565 ACGACCATGTGCAATAATTTATCG 58.252 37.500 0.00 0.00 0.00 2.92
4876 5006 4.612614 CGACCATGTGCAATAATTTATCGC 59.387 41.667 0.00 0.00 0.00 4.58
4877 5007 4.536065 ACCATGTGCAATAATTTATCGCG 58.464 39.130 0.00 0.00 0.00 5.87
4878 5008 3.361644 CCATGTGCAATAATTTATCGCGC 59.638 43.478 0.00 6.04 0.00 6.86
4879 5009 3.961477 TGTGCAATAATTTATCGCGCT 57.039 38.095 12.64 0.00 34.29 5.92
4880 5010 4.285807 TGTGCAATAATTTATCGCGCTT 57.714 36.364 12.64 0.00 34.29 4.68
4881 5011 4.034350 TGTGCAATAATTTATCGCGCTTG 58.966 39.130 12.64 0.26 34.29 4.01
4882 5012 3.421888 GTGCAATAATTTATCGCGCTTGG 59.578 43.478 5.56 0.00 0.00 3.61
4883 5013 2.979813 GCAATAATTTATCGCGCTTGGG 59.020 45.455 5.56 0.00 0.00 4.12
4884 5014 2.979813 CAATAATTTATCGCGCTTGGGC 59.020 45.455 5.56 0.00 0.00 5.36
4900 5030 4.633980 GCGTTTTTGCCAGGACAG 57.366 55.556 0.00 0.00 0.00 3.51
4901 5031 1.007387 GCGTTTTTGCCAGGACAGG 60.007 57.895 0.00 0.00 0.00 4.00
4912 5042 3.241520 GGACAGGCCTATCACCCC 58.758 66.667 14.28 1.03 0.00 4.95
4913 5043 2.452937 GGACAGGCCTATCACCCCC 61.453 68.421 14.28 0.00 0.00 5.40
4914 5044 2.768344 ACAGGCCTATCACCCCCG 60.768 66.667 3.98 0.00 0.00 5.73
4915 5045 3.560251 CAGGCCTATCACCCCCGG 61.560 72.222 3.98 0.00 0.00 5.73
4919 5049 4.235762 CCTATCACCCCCGGCGTG 62.236 72.222 6.01 12.45 0.00 5.34
4920 5050 4.910585 CTATCACCCCCGGCGTGC 62.911 72.222 13.56 0.00 0.00 5.34
4934 5064 2.742372 GTGCAAGCGACGTCCCAT 60.742 61.111 10.58 0.00 0.00 4.00
4935 5065 2.031919 TGCAAGCGACGTCCCATT 59.968 55.556 10.58 0.00 0.00 3.16
4936 5066 1.599518 TGCAAGCGACGTCCCATTT 60.600 52.632 10.58 0.00 0.00 2.32
4937 5067 1.169661 TGCAAGCGACGTCCCATTTT 61.170 50.000 10.58 0.00 0.00 1.82
4938 5068 0.454452 GCAAGCGACGTCCCATTTTC 60.454 55.000 10.58 0.00 0.00 2.29
4939 5069 0.168128 CAAGCGACGTCCCATTTTCC 59.832 55.000 10.58 0.00 0.00 3.13
4940 5070 0.036306 AAGCGACGTCCCATTTTCCT 59.964 50.000 10.58 0.00 0.00 3.36
4941 5071 0.673644 AGCGACGTCCCATTTTCCTG 60.674 55.000 10.58 0.00 0.00 3.86
4942 5072 0.672401 GCGACGTCCCATTTTCCTGA 60.672 55.000 10.58 0.00 0.00 3.86
4943 5073 1.359848 CGACGTCCCATTTTCCTGAG 58.640 55.000 10.58 0.00 0.00 3.35
4944 5074 1.067142 CGACGTCCCATTTTCCTGAGA 60.067 52.381 10.58 0.00 0.00 3.27
4945 5075 2.418746 CGACGTCCCATTTTCCTGAGAT 60.419 50.000 10.58 0.00 0.00 2.75
4946 5076 3.181479 CGACGTCCCATTTTCCTGAGATA 60.181 47.826 10.58 0.00 0.00 1.98
4947 5077 4.679639 CGACGTCCCATTTTCCTGAGATAA 60.680 45.833 10.58 0.00 0.00 1.75
4948 5078 5.368989 GACGTCCCATTTTCCTGAGATAAT 58.631 41.667 3.51 0.00 0.00 1.28
4949 5079 6.494666 ACGTCCCATTTTCCTGAGATAATA 57.505 37.500 0.00 0.00 0.00 0.98
4950 5080 6.895782 ACGTCCCATTTTCCTGAGATAATAA 58.104 36.000 0.00 0.00 0.00 1.40
4951 5081 7.343357 ACGTCCCATTTTCCTGAGATAATAAA 58.657 34.615 0.00 0.00 0.00 1.40
4952 5082 7.832187 ACGTCCCATTTTCCTGAGATAATAAAA 59.168 33.333 0.00 0.00 0.00 1.52
4953 5083 8.850156 CGTCCCATTTTCCTGAGATAATAAAAT 58.150 33.333 0.00 0.00 31.67 1.82
4971 5101 8.842358 AATAAAATTCTGAAACACCTACGAGA 57.158 30.769 0.00 0.00 0.00 4.04
4972 5102 9.449719 AATAAAATTCTGAAACACCTACGAGAT 57.550 29.630 0.00 0.00 0.00 2.75
4974 5104 8.842358 AAAATTCTGAAACACCTACGAGATAA 57.158 30.769 0.00 0.00 0.00 1.75
4975 5105 8.842358 AAATTCTGAAACACCTACGAGATAAA 57.158 30.769 0.00 0.00 0.00 1.40
4976 5106 8.842358 AATTCTGAAACACCTACGAGATAAAA 57.158 30.769 0.00 0.00 0.00 1.52
4977 5107 9.449719 AATTCTGAAACACCTACGAGATAAAAT 57.550 29.630 0.00 0.00 0.00 1.82
4978 5108 8.842358 TTCTGAAACACCTACGAGATAAAATT 57.158 30.769 0.00 0.00 0.00 1.82
4979 5109 8.475331 TCTGAAACACCTACGAGATAAAATTC 57.525 34.615 0.00 0.00 0.00 2.17
4980 5110 8.311836 TCTGAAACACCTACGAGATAAAATTCT 58.688 33.333 0.00 0.00 0.00 2.40
4981 5111 8.251750 TGAAACACCTACGAGATAAAATTCTG 57.748 34.615 0.00 0.00 0.00 3.02
4982 5112 8.092068 TGAAACACCTACGAGATAAAATTCTGA 58.908 33.333 0.00 0.00 0.00 3.27
4983 5113 8.480643 AAACACCTACGAGATAAAATTCTGAG 57.519 34.615 0.00 0.00 0.00 3.35
4984 5114 7.406031 ACACCTACGAGATAAAATTCTGAGA 57.594 36.000 0.00 0.00 0.00 3.27
4985 5115 7.837863 ACACCTACGAGATAAAATTCTGAGAA 58.162 34.615 0.00 0.00 0.00 2.87
4986 5116 7.760340 ACACCTACGAGATAAAATTCTGAGAAC 59.240 37.037 0.00 0.00 0.00 3.01
4987 5117 7.222999 CACCTACGAGATAAAATTCTGAGAACC 59.777 40.741 0.00 0.00 0.00 3.62
4988 5118 7.124448 ACCTACGAGATAAAATTCTGAGAACCT 59.876 37.037 0.00 0.00 0.00 3.50
4989 5119 7.436673 CCTACGAGATAAAATTCTGAGAACCTG 59.563 40.741 0.00 0.00 0.00 4.00
4990 5120 5.582665 ACGAGATAAAATTCTGAGAACCTGC 59.417 40.000 0.00 0.00 0.00 4.85
