Multiple sequence alignment - TraesCS3D01G192400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G192400 | chr3D | 100.000 | 4073 | 0 | 0 | 1 | 4073 | 182353299 | 182349227 | 0.000000e+00 | 7522.0 |
1 | TraesCS3D01G192400 | chr3D | 96.291 | 647 | 16 | 3 | 3430 | 4072 | 264603030 | 264603672 | 0.000000e+00 | 1055.0 |
2 | TraesCS3D01G192400 | chr3D | 97.078 | 616 | 14 | 3 | 1 | 614 | 559084995 | 559085608 | 0.000000e+00 | 1035.0 |
3 | TraesCS3D01G192400 | chr3D | 97.078 | 616 | 15 | 2 | 1 | 614 | 559090447 | 559091061 | 0.000000e+00 | 1035.0 |
4 | TraesCS3D01G192400 | chr3D | 89.493 | 276 | 22 | 4 | 741 | 1009 | 138215530 | 138215805 | 3.900000e-90 | 342.0 |
5 | TraesCS3D01G192400 | chr3A | 95.747 | 1787 | 49 | 8 | 1055 | 2824 | 231039835 | 231041611 | 0.000000e+00 | 2854.0 |
6 | TraesCS3D01G192400 | chr3A | 79.249 | 559 | 71 | 26 | 2865 | 3416 | 231041619 | 231042139 | 8.380000e-92 | 348.0 |
7 | TraesCS3D01G192400 | chr3A | 90.000 | 130 | 10 | 3 | 613 | 741 | 231039650 | 231039777 | 9.060000e-37 | 165.0 |
8 | TraesCS3D01G192400 | chr3A | 100.000 | 30 | 0 | 0 | 1023 | 1052 | 231039790 | 231039819 | 5.690000e-04 | 56.5 |
9 | TraesCS3D01G192400 | chr3B | 93.466 | 1913 | 75 | 24 | 1312 | 3204 | 260850053 | 260848171 | 0.000000e+00 | 2795.0 |
10 | TraesCS3D01G192400 | chr3B | 91.411 | 652 | 45 | 5 | 3430 | 4072 | 804874644 | 804873995 | 0.000000e+00 | 883.0 |
11 | TraesCS3D01G192400 | chr3B | 87.402 | 635 | 72 | 7 | 3442 | 4072 | 809364344 | 809364974 | 0.000000e+00 | 723.0 |
12 | TraesCS3D01G192400 | chr3B | 92.208 | 154 | 9 | 3 | 3257 | 3410 | 260848027 | 260847877 | 8.870000e-52 | 215.0 |
13 | TraesCS3D01G192400 | chrUn | 97.667 | 643 | 15 | 0 | 3430 | 4072 | 101636572 | 101637214 | 0.000000e+00 | 1105.0 |
14 | TraesCS3D01G192400 | chrUn | 97.087 | 618 | 14 | 2 | 1 | 614 | 162246804 | 162247421 | 0.000000e+00 | 1038.0 |
15 | TraesCS3D01G192400 | chr2A | 97.735 | 618 | 10 | 2 | 1 | 614 | 78756934 | 78757551 | 0.000000e+00 | 1061.0 |
16 | TraesCS3D01G192400 | chr2A | 90.000 | 280 | 21 | 4 | 732 | 1008 | 742051755 | 742051480 | 5.010000e-94 | 355.0 |
17 | TraesCS3D01G192400 | chr2A | 90.000 | 280 | 21 | 4 | 732 | 1008 | 742083623 | 742083348 | 5.010000e-94 | 355.0 |
18 | TraesCS3D01G192400 | chr2A | 89.568 | 278 | 22 | 6 | 740 | 1010 | 470535661 | 470535938 | 3.010000e-91 | 346.0 |
19 | TraesCS3D01G192400 | chr7D | 97.390 | 613 | 13 | 2 | 1 | 613 | 467679315 | 467679924 | 0.000000e+00 | 1040.0 |
20 | TraesCS3D01G192400 | chr7D | 89.493 | 276 | 23 | 4 | 740 | 1009 | 276255181 | 276254906 | 1.080000e-90 | 344.0 |
21 | TraesCS3D01G192400 | chr7D | 97.436 | 117 | 2 | 1 | 1233 | 1348 | 105206919 | 105206803 | 8.930000e-47 | 198.0 |
22 | TraesCS3D01G192400 | chr4A | 97.101 | 621 | 11 | 3 | 1 | 615 | 744034582 | 744035201 | 0.000000e+00 | 1040.0 |
23 | TraesCS3D01G192400 | chr4A | 86.862 | 647 | 74 | 10 | 3429 | 4070 | 703942269 | 703942909 | 0.000000e+00 | 713.0 |
24 | TraesCS3D01G192400 | chr1D | 97.398 | 615 | 9 | 4 | 1 | 614 | 315635764 | 315635156 | 0.000000e+00 | 1040.0 |
25 | TraesCS3D01G192400 | chr1D | 97.083 | 617 | 14 | 3 | 1 | 614 | 50033459 | 50034074 | 0.000000e+00 | 1037.0 |
26 | TraesCS3D01G192400 | chr1D | 90.580 | 276 | 19 | 4 | 739 | 1007 | 414927995 | 414928270 | 3.870000e-95 | 359.0 |
27 | TraesCS3D01G192400 | chr2D | 97.231 | 614 | 14 | 2 | 1 | 614 | 382433134 | 382433744 | 0.000000e+00 | 1037.0 |
28 | TraesCS3D01G192400 | chr2D | 87.958 | 191 | 15 | 7 | 1233 | 1417 | 85756407 | 85756219 | 6.850000e-53 | 219.0 |
29 | TraesCS3D01G192400 | chr2D | 87.838 | 148 | 3 | 4 | 1597 | 1744 | 85756288 | 85756156 | 4.210000e-35 | 159.0 |
30 | TraesCS3D01G192400 | chr2D | 94.828 | 58 | 3 | 0 | 1898 | 1955 | 85755800 | 85755743 | 1.560000e-14 | 91.6 |
31 | TraesCS3D01G192400 | chr7B | 86.929 | 635 | 74 | 8 | 3442 | 4072 | 642467833 | 642468462 | 0.000000e+00 | 704.0 |
32 | TraesCS3D01G192400 | chr7B | 86.614 | 635 | 76 | 8 | 3442 | 4072 | 642463075 | 642463704 | 0.000000e+00 | 693.0 |
33 | TraesCS3D01G192400 | chr7B | 82.704 | 636 | 100 | 7 | 3438 | 4069 | 611913951 | 611914580 | 1.280000e-154 | 556.0 |
34 | TraesCS3D01G192400 | chr7B | 89.531 | 277 | 23 | 4 | 739 | 1009 | 272320918 | 272321194 | 3.010000e-91 | 346.0 |
35 | TraesCS3D01G192400 | chr7B | 94.017 | 117 | 6 | 1 | 1233 | 1348 | 411385682 | 411385566 | 4.180000e-40 | 176.0 |
36 | TraesCS3D01G192400 | chr5B | 82.629 | 639 | 98 | 9 | 3435 | 4066 | 253136506 | 253137138 | 1.650000e-153 | 553.0 |
37 | TraesCS3D01G192400 | chr5D | 89.928 | 278 | 20 | 7 | 739 | 1009 | 536387250 | 536387526 | 6.480000e-93 | 351.0 |
38 | TraesCS3D01G192400 | chr5D | 88.372 | 172 | 11 | 6 | 861 | 1027 | 105860655 | 105860822 | 8.930000e-47 | 198.0 |
39 | TraesCS3D01G192400 | chr4D | 89.493 | 276 | 23 | 4 | 740 | 1009 | 235278295 | 235278570 | 1.080000e-90 | 344.0 |
40 | TraesCS3D01G192400 | chr6D | 84.871 | 271 | 29 | 7 | 762 | 1024 | 447759995 | 447760261 | 3.120000e-66 | 263.0 |
41 | TraesCS3D01G192400 | chr7A | 95.726 | 117 | 4 | 1 | 1233 | 1348 | 706303706 | 706303822 | 1.930000e-43 | 187.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G192400 | chr3D | 182349227 | 182353299 | 4072 | True | 7522.000 | 7522 | 100.000 | 1 | 4073 | 1 | chr3D.!!$R1 | 4072 |
1 | TraesCS3D01G192400 | chr3D | 264603030 | 264603672 | 642 | False | 1055.000 | 1055 | 96.291 | 3430 | 4072 | 1 | chr3D.!!$F2 | 642 |
2 | TraesCS3D01G192400 | chr3D | 559084995 | 559085608 | 613 | False | 1035.000 | 1035 | 97.078 | 1 | 614 | 1 | chr3D.!!$F3 | 613 |
3 | TraesCS3D01G192400 | chr3D | 559090447 | 559091061 | 614 | False | 1035.000 | 1035 | 97.078 | 1 | 614 | 1 | chr3D.!!$F4 | 613 |
4 | TraesCS3D01G192400 | chr3A | 231039650 | 231042139 | 2489 | False | 855.875 | 2854 | 91.249 | 613 | 3416 | 4 | chr3A.!!$F1 | 2803 |
5 | TraesCS3D01G192400 | chr3B | 260847877 | 260850053 | 2176 | True | 1505.000 | 2795 | 92.837 | 1312 | 3410 | 2 | chr3B.!!$R2 | 2098 |
6 | TraesCS3D01G192400 | chr3B | 804873995 | 804874644 | 649 | True | 883.000 | 883 | 91.411 | 3430 | 4072 | 1 | chr3B.!!$R1 | 642 |
7 | TraesCS3D01G192400 | chr3B | 809364344 | 809364974 | 630 | False | 723.000 | 723 | 87.402 | 3442 | 4072 | 1 | chr3B.!!$F1 | 630 |
8 | TraesCS3D01G192400 | chrUn | 101636572 | 101637214 | 642 | False | 1105.000 | 1105 | 97.667 | 3430 | 4072 | 1 | chrUn.!!$F1 | 642 |
9 | TraesCS3D01G192400 | chrUn | 162246804 | 162247421 | 617 | False | 1038.000 | 1038 | 97.087 | 1 | 614 | 1 | chrUn.!!$F2 | 613 |
10 | TraesCS3D01G192400 | chr2A | 78756934 | 78757551 | 617 | False | 1061.000 | 1061 | 97.735 | 1 | 614 | 1 | chr2A.!!$F1 | 613 |
11 | TraesCS3D01G192400 | chr7D | 467679315 | 467679924 | 609 | False | 1040.000 | 1040 | 97.390 | 1 | 613 | 1 | chr7D.!!$F1 | 612 |
12 | TraesCS3D01G192400 | chr4A | 744034582 | 744035201 | 619 | False | 1040.000 | 1040 | 97.101 | 1 | 615 | 1 | chr4A.!!$F2 | 614 |
13 | TraesCS3D01G192400 | chr4A | 703942269 | 703942909 | 640 | False | 713.000 | 713 | 86.862 | 3429 | 4070 | 1 | chr4A.!!$F1 | 641 |
14 | TraesCS3D01G192400 | chr1D | 315635156 | 315635764 | 608 | True | 1040.000 | 1040 | 97.398 | 1 | 614 | 1 | chr1D.!!$R1 | 613 |
