Multiple sequence alignment - TraesCS3D01G192100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G192100 chr3D 100.000 3324 0 0 1 3324 182201495 182204818 0.000000e+00 6139.0
1 TraesCS3D01G192100 chr3D 81.193 218 37 4 1380 1595 182202808 182203023 4.410000e-39 172.0
2 TraesCS3D01G192100 chr3D 81.193 218 37 4 1314 1529 182202874 182203089 4.410000e-39 172.0
3 TraesCS3D01G192100 chr3D 92.754 69 3 1 2766 2834 182204201 182204267 7.590000e-17 99.0
4 TraesCS3D01G192100 chr3D 92.754 69 3 1 2707 2773 182204260 182204328 7.590000e-17 99.0
5 TraesCS3D01G192100 chr3B 95.092 1895 60 7 561 2438 260655038 260656916 0.000000e+00 2953.0
6 TraesCS3D01G192100 chr3B 94.523 566 27 3 1 566 260651840 260652401 0.000000e+00 870.0
7 TraesCS3D01G192100 chr3B 82.800 250 39 4 1314 1561 260655841 260656088 1.550000e-53 220.0
8 TraesCS3D01G192100 chr3A 90.951 1072 47 12 1380 2417 230091795 230092850 0.000000e+00 1397.0
9 TraesCS3D01G192100 chr3A 87.847 1045 64 22 566 1561 230091033 230092063 0.000000e+00 1168.0
10 TraesCS3D01G192100 chr3A 94.940 336 15 1 2444 2777 683039637 683039302 2.940000e-145 525.0
11 TraesCS3D01G192100 chr3A 93.529 340 16 1 2766 3099 683039374 683039035 4.950000e-138 501.0
12 TraesCS3D01G192100 chr3A 88.603 272 25 6 223 492 711681155 711681422 3.200000e-85 326.0
13 TraesCS3D01G192100 chr3A 84.768 151 21 2 84 233 663442607 663442458 2.070000e-32 150.0
14 TraesCS3D01G192100 chr3A 82.738 168 28 1 66 233 19178403 19178569 7.430000e-32 148.0
15 TraesCS3D01G192100 chr5A 93.384 393 26 0 1007 1399 352403009 352402617 1.720000e-162 582.0
16 TraesCS3D01G192100 chr5A 93.155 336 21 1 2444 2777 52739334 52738999 2.980000e-135 492.0
17 TraesCS3D01G192100 chr5A 93.525 278 11 2 2766 3037 52739071 52738795 1.110000e-109 407.0
18 TraesCS3D01G192100 chr5A 91.860 86 7 0 1380 1465 352402702 352402617 1.620000e-23 121.0
19 TraesCS3D01G192100 chr5A 95.652 46 2 0 922 967 352403072 352403027 1.280000e-09 75.0
20 TraesCS3D01G192100 chr4B 93.353 331 17 2 2766 3091 467160687 467161017 4.990000e-133 484.0
21 TraesCS3D01G192100 chr4B 91.098 337 25 4 2444 2777 467160424 467160758 5.060000e-123 451.0
22 TraesCS3D01G192100 chr4B 98.343 181 3 0 3144 3324 52650186 52650006 5.350000e-83 318.0
23 TraesCS3D01G192100 chr6B 92.447 331 23 1 2444 2772 62174305 62173975 3.880000e-129 472.0
24 TraesCS3D01G192100 chr6B 93.852 244 11 2 2766 3005 62174042 62173799 6.780000e-97 364.0
25 TraesCS3D01G192100 chr6B 87.365 277 28 5 229 504 353735413 353735143 8.950000e-81 311.0
26 TraesCS3D01G192100 chr7B 89.706 340 30 2 2443 2777 634770782 634771121 2.370000e-116 429.0
27 TraesCS3D01G192100 chr7B 88.270 341 29 5 2766 3096 634771046 634771385 6.680000e-107 398.0
28 TraesCS3D01G192100 chr7B 87.549 257 21 4 2766 3012 673968101 673967846 1.510000e-73 287.0
29 TraesCS3D01G192100 chr4A 87.164 335 31 6 2766 3090 698873568 698873900 1.460000e-98 370.0