4991 5121 5.276584 CGAGATAAAATTCTGAGAACCTGCG 60.277 44.000 0.00 0.00 0.00 5.18
4992 5122 2.997485 AAAATTCTGAGAACCTGCGC 57.003 45.000 0.00 0.00 0.00 6.09
4993 5123 1.896220 AAATTCTGAGAACCTGCGCA 58.104 45.000 10.98 10.98 0.00 6.09
4994 5124 1.896220 AATTCTGAGAACCTGCGCAA 58.104 45.000 13.05 0.00 0.00 4.85
4995 5125 1.896220 ATTCTGAGAACCTGCGCAAA 58.104 45.000 13.05 0.00 0.00 3.68
4996 5126 1.674359 TTCTGAGAACCTGCGCAAAA 58.326 45.000 13.05 0.00 0.00 2.44
4997 5127 0.944386 TCTGAGAACCTGCGCAAAAC 59.056 50.000 13.05 3.36 0.00 2.43
4998 5128 0.662619 CTGAGAACCTGCGCAAAACA 59.337 50.000 13.05 5.44 0.00 2.83
4999 5129 1.065401 CTGAGAACCTGCGCAAAACAA 59.935 47.619 13.05 0.00 0.00 2.83
5000 5130 1.474478 TGAGAACCTGCGCAAAACAAA 59.526 42.857 13.05 0.00 0.00 2.83
5001 5131 2.100584 TGAGAACCTGCGCAAAACAAAT 59.899 40.909 13.05 0.00 0.00 2.32
5002 5132 2.472488 GAGAACCTGCGCAAAACAAATG 59.528 45.455 13.05 0.00 0.00 2.32
5003 5133 2.159114 AGAACCTGCGCAAAACAAATGT 60.159 40.909 13.05 0.00 0.00 2.71
5004 5134 2.307934 ACCTGCGCAAAACAAATGTT 57.692 40.000 13.05 0.00 40.50 2.71
5005 5135 1.932511 ACCTGCGCAAAACAAATGTTG 59.067 42.857 13.05 0.00 38.44 3.33
5006 5136 1.261089 CCTGCGCAAAACAAATGTTGG 59.739 47.619 13.05 0.00 38.44 3.77
5007 5137 2.200067 CTGCGCAAAACAAATGTTGGA 58.800 42.857 13.05 0.00 38.44 3.53
5008 5138 2.606725 CTGCGCAAAACAAATGTTGGAA 59.393 40.909 13.05 0.00 38.44 3.53
5009 5139 3.201290 TGCGCAAAACAAATGTTGGAAT 58.799 36.364 8.16 0.00 38.44 3.01
5010 5140 4.371786 TGCGCAAAACAAATGTTGGAATA 58.628 34.783 8.16 0.00 38.44 1.75
5011 5141 4.993584 TGCGCAAAACAAATGTTGGAATAT 59.006 33.333 8.16 0.00 38.44 1.28
5012 5142 5.468072 TGCGCAAAACAAATGTTGGAATATT 59.532 32.000 8.16 0.00 38.44 1.28
5013 5143 6.646653 TGCGCAAAACAAATGTTGGAATATTA 59.353 30.769 8.16 0.00 38.44 0.98
5014 5144 7.148672 TGCGCAAAACAAATGTTGGAATATTAG 60.149 33.333 8.16 0.00 38.44 1.73
5015 5145 7.673776 GCGCAAAACAAATGTTGGAATATTAGG 60.674 37.037 0.30 0.00 38.44 2.69
5016 5146 7.463544 GCAAAACAAATGTTGGAATATTAGGC 58.536 34.615 0.00 0.00 38.44 3.93
5017 5147 7.118971 GCAAAACAAATGTTGGAATATTAGGCA 59.881 33.333 0.00 0.00 38.44 4.75
5018 5148 8.997323 CAAAACAAATGTTGGAATATTAGGCAA 58.003 29.630 0.00 0.00 38.44 4.52
5019 5149 8.776376 AAACAAATGTTGGAATATTAGGCAAG 57.224 30.769 0.00 0.00 38.44 4.01
5020 5150 7.480760 ACAAATGTTGGAATATTAGGCAAGT 57.519 32.000 0.00 0.00 34.12 3.16
5021 5151 7.906327 ACAAATGTTGGAATATTAGGCAAGTT 58.094 30.769 0.00 0.00 34.12 2.66
5022 5152 8.374743 ACAAATGTTGGAATATTAGGCAAGTTT 58.625 29.630 0.00 0.00 34.12 2.66
5023 5153 9.868277 CAAATGTTGGAATATTAGGCAAGTTTA 57.132 29.630 0.00 0.00 0.00 2.01
5026 5156 8.815565 TGTTGGAATATTAGGCAAGTTTATGA 57.184 30.769 0.00 0.00 0.00 2.15
5027 5157 9.420118 TGTTGGAATATTAGGCAAGTTTATGAT 57.580 29.630 0.00 0.00 0.00 2.45
5037 5167 7.961326 AGGCAAGTTTATGATTAATTCCAGT 57.039 32.000 0.00 0.00 0.00 4.00
5039 5169 9.474313 AGGCAAGTTTATGATTAATTCCAGTAA 57.526 29.630 0.00 0.00 0.00 2.24
5068 5198 8.932434 ATTCATGACTAGAAGAGATACTAGCA 57.068 34.615 0.00 0.00 39.47 3.49
5069 5199 8.932434 TTCATGACTAGAAGAGATACTAGCAT 57.068 34.615 0.00 0.00 39.47 3.79
5070 5200 8.334263 TCATGACTAGAAGAGATACTAGCATG 57.666 38.462 19.52 19.52 42.96 4.06
5071 5201 6.567687 TGACTAGAAGAGATACTAGCATGC 57.432 41.667 10.51 10.51 39.47 4.06
5072 5202 6.064717 TGACTAGAAGAGATACTAGCATGCA 58.935 40.000 21.98 5.01 39.47 3.96
5073 5203 6.547510 TGACTAGAAGAGATACTAGCATGCAA 59.452 38.462 21.98 2.20 39.47 4.08
5074 5204 7.232330 TGACTAGAAGAGATACTAGCATGCAAT 59.768 37.037 21.98 7.51 39.47 3.56
5075 5205 8.642935 ACTAGAAGAGATACTAGCATGCAATA 57.357 34.615 21.98 9.23 39.47 1.90
5076 5206 9.083422 ACTAGAAGAGATACTAGCATGCAATAA 57.917 33.333 21.98 2.60 39.47 1.40
5079 5209 8.814931 AGAAGAGATACTAGCATGCAATAATCT 58.185 33.333 21.98 20.35 0.00 2.40
5087 5217 8.915057 ACTAGCATGCAATAATCTATCAAACT 57.085 30.769 21.98 0.00 0.00 2.66
5091 5221 9.565090 AGCATGCAATAATCTATCAAACTAGAA 57.435 29.630 21.98 0.00 31.75 2.10
5092 5222 9.823098 GCATGCAATAATCTATCAAACTAGAAG 57.177 33.333 14.21 0.00 31.75 2.85
5101 5231 8.715191 ATCTATCAAACTAGAAGAACAGCAAG 57.285 34.615 0.00 0.00 31.75 4.01
5102 5232 7.896811 TCTATCAAACTAGAAGAACAGCAAGA 58.103 34.615 0.00 0.00 0.00 3.02
5103 5233 6.793492 ATCAAACTAGAAGAACAGCAAGAC 57.207 37.500 0.00 0.00 0.00 3.01
5104 5234 5.670485 TCAAACTAGAAGAACAGCAAGACA 58.330 37.500 0.00 0.00 0.00 3.41
5105 5235 6.291377 TCAAACTAGAAGAACAGCAAGACAT 58.709 36.000 0.00 0.00 0.00 3.06