15 | TraesCS3D01G192400 | chr1D | 50033459 | 50034074 | 615 | False | 1037.000 | 1037 | 97.083 | 1 | 614 | 1 | chr1D.!!$F1 | 613 |
16 | TraesCS3D01G192400 | chr2D | 382433134 | 382433744 | 610 | False | 1037.000 | 1037 | 97.231 | 1 | 614 | 1 | chr2D.!!$F1 | 613 |
17 | TraesCS3D01G192400 | chr7B | 642467833 | 642468462 | 629 | False | 704.000 | 704 | 86.929 | 3442 | 4072 | 1 | chr7B.!!$F4 | 630 |
18 | TraesCS3D01G192400 | chr7B | 642463075 | 642463704 | 629 | False | 693.000 | 693 | 86.614 | 3442 | 4072 | 1 | chr7B.!!$F3 | 630 |
19 | TraesCS3D01G192400 | chr7B | 611913951 | 611914580 | 629 | False | 556.000 | 556 | 82.704 | 3438 | 4069 | 1 | chr7B.!!$F2 | 631 |
20 | TraesCS3D01G192400 | chr5B | 253136506 | 253137138 | 632 | False | 553.000 | 553 | 82.629 | 3435 | 4066 | 1 | chr5B.!!$F1 | 631 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
229 | 232 | 0.249699 | TTGTGTCGCGACCACAATCT | 60.250 | 50.000 | 33.29 | 0.0 | 34.39 | 2.40 | F |
1102 | 1142 | 1.336056 | GGAACGTGTGAGAGTGAGTCC | 60.336 | 57.143 | 0.00 | 0.0 | 0.00 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2090 | 2130 | 0.623723 | TTTCTACCATGGCAGGACCC | 59.376 | 55.0 | 13.04 | 0.0 | 37.83 | 4.46 | R |
3083 | 3147 | 0.469494 | TGCTGAACTCCTGAAGTGCA | 59.531 | 50.0 | 0.00 | 0.0 | 41.61 | 4.57 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
229 | 232 | 0.249699 | TTGTGTCGCGACCACAATCT | 60.250 | 50.000 | 33.29 | 0.00 | 34.39 | 2.40 |
347 | 353 | 2.989253 | TGCAAGGAGACGGAGCGA | 60.989 | 61.111 | 0.00 | 0.00 | 0.00 | 4.93 |
451 | 471 | 3.318275 | GTGTGGTTTTCCCTTTCTCTTCC | 59.682 | 47.826 | 0.00 | 0.00 | 39.73 | 3.46 |
516 | 536 | 7.264294 | AGAGGTCCAACTCTTCTTCATATTT | 57.736 | 36.000 | 0.00 | 0.00 | 45.21 | 1.40 |
627 | 647 | 4.337985 | TCTAACAACAAAACGCGTGAAA | 57.662 | 36.364 | 14.98 | 0.00 | 0.00 | 2.69 |
655 | 675 | 3.455327 | GGATAGCCAAACCTACGAGTTC | 58.545 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
695 | 715 | 8.714179 | CGGCTCGATTAATGTGGTTATTATTAA | 58.286 | 33.333 | 0.00 | 0.00 | 32.66 | 1.40 |
741 | 762 | 7.210174 | GGAGTTTTCCTTGCTAAATCAAACTT | 58.790 | 34.615 | 0.00 | 0.00 | 40.58 | 2.66 |
742 | 763 | 8.357402 | GGAGTTTTCCTTGCTAAATCAAACTTA | 58.643 | 33.333 | 0.00 | 0.00 | 40.58 | 2.24 |
743 | 764 | 9.399403 | GAGTTTTCCTTGCTAAATCAAACTTAG | 57.601 | 33.333 | 0.00 | 0.00 | 34.06 | 2.18 |
744 | 765 | 9.131791 | AGTTTTCCTTGCTAAATCAAACTTAGA | 57.868 | 29.630 | 0.00 | 0.00 | 30.61 | 2.10 |
745 | 766 | 9.181805 | GTTTTCCTTGCTAAATCAAACTTAGAC | 57.818 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
746 | 767 | 8.691661 | TTTCCTTGCTAAATCAAACTTAGACT | 57.308 | 30.769 | 0.00 | 0.00 | 0.00 | 3.24 |
747 | 768 | 9.787435 | TTTCCTTGCTAAATCAAACTTAGACTA | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
748 | 769 | 8.773404 | TCCTTGCTAAATCAAACTTAGACTAC | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
749 | 770 | 7.822822 | TCCTTGCTAAATCAAACTTAGACTACC | 59.177 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
750 | 771 | 7.065923 | CCTTGCTAAATCAAACTTAGACTACCC | 59.934 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
751 | 772 | 7.011499 | TGCTAAATCAAACTTAGACTACCCA | 57.989 | 36.000 | 0.00 | 0.00 | 0.00 | 4.51 |
753 | 774 | 6.877322 | GCTAAATCAAACTTAGACTACCCACA | 59.123 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
754 | 775 | 7.389607 | GCTAAATCAAACTTAGACTACCCACAA | 59.610 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
755 | 776 | 9.449719 | CTAAATCAAACTTAGACTACCCACAAT | 57.550 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
757 | 778 | 9.802039 | AAATCAAACTTAGACTACCCACAATAA | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
758 | 779 | 9.802039 | AATCAAACTTAGACTACCCACAATAAA | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
759 | 780 | 9.802039 | ATCAAACTTAGACTACCCACAATAAAA | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
760 | 781 | 9.280174 | TCAAACTTAGACTACCCACAATAAAAG | 57.720 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
761 | 782 | 9.063615 | CAAACTTAGACTACCCACAATAAAAGT | 57.936 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
815 | 836 | 8.969260 | AGATAAAATAGATGATGTGTCAAGCA | 57.031 | 30.769 | 0.00 | 0.00 | 38.01 | 3.91 |
816 | 837 | 9.399797 | AGATAAAATAGATGATGTGTCAAGCAA | 57.600 | 29.630 | 0.00 | 0.00 | 38.01 | 3.91 |
822 | 843 | 9.961265 | AATAGATGATGTGTCAAGCAATAAATG | 57.039 | 29.630 | 0.00 | 0.00 | 38.01 | 2.32 |
823 | 844 | 7.634671 | AGATGATGTGTCAAGCAATAAATGA | 57.365 | 32.000 | 0.00 | 0.00 | 38.01 | 2.57 |
824 | 845 | 8.058667 | AGATGATGTGTCAAGCAATAAATGAA | 57.941 | 30.769 | 0.00 | 0.00 | 38.01 | 2.57 |
825 | 846 | 8.525316 | AGATGATGTGTCAAGCAATAAATGAAA | 58.475 | 29.630 | 0.00 | 0.00 | 38.01 | 2.69 |
826 | 847 | 9.142515 | GATGATGTGTCAAGCAATAAATGAAAA | 57.857 | 29.630 | 0.00 | 0.00 | 38.01 | 2.29 |
827 | 848 | 8.883954 | TGATGTGTCAAGCAATAAATGAAAAA | 57.116 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
849 | 870 | 6.382869 | AAAAGAGGCATGTGATAACATAGC | 57.617 | 37.500 | 0.00 | 2.54 | 0.00 | 2.97 |
850 | 871 | 4.970860 | AGAGGCATGTGATAACATAGCT | 57.029 | 40.909 | 13.85 | 0.00 | 0.00 | 3.32 |
851 | 872 | 6.425210 | AAGAGGCATGTGATAACATAGCTA | 57.575 | 37.500 | 13.85 | 0.00 | 0.00 | 3.32 |
852 | 873 | 6.035368 | AGAGGCATGTGATAACATAGCTAG | 57.965 | 41.667 | 13.85 | 0.00 | 0.00 | 3.42 |
853 | 874 | 5.541868 | AGAGGCATGTGATAACATAGCTAGT | 59.458 | 40.000 | 13.85 | 0.00 | 0.00 | 2.57 |
854 | 875 | 6.042552 | AGAGGCATGTGATAACATAGCTAGTT | 59.957 | 38.462 | 13.85 | 6.69 | 0.00 | 2.24 |
855 | 876 | 7.233553 | AGAGGCATGTGATAACATAGCTAGTTA | 59.766 | 37.037 | 14.23 | 14.23 | 36.06 | 2.24 |
856 | 877 | 7.155328 | AGGCATGTGATAACATAGCTAGTTAC | 58.845 | 38.462 | 14.19 | 8.29 | 34.59 | 2.50 |
857 | 878 | 7.015682 | AGGCATGTGATAACATAGCTAGTTACT | 59.984 | 37.037 | 14.19 | 0.00 | 34.59 | 2.24 |
858 | 879 | 8.304596 | GGCATGTGATAACATAGCTAGTTACTA | 58.695 | 37.037 | 14.19 | 0.00 | 34.59 | 1.82 |
859 | 880 | 9.862371 | GCATGTGATAACATAGCTAGTTACTAT | 57.138 | 33.333 | 14.19 | 4.65 | 34.59 | 2.12 |
887 | 908 | 9.755804 | AGTATGAGTAACATCACACATATCAAG | 57.244 | 33.333 | 0.00 | 0.00 | 40.07 | 3.02 |
888 | 909 | 8.982685 | GTATGAGTAACATCACACATATCAAGG | 58.017 | 37.037 | 0.00 | 0.00 | 40.07 | 3.61 |
889 | 910 | 5.817296 | TGAGTAACATCACACATATCAAGGC | 59.183 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
890 | 911 | 5.744171 | AGTAACATCACACATATCAAGGCA | 58.256 | 37.500 | 0.00 | 0.00 | 0.00 | 4.75 |
891 | 912 | 6.179756 | AGTAACATCACACATATCAAGGCAA | 58.820 | 36.000 | 0.00 | 0.00 | 0.00 | 4.52 |
892 | 913 | 5.571784 | AACATCACACATATCAAGGCAAG | 57.428 | 39.130 | 0.00 | 0.00 | 0.00 | 4.01 |
893 | 914 | 4.847198 | ACATCACACATATCAAGGCAAGA | 58.153 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
894 | 915 | 5.443283 | ACATCACACATATCAAGGCAAGAT | 58.557 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
895 | 916 | 5.298527 | ACATCACACATATCAAGGCAAGATG | 59.701 | 40.000 | 0.00 | 0.00 | 36.24 | 2.90 |
896 | 917 | 5.101648 | TCACACATATCAAGGCAAGATGA | 57.898 | 39.130 | 2.43 | 0.00 | 0.00 | 2.92 |
897 | 918 | 5.499313 | TCACACATATCAAGGCAAGATGAA | 58.501 | 37.500 | 2.43 | 0.00 | 0.00 | 2.57 |