30 TraesCS3D01G192100 chr4A 88.258 264 26 4 230 492 674616794 674617053 8.950000e-81 311.0
31 TraesCS3D01G192100 chr4A 87.546 273 26 8 224 492 614570660 614570392 3.220000e-80 309.0
32 TraesCS3D01G192100 chr7D 90.079 252 21 4 241 492 23644810 23645057 1.150000e-84 324.0
33 TraesCS3D01G192100 chr7D 98.343 181 3 0 3144 3324 29163070 29162890 5.350000e-83 318.0
34 TraesCS3D01G192100 chr7D 98.343 181 3 0 3144 3324 262293174 262292994 5.350000e-83 318.0
35 TraesCS3D01G192100 chrUn 98.343 181 3 0 3144 3324 273017929 273017749 5.350000e-83 318.0
36 TraesCS3D01G192100 chrUn 98.343 181 3 0 3144 3324 313075054 313075234 5.350000e-83 318.0
37 TraesCS3D01G192100 chrUn 84.768 151 21 2 84 233 397099672 397099523 2.070000e-32 150.0
38 TraesCS3D01G192100 chrUn 93.939 66 2 1 1053 1116 252528822 252528887 7.590000e-17 99.0
39 TraesCS3D01G192100 chrUn 86.000 100 3 6 1053 1150 47926374 47926284 2.730000e-16 97.1
40 TraesCS3D01G192100 chr5D 98.343 181 3 0 3144 3324 225855639 225855819 5.350000e-83 318.0
41 TraesCS3D01G192100 chr5D 98.333 180 3 0 3144 3323 54737080 54737259 1.920000e-82 316.0
42 TraesCS3D01G192100 chr5D 93.301 209 10 3 3118 3324 445080276 445080070 4.170000e-79 305.0
43 TraesCS3D01G192100 chr1D 98.343 181 3 0 3144 3324 361169038 361168858 5.350000e-83 318.0
44 TraesCS3D01G192100 chr1D 88.593 263 23 4 230 490 445987926 445988183 2.490000e-81 313.0
45 TraesCS3D01G192100 chr6D 88.302 265 26 4 229 492 410373781 410373521 2.490000e-81 313.0
46 TraesCS3D01G192100 chr6A 87.500 272 28 4 229 498 614646762 614646495 3.220000e-80 309.0
47 TraesCS3D01G192100 chr2B 84.568 162 24 1 72 233 474614371 474614531 3.430000e-35 159.0
48 TraesCS3D01G192100 chr2B 89.394 66 5 1 1053 1116 798747032 798747097 7.640000e-12 82.4
49 TraesCS3D01G192100 chr2A 83.432 169 26 2 66 233 63805724 63805891 4.440000e-34 156.0
50 TraesCS3D01G192100 chr2A 82.840 169 27 2 66 233 701016709 701016876 2.070000e-32 150.0
51 TraesCS3D01G192100 chr1A 83.432 169 25 3 66 233 52453475 52453641 1.600000e-33 154.0
52 TraesCS3D01G192100 chr1A 85.350 157 13 7 81 233 397087599 397087449 1.600000e-33 154.0
53 TraesCS3D01G192100 chr1B 92.424 66 3 1 1053 1116 347775468 347775533 3.530000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G192100 chr3D 182201495 182204818 3323 False 1336.200000 6139 89.5788 1 3324 5 chr3D.!!$F1 3323
1 TraesCS3D01G192100 chr3B 260651840 260656916 5076 False 1347.666667 2953 90.8050 1 2438 3 chr3B.!!$F1 2437
2 TraesCS3D01G192100 chr3A 230091033 230092850 1817 False 1282.500000 1397 89.3990 566 2417 2 chr3A.!!$F3 1851
3 TraesCS3D01G192100 chr3A 683039035 683039637 602 True 513.000000 525 94.2345 2444 3099 2 chr3A.!!$R2 655
4 TraesCS3D01G192100 chr5A 52738795 52739334 539 True 449.500000 492 93.3400 2444 3037 2 chr5A.!!$R1 593
5 TraesCS3D01G192100 chr4B 467160424 467161017 593 False 467.500000 484 92.2255 2444 3091 2 chr4B.!!$F1 647