5106 5236 6.203530 TCAAACTAGAAGAACAGCAAGACATG 59.796 38.462 0.00 0.00 0.00 3.21
5124 5254 2.420628 TGCATAACAGCAGCAAACAC 57.579 45.000 0.00 0.00 40.11 3.32
5125 5255 1.330306 GCATAACAGCAGCAAACACG 58.670 50.000 0.00 0.00 0.00 4.49
5126 5256 1.334960 GCATAACAGCAGCAAACACGT 60.335 47.619 0.00 0.00 0.00 4.49
5127 5257 2.095969 GCATAACAGCAGCAAACACGTA 60.096 45.455 0.00 0.00 0.00 3.57
5128 5258 3.608241 GCATAACAGCAGCAAACACGTAA 60.608 43.478 0.00 0.00 0.00 3.18
5129 5259 2.468532 AACAGCAGCAAACACGTAAC 57.531 45.000 0.00 0.00 0.00 2.50
5130 5260 1.374560 ACAGCAGCAAACACGTAACA 58.625 45.000 0.00 0.00 0.00 2.41
5131 5261 1.740585 ACAGCAGCAAACACGTAACAA 59.259 42.857 0.00 0.00 0.00 2.83
5132 5262 2.357637 ACAGCAGCAAACACGTAACAAT 59.642 40.909 0.00 0.00 0.00 2.71
5133 5263 3.562141 ACAGCAGCAAACACGTAACAATA 59.438 39.130 0.00 0.00 0.00 1.90
5134 5264 4.151070 CAGCAGCAAACACGTAACAATAG 58.849 43.478 0.00 0.00 0.00 1.73
5135 5265 2.908626 GCAGCAAACACGTAACAATAGC 59.091 45.455 0.00 0.00 0.00 2.97
5136 5266 3.364964 GCAGCAAACACGTAACAATAGCT 60.365 43.478 0.00 0.00 0.00 3.32
5137 5267 4.151070 CAGCAAACACGTAACAATAGCTG 58.849 43.478 0.00 0.00 40.57 4.24
5138 5268 3.813166 AGCAAACACGTAACAATAGCTGT 59.187 39.130 0.00 0.00 41.27 4.40
5139 5269 4.992319 AGCAAACACGTAACAATAGCTGTA 59.008 37.500 0.00 0.00 37.23 2.74
5140 5270 5.120208 AGCAAACACGTAACAATAGCTGTAG 59.880 40.000 0.00 0.00 37.23 2.74
5141 5271 5.119588 GCAAACACGTAACAATAGCTGTAGA 59.880 40.000 0.00 0.00 37.23 2.59
5142 5272 6.347079 GCAAACACGTAACAATAGCTGTAGAA 60.347 38.462 0.00 0.00 37.23 2.10
5143 5273 7.569297 CAAACACGTAACAATAGCTGTAGAAA 58.431 34.615 0.00 0.00 37.23 2.52
5144 5274 6.701432 ACACGTAACAATAGCTGTAGAAAC 57.299 37.500 0.00 0.00 37.23 2.78
5145 5275 6.218019 ACACGTAACAATAGCTGTAGAAACA 58.782 36.000 0.00 0.00 37.23 2.83
5159 5289 5.541845 TGTAGAAACAGACATGAACAGAGG 58.458 41.667 0.00 0.00 0.00 3.69
5160 5290 4.963318 AGAAACAGACATGAACAGAGGA 57.037 40.909 0.00 0.00 0.00 3.71
5161 5291 5.495926 AGAAACAGACATGAACAGAGGAT 57.504 39.130 0.00 0.00 0.00 3.24
5162 5292 5.243981 AGAAACAGACATGAACAGAGGATG 58.756 41.667 0.00 0.00 0.00 3.51
5163 5293 4.630644 AACAGACATGAACAGAGGATGT 57.369 40.909 0.00 0.00 46.97 3.06
5173 5303 2.526432 ACAGAGGATGTTGGACGTACT 58.474 47.619 0.00 0.00 39.96 2.73
5174 5304 2.231478 ACAGAGGATGTTGGACGTACTG 59.769 50.000 0.00 0.00 39.96 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 71 2.047274 AACCGCATCGTGGTGGAG 60.047 61.111 14.03 0.00 46.56 3.86
204 212 4.451150 GACGAGGCCATGGCACGA 62.451 66.667 40.76 0.00 44.11 4.35
312 324 2.123982 GCCTGCCATAGCTGCCTT 60.124 61.111 0.00 0.00 40.80 4.35
440 452 0.467659 CCCCCGAGGAGATAGTCGTT 60.468 60.000 0.00 0.00 38.24 3.85
464 478 2.038329 ACCCCGAACTCATCCCGA 59.962 61.111 0.00 0.00 0.00 5.14
538 552 1.751162 CTCGTCTCCGGCTCCTTCT 60.751 63.158 0.00 0.00 33.95 2.85
580 602 0.252467 CCACTTCACTCCTCCTCCCT 60.252 60.000 0.00 0.00 0.00 4.20
587 609 0.117340 ACCCTAGCCACTTCACTCCT 59.883 55.000 0.00 0.00 0.00 3.69
695 727 6.037949 TCCAAATATGAGATGGATATGGGGA 58.962 40.000 0.00 0.00 38.30 4.81
741 774 2.998480 TCTCAAACGCCCGGGCTA 60.998 61.111 41.01 20.49 39.32 3.93
773 817 5.179368 GGTCATGACTTTTTGATTCAGACGA 59.821 40.000 24.50 0.00 0.00 4.20
780 824 3.496331 ACCCGGTCATGACTTTTTGATT 58.504 40.909 24.50 0.00 0.00 2.57
789 833 0.953960 GGTCACAACCCGGTCATGAC 60.954 60.000 17.91 17.91 39.93 3.06
815 859 0.033504 GTCTCAAACGTCTGGGCAGA 59.966 55.000 0.00 0.00 34.56 4.26
817 861 1.300620 CGTCTCAAACGTCTGGGCA 60.301 57.895 0.00 0.00 46.42 5.36
841 885 0.909623 CATCTACAACCGGACCCCTT 59.090 55.000 9.46 0.00 0.00 3.95
872 916 3.488778 AGCTATGCTTGATGGAGGAAG 57.511 47.619 0.00 0.00 33.89 3.46
877 921 2.288457 GCGACTAGCTATGCTTGATGGA 60.288 50.000 7.87 0.00 44.04 3.41
900 944 1.070758 TGAGTCTCTCAAAGGCACACC 59.929 52.381 0.65 0.00 37.57 4.16
1216 1262 0.811281 GGGAGAAGATTTTGCGGGTG 59.189 55.000 0.00 0.00 0.00 4.61
1263 1309 2.908351 GTCCACCCCAGTTCCTAACTTA 59.092 50.000 0.00 0.00 40.46 2.24
1335 1381 2.483877 TGTGCAGGTTTCGCATAAGAAG 59.516 45.455 0.00 0.00 42.32 2.85
1350 1396 7.486802 TTCATGATGTCACTATATTGTGCAG 57.513 36.000 11.85 3.54 37.81 4.41
1431 1477 3.330701 TCCTCCCACTGTCTTAATGCTTT 59.669 43.478 0.00 0.00 0.00 3.51
1442 1488 2.278245 TGGATGAATTCCTCCCACTGT 58.722 47.619 22.56 0.00 45.68 3.55
1499 1546 9.419297 CATTTGATTATATTCCTGCAGAATTGG 57.581 33.333 17.39 0.00 42.86 3.16
1686 1733 2.535984 GACGATGACAAGCCGATGTTAG 59.464 50.000 0.00 0.00 32.57 2.34