898 | 919 | 6.124340 | TCACACATATCAAGGCAAGATGAAT | 58.876 | 36.000 | 2.43 | 0.00 | 0.00 | 2.57 |
899 | 920 | 6.261603 | TCACACATATCAAGGCAAGATGAATC | 59.738 | 38.462 | 2.43 | 0.00 | 0.00 | 2.52 |
900 | 921 | 6.262496 | CACACATATCAAGGCAAGATGAATCT | 59.738 | 38.462 | 2.43 | 0.00 | 39.22 | 2.40 |
901 | 922 | 7.443272 | CACACATATCAAGGCAAGATGAATCTA | 59.557 | 37.037 | 2.43 | 0.00 | 35.76 | 1.98 |
902 | 923 | 8.162085 | ACACATATCAAGGCAAGATGAATCTAT | 58.838 | 33.333 | 2.43 | 0.00 | 35.76 | 1.98 |
903 | 924 | 9.662947 | CACATATCAAGGCAAGATGAATCTATA | 57.337 | 33.333 | 2.43 | 0.00 | 35.76 | 1.31 |
904 | 925 | 9.887629 | ACATATCAAGGCAAGATGAATCTATAG | 57.112 | 33.333 | 0.00 | 0.00 | 35.76 | 1.31 |
905 | 926 | 9.887629 | CATATCAAGGCAAGATGAATCTATAGT | 57.112 | 33.333 | 0.00 | 0.00 | 35.76 | 2.12 |
907 | 928 | 7.609097 | TCAAGGCAAGATGAATCTATAGTCT | 57.391 | 36.000 | 0.00 | 0.00 | 35.76 | 3.24 |
908 | 929 | 8.712228 | TCAAGGCAAGATGAATCTATAGTCTA | 57.288 | 34.615 | 0.00 | 0.00 | 35.76 | 2.59 |
909 | 930 | 9.147732 | TCAAGGCAAGATGAATCTATAGTCTAA | 57.852 | 33.333 | 0.00 | 0.00 | 35.76 | 2.10 |
910 | 931 | 9.941325 | CAAGGCAAGATGAATCTATAGTCTAAT | 57.059 | 33.333 | 0.00 | 0.00 | 35.76 | 1.73 |
928 | 949 | 8.340618 | AGTCTAATAAATGAAGTGTTGCATGT | 57.659 | 30.769 | 0.00 | 0.00 | 0.00 | 3.21 |
929 | 950 | 8.796475 | AGTCTAATAAATGAAGTGTTGCATGTT | 58.204 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
932 | 953 | 9.289303 | CTAATAAATGAAGTGTTGCATGTTACC | 57.711 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
933 | 954 | 5.528043 | AAATGAAGTGTTGCATGTTACCA | 57.472 | 34.783 | 0.00 | 0.00 | 0.00 | 3.25 |
934 | 955 | 3.980646 | TGAAGTGTTGCATGTTACCAC | 57.019 | 42.857 | 0.00 | 0.00 | 0.00 | 4.16 |
935 | 956 | 3.282885 | TGAAGTGTTGCATGTTACCACA | 58.717 | 40.909 | 0.00 | 0.00 | 37.31 | 4.17 |
936 | 957 | 3.066064 | TGAAGTGTTGCATGTTACCACAC | 59.934 | 43.478 | 7.36 | 7.36 | 35.03 | 3.82 |
937 | 958 | 2.649190 | AGTGTTGCATGTTACCACACA | 58.351 | 42.857 | 15.74 | 0.00 | 35.03 | 3.72 |
938 | 959 | 3.221771 | AGTGTTGCATGTTACCACACAT | 58.778 | 40.909 | 15.74 | 1.51 | 37.93 | 3.21 |
939 | 960 | 4.393834 | AGTGTTGCATGTTACCACACATA | 58.606 | 39.130 | 15.74 | 0.00 | 35.51 | 2.29 |
940 | 961 | 5.009631 | AGTGTTGCATGTTACCACACATAT | 58.990 | 37.500 | 15.74 | 0.00 | 35.51 | 1.78 |
941 | 962 | 6.176896 | AGTGTTGCATGTTACCACACATATA | 58.823 | 36.000 | 15.74 | 0.00 | 35.51 | 0.86 |
942 | 963 | 6.828273 | AGTGTTGCATGTTACCACACATATAT | 59.172 | 34.615 | 15.74 | 0.00 | 35.51 | 0.86 |
943 | 964 | 7.339212 | AGTGTTGCATGTTACCACACATATATT | 59.661 | 33.333 | 15.74 | 0.00 | 35.51 | 1.28 |
944 | 965 | 8.616942 | GTGTTGCATGTTACCACACATATATTA | 58.383 | 33.333 | 10.02 | 0.00 | 35.51 | 0.98 |
945 | 966 | 8.616942 | TGTTGCATGTTACCACACATATATTAC | 58.383 | 33.333 | 0.00 | 0.00 | 35.51 | 1.89 |
946 | 967 | 8.836413 | GTTGCATGTTACCACACATATATTACT | 58.164 | 33.333 | 0.00 | 0.00 | 35.51 | 2.24 |
947 | 968 | 8.601845 | TGCATGTTACCACACATATATTACTC | 57.398 | 34.615 | 0.00 | 0.00 | 35.51 | 2.59 |
948 | 969 | 7.659799 | TGCATGTTACCACACATATATTACTCC | 59.340 | 37.037 | 0.00 | 0.00 | 35.51 | 3.85 |
949 | 970 | 7.119262 | GCATGTTACCACACATATATTACTCCC | 59.881 | 40.741 | 0.00 | 0.00 | 35.51 | 4.30 |
950 | 971 | 7.069877 | TGTTACCACACATATATTACTCCCC | 57.930 | 40.000 | 0.00 | 0.00 | 0.00 | 4.81 |
951 | 972 | 6.616137 | TGTTACCACACATATATTACTCCCCA | 59.384 | 38.462 | 0.00 | 0.00 | 0.00 | 4.96 |
952 | 973 | 5.562298 | ACCACACATATATTACTCCCCAC | 57.438 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
953 | 974 | 5.224441 | ACCACACATATATTACTCCCCACT | 58.776 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
954 | 975 | 6.387127 | ACCACACATATATTACTCCCCACTA | 58.613 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
955 | 976 | 7.023120 | ACCACACATATATTACTCCCCACTAT | 58.977 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
956 | 977 | 8.181524 | ACCACACATATATTACTCCCCACTATA | 58.818 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
957 | 978 | 8.696374 | CCACACATATATTACTCCCCACTATAG | 58.304 | 40.741 | 0.00 | 0.00 | 0.00 | 1.31 |
958 | 979 | 9.475620 | CACACATATATTACTCCCCACTATAGA | 57.524 | 37.037 | 6.78 | 0.00 | 0.00 | 1.98 |
959 | 980 | 9.702253 | ACACATATATTACTCCCCACTATAGAG | 57.298 | 37.037 | 6.78 | 0.00 | 0.00 | 2.43 |
960 | 981 | 9.137459 | CACATATATTACTCCCCACTATAGAGG | 57.863 | 40.741 | 6.78 | 8.10 | 31.70 | 3.69 |
961 | 982 | 8.857997 | ACATATATTACTCCCCACTATAGAGGT | 58.142 | 37.037 | 14.29 | 0.00 | 31.70 | 3.85 |
964 | 985 | 6.800223 | ATTACTCCCCACTATAGAGGTAGT | 57.200 | 41.667 | 18.82 | 18.82 | 35.34 | 2.73 |
965 | 986 | 7.901804 | ATTACTCCCCACTATAGAGGTAGTA | 57.098 | 40.000 | 17.42 | 17.42 | 33.29 | 1.82 |
966 | 987 | 7.712142 | TTACTCCCCACTATAGAGGTAGTAA | 57.288 | 40.000 | 23.15 | 23.15 | 33.91 | 2.24 |
967 | 988 | 5.951204 | ACTCCCCACTATAGAGGTAGTAAC | 58.049 | 45.833 | 14.29 | 0.00 | 33.29 | 2.50 |
968 | 989 | 5.434376 | ACTCCCCACTATAGAGGTAGTAACA | 59.566 | 44.000 | 14.29 | 0.00 | 33.29 | 2.41 |
969 | 990 | 6.104392 | ACTCCCCACTATAGAGGTAGTAACAT | 59.896 | 42.308 | 14.29 | 0.00 | 33.29 | 2.71 |
970 | 991 | 7.296628 | ACTCCCCACTATAGAGGTAGTAACATA | 59.703 | 40.741 | 14.29 | 0.00 | 33.29 | 2.29 |
971 | 992 | 7.696981 | TCCCCACTATAGAGGTAGTAACATAG | 58.303 | 42.308 | 14.29 | 0.00 | 33.29 | 2.23 |
972 | 993 | 7.296628 | TCCCCACTATAGAGGTAGTAACATAGT | 59.703 | 40.741 | 14.29 | 0.00 | 33.29 | 2.12 |
973 | 994 | 8.609483 | CCCCACTATAGAGGTAGTAACATAGTA | 58.391 | 40.741 | 14.29 | 0.00 | 33.29 | 1.82 |
974 | 995 | 9.447157 | CCCACTATAGAGGTAGTAACATAGTAC | 57.553 | 40.741 | 14.29 | 0.00 | 33.29 | 2.73 |
1000 | 1021 | 9.640963 | CTACTCTATGTTATTACCCATTGTAGC | 57.359 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
1001 | 1022 | 8.263854 | ACTCTATGTTATTACCCATTGTAGCT | 57.736 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
1002 | 1023 | 9.375974 | ACTCTATGTTATTACCCATTGTAGCTA | 57.624 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
1003 | 1024 | 9.862371 | CTCTATGTTATTACCCATTGTAGCTAG | 57.138 | 37.037 | 0.00 | 0.00 | 0.00 | 3.42 |
1004 | 1025 | 9.375974 | TCTATGTTATTACCCATTGTAGCTAGT | 57.624 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1005 | 1026 | 9.640963 | CTATGTTATTACCCATTGTAGCTAGTC | 57.359 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1006 | 1027 | 7.670605 | TGTTATTACCCATTGTAGCTAGTCT | 57.329 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1007 | 1028 | 8.086143 | TGTTATTACCCATTGTAGCTAGTCTT | 57.914 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1008 | 1029 | 9.204337 | TGTTATTACCCATTGTAGCTAGTCTTA | 57.796 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
1009 | 1030 | 9.473640 | GTTATTACCCATTGTAGCTAGTCTTAC | 57.526 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
1010 | 1031 | 7.916077 | ATTACCCATTGTAGCTAGTCTTACT | 57.084 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1011 | 1032 | 5.599999 | ACCCATTGTAGCTAGTCTTACTG | 57.400 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
1012 | 1033 | 4.406003 | ACCCATTGTAGCTAGTCTTACTGG | 59.594 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
1018 | 1039 | 2.478547 | GCTAGTCTTACTGGCGAGTC | 57.521 | 55.000 | 4.00 | 0.00 | 42.67 | 3.36 |