6 TraesCS3D01G192100 chr6B 62173799 62174305 506 True 418.000000 472 93.1495 2444 3005 2 chr6B.!!$R2 561
7 TraesCS3D01G192100 chr7B 634770782 634771385 603 False 413.500000 429 88.9880 2443 3096 2 chr7B.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 3262 0.527817 CTTAGGGCCGTCGTGCTTAG 60.528 60.0 0.0 0.0 0.0 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 5148 0.038709 GCGCGAGGCATCTTCTATCT 60.039 55.0 12.1 0.0 42.87 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 161 6.867293 GGAAACTATATACCCACACGAATCTC 59.133 42.308 0.00 0.00 0.00 2.75
161 162 7.255871 GGAAACTATATACCCACACGAATCTCT 60.256 40.741 0.00 0.00 0.00 3.10
179 180 8.933807 CGAATCTCTGCATAAGATAAATGACAT 58.066 33.333 11.07 0.00 33.15 3.06
239 240 5.626142 TGTGCTTTAACAATACTCCTTCCA 58.374 37.500 0.00 0.00 0.00 3.53
244 245 9.303116 TGCTTTAACAATACTCCTTCCATTTTA 57.697 29.630 0.00 0.00 0.00 1.52
467 468 8.464770 TGATTTTGACTAAAGCAAATATGTGC 57.535 30.769 10.09 10.09 39.05 4.57
611 3253 2.429971 GTTTAGTAGAGCTTAGGGCCGT 59.570 50.000 2.24 2.24 43.05 5.68
619 3261 1.514087 CTTAGGGCCGTCGTGCTTA 59.486 57.895 0.00 0.00 0.00 3.09
620 3262 0.527817 CTTAGGGCCGTCGTGCTTAG 60.528 60.000 0.00 0.00 0.00 2.18
658 3325 1.712081 CGATCGTGGCAGCTCAAAG 59.288 57.895 7.03 0.00 0.00 2.77
747 3414 1.443872 GTACGTGTCCGCCACTCTG 60.444 63.158 0.00 0.00 42.20 3.35
916 3586 1.565305 CTCTGACCGAACATAGCAGC 58.435 55.000 0.00 0.00 0.00 5.25
974 3644 5.830457 AGCTACAGCATCAAGATCACTAGTA 59.170 40.000 3.70 0.00 45.16 1.82
975 3645 6.016360 AGCTACAGCATCAAGATCACTAGTAG 60.016 42.308 3.70 0.00 45.16 2.57
976 3646 6.238897 GCTACAGCATCAAGATCACTAGTAGT 60.239 42.308 0.00 0.00 41.59 2.73
1212 3882 4.920112 CGGGACACAACCACGGCA 62.920 66.667 0.00 0.00 0.00 5.69
1230 3900 2.421314 CACGACAGCCACTCCACA 59.579 61.111 0.00 0.00 0.00 4.17
1296 3966 2.512896 GCATCCCAGAAGGCCGAT 59.487 61.111 0.00 0.00 34.51 4.18
1329 3999 2.184322 GCGAGTGAGATGGCGGAA 59.816 61.111 0.00 0.00 0.00 4.30
1351 4021 4.778143 CCGCGGGGAAGACCAAGG 62.778 72.222 20.10 0.00 42.91 3.61
1561 4252 3.059982 CGAGGAGTGCCAAGGACA 58.940 61.111 0.00 0.00 36.29 4.02
1623 4326 3.435186 GCCAAGGACGCAGCCTTC 61.435 66.667 4.20 0.00 44.89 3.46
1638 4341 2.116383 CTTCGATACAGCGGAGGGT 58.884 57.895 0.00 0.00 33.25 4.34
1784 4487 2.364448 GGAGAAGGCCGAGGAGGT 60.364 66.667 0.00 0.00 43.70 3.85
1838 4542 1.962306 GGTAAAGCACCGTCGCCAA 60.962 57.895 0.00 0.00 37.63 4.52
1883 4587 1.739067 AGGTGCGAAGGCTTCAATAC 58.261 50.000 25.66 19.03 40.82 1.89
1893 4597 6.709643 CGAAGGCTTCAATACTAAGTTGATG 58.290 40.000 25.66 1.06 35.68 3.07
1897 4601 7.349598 AGGCTTCAATACTAAGTTGATGGAAT 58.650 34.615 0.00 0.00 35.68 3.01
1902 4606 5.991328 ATACTAAGTTGATGGAATGCGTG 57.009 39.130 0.00 0.00 0.00 5.34
1906 4610 3.770263 AGTTGATGGAATGCGTGATTG 57.230 42.857 0.00 0.00 0.00 2.67
2075 4779 4.329545 GGGGCGAGGCACTGAACA 62.330 66.667 0.00 0.00 41.55 3.18