1987 2034 1.656652 ACCGCTCTGATGCATAACAC 58.343 50.000 0.00 0.00 0.00 3.32
2053 2100 9.351570 GCGTACCAAGGTATATTATCTAACTTC 57.648 37.037 1.74 0.00 32.82 3.01
2370 2419 4.083696 CGGAGCAACACTTACCGTATTTTT 60.084 41.667 0.00 0.00 38.97 1.94
2429 2511 8.940768 TCGATTGTCTTGACACATTAATGATA 57.059 30.769 22.16 2.49 0.00 2.15
2455 2537 9.918630 AAACAAAGAACTACTACGCTATTCTAA 57.081 29.630 0.00 0.00 0.00 2.10
2478 2560 6.174049 ACAAGATAAACCAGGCTAGAGAAAC 58.826 40.000 0.00 0.00 0.00 2.78
2511 2593 7.930865 TGTCCATATCGAACAATAATGATGACA 59.069 33.333 0.00 0.00 0.00 3.58
2522 2604 7.014808 TCACCAGTATATGTCCATATCGAACAA 59.985 37.037 3.14 0.00 35.71 2.83
2527 2609 7.199078 CAGATCACCAGTATATGTCCATATCG 58.801 42.308 3.14 0.00 35.71 2.92
2568 2650 3.067684 AGGCTGCCGTTTAGTAACAAT 57.932 42.857 13.96 0.00 33.75 2.71
2579 2661 0.324943 ATTCTGTTGTAGGCTGCCGT 59.675 50.000 13.96 4.43 0.00 5.68
2609 2691 9.632807 AATGTTATATAGCGCTTTTCAACAAAA 57.367 25.926 18.68 0.00 0.00 2.44
2613 2695 8.614994 AACAATGTTATATAGCGCTTTTCAAC 57.385 30.769 18.68 15.67 0.00 3.18
2659 2741 6.143598 TGACAAAAATGCGTAATGTTCATGTG 59.856 34.615 0.00 0.00 0.00 3.21
2660 2742 6.143758 GTGACAAAAATGCGTAATGTTCATGT 59.856 34.615 0.00 0.00 0.00 3.21
2706 2788 4.716784 TCCAGGAACTACTGTCATAATGCT 59.283 41.667 0.00 0.00 36.02 3.79
2707 2789 5.023533 TCCAGGAACTACTGTCATAATGC 57.976 43.478 0.00 0.00 36.02 3.56
2716 2798 6.227298 ACTACATTCATCCAGGAACTACTG 57.773 41.667 0.00 0.00 36.02 2.74
2758 2840 4.040339 ACTGCCAATCTTTTTAACCCTTGG 59.960 41.667 0.00 0.00 36.94 3.61
2898 2980 2.633967 AGCTTCCCATTCAACATTTGCA 59.366 40.909 0.00 0.00 0.00 4.08
2912 2994 3.912496 AAATTTGGGCATTAGCTTCCC 57.088 42.857 0.00 0.00 41.70 3.97
2957 3039 9.941664 CTTACTAATGAGCCAATATCAACAAAG 57.058 33.333 0.00 0.00 0.00 2.77
3050 3132 8.750172 ACCCCTACTTATTTTATAGGAGTCCTA 58.250 37.037 21.30 21.30 40.71 2.94
3062 3144 6.178324 GTCACAAGCTACCCCTACTTATTTT 58.822 40.000 0.00 0.00 0.00 1.82
3066 3148 3.781808 TGTCACAAGCTACCCCTACTTA 58.218 45.455 0.00 0.00 0.00 2.24
3067 3149 2.616524 TGTCACAAGCTACCCCTACTT 58.383 47.619 0.00 0.00 0.00 2.24
3069 3151 3.629142 ATTGTCACAAGCTACCCCTAC 57.371 47.619 0.00 0.00 0.00 3.18
3135 3218 9.617975 GAGAGAATTGTTTCTATCAAAAACAGG 57.382 33.333 5.69 0.00 45.44 4.00
3337 3424 3.633986 AGCAGCTAACAGAAGCAAAACTT 59.366 39.130 0.00 0.00 45.30 2.66
3347 3434 3.181455 TGTTCAAAGGAGCAGCTAACAGA 60.181 43.478 0.00 0.00 30.21 3.41
3374 3463 6.287525 TCGGACAAATGCATTCTGTCATATA 58.712 36.000 32.15 21.17 41.03 0.86
3544 3635 7.944729 AAAGTTATTCCAGCTGATACATTGT 57.055 32.000 17.39 0.00 0.00 2.71
3567 3658 5.542635 TCTTCTTAGGTTAGCCTCTGACAAA 59.457 40.000 0.00 0.00 45.64 2.83
3568 3659 5.084519 TCTTCTTAGGTTAGCCTCTGACAA 58.915 41.667 0.00 0.00 45.64 3.18
3607 3698 3.488553 CGTTGCACCTCATATGTACTCGA 60.489 47.826 1.90 0.00 0.00 4.04
3629 3720 0.751643 ACTCCATACCAAATGGCGCC 60.752 55.000 22.73 22.73 39.01 6.53
3650 3741 7.861872 TCGCTTATATTGTTATACACGTAGCAA 59.138 33.333 0.00 0.00 0.00 3.91
3667 3758 8.445275 TGGTATGTTGAAATTGTCGCTTATAT 57.555 30.769 0.00 0.00 0.00 0.86
3675 3766 9.474920 TGAGAAAAATGGTATGTTGAAATTGTC 57.525 29.630 0.00 0.00 0.00 3.18
3720 3815 6.608405 TCGAATAACCCACCTATCAGTCTAAA 59.392 38.462 0.00 0.00 0.00 1.85
3722 3817 5.533903 GTCGAATAACCCACCTATCAGTCTA 59.466 44.000 0.00 0.00 0.00 2.59
3790 3887 6.511416 AGAGAGAGATGAATCGTTACAATGG 58.489 40.000 0.00 0.00 0.00 3.16
3793 3890 8.282455 ACTTAGAGAGAGATGAATCGTTACAA 57.718 34.615 0.00 0.00 0.00 2.41
3815 3912 5.693961 TCACACCATGCCATCAATATACTT 58.306 37.500 0.00 0.00 0.00 2.24
3818 3915 6.128486 ACTTTCACACCATGCCATCAATATA 58.872 36.000 0.00 0.00 0.00 0.86
3849 3946 8.322091 AGAAAAGGTACTATCAAGTATGCACTT 58.678 33.333 0.00 0.00 42.14 3.16
3850 3947 7.852263 AGAAAAGGTACTATCAAGTATGCACT 58.148 34.615 0.00 0.00 40.30 4.40
3851 3948 7.982354 AGAGAAAAGGTACTATCAAGTATGCAC 59.018 37.037 0.00 0.00 40.30 4.57
3852 3949 8.079211 AGAGAAAAGGTACTATCAAGTATGCA 57.921 34.615 0.00 0.00 40.30 3.96
3853 3950 8.821894 CAAGAGAAAAGGTACTATCAAGTATGC 58.178 37.037 0.00 0.00 40.30 3.14
3854 3951 9.877178 ACAAGAGAAAAGGTACTATCAAGTATG 57.123 33.333 0.00 0.00 40.30 2.39
3857 3954 9.708092 GTAACAAGAGAAAAGGTACTATCAAGT 57.292 33.333 0.00 0.00 38.49 3.16
3858 3955 9.152595 GGTAACAAGAGAAAAGGTACTATCAAG 57.847 37.037 0.00 0.00 38.49 3.02
3883 3980 6.838755 CTGGAAGAGGTCAAACATGGAATGG 61.839 48.000 0.00 0.00 43.95 3.16
3901 3998 6.151648 TCTGGCATCAAAAGAATAACTGGAAG 59.848 38.462 0.00 0.00 42.29 3.46