1019 | 1040 | 1.743958 | GCTAGTCTTACTGGCGAGTCA | 59.256 | 52.381 | 4.00 | 0.00 | 42.67 | 3.41 |
1020 | 1041 | 2.359531 | GCTAGTCTTACTGGCGAGTCAT | 59.640 | 50.000 | 4.00 | 0.00 | 42.67 | 3.06 |
1021 | 1042 | 3.181485 | GCTAGTCTTACTGGCGAGTCATT | 60.181 | 47.826 | 4.00 | 0.00 | 42.67 | 2.57 |
1052 | 1073 | 6.777091 | CCATTTGGGAAGTCCATATTGACATA | 59.223 | 38.462 | 9.43 | 0.00 | 46.52 | 2.29 |
1070 | 1104 | 7.446001 | TGACATACTATTGAACATTGCACAA | 57.554 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1078 | 1118 | 7.981225 | ACTATTGAACATTGCACAAGAGTTTTT | 59.019 | 29.630 | 13.85 | 0.00 | 41.21 | 1.94 |
1088 | 1128 | 3.377172 | CACAAGAGTTTTTCAGGGAACGT | 59.623 | 43.478 | 0.00 | 0.00 | 0.00 | 3.99 |
1102 | 1142 | 1.336056 | GGAACGTGTGAGAGTGAGTCC | 60.336 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
1136 | 1176 | 2.983592 | CACCACCAAACCCTCCGC | 60.984 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1137 | 1177 | 4.280019 | ACCACCAAACCCTCCGCC | 62.280 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1139 | 1179 | 4.636435 | CACCAAACCCTCCGCCGT | 62.636 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
1141 | 1181 | 2.435410 | CCAAACCCTCCGCCGTAC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
1142 | 1182 | 2.435410 | CAAACCCTCCGCCGTACC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 3.34 |
1143 | 1183 | 3.709633 | AAACCCTCCGCCGTACCC | 61.710 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2090 | 2130 | 0.178767 | TGGGTCAGCAGGATGATTCG | 59.821 | 55.000 | 0.00 | 0.00 | 39.69 | 3.34 |
2240 | 2280 | 2.868044 | GCAGCGTCAGGAAGAAGAAGAA | 60.868 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2261 | 2301 | 0.607217 | CAGCTCCATTGGTGTCAGCA | 60.607 | 55.000 | 14.52 | 0.00 | 33.74 | 4.41 |
2279 | 2319 | 1.995626 | AGCATCGGCCAACCCTACT | 60.996 | 57.895 | 2.24 | 0.00 | 42.56 | 2.57 |
2372 | 2412 | 3.747579 | AGGGGCATCAAGCTGGGG | 61.748 | 66.667 | 0.00 | 0.00 | 44.79 | 4.96 |
2438 | 2478 | 3.992427 | CCATGTATGATCTCATGACGGTG | 59.008 | 47.826 | 19.63 | 6.41 | 42.52 | 4.94 |
2487 | 2527 | 1.751927 | CTTGGCTGCACCCTCATCC | 60.752 | 63.158 | 0.50 | 0.00 | 37.83 | 3.51 |
2657 | 2697 | 5.122554 | TGTTCTGTTGTCGTTGTTACATGTT | 59.877 | 36.000 | 2.30 | 0.00 | 0.00 | 2.71 |
2699 | 2739 | 3.520721 | TGAGAACATCATGTGGGAGTGAT | 59.479 | 43.478 | 0.00 | 0.00 | 35.54 | 3.06 |
2732 | 2772 | 5.047306 | TGTTGGTCACATCTTGTAGGTAGAG | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2813 | 2868 | 3.706594 | TGGGATCAACTAGTCCATGTCTC | 59.293 | 47.826 | 0.00 | 0.00 | 36.19 | 3.36 |
2847 | 2902 | 4.996758 | TCTATCAACATGGCATGGTATTCG | 59.003 | 41.667 | 29.49 | 12.89 | 33.60 | 3.34 |
2850 | 2905 | 3.118445 | TCAACATGGCATGGTATTCGAGA | 60.118 | 43.478 | 29.49 | 13.95 | 33.60 | 4.04 |
2881 | 2936 | 8.949953 | CACATTTGCATTTCAGTTTCATTTTTC | 58.050 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
2954 | 3009 | 8.798859 | AGTGATAAAGTAAAGTGATCATGCTT | 57.201 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
2955 | 3010 | 9.236006 | AGTGATAAAGTAAAGTGATCATGCTTT | 57.764 | 29.630 | 13.88 | 13.88 | 38.35 | 3.51 |
2956 | 3011 | 9.846248 | GTGATAAAGTAAAGTGATCATGCTTTT | 57.154 | 29.630 | 14.44 | 8.84 | 36.47 | 2.27 |
2983 | 3038 | 5.467735 | ACAATCAGCCTGCAATTTTCTTTTC | 59.532 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2984 | 3039 | 4.669206 | TCAGCCTGCAATTTTCTTTTCA | 57.331 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
2988 | 3051 | 4.992951 | AGCCTGCAATTTTCTTTTCATGTC | 59.007 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2990 | 3053 | 5.107220 | GCCTGCAATTTTCTTTTCATGTCTG | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2992 | 3055 | 6.480981 | CCTGCAATTTTCTTTTCATGTCTGTT | 59.519 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2993 | 3056 | 7.652909 | CCTGCAATTTTCTTTTCATGTCTGTTA | 59.347 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2995 | 3058 | 9.545105 | TGCAATTTTCTTTTCATGTCTGTTATT | 57.455 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
3022 | 3085 | 7.768324 | TTTTCTTATATGGTACCCCCTTACA | 57.232 | 36.000 | 10.07 | 0.00 | 0.00 | 2.41 |
3023 | 3086 | 7.383156 | TTTCTTATATGGTACCCCCTTACAG | 57.617 | 40.000 | 10.07 | 0.00 | 0.00 | 2.74 |
3024 | 3087 | 6.297830 | TCTTATATGGTACCCCCTTACAGA | 57.702 | 41.667 | 10.07 | 0.00 | 0.00 | 3.41 |
3025 | 3088 | 6.320518 | TCTTATATGGTACCCCCTTACAGAG | 58.679 | 44.000 | 10.07 | 0.00 | 0.00 | 3.35 |
3026 | 3089 | 2.191981 | ATGGTACCCCCTTACAGAGG | 57.808 | 55.000 | 10.07 | 0.00 | 45.86 | 3.69 |
3060 | 3124 | 8.152309 | AGAGAATAGAGTTATCAAGCAAATGC | 57.848 | 34.615 | 0.00 | 0.00 | 42.49 | 3.56 |
3097 | 3161 | 4.460382 | CCATTTATGTGCACTTCAGGAGTT | 59.540 | 41.667 | 19.41 | 0.00 | 36.10 | 3.01 |
3098 | 3162 | 5.392380 | CCATTTATGTGCACTTCAGGAGTTC | 60.392 | 44.000 | 19.41 | 0.00 | 36.10 | 3.01 |
3099 | 3163 | 2.936919 | ATGTGCACTTCAGGAGTTCA | 57.063 | 45.000 | 19.41 | 0.00 | 36.10 | 3.18 |
3115 | 3179 | 2.816087 | AGTTCAGCAGCACTTGGTAATG | 59.184 | 45.455 | 0.00 | 0.00 | 35.30 | 1.90 |
3120 | 3184 | 2.061028 | GCAGCACTTGGTAATGTTTGC | 58.939 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
3162 | 3229 | 2.703007 | GACCATATTCCTCCTGTCTGCT | 59.297 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3186 | 3253 | 8.838452 | CTTGAATTGACAAGCTGAGAATATTC | 57.162 | 34.615 | 7.41 | 7.41 | 40.24 | 1.75 |
3188 | 3255 | 6.595326 | TGAATTGACAAGCTGAGAATATTCGT | 59.405 | 34.615 | 9.78 | 0.05 | 0.00 | 3.85 |
3208 | 3275 | 6.698359 | TCGTTTTTGTTTGTCTTTTGAAGG | 57.302 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
3209 | 3276 | 6.448006 | TCGTTTTTGTTTGTCTTTTGAAGGA | 58.552 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3210 | 3277 | 6.924060 | TCGTTTTTGTTTGTCTTTTGAAGGAA | 59.076 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
3211 | 3278 | 7.438459 | TCGTTTTTGTTTGTCTTTTGAAGGAAA | 59.562 | 29.630 | 0.00 | 0.00 | 0.00 | 3.13 |
3212 | 3279 | 8.064814 | CGTTTTTGTTTGTCTTTTGAAGGAAAA | 58.935 | 29.630 | 0.00 | 0.00 | 32.44 | 2.29 |
3213 | 3280 | 9.723447 | GTTTTTGTTTGTCTTTTGAAGGAAAAA | 57.277 | 25.926 | 0.00 | 0.00 | 33.04 | 1.94 |
3217 | 3284 | 8.419076 | TGTTTGTCTTTTGAAGGAAAAATAGC | 57.581 | 30.769 | 0.00 | 0.00 | 33.04 | 2.97 |
3218 | 3285 | 8.037758 | TGTTTGTCTTTTGAAGGAAAAATAGCA | 58.962 | 29.630 | 0.00 | 0.00 | 33.04 | 3.49 |
3219 | 3286 | 9.045223 | GTTTGTCTTTTGAAGGAAAAATAGCAT | 57.955 | 29.630 | 0.00 | 0.00 | 33.04 | 3.79 |
3220 | 3287 | 8.592105 | TTGTCTTTTGAAGGAAAAATAGCATG | 57.408 | 30.769 | 0.00 | 0.00 | 33.04 | 4.06 |
3221 | 3288 | 7.950512 | TGTCTTTTGAAGGAAAAATAGCATGA | 58.049 | 30.769 | 0.00 | 0.00 | 33.04 | 3.07 |
3222 | 3289 | 8.420222 | TGTCTTTTGAAGGAAAAATAGCATGAA | 58.580 | 29.630 | 0.00 | 0.00 | 33.04 | 2.57 |
3223 | 3290 | 9.260002 | GTCTTTTGAAGGAAAAATAGCATGAAA | 57.740 | 29.630 | 0.00 | 0.00 | 33.04 | 2.69 |
3232 | 3299 | 6.587608 | GGAAAAATAGCATGAAACTCCTTGTG | 59.412 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
3243 | 3310 | 6.329496 | TGAAACTCCTTGTGTTCAAATTCAC | 58.671 | 36.000 | 0.00 | 0.00 | 32.87 | 3.18 |
3244 | 3311 | 5.913137 | AACTCCTTGTGTTCAAATTCACA | 57.087 | 34.783 | 0.00 | 0.00 | 41.81 | 3.58 |