2187 4891 4.021925 GAAGGCGGCACTGAGGGT 62.022 66.667 13.08 0.00 0.00 4.34
2194 4898 2.711922 GGCACTGAGGGTCGACGAT 61.712 63.158 9.92 0.00 0.00 3.73
2438 5146 3.915536 TGCCCGGCAACTTTTTATTAAC 58.084 40.909 10.50 0.00 34.76 2.01
2439 5147 3.574826 TGCCCGGCAACTTTTTATTAACT 59.425 39.130 10.50 0.00 34.76 2.24
2440 5148 4.765856 TGCCCGGCAACTTTTTATTAACTA 59.234 37.500 10.50 0.00 34.76 2.24
2441 5149 5.106078 TGCCCGGCAACTTTTTATTAACTAG 60.106 40.000 10.50 0.00 34.76 2.57
2560 5269 1.471327 GGCTCTGCAGTCTAGCAAGAG 60.471 57.143 22.92 8.50 45.13 2.85
2571 5280 4.101741 AGTCTAGCAAGAGGTTCACAAAGT 59.898 41.667 0.00 0.00 30.45 2.66
2578 5287 5.050023 GCAAGAGGTTCACAAAGTCTAAGTC 60.050 44.000 0.00 0.00 0.00 3.01
2614 5323 8.301730 ACATGTTCAAAATAATGTTGCTCAAG 57.698 30.769 0.00 0.00 28.99 3.02
2713 5422 8.975663 TGAGCAATTCAATGATCTCTAAATCT 57.024 30.769 0.00 0.00 36.69 2.40
2720 5429 8.604640 TTCAATGATCTCTAAATCTCTGATGC 57.395 34.615 0.00 0.00 0.00 3.91
2721 5430 7.964624 TCAATGATCTCTAAATCTCTGATGCT 58.035 34.615 0.00 0.00 0.00 3.79
2722 5431 9.086758 TCAATGATCTCTAAATCTCTGATGCTA 57.913 33.333 0.00 0.00 0.00 3.49
2723 5432 9.708092 CAATGATCTCTAAATCTCTGATGCTAA 57.292 33.333 0.00 0.00 0.00 3.09
2726 5435 9.708092 TGATCTCTAAATCTCTGATGCTAATTG 57.292 33.333 0.00 0.00 0.00 2.32
2727 5436 9.709495 GATCTCTAAATCTCTGATGCTAATTGT 57.291 33.333 0.00 0.00 0.00 2.71
2728 5437 8.883954 TCTCTAAATCTCTGATGCTAATTGTG 57.116 34.615 0.00 0.00 0.00 3.33
2729 5438 7.440556 TCTCTAAATCTCTGATGCTAATTGTGC 59.559 37.037 0.00 0.00 0.00 4.57
2730 5439 7.278135 TCTAAATCTCTGATGCTAATTGTGCT 58.722 34.615 6.78 0.00 0.00 4.40
2731 5440 6.770746 AAATCTCTGATGCTAATTGTGCTT 57.229 33.333 6.78 1.27 0.00 3.91
2732 5441 6.770746 AATCTCTGATGCTAATTGTGCTTT 57.229 33.333 6.78 0.00 0.00 3.51
2733 5442 6.770746 ATCTCTGATGCTAATTGTGCTTTT 57.229 33.333 6.78 0.00 0.00 2.27
2734 5443 5.946298 TCTCTGATGCTAATTGTGCTTTTG 58.054 37.500 6.78 0.29 0.00 2.44
2735 5444 5.706833 TCTCTGATGCTAATTGTGCTTTTGA 59.293 36.000 6.78 3.50 0.00 2.69
2736 5445 6.207221 TCTCTGATGCTAATTGTGCTTTTGAA 59.793 34.615 6.78 0.00 0.00 2.69
2737 5446 6.927416 TCTGATGCTAATTGTGCTTTTGAAT 58.073 32.000 6.78 0.00 0.00 2.57
2738 5447 6.809689 TCTGATGCTAATTGTGCTTTTGAATG 59.190 34.615 6.78 0.00 0.00 2.67
2739 5448 6.689554 TGATGCTAATTGTGCTTTTGAATGA 58.310 32.000 6.78 0.00 0.00 2.57
2740 5449 6.587226 TGATGCTAATTGTGCTTTTGAATGAC 59.413 34.615 6.78 0.00 0.00 3.06
2741 5450 4.916831 TGCTAATTGTGCTTTTGAATGACG 59.083 37.500 6.78 0.00 0.00 4.35
2742 5451 5.153513 GCTAATTGTGCTTTTGAATGACGA 58.846 37.500 0.00 0.00 0.00 4.20
2743 5452 5.284660 GCTAATTGTGCTTTTGAATGACGAG 59.715 40.000 0.00 0.00 0.00 4.18
2744 5453 4.836125 ATTGTGCTTTTGAATGACGAGT 57.164 36.364 0.00 0.00 0.00 4.18
2745 5454 3.607422 TGTGCTTTTGAATGACGAGTG 57.393 42.857 0.00 0.00 0.00 3.51
2746 5455 3.202097 TGTGCTTTTGAATGACGAGTGA 58.798 40.909 0.00 0.00 0.00 3.41