3915 4012 7.707624 AACAGAGAAATATTCTGGCATCAAA 57.292 32.000 7.61 0.00 44.96 2.69
3926 4023 5.354234 CCACCAGCGTTAACAGAGAAATATT 59.646 40.000 6.39 0.00 0.00 1.28
3937 4034 0.601057 AAATGGCCACCAGCGTTAAC 59.399 50.000 8.16 0.00 45.17 2.01
3950 4047 3.013921 TGAGATACCGGAAACAAATGGC 58.986 45.455 9.46 0.00 0.00 4.40
3951 4048 4.094887 CACTGAGATACCGGAAACAAATGG 59.905 45.833 9.46 0.00 0.00 3.16
3966 4063 2.902486 TCACCTGCTTCTTCACTGAGAT 59.098 45.455 0.00 0.00 0.00 2.75
3968 4065 2.805099 GTTCACCTGCTTCTTCACTGAG 59.195 50.000 0.00 0.00 0.00 3.35
3973 4070 5.620206 TCAATTAGTTCACCTGCTTCTTCA 58.380 37.500 0.00 0.00 0.00 3.02
3982 4079 5.133221 AGCAGTGTTTCAATTAGTTCACCT 58.867 37.500 0.00 0.00 0.00 4.00
3985 4082 6.542005 TCTCAAGCAGTGTTTCAATTAGTTCA 59.458 34.615 0.00 0.00 0.00 3.18
3995 4092 4.067896 TCCTCATTCTCAAGCAGTGTTTC 58.932 43.478 0.00 0.00 0.00 2.78
4012 4109 2.094182 GGCTGTACGAGATTTGTCCTCA 60.094 50.000 0.00 0.00 0.00 3.86
4036 4133 4.141711 TGGTACAGTAAATCAGCCATCTCC 60.142 45.833 0.00 0.00 0.00 3.71
4075 4172 0.247460 TCTTCACATCCCTCACGCTG 59.753 55.000 0.00 0.00 0.00 5.18
4099 4196 2.284995 AGGACCTCCAGCACCTCC 60.285 66.667 0.00 0.00 38.89 4.30
4105 4202 1.000993 TCTCCTCAGGACCTCCAGC 59.999 63.158 0.00 0.00 38.89 4.85
4122 4219 0.095417 GCCAGACTGCGAAAATCGTC 59.905 55.000 0.00 0.00 42.81 4.20
4138 4235 0.902984 TAGCCTTCTCCTCAACGCCA 60.903 55.000 0.00 0.00 0.00 5.69
4141 4238 0.179097 GGCTAGCCTTCTCCTCAACG 60.179 60.000 27.17 0.00 0.00 4.10
4156 4253 3.260475 TGCTAAGATTTCTTGCGGCTA 57.740 42.857 0.00 0.00 37.40 3.93
4236 4333 2.766828 GGTACCATAGCAGAACTGGACT 59.233 50.000 7.15 0.00 34.08 3.85
4243 4340 2.766263 CTCAGGTGGTACCATAGCAGAA 59.234 50.000 19.72 0.00 41.95 3.02
4245 4342 2.388735 TCTCAGGTGGTACCATAGCAG 58.611 52.381 19.72 12.15 41.95 4.24
4248 4345 7.067496 ACATAAATCTCAGGTGGTACCATAG 57.933 40.000 19.72 13.22 41.95 2.23
4251 4348 5.772393 AACATAAATCTCAGGTGGTACCA 57.228 39.130 11.60 11.60 41.95 3.25
4252 4349 6.884836 AGAAAACATAAATCTCAGGTGGTACC 59.115 38.462 4.43 4.43 38.99 3.34
4281 4378 5.806502 CACAGTCTTCTTCTTAGAGAGCATG 59.193 44.000 0.00 0.00 0.00 4.06
4332 4429 0.040067 GCGACTGTGCAAGGGAAAAG 60.040 55.000 0.00 0.00 34.15 2.27
4463 4568 4.737578 ACAGTAACAACTAGGTCCTCTCA 58.262 43.478 0.00 0.00 0.00 3.27
4484 4604 6.365247 CACAGTACATAGAACACCACAAGTAC 59.635 42.308 0.00 0.00 0.00 2.73
4533 4657 6.260271 ACTTCTTTCTTCCAGTAAACTTTCGG 59.740 38.462 0.00 0.00 0.00 4.30
4534 4658 7.247929 ACTTCTTTCTTCCAGTAAACTTTCG 57.752 36.000 0.00 0.00 0.00 3.46
4584 4714 1.985895 CCCCCAACAAAGAGTAGGAGT 59.014 52.381 0.00 0.00 0.00 3.85
4588 4718 3.502123 TTCACCCCCAACAAAGAGTAG 57.498 47.619 0.00 0.00 0.00 2.57
4590 4720 2.838637 TTTCACCCCCAACAAAGAGT 57.161 45.000 0.00 0.00 0.00 3.24
4591 4721 3.450817 ACTTTTTCACCCCCAACAAAGAG 59.549 43.478 0.00 0.00 0.00 2.85
4593 4723 3.904800 ACTTTTTCACCCCCAACAAAG 57.095 42.857 0.00 0.00 0.00 2.77
4594 4724 3.328050 ACAACTTTTTCACCCCCAACAAA 59.672 39.130 0.00 0.00 0.00 2.83
4595 4725 2.907042 ACAACTTTTTCACCCCCAACAA 59.093 40.909 0.00 0.00 0.00 2.83
4596 4726 2.234908 CACAACTTTTTCACCCCCAACA 59.765 45.455 0.00 0.00 0.00 3.33
4597 4727 2.235155 ACACAACTTTTTCACCCCCAAC 59.765 45.455 0.00 0.00 0.00 3.77
4598 4728 2.541466 ACACAACTTTTTCACCCCCAA 58.459 42.857 0.00 0.00 0.00 4.12
4599 4729 2.239681 ACACAACTTTTTCACCCCCA 57.760 45.000 0.00 0.00 0.00 4.96
4633 4763 0.822944 CAGCACCACCCACATGAACA 60.823 55.000 0.00 0.00 0.00 3.18
4650 4780 5.299279 ACACTGGTCAAATTCCAACTAACAG 59.701 40.000 0.00 0.00 34.35 3.16
4652 4782 5.767816 ACACTGGTCAAATTCCAACTAAC 57.232 39.130 0.00 0.00 34.35 2.34
4712 4842 3.128938 ACAGCGACCTAATGACACTAGTC 59.871 47.826 0.00 0.00 45.19 2.59
4713 4843 3.090037 ACAGCGACCTAATGACACTAGT 58.910 45.455 0.00 0.00 0.00 2.57
4714 4844 3.439293 CACAGCGACCTAATGACACTAG 58.561 50.000 0.00 0.00 0.00 2.57
4717 4847 0.721718 GCACAGCGACCTAATGACAC 59.278 55.000 0.00 0.00 0.00 3.67
4735 4865 0.165079 TTTTCGCTTTCGGTGATCGC 59.835 50.000 0.00 0.00 39.05 4.58
4760 4890 2.961522 AATGTGGAAAACAGTACGCG 57.038 45.000 3.53 3.53 43.64 6.01
4832 4962 1.329292 TCAGTCGCTTCCAAACAAACG 59.671 47.619 0.00 0.00 0.00 3.60
4833 4963 2.716398 GTCAGTCGCTTCCAAACAAAC 58.284 47.619 0.00 0.00 0.00 2.93
4834 4964 1.329292 CGTCAGTCGCTTCCAAACAAA 59.671 47.619 0.00 0.00 0.00 2.83
4835 4965 0.934496 CGTCAGTCGCTTCCAAACAA 59.066 50.000 0.00 0.00 0.00 2.83
4836 4966 0.103390 TCGTCAGTCGCTTCCAAACA 59.897 50.000 0.00 0.00 39.67 2.83
4837 4967 0.507358 GTCGTCAGTCGCTTCCAAAC 59.493 55.000 0.00 0.00 39.67 2.93