3245 | 3312 | 5.505173 | ACTCCTTGTGTTCAAATTCACAG | 57.495 | 39.130 | 0.00 | 0.00 | 43.75 | 3.66 |
3246 | 3313 | 4.202050 | ACTCCTTGTGTTCAAATTCACAGC | 60.202 | 41.667 | 0.00 | 0.00 | 43.75 | 4.40 |
3247 | 3314 | 3.044986 | CCTTGTGTTCAAATTCACAGCG | 58.955 | 45.455 | 0.00 | 0.00 | 43.75 | 5.18 |
3248 | 3315 | 3.489059 | CCTTGTGTTCAAATTCACAGCGT | 60.489 | 43.478 | 0.00 | 0.00 | 43.75 | 5.07 |
3249 | 3316 | 3.773860 | TGTGTTCAAATTCACAGCGTT | 57.226 | 38.095 | 0.00 | 0.00 | 39.23 | 4.84 |
3250 | 3317 | 4.103365 | TGTGTTCAAATTCACAGCGTTT | 57.897 | 36.364 | 0.00 | 0.00 | 39.23 | 3.60 |
3251 | 3318 | 4.101942 | TGTGTTCAAATTCACAGCGTTTC | 58.898 | 39.130 | 0.00 | 0.00 | 39.23 | 2.78 |
3252 | 3319 | 3.177643 | GTGTTCAAATTCACAGCGTTTCG | 59.822 | 43.478 | 0.00 | 0.00 | 35.04 | 3.46 |
3253 | 3320 | 3.064134 | TGTTCAAATTCACAGCGTTTCGA | 59.936 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
3254 | 3321 | 3.519908 | TCAAATTCACAGCGTTTCGAG | 57.480 | 42.857 | 0.00 | 0.00 | 0.00 | 4.04 |
3260 | 3438 | 2.863739 | TCACAGCGTTTCGAGTGATAG | 58.136 | 47.619 | 11.48 | 0.00 | 38.04 | 2.08 |
3278 | 3456 | 6.599638 | AGTGATAGGAGTAACAAAATCAAGCC | 59.400 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
3279 | 3457 | 6.374333 | GTGATAGGAGTAACAAAATCAAGCCA | 59.626 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
3282 | 3460 | 6.029346 | AGGAGTAACAAAATCAAGCCATTG | 57.971 | 37.500 | 0.00 | 0.00 | 37.80 | 2.82 |
3286 | 3464 | 7.296628 | AGTAACAAAATCAAGCCATTGGTTA | 57.703 | 32.000 | 4.26 | 0.00 | 38.84 | 2.85 |
3288 | 3466 | 5.806654 | ACAAAATCAAGCCATTGGTTAGT | 57.193 | 34.783 | 4.26 | 0.00 | 38.84 | 2.24 |
3321 | 3499 | 7.328249 | GTGCTTATTTTACTGCATTGTGCTTTA | 59.672 | 33.333 | 3.41 | 0.00 | 45.31 | 1.85 |
3351 | 3529 | 3.023949 | ATGGACGCTGGAGAGCCAC | 62.024 | 63.158 | 0.00 | 0.00 | 42.91 | 5.01 |
3411 | 3591 | 2.099098 | CGAGTCTTTTGTTGTGCCCTTT | 59.901 | 45.455 | 0.00 | 0.00 | 0.00 | 3.11 |
3412 | 3592 | 3.447742 | GAGTCTTTTGTTGTGCCCTTTG | 58.552 | 45.455 | 0.00 | 0.00 | 0.00 | 2.77 |
3413 | 3593 | 1.933181 | GTCTTTTGTTGTGCCCTTTGC | 59.067 | 47.619 | 0.00 | 0.00 | 41.77 | 3.68 |
3422 | 3602 | 4.904466 | GCCCTTTGCATTGCTCAG | 57.096 | 55.556 | 10.49 | 5.52 | 40.77 | 3.35 |
3423 | 3603 | 1.969862 | GCCCTTTGCATTGCTCAGT | 59.030 | 52.632 | 10.49 | 0.00 | 40.77 | 3.41 |
3424 | 3604 | 0.389426 | GCCCTTTGCATTGCTCAGTG | 60.389 | 55.000 | 10.49 | 0.00 | 40.77 | 3.66 |
3425 | 3605 | 1.250328 | CCCTTTGCATTGCTCAGTGA | 58.750 | 50.000 | 10.49 | 0.00 | 0.00 | 3.41 |
3426 | 3606 | 1.614903 | CCCTTTGCATTGCTCAGTGAA | 59.385 | 47.619 | 10.49 | 0.00 | 0.00 | 3.18 |
3427 | 3607 | 2.232941 | CCCTTTGCATTGCTCAGTGAAT | 59.767 | 45.455 | 10.49 | 0.00 | 0.00 | 2.57 |
3480 | 3660 | 3.012518 | ACACACATTCATTAGCTCTGCC | 58.987 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
3571 | 3759 | 0.456824 | CACTACTCTCACGCACGCAT | 60.457 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
3681 | 3891 | 1.738099 | CGCAAAGACTGTCCCGGAG | 60.738 | 63.158 | 0.73 | 0.00 | 0.00 | 4.63 |
3907 | 4117 | 4.459089 | GTGCGGACTGGGAGGAGC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
3945 | 4155 | 1.080705 | GAAGCTACACGCACTCGGT | 60.081 | 57.895 | 0.00 | 0.00 | 42.61 | 4.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
344 | 350 | 1.988834 | AATGGTCCGCCGAAATTCGC | 61.989 | 55.000 | 10.24 | 4.90 | 38.82 | 4.70 |
347 | 353 | 0.808755 | GTGAATGGTCCGCCGAAATT | 59.191 | 50.000 | 0.00 | 0.00 | 37.67 | 1.82 |
512 | 532 | 6.882678 | GCTAAGTTTAGTCCCACCTTGAAATA | 59.117 | 38.462 | 1.28 | 0.00 | 33.32 | 1.40 |
513 | 533 | 5.710567 | GCTAAGTTTAGTCCCACCTTGAAAT | 59.289 | 40.000 | 1.28 | 0.00 | 33.32 | 2.17 |
516 | 536 | 3.649023 | TGCTAAGTTTAGTCCCACCTTGA | 59.351 | 43.478 | 1.28 | 0.00 | 33.32 | 3.02 |
627 | 647 | 3.864789 | AGGTTTGGCTATCCGATCAAT | 57.135 | 42.857 | 0.00 | 0.00 | 34.14 | 2.57 |
655 | 675 | 0.868406 | GAGCCGGTGTTTCAGTTCAG | 59.132 | 55.000 | 1.90 | 0.00 | 0.00 | 3.02 |
695 | 715 | 8.104838 | ACTCCTCCTTCTACTACTACTGTAAT | 57.895 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
696 | 716 | 7.507797 | ACTCCTCCTTCTACTACTACTGTAA | 57.492 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
697 | 717 | 7.507797 | AACTCCTCCTTCTACTACTACTGTA | 57.492 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
698 | 718 | 6.391479 | AACTCCTCCTTCTACTACTACTGT | 57.609 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
702 | 722 | 7.042106 | AGGAAAACTCCTCCTTCTACTACTA | 57.958 | 40.000 | 0.00 | 0.00 | 40.61 | 1.82 |
714 | 734 | 6.575162 | TTGATTTAGCAAGGAAAACTCCTC | 57.425 | 37.500 | 0.00 | 0.00 | 39.65 | 3.71 |
790 | 811 | 8.969260 | TGCTTGACACATCATCTATTTTATCT | 57.031 | 30.769 | 0.00 | 0.00 | 33.85 | 1.98 |
796 | 817 | 9.961265 | CATTTATTGCTTGACACATCATCTATT | 57.039 | 29.630 | 0.00 | 0.00 | 33.85 | 1.73 |
797 | 818 | 9.346005 | TCATTTATTGCTTGACACATCATCTAT | 57.654 | 29.630 | 0.00 | 0.00 | 33.85 | 1.98 |
798 | 819 | 8.735692 | TCATTTATTGCTTGACACATCATCTA | 57.264 | 30.769 | 0.00 | 0.00 | 33.85 | 1.98 |
799 | 820 | 7.634671 | TCATTTATTGCTTGACACATCATCT | 57.365 | 32.000 | 0.00 | 0.00 | 33.85 | 2.90 |
800 | 821 | 8.692110 | TTTCATTTATTGCTTGACACATCATC | 57.308 | 30.769 | 0.00 | 0.00 | 33.85 | 2.92 |
801 | 822 | 9.491675 | TTTTTCATTTATTGCTTGACACATCAT | 57.508 | 25.926 | 0.00 | 0.00 | 33.85 | 2.45 |
802 | 823 | 8.883954 | TTTTTCATTTATTGCTTGACACATCA | 57.116 | 26.923 | 0.00 | 0.00 | 0.00 | 3.07 |
825 | 846 | 6.604795 | AGCTATGTTATCACATGCCTCTTTTT | 59.395 | 34.615 | 2.68 | 0.00 | 43.92 | 1.94 |
826 | 847 | 6.125029 | AGCTATGTTATCACATGCCTCTTTT | 58.875 | 36.000 | 2.68 | 0.00 | 43.92 | 2.27 |
827 | 848 | 5.688807 | AGCTATGTTATCACATGCCTCTTT | 58.311 | 37.500 | 2.68 | 0.00 | 43.92 | 2.52 |
828 | 849 | 5.301835 | AGCTATGTTATCACATGCCTCTT | 57.698 | 39.130 | 2.68 | 0.00 | 43.92 | 2.85 |
829 | 850 | 4.970860 | AGCTATGTTATCACATGCCTCT | 57.029 | 40.909 | 2.68 | 0.00 | 43.92 | 3.69 |
830 | 851 | 5.788450 | ACTAGCTATGTTATCACATGCCTC | 58.212 | 41.667 | 2.68 | 0.00 | 43.92 | 4.70 |
831 | 852 | 5.815233 | ACTAGCTATGTTATCACATGCCT | 57.185 | 39.130 | 2.68 | 2.02 | 43.92 | 4.75 |
832 | 853 | 7.155328 | AGTAACTAGCTATGTTATCACATGCC | 58.845 | 38.462 | 14.69 | 0.00 | 43.92 | 4.40 |
833 | 854 | 9.862371 | ATAGTAACTAGCTATGTTATCACATGC | 57.138 | 33.333 | 14.69 | 4.91 | 43.92 | 4.06 |
861 | 882 | 9.755804 | CTTGATATGTGTGATGTTACTCATACT | 57.244 | 33.333 | 10.75 | 3.32 | 38.84 | 2.12 |
862 | 883 | 8.982685 | CCTTGATATGTGTGATGTTACTCATAC | 58.017 | 37.037 | 0.00 | 5.35 | 38.84 | 2.39 |
863 | 884 | 7.657354 | GCCTTGATATGTGTGATGTTACTCATA | 59.343 | 37.037 | 0.00 | 0.00 | 39.73 | 2.15 |
864 | 885 | 6.484643 | GCCTTGATATGTGTGATGTTACTCAT | 59.515 | 38.462 | 0.00 | 0.00 | 38.11 | 2.90 |
865 | 886 | 5.817296 | GCCTTGATATGTGTGATGTTACTCA | 59.183 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
866 | 887 | 5.817296 | TGCCTTGATATGTGTGATGTTACTC | 59.183 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
867 | 888 | 5.744171 | TGCCTTGATATGTGTGATGTTACT | 58.256 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
868 | 889 | 6.316140 | TCTTGCCTTGATATGTGTGATGTTAC | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 2.50 |