2747 5456 3.625313 TGTGCTTTTGAATGACGAGTGAA 59.375 39.130 0.00 0.00 0.00 3.18
2748 5457 4.214437 GTGCTTTTGAATGACGAGTGAAG 58.786 43.478 0.00 0.00 0.00 3.02
2749 5458 3.229552 GCTTTTGAATGACGAGTGAAGC 58.770 45.455 0.00 0.00 0.00 3.86
2750 5459 3.303990 GCTTTTGAATGACGAGTGAAGCA 60.304 43.478 0.00 0.00 38.41 3.91
2751 5460 3.878086 TTTGAATGACGAGTGAAGCAC 57.122 42.857 0.00 0.00 34.10 4.40
2753 5462 2.407090 TGAATGACGAGTGAAGCACTG 58.593 47.619 4.60 0.88 45.44 3.66
2754 5463 2.035832 TGAATGACGAGTGAAGCACTGA 59.964 45.455 4.60 0.00 45.44 3.41
2755 5464 2.071688 ATGACGAGTGAAGCACTGAC 57.928 50.000 4.60 0.00 45.44 3.51
2756 5465 0.317854 TGACGAGTGAAGCACTGACG 60.318 55.000 4.60 6.03 45.44 4.35
2757 5466 0.040336 GACGAGTGAAGCACTGACGA 60.040 55.000 13.31 0.00 45.44 4.20
2758 5467 0.598562 ACGAGTGAAGCACTGACGAT 59.401 50.000 13.31 0.00 45.44 3.73
2759 5468 1.810755 ACGAGTGAAGCACTGACGATA 59.189 47.619 13.31 0.00 45.44 2.92
2760 5469 2.177977 CGAGTGAAGCACTGACGATAC 58.822 52.381 4.60 0.00 45.44 2.24
2761 5470 2.159503 CGAGTGAAGCACTGACGATACT 60.160 50.000 4.60 0.00 45.44 2.12
2762 5471 3.175152 GAGTGAAGCACTGACGATACTG 58.825 50.000 4.60 0.00 45.44 2.74
2763 5472 2.094494 AGTGAAGCACTGACGATACTGG 60.094 50.000 0.00 0.00 43.63 4.00
2764 5473 2.094700 GTGAAGCACTGACGATACTGGA 60.095 50.000 0.00 0.00 0.00 3.86
2765 5474 2.094700 TGAAGCACTGACGATACTGGAC 60.095 50.000 0.00 0.00 0.00 4.02
2766 5475 1.840737 AGCACTGACGATACTGGACT 58.159 50.000 0.00 0.00 0.00 3.85
2767 5476 3.000684 AGCACTGACGATACTGGACTA 57.999 47.619 0.00 0.00 0.00 2.59
2768 5477 3.353557 AGCACTGACGATACTGGACTAA 58.646 45.455 0.00 0.00 0.00 2.24
2769 5478 3.762288 AGCACTGACGATACTGGACTAAA 59.238 43.478 0.00 0.00 0.00 1.85
2770 5479 4.402793 AGCACTGACGATACTGGACTAAAT 59.597 41.667 0.00 0.00 0.00 1.40
2771 5480 4.740695 GCACTGACGATACTGGACTAAATC 59.259 45.833 0.00 0.00 0.00 2.17
2772 5481 5.450688 GCACTGACGATACTGGACTAAATCT 60.451 44.000 0.00 0.00 0.00 2.40
2773 5482 6.202937 CACTGACGATACTGGACTAAATCTC 58.797 44.000 0.00 0.00 0.00 2.75
2774 5483 6.038825 CACTGACGATACTGGACTAAATCTCT 59.961 42.308 0.00 0.00 0.00 3.10
2775 5484 6.038825 ACTGACGATACTGGACTAAATCTCTG 59.961 42.308 0.00 0.00 0.00 3.35
2776 5485 6.120220 TGACGATACTGGACTAAATCTCTGA 58.880 40.000 0.00 0.00 0.00 3.27
2777 5486 6.773200 TGACGATACTGGACTAAATCTCTGAT 59.227 38.462 0.00 0.00 0.00 2.90
2795 5504 4.633126 TCTGATGCTAATTGTGCTTCTGAC 59.367 41.667 17.50 0.00 37.51 3.51
2976 5694 7.797038 TCACCTGAATGACATTATCAGAATG 57.203 36.000 15.75 13.34 42.48 2.67
3099 5818 1.065199 TGCTCCAAATCGAGAAGCCAT 60.065 47.619 0.00 0.00 30.97 4.40
3100 5819 2.019984 GCTCCAAATCGAGAAGCCATT 58.980 47.619 0.00 0.00 30.97 3.16
3101 5820 2.223433 GCTCCAAATCGAGAAGCCATTG 60.223 50.000 0.00 0.00 30.97 2.82
3102 5821 3.012518 CTCCAAATCGAGAAGCCATTGT 58.987 45.455 0.00 0.00 30.97 2.71
3103 5822 2.749076 TCCAAATCGAGAAGCCATTGTG 59.251 45.455 0.00 0.00 0.00 3.33