4838 4968 0.599204 GGTCGTCAGTCGCTTCCAAA 60.599 55.000 0.00 0.00 39.67 3.28
4839 4969 1.006571 GGTCGTCAGTCGCTTCCAA 60.007 57.895 0.00 0.00 39.67 3.53
4840 4970 1.532604 ATGGTCGTCAGTCGCTTCCA 61.533 55.000 0.00 0.00 39.67 3.53
4841 4971 1.078759 CATGGTCGTCAGTCGCTTCC 61.079 60.000 0.00 0.00 39.67 3.46
4842 4972 0.388649 ACATGGTCGTCAGTCGCTTC 60.389 55.000 0.00 0.00 39.67 3.86
4843 4973 0.667487 CACATGGTCGTCAGTCGCTT 60.667 55.000 0.00 0.00 39.67 4.68
4844 4974 1.080501 CACATGGTCGTCAGTCGCT 60.081 57.895 0.00 0.00 39.67 4.93
4845 4975 2.730672 GCACATGGTCGTCAGTCGC 61.731 63.158 0.00 0.00 39.67 5.19
4846 4976 0.943835 TTGCACATGGTCGTCAGTCG 60.944 55.000 0.00 0.00 41.41 4.18
4847 4977 1.442769 ATTGCACATGGTCGTCAGTC 58.557 50.000 0.00 0.00 0.00 3.51
4848 4978 2.760634 TATTGCACATGGTCGTCAGT 57.239 45.000 0.00 0.00 0.00 3.41
4849 4979 4.621068 AATTATTGCACATGGTCGTCAG 57.379 40.909 0.00 0.00 0.00 3.51
4850 4980 6.510960 CGATAAATTATTGCACATGGTCGTCA 60.511 38.462 0.00 0.00 0.00 4.35
4851 4981 5.845953 CGATAAATTATTGCACATGGTCGTC 59.154 40.000 0.00 0.00 0.00 4.20
4852 4982 5.747565 CGATAAATTATTGCACATGGTCGT 58.252 37.500 0.00 0.00 0.00 4.34
4853 4983 4.612614 GCGATAAATTATTGCACATGGTCG 59.387 41.667 17.81 1.49 43.58 4.79
4854 4984 4.612614 CGCGATAAATTATTGCACATGGTC 59.387 41.667 21.25 0.00 44.19 4.02
4855 4985 4.536065 CGCGATAAATTATTGCACATGGT 58.464 39.130 21.25 0.00 44.19 3.55
4856 4986 3.361644 GCGCGATAAATTATTGCACATGG 59.638 43.478 21.25 8.70 44.19 3.66
4857 4987 4.221342 AGCGCGATAAATTATTGCACATG 58.779 39.130 21.25 9.00 44.19 3.21
4858 4988 4.488126 AGCGCGATAAATTATTGCACAT 57.512 36.364 21.25 6.92 44.19 3.21
4859 4989 3.961477 AGCGCGATAAATTATTGCACA 57.039 38.095 21.25 0.00 44.19 4.57
4860 4990 3.421888 CCAAGCGCGATAAATTATTGCAC 59.578 43.478 21.25 13.77 44.19 4.57
4861 4991 3.549827 CCCAAGCGCGATAAATTATTGCA 60.550 43.478 21.25 0.00 44.19 4.08
4862 4992 2.979813 CCCAAGCGCGATAAATTATTGC 59.020 45.455 12.10 13.80 41.25 3.56
4863 4993 2.979813 GCCCAAGCGCGATAAATTATTG 59.020 45.455 12.10 0.00 0.00 1.90
4864 4994 3.282831 GCCCAAGCGCGATAAATTATT 57.717 42.857 12.10 0.00 0.00 1.40
4865 4995 2.989422 GCCCAAGCGCGATAAATTAT 57.011 45.000 12.10 0.00 0.00 1.28
4883 5013 1.007387 CCTGTCCTGGCAAAAACGC 60.007 57.895 0.00 0.00 0.00 4.84
4892 5022 1.700042 GGGTGATAGGCCTGTCCTGG 61.700 65.000 25.10 0.00 46.98 4.45
4893 5023 1.700042 GGGGTGATAGGCCTGTCCTG 61.700 65.000 25.10 0.00 46.98 3.86
4895 5025 2.452937 GGGGGTGATAGGCCTGTCC 61.453 68.421 25.10 16.28 0.00 4.02
4896 5026 2.808206 CGGGGGTGATAGGCCTGTC 61.808 68.421 21.91 21.91 0.00 3.51
4897 5027 2.768344 CGGGGGTGATAGGCCTGT 60.768 66.667 17.99 9.34 0.00 4.00
4898 5028 3.560251 CCGGGGGTGATAGGCCTG 61.560 72.222 17.99 0.00 0.00 4.85
4917 5047 1.852067 AAATGGGACGTCGCTTGCAC 61.852 55.000 29.62 5.71 0.00 4.57
4918 5048 1.169661 AAAATGGGACGTCGCTTGCA 61.170 50.000 29.62 12.90 0.00 4.08
4919 5049 0.454452 GAAAATGGGACGTCGCTTGC 60.454 55.000 29.62 14.26 0.00 4.01
4920 5050 0.168128 GGAAAATGGGACGTCGCTTG 59.832 55.000 29.62 0.00 0.00 4.01
4921 5051 0.036306 AGGAAAATGGGACGTCGCTT 59.964 50.000 29.62 22.16 0.00 4.68
4922 5052 0.673644 CAGGAAAATGGGACGTCGCT 60.674 55.000 29.62 12.57 0.00 4.93
4923 5053 0.672401 TCAGGAAAATGGGACGTCGC 60.672 55.000 24.41 24.41 0.00 5.19
4924 5054 1.067142 TCTCAGGAAAATGGGACGTCG 60.067 52.381 9.92 0.00 0.00 5.12
4925 5055 2.762535 TCTCAGGAAAATGGGACGTC 57.237 50.000 7.13 7.13 0.00 4.34
4926 5056 4.837093 TTATCTCAGGAAAATGGGACGT 57.163 40.909 0.00 0.00 30.90 4.34
4927 5057 7.801716 TTTATTATCTCAGGAAAATGGGACG 57.198 36.000 0.00 0.00 30.90 4.79
4945 5075 9.932207 TCTCGTAGGTGTTTCAGAATTTTATTA 57.068 29.630 0.00 0.00 0.00 0.98
4946 5076 8.842358 TCTCGTAGGTGTTTCAGAATTTTATT 57.158 30.769 0.00 0.00 0.00 1.40
4948 5078 9.932207 TTATCTCGTAGGTGTTTCAGAATTTTA 57.068 29.630 0.00 0.00 0.00 1.52
4949 5079 8.842358 TTATCTCGTAGGTGTTTCAGAATTTT 57.158 30.769 0.00 0.00 0.00 1.82
4950 5080 8.842358 TTTATCTCGTAGGTGTTTCAGAATTT 57.158 30.769 0.00 0.00 0.00 1.82
4951 5081 8.842358 TTTTATCTCGTAGGTGTTTCAGAATT 57.158 30.769 0.00 0.00 0.00 2.17
4952 5082 9.449719 AATTTTATCTCGTAGGTGTTTCAGAAT 57.550 29.630 0.00 0.00 0.00 2.40
4953 5083 8.842358 AATTTTATCTCGTAGGTGTTTCAGAA 57.158 30.769 0.00 0.00 0.00 3.02
4954 5084 8.311836 AGAATTTTATCTCGTAGGTGTTTCAGA 58.688 33.333 0.00 0.00 0.00 3.27
4955 5085 8.383619 CAGAATTTTATCTCGTAGGTGTTTCAG 58.616 37.037 0.00 0.00 0.00 3.02
4956 5086 8.092068 TCAGAATTTTATCTCGTAGGTGTTTCA 58.908 33.333 0.00 0.00 0.00 2.69