869 | 890 | 6.413892 | TCTTGCCTTGATATGTGTGATGTTA | 58.586 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
870 | 891 | 5.255687 | TCTTGCCTTGATATGTGTGATGTT | 58.744 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
871 | 892 | 4.847198 | TCTTGCCTTGATATGTGTGATGT | 58.153 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
872 | 893 | 5.529800 | TCATCTTGCCTTGATATGTGTGATG | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
873 | 894 | 5.687780 | TCATCTTGCCTTGATATGTGTGAT | 58.312 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
874 | 895 | 5.101648 | TCATCTTGCCTTGATATGTGTGA | 57.898 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
875 | 896 | 5.823209 | TTCATCTTGCCTTGATATGTGTG | 57.177 | 39.130 | 0.00 | 0.00 | 0.00 | 3.82 |
876 | 897 | 6.363065 | AGATTCATCTTGCCTTGATATGTGT | 58.637 | 36.000 | 0.00 | 0.00 | 31.97 | 3.72 |
877 | 898 | 6.879276 | AGATTCATCTTGCCTTGATATGTG | 57.121 | 37.500 | 0.00 | 0.00 | 31.97 | 3.21 |
878 | 899 | 9.887629 | CTATAGATTCATCTTGCCTTGATATGT | 57.112 | 33.333 | 0.00 | 0.00 | 38.32 | 2.29 |
879 | 900 | 9.887629 | ACTATAGATTCATCTTGCCTTGATATG | 57.112 | 33.333 | 6.78 | 0.00 | 38.32 | 1.78 |
881 | 902 | 9.319060 | AGACTATAGATTCATCTTGCCTTGATA | 57.681 | 33.333 | 6.78 | 0.00 | 38.32 | 2.15 |
882 | 903 | 8.204903 | AGACTATAGATTCATCTTGCCTTGAT | 57.795 | 34.615 | 6.78 | 0.00 | 38.32 | 2.57 |
883 | 904 | 7.609097 | AGACTATAGATTCATCTTGCCTTGA | 57.391 | 36.000 | 6.78 | 0.00 | 38.32 | 3.02 |
884 | 905 | 9.941325 | ATTAGACTATAGATTCATCTTGCCTTG | 57.059 | 33.333 | 6.78 | 0.00 | 38.32 | 3.61 |
902 | 923 | 9.448438 | ACATGCAACACTTCATTTATTAGACTA | 57.552 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
903 | 924 | 8.340618 | ACATGCAACACTTCATTTATTAGACT | 57.659 | 30.769 | 0.00 | 0.00 | 0.00 | 3.24 |
904 | 925 | 8.970691 | AACATGCAACACTTCATTTATTAGAC | 57.029 | 30.769 | 0.00 | 0.00 | 0.00 | 2.59 |
906 | 927 | 9.289303 | GGTAACATGCAACACTTCATTTATTAG | 57.711 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
907 | 928 | 8.797438 | TGGTAACATGCAACACTTCATTTATTA | 58.203 | 29.630 | 0.00 | 0.00 | 46.17 | 0.98 |
908 | 929 | 7.665690 | TGGTAACATGCAACACTTCATTTATT | 58.334 | 30.769 | 0.00 | 0.00 | 46.17 | 1.40 |
909 | 930 | 7.225784 | TGGTAACATGCAACACTTCATTTAT | 57.774 | 32.000 | 0.00 | 0.00 | 46.17 | 1.40 |
910 | 931 | 6.641169 | TGGTAACATGCAACACTTCATTTA | 57.359 | 33.333 | 0.00 | 0.00 | 46.17 | 1.40 |
911 | 932 | 5.528043 | TGGTAACATGCAACACTTCATTT | 57.472 | 34.783 | 0.00 | 0.00 | 46.17 | 2.32 |
927 | 948 | 6.932960 | GTGGGGAGTAATATATGTGTGGTAAC | 59.067 | 42.308 | 0.00 | 0.00 | 0.00 | 2.50 |
928 | 949 | 6.847567 | AGTGGGGAGTAATATATGTGTGGTAA | 59.152 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
929 | 950 | 6.387127 | AGTGGGGAGTAATATATGTGTGGTA | 58.613 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
930 | 951 | 5.224441 | AGTGGGGAGTAATATATGTGTGGT | 58.776 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
931 | 952 | 5.825593 | AGTGGGGAGTAATATATGTGTGG | 57.174 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
932 | 953 | 9.475620 | TCTATAGTGGGGAGTAATATATGTGTG | 57.524 | 37.037 | 0.00 | 0.00 | 0.00 | 3.82 |
933 | 954 | 9.702253 | CTCTATAGTGGGGAGTAATATATGTGT | 57.298 | 37.037 | 0.00 | 0.00 | 0.00 | 3.72 |
934 | 955 | 9.137459 | CCTCTATAGTGGGGAGTAATATATGTG | 57.863 | 40.741 | 12.29 | 0.00 | 0.00 | 3.21 |
935 | 956 | 8.857997 | ACCTCTATAGTGGGGAGTAATATATGT | 58.142 | 37.037 | 21.82 | 0.00 | 33.22 | 2.29 |
938 | 959 | 9.585650 | ACTACCTCTATAGTGGGGAGTAATATA | 57.414 | 37.037 | 22.09 | 6.34 | 34.02 | 0.86 |
939 | 960 | 8.479601 | ACTACCTCTATAGTGGGGAGTAATAT | 57.520 | 38.462 | 22.09 | 5.67 | 34.02 | 1.28 |
940 | 961 | 7.901804 | ACTACCTCTATAGTGGGGAGTAATA | 57.098 | 40.000 | 22.09 | 7.41 | 34.02 | 0.98 |
941 | 962 | 6.800223 | ACTACCTCTATAGTGGGGAGTAAT | 57.200 | 41.667 | 22.09 | 6.79 | 34.02 | 1.89 |
942 | 963 | 7.129349 | TGTTACTACCTCTATAGTGGGGAGTAA | 59.871 | 40.741 | 28.26 | 28.26 | 38.03 | 2.24 |
943 | 964 | 6.621098 | TGTTACTACCTCTATAGTGGGGAGTA | 59.379 | 42.308 | 23.32 | 23.32 | 36.09 | 2.59 |
944 | 965 | 5.434376 | TGTTACTACCTCTATAGTGGGGAGT | 59.566 | 44.000 | 24.72 | 24.72 | 36.09 | 3.85 |
945 | 966 | 5.950023 | TGTTACTACCTCTATAGTGGGGAG | 58.050 | 45.833 | 21.82 | 20.04 | 36.09 | 4.30 |
946 | 967 | 5.999987 | TGTTACTACCTCTATAGTGGGGA | 57.000 | 43.478 | 21.82 | 11.28 | 36.09 | 4.81 |
947 | 968 | 7.468496 | ACTATGTTACTACCTCTATAGTGGGG | 58.532 | 42.308 | 21.82 | 16.35 | 36.09 | 4.96 |
948 | 969 | 9.447157 | GTACTATGTTACTACCTCTATAGTGGG | 57.553 | 40.741 | 21.82 | 16.23 | 36.09 | 4.61 |
974 | 995 | 9.640963 | GCTACAATGGGTAATAACATAGAGTAG | 57.359 | 37.037 | 0.00 | 0.00 | 34.16 | 2.57 |
975 | 996 | 9.375974 | AGCTACAATGGGTAATAACATAGAGTA | 57.624 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
976 | 997 | 8.263854 | AGCTACAATGGGTAATAACATAGAGT | 57.736 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
977 | 998 | 9.862371 | CTAGCTACAATGGGTAATAACATAGAG | 57.138 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
978 | 999 | 9.375974 | ACTAGCTACAATGGGTAATAACATAGA | 57.624 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
979 | 1000 | 9.640963 | GACTAGCTACAATGGGTAATAACATAG | 57.359 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
980 | 1001 | 9.375974 | AGACTAGCTACAATGGGTAATAACATA | 57.624 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
981 | 1002 | 8.263854 | AGACTAGCTACAATGGGTAATAACAT | 57.736 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
982 | 1003 | 7.670605 | AGACTAGCTACAATGGGTAATAACA | 57.329 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
983 | 1004 | 9.473640 | GTAAGACTAGCTACAATGGGTAATAAC | 57.526 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
984 | 1005 | 9.430399 | AGTAAGACTAGCTACAATGGGTAATAA | 57.570 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
985 | 1006 | 8.857098 | CAGTAAGACTAGCTACAATGGGTAATA | 58.143 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
986 | 1007 | 7.202011 | CCAGTAAGACTAGCTACAATGGGTAAT | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 1.89 |
987 | 1008 | 6.097839 | CCAGTAAGACTAGCTACAATGGGTAA | 59.902 | 42.308 | 0.00 | 0.00 | 0.00 | 2.85 |
988 | 1009 | 5.597182 | CCAGTAAGACTAGCTACAATGGGTA | 59.403 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
989 | 1010 | 4.406003 | CCAGTAAGACTAGCTACAATGGGT | 59.594 | 45.833 | 0.00 | 0.00 | 0.00 | 4.51 |
990 | 1011 | 4.740934 | GCCAGTAAGACTAGCTACAATGGG | 60.741 | 50.000 | 12.58 | 0.00 | 30.09 | 4.00 |
991 | 1012 | 4.372656 | GCCAGTAAGACTAGCTACAATGG | 58.627 | 47.826 | 0.00 | 1.06 | 30.09 | 3.16 |
992 | 1013 | 4.045104 | CGCCAGTAAGACTAGCTACAATG | 58.955 | 47.826 | 0.00 | 0.00 | 30.53 | 2.82 |
993 | 1014 | 3.952323 | TCGCCAGTAAGACTAGCTACAAT | 59.048 | 43.478 | 0.00 | 0.00 | 30.53 | 2.71 |
994 | 1015 | 3.349927 | TCGCCAGTAAGACTAGCTACAA | 58.650 | 45.455 | 0.00 | 0.00 | 30.53 | 2.41 |
995 | 1016 | 2.943690 | CTCGCCAGTAAGACTAGCTACA | 59.056 | 50.000 | 0.00 | 0.00 | 30.53 | 2.74 |
996 | 1017 | 2.944349 | ACTCGCCAGTAAGACTAGCTAC | 59.056 | 50.000 | 0.00 | 0.00 | 30.53 | 3.58 |
997 | 1018 | 3.204526 | GACTCGCCAGTAAGACTAGCTA | 58.795 | 50.000 | 0.00 | 0.00 | 30.53 | 3.32 |