3104 5823 2.489329 CCAAATCGAGAAGCCATTGTGT 59.511 45.455 0.00 0.00 0.00 3.72
3105 5824 3.689161 CCAAATCGAGAAGCCATTGTGTA 59.311 43.478 0.00 0.00 0.00 2.90
3106 5825 4.155826 CCAAATCGAGAAGCCATTGTGTAA 59.844 41.667 0.00 0.00 0.00 2.41
3107 5826 5.335583 CCAAATCGAGAAGCCATTGTGTAAA 60.336 40.000 0.00 0.00 0.00 2.01
3108 5827 5.957842 AATCGAGAAGCCATTGTGTAAAA 57.042 34.783 0.00 0.00 0.00 1.52
3109 5828 4.742438 TCGAGAAGCCATTGTGTAAAAC 57.258 40.909 0.00 0.00 0.00 2.43
3110 5829 3.185594 TCGAGAAGCCATTGTGTAAAACG 59.814 43.478 0.00 0.00 0.00 3.60
3111 5830 3.059188 CGAGAAGCCATTGTGTAAAACGT 60.059 43.478 0.00 0.00 0.00 3.99
3112 5831 4.150980 CGAGAAGCCATTGTGTAAAACGTA 59.849 41.667 0.00 0.00 0.00 3.57
3113 5832 5.607119 AGAAGCCATTGTGTAAAACGTAG 57.393 39.130 0.00 0.00 0.00 3.51
3114 5833 4.454504 AGAAGCCATTGTGTAAAACGTAGG 59.545 41.667 0.00 0.00 0.00 3.18
3115 5834 3.746940 AGCCATTGTGTAAAACGTAGGT 58.253 40.909 0.00 0.00 0.00 3.08
3116 5835 4.139038 AGCCATTGTGTAAAACGTAGGTT 58.861 39.130 0.00 0.00 38.22 3.50
3118 5837 4.677832 GCCATTGTGTAAAACGTAGGTTTG 59.322 41.667 13.87 0.55 45.35 2.93
3119 5838 5.216648 CCATTGTGTAAAACGTAGGTTTGG 58.783 41.667 13.87 5.78 45.35 3.28
3120 5839 3.967203 TGTGTAAAACGTAGGTTTGGC 57.033 42.857 13.87 10.25 45.35 4.52
3121 5840 3.543665 TGTGTAAAACGTAGGTTTGGCT 58.456 40.909 13.87 2.11 45.35 4.75
3122 5841 3.560896 TGTGTAAAACGTAGGTTTGGCTC 59.439 43.478 13.87 10.73 45.35 4.70
3123 5842 3.560896 GTGTAAAACGTAGGTTTGGCTCA 59.439 43.478 13.87 8.39 45.35 4.26
3124 5843 4.035441 GTGTAAAACGTAGGTTTGGCTCAA 59.965 41.667 13.87 0.00 45.35 3.02
3125 5844 3.703286 AAAACGTAGGTTTGGCTCAAC 57.297 42.857 13.87 0.00 45.35 3.18
3126 5845 1.601166 AACGTAGGTTTGGCTCAACC 58.399 50.000 10.27 10.27 39.84 3.77
3127 5846 0.763035 ACGTAGGTTTGGCTCAACCT 59.237 50.000 20.85 20.85 40.22 3.50
3128 5847 1.142262 ACGTAGGTTTGGCTCAACCTT 59.858 47.619 21.84 6.54 40.22 3.50
3129 5848 1.804748 CGTAGGTTTGGCTCAACCTTC 59.195 52.381 21.84 16.99 40.22 3.46
3130 5849 2.808933 CGTAGGTTTGGCTCAACCTTCA 60.809 50.000 21.84 7.13 40.22 3.02
3131 5850 2.452600 AGGTTTGGCTCAACCTTCAA 57.547 45.000 13.97 0.00 40.22 2.69
3132 5851 2.745968 AGGTTTGGCTCAACCTTCAAA 58.254 42.857 13.97 0.00 40.22 2.69
3133 5852 2.695147 AGGTTTGGCTCAACCTTCAAAG 59.305 45.455 13.97 0.00 40.22 2.77
3154 5873 3.931578 GGAGTGGCCTATGATGACATAC 58.068 50.000 3.32 0.00 37.87 2.39
3155 5874 3.324846 GGAGTGGCCTATGATGACATACA 59.675 47.826 3.32 0.00 37.87 2.29
3156 5875 4.202357 GGAGTGGCCTATGATGACATACAA 60.202 45.833 3.32 0.00 37.87 2.41
3157 5876 4.965814 AGTGGCCTATGATGACATACAAG 58.034 43.478 3.32 0.00 37.87 3.16
3158 5877 4.410228 AGTGGCCTATGATGACATACAAGT 59.590 41.667 3.32 0.00 37.87 3.16
3159 5878 4.752101 GTGGCCTATGATGACATACAAGTC 59.248 45.833 3.32 0.00 37.87 3.01
3160 5879 4.202357 TGGCCTATGATGACATACAAGTCC 60.202 45.833 3.32 0.00 37.73 3.85