4957 5087 8.475331 TCAGAATTTTATCTCGTAGGTGTTTC 57.525 34.615 0.00 0.00 0.00 2.78
4958 5088 8.311836 TCTCAGAATTTTATCTCGTAGGTGTTT 58.688 33.333 0.00 0.00 0.00 2.83
4959 5089 7.837863 TCTCAGAATTTTATCTCGTAGGTGTT 58.162 34.615 0.00 0.00 0.00 3.32
4960 5090 7.406031 TCTCAGAATTTTATCTCGTAGGTGT 57.594 36.000 0.00 0.00 0.00 4.16
4961 5091 7.222999 GGTTCTCAGAATTTTATCTCGTAGGTG 59.777 40.741 0.00 0.00 0.00 4.00
4962 5092 7.124448 AGGTTCTCAGAATTTTATCTCGTAGGT 59.876 37.037 0.00 0.00 0.00 3.08
4963 5093 7.436673 CAGGTTCTCAGAATTTTATCTCGTAGG 59.563 40.741 0.00 0.00 0.00 3.18
4964 5094 7.043059 GCAGGTTCTCAGAATTTTATCTCGTAG 60.043 40.741 0.00 0.00 0.00 3.51
4965 5095 6.757010 GCAGGTTCTCAGAATTTTATCTCGTA 59.243 38.462 0.00 0.00 0.00 3.43
4966 5096 5.582665 GCAGGTTCTCAGAATTTTATCTCGT 59.417 40.000 0.00 0.00 0.00 4.18
4967 5097 5.276584 CGCAGGTTCTCAGAATTTTATCTCG 60.277 44.000 0.00 0.00 0.00 4.04
4968 5098 5.503194 GCGCAGGTTCTCAGAATTTTATCTC 60.503 44.000 0.30 0.00 0.00 2.75
4969 5099 4.333926 GCGCAGGTTCTCAGAATTTTATCT 59.666 41.667 0.30 0.00 0.00 1.98
4970 5100 4.094887 TGCGCAGGTTCTCAGAATTTTATC 59.905 41.667 5.66 0.00 0.00 1.75
4971 5101 4.009675 TGCGCAGGTTCTCAGAATTTTAT 58.990 39.130 5.66 0.00 0.00 1.40
4972 5102 3.407698 TGCGCAGGTTCTCAGAATTTTA 58.592 40.909 5.66 0.00 0.00 1.52
4973 5103 2.229792 TGCGCAGGTTCTCAGAATTTT 58.770 42.857 5.66 0.00 0.00 1.82
4974 5104 1.896220 TGCGCAGGTTCTCAGAATTT 58.104 45.000 5.66 0.00 0.00 1.82
4975 5105 1.896220 TTGCGCAGGTTCTCAGAATT 58.104 45.000 11.31 0.00 0.00 2.17
4976 5106 1.896220 TTTGCGCAGGTTCTCAGAAT 58.104 45.000 11.31 0.00 0.00 2.40
4977 5107 1.333619 GTTTTGCGCAGGTTCTCAGAA 59.666 47.619 11.31 0.00 0.00 3.02
4978 5108 0.944386 GTTTTGCGCAGGTTCTCAGA 59.056 50.000 11.31 0.00 0.00 3.27
4979 5109 0.662619 TGTTTTGCGCAGGTTCTCAG 59.337 50.000 11.31 0.00 0.00 3.35
4980 5110 1.098869 TTGTTTTGCGCAGGTTCTCA 58.901 45.000 11.31 2.98 0.00 3.27
4981 5111 2.202295 TTTGTTTTGCGCAGGTTCTC 57.798 45.000 11.31 0.18 0.00 2.87
4982 5112 2.159114 ACATTTGTTTTGCGCAGGTTCT 60.159 40.909 11.31 0.00 0.00 3.01
4983 5113 2.200899 ACATTTGTTTTGCGCAGGTTC 58.799 42.857 11.31 3.56 0.00 3.62
4984 5114 2.307934 ACATTTGTTTTGCGCAGGTT 57.692 40.000 11.31 0.00 0.00 3.50
4985 5115 1.932511 CAACATTTGTTTTGCGCAGGT 59.067 42.857 11.31 0.00 35.83 4.00
4986 5116 1.261089 CCAACATTTGTTTTGCGCAGG 59.739 47.619 11.31 0.00 35.83 4.85
4987 5117 2.200067 TCCAACATTTGTTTTGCGCAG 58.800 42.857 11.31 0.00 35.83 5.18
4988 5118 2.299993 TCCAACATTTGTTTTGCGCA 57.700 40.000 5.66 5.66 35.83 6.09
4989 5119 3.876242 ATTCCAACATTTGTTTTGCGC 57.124 38.095 0.00 0.00 35.83 6.09
4990 5120 7.673776 GCCTAATATTCCAACATTTGTTTTGCG 60.674 37.037 0.00 0.00 35.83 4.85
4991 5121 7.118971 TGCCTAATATTCCAACATTTGTTTTGC 59.881 33.333 0.00 0.00 35.83 3.68
4992 5122 8.545229 TGCCTAATATTCCAACATTTGTTTTG 57.455 30.769 0.00 0.00 35.83 2.44
4993 5123 9.218440 CTTGCCTAATATTCCAACATTTGTTTT 57.782 29.630 0.00 0.00 35.83 2.43
4994 5124 8.374743 ACTTGCCTAATATTCCAACATTTGTTT 58.625 29.630 0.00 0.00 35.83 2.83
4995 5125 7.906327 ACTTGCCTAATATTCCAACATTTGTT 58.094 30.769 0.00 0.00 39.12 2.83
4996 5126 7.480760 ACTTGCCTAATATTCCAACATTTGT 57.519 32.000 0.00 0.00 0.00 2.83
4997 5127 8.776376 AAACTTGCCTAATATTCCAACATTTG 57.224 30.769 0.00 0.00 0.00 2.32
5000 5130 9.420118 TCATAAACTTGCCTAATATTCCAACAT 57.580 29.630 0.00 0.00 0.00 2.71
5001 5131 8.815565 TCATAAACTTGCCTAATATTCCAACA 57.184 30.769 0.00 0.00 0.00 3.33
5011 5141 9.474313 ACTGGAATTAATCATAAACTTGCCTAA 57.526 29.630 0.00 0.00 0.00 2.69
5013 5143 7.961326 ACTGGAATTAATCATAAACTTGCCT 57.039 32.000 0.00 0.00 0.00 4.75
5042 5172 9.360901 TGCTAGTATCTCTTCTAGTCATGAATT 57.639 33.333 0.00 0.00 36.84 2.17
5043 5173 8.932434 TGCTAGTATCTCTTCTAGTCATGAAT 57.068 34.615 0.00 0.00 36.84 2.57
5044 5174 8.791675 CATGCTAGTATCTCTTCTAGTCATGAA 58.208 37.037 19.20 0.00 42.55 2.57
5045 5175 7.094420 GCATGCTAGTATCTCTTCTAGTCATGA 60.094 40.741 23.39 0.00 42.55 3.07
5046 5176 7.028962 GCATGCTAGTATCTCTTCTAGTCATG 58.971 42.308 11.37 19.40 42.65 3.07
5047 5177 6.718912 TGCATGCTAGTATCTCTTCTAGTCAT 59.281 38.462 20.33 0.00 36.84 3.06
5048 5178 6.064717 TGCATGCTAGTATCTCTTCTAGTCA 58.935 40.000 20.33 0.00 36.84 3.41
5049 5179 6.567687 TGCATGCTAGTATCTCTTCTAGTC 57.432 41.667 20.33 0.00 36.84 2.59
5050 5180 6.968263 TTGCATGCTAGTATCTCTTCTAGT 57.032 37.500 20.33 0.00 36.84 2.57
5053 5183 8.814931 AGATTATTGCATGCTAGTATCTCTTCT 58.185 33.333 20.33 5.38 0.00 2.85