998 | 1019 | 2.018515 | GACTCGCCAGTAAGACTAGCT | 58.981 | 52.381 | 0.00 | 0.00 | 30.53 | 3.32 |
999 | 1020 | 1.743958 | TGACTCGCCAGTAAGACTAGC | 59.256 | 52.381 | 0.00 | 0.00 | 30.63 | 3.42 |
1000 | 1021 | 4.640789 | AATGACTCGCCAGTAAGACTAG | 57.359 | 45.455 | 0.00 | 0.00 | 30.63 | 2.57 |
1001 | 1022 | 6.096423 | ACAATAATGACTCGCCAGTAAGACTA | 59.904 | 38.462 | 0.00 | 0.00 | 30.63 | 2.59 |
1002 | 1023 | 5.105310 | ACAATAATGACTCGCCAGTAAGACT | 60.105 | 40.000 | 0.00 | 0.00 | 30.63 | 3.24 |
1003 | 1024 | 5.109903 | ACAATAATGACTCGCCAGTAAGAC | 58.890 | 41.667 | 0.00 | 0.00 | 30.63 | 3.01 |
1004 | 1025 | 5.339008 | ACAATAATGACTCGCCAGTAAGA | 57.661 | 39.130 | 0.00 | 0.00 | 30.63 | 2.10 |
1005 | 1026 | 4.508124 | GGACAATAATGACTCGCCAGTAAG | 59.492 | 45.833 | 0.00 | 0.00 | 30.63 | 2.34 |
1006 | 1027 | 4.081365 | TGGACAATAATGACTCGCCAGTAA | 60.081 | 41.667 | 0.00 | 0.00 | 30.63 | 2.24 |
1007 | 1028 | 3.449377 | TGGACAATAATGACTCGCCAGTA | 59.551 | 43.478 | 0.00 | 0.00 | 30.63 | 2.74 |
1008 | 1029 | 2.236146 | TGGACAATAATGACTCGCCAGT | 59.764 | 45.455 | 0.00 | 0.00 | 34.57 | 4.00 |
1009 | 1030 | 2.905075 | TGGACAATAATGACTCGCCAG | 58.095 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
1010 | 1031 | 3.558931 | ATGGACAATAATGACTCGCCA | 57.441 | 42.857 | 0.00 | 0.00 | 0.00 | 5.69 |
1011 | 1032 | 4.498009 | CCAAATGGACAATAATGACTCGCC | 60.498 | 45.833 | 0.00 | 0.00 | 37.39 | 5.54 |
1012 | 1033 | 4.498009 | CCCAAATGGACAATAATGACTCGC | 60.498 | 45.833 | 0.00 | 0.00 | 37.39 | 5.03 |
1013 | 1034 | 4.881273 | TCCCAAATGGACAATAATGACTCG | 59.119 | 41.667 | 0.00 | 0.00 | 38.61 | 4.18 |
1014 | 1035 | 6.378280 | ACTTCCCAAATGGACAATAATGACTC | 59.622 | 38.462 | 0.00 | 0.00 | 45.11 | 3.36 |
1015 | 1036 | 6.256053 | ACTTCCCAAATGGACAATAATGACT | 58.744 | 36.000 | 0.00 | 0.00 | 45.11 | 3.41 |
1016 | 1037 | 6.405842 | GGACTTCCCAAATGGACAATAATGAC | 60.406 | 42.308 | 0.00 | 0.00 | 45.11 | 3.06 |
1017 | 1038 | 5.656416 | GGACTTCCCAAATGGACAATAATGA | 59.344 | 40.000 | 0.00 | 0.00 | 45.11 | 2.57 |
1018 | 1039 | 5.421693 | TGGACTTCCCAAATGGACAATAATG | 59.578 | 40.000 | 0.00 | 0.00 | 45.11 | 1.90 |
1019 | 1040 | 5.588845 | TGGACTTCCCAAATGGACAATAAT | 58.411 | 37.500 | 0.00 | 0.00 | 45.11 | 1.28 |
1020 | 1041 | 5.004361 | TGGACTTCCCAAATGGACAATAA | 57.996 | 39.130 | 0.00 | 0.00 | 45.11 | 1.40 |
1021 | 1042 | 4.666412 | TGGACTTCCCAAATGGACAATA | 57.334 | 40.909 | 0.00 | 0.00 | 45.11 | 1.90 |
1052 | 1073 | 6.639632 | AACTCTTGTGCAATGTTCAATAGT | 57.360 | 33.333 | 0.00 | 0.00 | 32.63 | 2.12 |
1070 | 1104 | 2.943033 | CACACGTTCCCTGAAAAACTCT | 59.057 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
1078 | 1118 | 0.673985 | CACTCTCACACGTTCCCTGA | 59.326 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1088 | 1128 | 2.666317 | TCAGTTGGACTCACTCTCACA | 58.334 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
1102 | 1142 | 1.318576 | GTGGGTGTCCCTTTCAGTTG | 58.681 | 55.000 | 6.38 | 0.00 | 45.70 | 3.16 |
1138 | 1178 | 4.041917 | TCGGTGTCGCACGGGTAC | 62.042 | 66.667 | 14.19 | 0.00 | 35.78 | 3.34 |
1139 | 1179 | 4.041917 | GTCGGTGTCGCACGGGTA | 62.042 | 66.667 | 14.19 | 0.00 | 35.78 | 3.69 |
1172 | 1212 | 3.917760 | GATCTCGGCCTGGGTCGG | 61.918 | 72.222 | 13.74 | 4.95 | 44.10 | 4.79 |
1193 | 1233 | 2.568546 | GGGGGAGATGGGGAATTTTT | 57.431 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
1850 | 1890 | 2.406205 | GGCGACGAGGTCATAGACT | 58.594 | 57.895 | 0.00 | 0.00 | 32.47 | 3.24 |
2090 | 2130 | 0.623723 | TTTCTACCATGGCAGGACCC | 59.376 | 55.000 | 13.04 | 0.00 | 37.83 | 4.46 |
2240 | 2280 | 1.901591 | CTGACACCAATGGAGCTGTT | 58.098 | 50.000 | 6.16 | 0.00 | 0.00 | 3.16 |
2261 | 2301 | 1.995626 | AGTAGGGTTGGCCGATGCT | 60.996 | 57.895 | 0.00 | 0.00 | 37.74 | 3.79 |
2267 | 2307 | 2.436115 | GCGACAGTAGGGTTGGCC | 60.436 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
2279 | 2319 | 0.829990 | TATGCTCCTCATTGGCGACA | 59.170 | 50.000 | 0.00 | 0.00 | 36.63 | 4.35 |
2372 | 2412 | 2.997485 | AGAAGACAAAATCGCCAAGC | 57.003 | 45.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2438 | 2478 | 0.742990 | TGGCAAGGTAGCACGCATAC | 60.743 | 55.000 | 7.72 | 0.00 | 35.83 | 2.39 |
2657 | 2697 | 6.804677 | TCTCAATTGCTTTTTAGCTTGACAA | 58.195 | 32.000 | 0.00 | 0.00 | 35.49 | 3.18 |
2699 | 2739 | 7.051623 | ACAAGATGTGACCAACAAAGTAGTAA | 58.948 | 34.615 | 0.00 | 0.00 | 43.61 | 2.24 |
2774 | 2814 | 6.103997 | TGATCCCAGATAAAACTGACGTTAC | 58.896 | 40.000 | 0.00 | 0.00 | 39.94 | 2.50 |
2775 | 2815 | 6.288941 | TGATCCCAGATAAAACTGACGTTA | 57.711 | 37.500 | 0.00 | 0.00 | 39.94 | 3.18 |
2776 | 2816 | 5.160607 | TGATCCCAGATAAAACTGACGTT | 57.839 | 39.130 | 0.00 | 0.00 | 39.94 | 3.99 |
2777 | 2817 | 4.819105 | TGATCCCAGATAAAACTGACGT | 57.181 | 40.909 | 0.00 | 0.00 | 39.94 | 4.34 |
2778 | 2818 | 5.178797 | AGTTGATCCCAGATAAAACTGACG | 58.821 | 41.667 | 0.00 | 0.00 | 39.94 | 4.35 |
2779 | 2819 | 7.331791 | ACTAGTTGATCCCAGATAAAACTGAC | 58.668 | 38.462 | 12.22 | 0.00 | 39.94 | 3.51 |
2813 | 2868 | 5.342525 | GCCATGTTGATAGAACTATACGACG | 59.657 | 44.000 | 0.00 | 0.00 | 0.00 | 5.12 |
2847 | 2902 | 6.211515 | ACTGAAATGCAAATGTGTTCTTCTC | 58.788 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2850 | 2905 | 6.817641 | TGAAACTGAAATGCAAATGTGTTCTT | 59.182 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
2881 | 2936 | 6.573617 | AAAAACAAGAAGAACGCAAGAATG | 57.426 | 33.333 | 0.00 | 0.00 | 43.62 | 2.67 |
2943 | 2998 | 6.035327 | GGCTGATTGTTTAAAAGCATGATCAC | 59.965 | 38.462 | 0.00 | 0.00 | 33.52 | 3.06 |
2944 | 2999 | 6.071221 | AGGCTGATTGTTTAAAAGCATGATCA | 60.071 | 34.615 | 10.21 | 0.00 | 33.52 | 2.92 |
2945 | 3000 | 6.255020 | CAGGCTGATTGTTTAAAAGCATGATC | 59.745 | 38.462 | 15.04 | 2.06 | 40.66 | 2.92 |
2948 | 3003 | 4.092383 | GCAGGCTGATTGTTTAAAAGCATG | 59.908 | 41.667 | 20.86 | 15.58 | 40.91 | 4.06 |
2949 | 3004 | 4.248058 | GCAGGCTGATTGTTTAAAAGCAT | 58.752 | 39.130 | 20.86 | 1.40 | 33.52 | 3.79 |
2950 | 3005 | 3.069300 | TGCAGGCTGATTGTTTAAAAGCA | 59.931 | 39.130 | 20.86 | 0.20 | 33.52 | 3.91 |
2951 | 3006 | 3.652274 | TGCAGGCTGATTGTTTAAAAGC | 58.348 | 40.909 | 20.86 | 0.00 | 0.00 | 3.51 |
2952 | 3007 | 6.790285 | AATTGCAGGCTGATTGTTTAAAAG | 57.210 | 33.333 | 20.86 | 0.00 | 0.00 | 2.27 |
2953 | 3008 | 7.498570 | AGAAAATTGCAGGCTGATTGTTTAAAA | 59.501 | 29.630 | 20.86 | 0.00 | 0.00 | 1.52 |
2954 | 3009 | 6.991531 | AGAAAATTGCAGGCTGATTGTTTAAA | 59.008 | 30.769 | 20.86 | 0.00 | 0.00 | 1.52 |
2955 | 3010 | 6.523840 | AGAAAATTGCAGGCTGATTGTTTAA | 58.476 | 32.000 | 20.86 | 1.33 | 0.00 | 1.52 |
2956 | 3011 | 6.100404 | AGAAAATTGCAGGCTGATTGTTTA | 57.900 | 33.333 | 20.86 | 0.00 | 0.00 | 2.01 |
2957 | 3012 | 4.964593 | AGAAAATTGCAGGCTGATTGTTT | 58.035 | 34.783 | 20.86 | 12.11 | 0.00 | 2.83 |
2958 | 3013 | 4.612264 | AGAAAATTGCAGGCTGATTGTT | 57.388 | 36.364 | 20.86 | 4.61 | 0.00 | 2.83 |
2959 | 3014 | 4.612264 | AAGAAAATTGCAGGCTGATTGT | 57.388 | 36.364 | 20.86 | 4.88 | 0.00 | 2.71 |
2965 | 3020 | 4.964593 | ACATGAAAAGAAAATTGCAGGCT | 58.035 | 34.783 | 0.00 | 0.00 | 0.00 | 4.58 |
3016 | 3079 | 7.899648 | TTCTCTATTTACTCCCTCTGTAAGG | 57.100 | 40.000 | 0.00 | 0.00 | 45.77 | 2.69 |
3020 | 3083 | 8.507761 | ACTCTATTCTCTATTTACTCCCTCTGT | 58.492 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