3161 5880 4.202357 GGCCTATGATGACATACAAGTCCA 60.202 45.833 0.00 0.00 37.73 4.02
3162 5881 5.368145 GCCTATGATGACATACAAGTCCAA 58.632 41.667 0.00 0.00 37.73 3.53
3163 5882 6.000219 GCCTATGATGACATACAAGTCCAAT 59.000 40.000 0.00 0.00 37.73 3.16
3164 5883 7.161404 GCCTATGATGACATACAAGTCCAATA 58.839 38.462 0.00 0.00 37.73 1.90
3165 5884 7.118390 GCCTATGATGACATACAAGTCCAATAC 59.882 40.741 0.00 0.00 37.73 1.89
3166 5885 7.604164 CCTATGATGACATACAAGTCCAATACC 59.396 40.741 0.00 0.00 37.73 2.73
3167 5886 6.306643 TGATGACATACAAGTCCAATACCA 57.693 37.500 0.00 0.00 37.73 3.25
3168 5887 6.716284 TGATGACATACAAGTCCAATACCAA 58.284 36.000 0.00 0.00 37.73 3.67
3169 5888 7.345691 TGATGACATACAAGTCCAATACCAAT 58.654 34.615 0.00 0.00 37.73 3.16
3170 5889 8.490311 TGATGACATACAAGTCCAATACCAATA 58.510 33.333 0.00 0.00 37.73 1.90
3171 5890 9.337396 GATGACATACAAGTCCAATACCAATAA 57.663 33.333 0.00 0.00 37.73 1.40
3172 5891 8.731275 TGACATACAAGTCCAATACCAATAAG 57.269 34.615 0.00 0.00 37.73 1.73
3173 5892 7.773224 TGACATACAAGTCCAATACCAATAAGG 59.227 37.037 0.00 0.00 39.61 2.69
3174 5893 7.773690 GACATACAAGTCCAATACCAATAAGGT 59.226 37.037 0.00 0.00 42.35 3.50
3191 5910 9.273016 CCAATAAGGTATGATTTACACAGTAGG 57.727 37.037 0.00 0.00 0.00 3.18
3192 5911 9.273016 CAATAAGGTATGATTTACACAGTAGGG 57.727 37.037 0.00 0.00 0.00 3.53
3193 5912 5.291905 AGGTATGATTTACACAGTAGGGC 57.708 43.478 0.00 0.00 0.00 5.19
3194 5913 4.969359 AGGTATGATTTACACAGTAGGGCT 59.031 41.667 0.00 0.00 0.00 5.19
3195 5914 6.141083 AGGTATGATTTACACAGTAGGGCTA 58.859 40.000 0.00 0.00 0.00 3.93
3196 5915 6.041751 AGGTATGATTTACACAGTAGGGCTAC 59.958 42.308 0.00 0.00 36.35 3.58
3197 5916 5.950544 ATGATTTACACAGTAGGGCTACA 57.049 39.130 0.00 0.00 38.48 2.74
3198 5917 5.748670 TGATTTACACAGTAGGGCTACAA 57.251 39.130 0.00 0.00 38.48 2.41
3199 5918 6.308015 TGATTTACACAGTAGGGCTACAAT 57.692 37.500 0.00 0.00 38.48 2.71
3200 5919 7.426606 TGATTTACACAGTAGGGCTACAATA 57.573 36.000 0.00 0.00 38.48 1.90
3201 5920 7.270047 TGATTTACACAGTAGGGCTACAATAC 58.730 38.462 0.00 0.00 38.48 1.89
3202 5921 3.795623 ACACAGTAGGGCTACAATACG 57.204 47.619 0.00 0.00 38.48 3.06
3203 5922 3.359033 ACACAGTAGGGCTACAATACGA 58.641 45.455 0.00 0.00 38.48 3.43
3204 5923 3.765511 ACACAGTAGGGCTACAATACGAA 59.234 43.478 0.00 0.00 38.48 3.85
3205 5924 4.142227 ACACAGTAGGGCTACAATACGAAG 60.142 45.833 0.00 0.00 38.48 3.79
3206 5925 4.021916 ACAGTAGGGCTACAATACGAAGT 58.978 43.478 0.00 0.00 40.89 3.01
3207 5926 4.097589 ACAGTAGGGCTACAATACGAAGTC 59.902 45.833 0.00 0.00 39.30 3.01
3208 5927 4.338682 CAGTAGGGCTACAATACGAAGTCT 59.661 45.833 0.00 0.00 39.30 3.24
3209 5928 5.530171 CAGTAGGGCTACAATACGAAGTCTA 59.470 44.000 0.00 0.00 39.30 2.59
3210 5929 6.039047 CAGTAGGGCTACAATACGAAGTCTAA 59.961 42.308 0.00 0.00 39.30 2.10
3211 5930 5.259832 AGGGCTACAATACGAAGTCTAAC 57.740 43.478 0.00 0.00 43.93 2.34
3212 5931 4.708421 AGGGCTACAATACGAAGTCTAACA 59.292 41.667 0.00 0.00 43.93 2.41