5062 5192 8.915057 AGTTTGATAGATTATTGCATGCTAGT 57.085 30.769 20.33 7.25 0.00 2.57
5065 5195 9.565090 TTCTAGTTTGATAGATTATTGCATGCT 57.435 29.630 20.33 1.26 31.96 3.79
5066 5196 9.823098 CTTCTAGTTTGATAGATTATTGCATGC 57.177 33.333 11.82 11.82 31.96 4.06
5075 5205 9.160496 CTTGCTGTTCTTCTAGTTTGATAGATT 57.840 33.333 0.00 0.00 31.96 2.40
5076 5206 8.535335 TCTTGCTGTTCTTCTAGTTTGATAGAT 58.465 33.333 0.00 0.00 31.96 1.98
5077 5207 7.815068 GTCTTGCTGTTCTTCTAGTTTGATAGA 59.185 37.037 0.00 0.00 0.00 1.98
5078 5208 7.600375 TGTCTTGCTGTTCTTCTAGTTTGATAG 59.400 37.037 0.00 0.00 0.00 2.08
5079 5209 7.441836 TGTCTTGCTGTTCTTCTAGTTTGATA 58.558 34.615 0.00 0.00 0.00 2.15
5080 5210 6.291377 TGTCTTGCTGTTCTTCTAGTTTGAT 58.709 36.000 0.00 0.00 0.00 2.57
5081 5211 5.670485 TGTCTTGCTGTTCTTCTAGTTTGA 58.330 37.500 0.00 0.00 0.00 2.69
5082 5212 5.991328 TGTCTTGCTGTTCTTCTAGTTTG 57.009 39.130 0.00 0.00 0.00 2.93
5083 5213 6.551385 CATGTCTTGCTGTTCTTCTAGTTT 57.449 37.500 0.00 0.00 0.00 2.66
5098 5228 2.162809 TGCTGCTGTTATGCATGTCTTG 59.837 45.455 10.16 0.00 42.48 3.02
5099 5229 2.439409 TGCTGCTGTTATGCATGTCTT 58.561 42.857 10.16 0.00 42.48 3.01
5100 5230 2.118313 TGCTGCTGTTATGCATGTCT 57.882 45.000 10.16 0.00 42.48 3.41
5101 5231 2.919229 GTTTGCTGCTGTTATGCATGTC 59.081 45.455 10.16 2.63 42.48 3.06
5102 5232 2.296752 TGTTTGCTGCTGTTATGCATGT 59.703 40.909 10.16 0.00 42.48 3.21
5103 5233 2.664568 GTGTTTGCTGCTGTTATGCATG 59.335 45.455 10.16 0.00 42.48 4.06
5104 5234 2.669113 CGTGTTTGCTGCTGTTATGCAT 60.669 45.455 3.79 3.79 42.48 3.96
5105 5235 1.334870 CGTGTTTGCTGCTGTTATGCA 60.335 47.619 0.00 0.00 41.05 3.96
5106 5236 1.330306 CGTGTTTGCTGCTGTTATGC 58.670 50.000 0.00 0.00 0.00 3.14
5107 5237 2.686558 ACGTGTTTGCTGCTGTTATG 57.313 45.000 0.00 0.00 0.00 1.90
5108 5238 3.562141 TGTTACGTGTTTGCTGCTGTTAT 59.438 39.130 0.00 0.00 0.00 1.89
5109 5239 2.937149 TGTTACGTGTTTGCTGCTGTTA 59.063 40.909 0.00 0.00 0.00 2.41
5110 5240 1.740585 TGTTACGTGTTTGCTGCTGTT 59.259 42.857 0.00 0.00 0.00 3.16
5111 5241 1.374560 TGTTACGTGTTTGCTGCTGT 58.625 45.000 0.00 0.00 0.00 4.40
5112 5242 2.466870 TTGTTACGTGTTTGCTGCTG 57.533 45.000 0.00 0.00 0.00 4.41
5113 5243 3.364964 GCTATTGTTACGTGTTTGCTGCT 60.365 43.478 0.00 0.00 0.00 4.24
5114 5244 2.908626 GCTATTGTTACGTGTTTGCTGC 59.091 45.455 0.00 0.00 0.00 5.25
5115 5245 4.151070 CAGCTATTGTTACGTGTTTGCTG 58.849 43.478 0.00 5.38 39.16 4.41
5116 5246 3.813166 ACAGCTATTGTTACGTGTTTGCT 59.187 39.130 0.00 0.00 36.31 3.91
5117 5247 4.141855 ACAGCTATTGTTACGTGTTTGC 57.858 40.909 0.00 0.00 36.31 3.68
5118 5248 6.699895 TCTACAGCTATTGTTACGTGTTTG 57.300 37.500 0.00 0.00 41.29 2.93
5119 5249 7.225145 TGTTTCTACAGCTATTGTTACGTGTTT 59.775 33.333 0.00 0.00 41.29 2.83
5120 5250 6.702723 TGTTTCTACAGCTATTGTTACGTGTT 59.297 34.615 0.00 0.00 41.29 3.32
5121 5251 6.218019 TGTTTCTACAGCTATTGTTACGTGT 58.782 36.000 0.00 0.00 41.29 4.49
5122 5252 6.699895 TGTTTCTACAGCTATTGTTACGTG 57.300 37.500 0.00 0.00 41.29 4.49
5123 5253 6.946229 CTGTTTCTACAGCTATTGTTACGT 57.054 37.500 0.00 0.00 44.81 3.57
5136 5266 5.304357 TCCTCTGTTCATGTCTGTTTCTACA 59.696 40.000 0.00 0.00 0.00 2.74
5137 5267 5.784177 TCCTCTGTTCATGTCTGTTTCTAC 58.216 41.667 0.00 0.00 0.00 2.59
5138 5268 6.014242 ACATCCTCTGTTCATGTCTGTTTCTA 60.014 38.462 0.00 0.00 32.90 2.10
5139 5269 4.963318 TCCTCTGTTCATGTCTGTTTCT 57.037 40.909 0.00 0.00 0.00 2.52
5140 5270 4.999950 ACATCCTCTGTTCATGTCTGTTTC 59.000 41.667 0.00 0.00 32.90 2.78
5141 5271 4.978099 ACATCCTCTGTTCATGTCTGTTT 58.022 39.130 0.00 0.00 32.90 2.83
5142 5272 4.630644 ACATCCTCTGTTCATGTCTGTT 57.369 40.909 0.00 0.00 32.90 3.16
5143 5273 4.321718 CAACATCCTCTGTTCATGTCTGT 58.678 43.478 0.00 0.00 44.99 3.41
5144 5274 3.688185 CCAACATCCTCTGTTCATGTCTG 59.312 47.826 0.00 0.00 44.99 3.51
5145 5275 3.584406 TCCAACATCCTCTGTTCATGTCT 59.416 43.478 0.00 0.00 44.99 3.41
5146 5276 3.686726 GTCCAACATCCTCTGTTCATGTC 59.313 47.826 0.00 0.00 44.99 3.06
5147 5277 3.679389 GTCCAACATCCTCTGTTCATGT 58.321 45.455 0.00 0.00 44.99 3.21
5148 5278 2.674852 CGTCCAACATCCTCTGTTCATG 59.325 50.000 0.00 0.00 44.99 3.07
5149 5279 2.303022 ACGTCCAACATCCTCTGTTCAT 59.697 45.455 0.00 0.00 44.99 2.57
5150 5280 1.691976 ACGTCCAACATCCTCTGTTCA 59.308 47.619 0.00 0.00 44.99 3.18
5151 5281 2.457366 ACGTCCAACATCCTCTGTTC 57.543 50.000 0.00 0.00 44.99 3.18
5153 5283 2.231478 CAGTACGTCCAACATCCTCTGT 59.769 50.000 0.00 0.00 40.84 3.41
5154 5284 2.881074 CAGTACGTCCAACATCCTCTG 58.119 52.381 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.