3021 | 3084 | 8.934023 | ACTCTATTCTCTATTTACTCCCTCTG | 57.066 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
3064 | 3128 | 8.449251 | AAGTGCACATAAATGGTTTTCAAATT | 57.551 | 26.923 | 21.04 | 0.00 | 0.00 | 1.82 |
3083 | 3147 | 0.469494 | TGCTGAACTCCTGAAGTGCA | 59.531 | 50.000 | 0.00 | 0.00 | 41.61 | 4.57 |
3087 | 3151 | 1.155042 | GTGCTGCTGAACTCCTGAAG | 58.845 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3097 | 3161 | 2.566833 | ACATTACCAAGTGCTGCTGA | 57.433 | 45.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3098 | 3162 | 3.311106 | CAAACATTACCAAGTGCTGCTG | 58.689 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
3099 | 3163 | 2.288395 | GCAAACATTACCAAGTGCTGCT | 60.288 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
3115 | 3179 | 7.031975 | CCTAGAATCAAATGAGAAAGGCAAAC | 58.968 | 38.462 | 0.00 | 0.00 | 0.00 | 2.93 |
3120 | 3184 | 5.825151 | GGTCCCTAGAATCAAATGAGAAAGG | 59.175 | 44.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3162 | 3229 | 7.119699 | ACGAATATTCTCAGCTTGTCAATTCAA | 59.880 | 33.333 | 13.45 | 0.00 | 0.00 | 2.69 |
3186 | 3253 | 6.698359 | TCCTTCAAAAGACAAACAAAAACG | 57.302 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
3204 | 3271 | 7.163001 | AGGAGTTTCATGCTATTTTTCCTTC | 57.837 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3205 | 3272 | 7.015584 | ACAAGGAGTTTCATGCTATTTTTCCTT | 59.984 | 33.333 | 0.00 | 0.00 | 41.77 | 3.36 |
3206 | 3273 | 6.494835 | ACAAGGAGTTTCATGCTATTTTTCCT | 59.505 | 34.615 | 0.00 | 0.00 | 34.16 | 3.36 |
3207 | 3274 | 6.587608 | CACAAGGAGTTTCATGCTATTTTTCC | 59.412 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
3208 | 3275 | 7.147976 | ACACAAGGAGTTTCATGCTATTTTTC | 58.852 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
3209 | 3276 | 7.054491 | ACACAAGGAGTTTCATGCTATTTTT | 57.946 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3210 | 3277 | 6.655078 | ACACAAGGAGTTTCATGCTATTTT | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3211 | 3278 | 6.265196 | TGAACACAAGGAGTTTCATGCTATTT | 59.735 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3212 | 3279 | 5.769662 | TGAACACAAGGAGTTTCATGCTATT | 59.230 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3213 | 3280 | 5.316167 | TGAACACAAGGAGTTTCATGCTAT | 58.684 | 37.500 | 0.00 | 0.00 | 0.00 | 2.97 |
3214 | 3281 | 4.713553 | TGAACACAAGGAGTTTCATGCTA | 58.286 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
3215 | 3282 | 3.554934 | TGAACACAAGGAGTTTCATGCT | 58.445 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
3216 | 3283 | 3.988379 | TGAACACAAGGAGTTTCATGC | 57.012 | 42.857 | 0.00 | 0.00 | 0.00 | 4.06 |
3217 | 3284 | 6.979817 | TGAATTTGAACACAAGGAGTTTCATG | 59.020 | 34.615 | 0.00 | 0.00 | 31.84 | 3.07 |
3218 | 3285 | 6.980397 | GTGAATTTGAACACAAGGAGTTTCAT | 59.020 | 34.615 | 0.00 | 0.00 | 37.05 | 2.57 |
3219 | 3286 | 6.071672 | TGTGAATTTGAACACAAGGAGTTTCA | 60.072 | 34.615 | 0.00 | 0.00 | 42.72 | 2.69 |
3220 | 3287 | 6.329496 | TGTGAATTTGAACACAAGGAGTTTC | 58.671 | 36.000 | 0.00 | 0.00 | 42.72 | 2.78 |
3221 | 3288 | 6.279513 | TGTGAATTTGAACACAAGGAGTTT | 57.720 | 33.333 | 0.00 | 0.00 | 42.72 | 2.66 |
3222 | 3289 | 5.679638 | GCTGTGAATTTGAACACAAGGAGTT | 60.680 | 40.000 | 0.00 | 0.00 | 44.50 | 3.01 |
3223 | 3290 | 4.202050 | GCTGTGAATTTGAACACAAGGAGT | 60.202 | 41.667 | 0.00 | 0.00 | 44.50 | 3.85 |
3232 | 3299 | 3.613563 | TCGAAACGCTGTGAATTTGAAC | 58.386 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
3243 | 3310 | 2.159366 | ACTCCTATCACTCGAAACGCTG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3244 | 3311 | 2.093106 | ACTCCTATCACTCGAAACGCT | 58.907 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
3245 | 3312 | 2.563471 | ACTCCTATCACTCGAAACGC | 57.437 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
3246 | 3313 | 4.978186 | TGTTACTCCTATCACTCGAAACG | 58.022 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
3247 | 3314 | 7.647907 | TTTTGTTACTCCTATCACTCGAAAC | 57.352 | 36.000 | 0.00 | 0.00 | 0.00 | 2.78 |
3248 | 3315 | 8.092068 | TGATTTTGTTACTCCTATCACTCGAAA | 58.908 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
3249 | 3316 | 7.608153 | TGATTTTGTTACTCCTATCACTCGAA | 58.392 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
3250 | 3317 | 7.165460 | TGATTTTGTTACTCCTATCACTCGA | 57.835 | 36.000 | 0.00 | 0.00 | 0.00 | 4.04 |
3251 | 3318 | 7.464710 | GCTTGATTTTGTTACTCCTATCACTCG | 60.465 | 40.741 | 0.00 | 0.00 | 0.00 | 4.18 |
3252 | 3319 | 7.201652 | GGCTTGATTTTGTTACTCCTATCACTC | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
3253 | 3320 | 6.599638 | GGCTTGATTTTGTTACTCCTATCACT | 59.400 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
3254 | 3321 | 6.374333 | TGGCTTGATTTTGTTACTCCTATCAC | 59.626 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
3260 | 3438 | 5.170748 | CCAATGGCTTGATTTTGTTACTCC | 58.829 | 41.667 | 0.00 | 0.00 | 34.04 | 3.85 |
3278 | 3456 | 5.705609 | AAGCACCTACAAACTAACCAATG | 57.294 | 39.130 | 0.00 | 0.00 | 0.00 | 2.82 |
3279 | 3457 | 8.417273 | AAATAAGCACCTACAAACTAACCAAT | 57.583 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
3282 | 3460 | 9.006839 | AGTAAAATAAGCACCTACAAACTAACC | 57.993 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
3286 | 3464 | 6.488683 | TGCAGTAAAATAAGCACCTACAAACT | 59.511 | 34.615 | 0.00 | 0.00 | 31.05 | 2.66 |
3288 | 3466 | 6.885952 | TGCAGTAAAATAAGCACCTACAAA | 57.114 | 33.333 | 0.00 | 0.00 | 31.05 | 2.83 |
3321 | 3499 | 3.378112 | CCAGCGTCCATGATAAACAACAT | 59.622 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
3389 | 3567 | 0.310854 | GGGCACAACAAAAGACTCGG | 59.689 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3420 | 3600 | 3.453717 | TCCCTCTTCCATCAGATTCACTG | 59.546 | 47.826 | 0.00 | 0.00 | 46.97 | 3.66 |
3421 | 3601 | 3.710677 | CTCCCTCTTCCATCAGATTCACT | 59.289 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
3422 | 3602 | 3.708631 | TCTCCCTCTTCCATCAGATTCAC | 59.291 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
3423 | 3603 | 3.999603 | TCTCCCTCTTCCATCAGATTCA | 58.000 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3424 | 3604 | 4.743348 | GCTTCTCCCTCTTCCATCAGATTC | 60.743 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3425 | 3605 | 3.136260 | GCTTCTCCCTCTTCCATCAGATT | 59.864 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
3426 | 3606 | 2.705127 | GCTTCTCCCTCTTCCATCAGAT | 59.295 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3427 | 3607 | 2.114616 | GCTTCTCCCTCTTCCATCAGA | 58.885 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
3480 | 3660 | 6.982141 | TGTAAAACTGTATATAACCTCAGCCG | 59.018 | 38.462 | 0.00 | 0.00 | 0.00 | 5.52 |
3681 | 3891 | 1.301479 | ACGGACGTTTTCCTCCAGC | 60.301 | 57.895 | 0.00 | 0.00 | 43.25 | 4.85 |
3742 | 3952 | 2.303022 | GTTCAGAGTCCTTCACATCCCA | 59.697 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3907 | 4117 | 2.884685 | CAGCTTCTCGGCGAGCTG | 60.885 | 66.667 | 31.01 | 29.02 | 46.69 | 4.24 |
3932 | 4142 | 1.284715 | CTGTCACCGAGTGCGTGTA | 59.715 | 57.895 | 0.00 | 0.00 | 32.98 | 2.90 |
3945 | 4155 | 3.422303 | GCGTCGCCAATGCTGTCA | 61.422 | 61.111 | 5.75 | 0.00 | 36.91 | 3.58 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.