3213 5932 4.802563 GGGCTACAATACGAAGTCTAACAC 59.197 45.833 0.00 0.00 43.93 3.32
3214 5933 4.802563 GGCTACAATACGAAGTCTAACACC 59.197 45.833 0.00 0.00 43.93 4.16
3215 5934 4.802563 GCTACAATACGAAGTCTAACACCC 59.197 45.833 0.00 0.00 43.93 4.61
3216 5935 5.393896 GCTACAATACGAAGTCTAACACCCT 60.394 44.000 0.00 0.00 43.93 4.34
3217 5936 5.069501 ACAATACGAAGTCTAACACCCTC 57.930 43.478 0.00 0.00 43.93 4.30
3218 5937 4.525487 ACAATACGAAGTCTAACACCCTCA 59.475 41.667 0.00 0.00 43.93 3.86
3219 5938 4.715527 ATACGAAGTCTAACACCCTCAC 57.284 45.455 0.00 0.00 43.93 3.51
3220 5939 2.595238 ACGAAGTCTAACACCCTCACT 58.405 47.619 0.00 0.00 29.74 3.41
3221 5940 2.557490 ACGAAGTCTAACACCCTCACTC 59.443 50.000 0.00 0.00 29.74 3.51
3222 5941 2.557056 CGAAGTCTAACACCCTCACTCA 59.443 50.000 0.00 0.00 0.00 3.41
3223 5942 3.005472 CGAAGTCTAACACCCTCACTCAA 59.995 47.826 0.00 0.00 0.00 3.02
3224 5943 4.322049 CGAAGTCTAACACCCTCACTCAAT 60.322 45.833 0.00 0.00 0.00 2.57
3225 5944 4.810191 AGTCTAACACCCTCACTCAATC 57.190 45.455 0.00 0.00 0.00 2.67
3226 5945 4.421131 AGTCTAACACCCTCACTCAATCT 58.579 43.478 0.00 0.00 0.00 2.40
3227 5946 4.464597 AGTCTAACACCCTCACTCAATCTC 59.535 45.833 0.00 0.00 0.00 2.75
3228 5947 4.220821 GTCTAACACCCTCACTCAATCTCA 59.779 45.833 0.00 0.00 0.00 3.27
3229 5948 4.838423 TCTAACACCCTCACTCAATCTCAA 59.162 41.667 0.00 0.00 0.00 3.02
3230 5949 3.409026 ACACCCTCACTCAATCTCAAC 57.591 47.619 0.00 0.00 0.00 3.18
3231 5950 2.975489 ACACCCTCACTCAATCTCAACT 59.025 45.455 0.00 0.00 0.00 3.16
3232 5951 3.007398 ACACCCTCACTCAATCTCAACTC 59.993 47.826 0.00 0.00 0.00 3.01
3233 5952 3.007290 CACCCTCACTCAATCTCAACTCA 59.993 47.826 0.00 0.00 0.00 3.41
3234 5953 3.007398 ACCCTCACTCAATCTCAACTCAC 59.993 47.826 0.00 0.00 0.00 3.51
3235 5954 3.260380 CCCTCACTCAATCTCAACTCACT 59.740 47.826 0.00 0.00 0.00 3.41
3236 5955 4.493547 CCTCACTCAATCTCAACTCACTC 58.506 47.826 0.00 0.00 0.00 3.51
3237 5956 4.493547 CTCACTCAATCTCAACTCACTCC 58.506 47.826 0.00 0.00 0.00 3.85
3238 5957 4.155709 TCACTCAATCTCAACTCACTCCT 58.844 43.478 0.00 0.00 0.00 3.69
3239 5958 4.021632 TCACTCAATCTCAACTCACTCCTG 60.022 45.833 0.00 0.00 0.00 3.86
3240 5959 4.021632 CACTCAATCTCAACTCACTCCTGA 60.022 45.833 0.00 0.00 0.00 3.86
3241 5960 4.590647 ACTCAATCTCAACTCACTCCTGAA 59.409 41.667 0.00 0.00 0.00 3.02
3242 5961 5.144692 TCAATCTCAACTCACTCCTGAAG 57.855 43.478 0.00 0.00 0.00 3.02
3243 5962 4.590647 TCAATCTCAACTCACTCCTGAAGT 59.409 41.667 0.00 0.00 39.44 3.01
3244 5963 5.775195 TCAATCTCAACTCACTCCTGAAGTA 59.225 40.000 0.00 0.00 36.07 2.24
3245 5964 6.438741 TCAATCTCAACTCACTCCTGAAGTAT 59.561 38.462 0.00 0.00 36.07 2.12
3246 5965 5.906113 TCTCAACTCACTCCTGAAGTATC 57.094 43.478 0.00 0.00 36.07 2.24
3247 5966 5.575157 TCTCAACTCACTCCTGAAGTATCT 58.425 41.667 0.00 0.00 36.07 1.98
3248 5967 6.722328 TCTCAACTCACTCCTGAAGTATCTA 58.278 40.000 0.00 0.00 36.07 1.98
3249 5968 6.826231 TCTCAACTCACTCCTGAAGTATCTAG 59.174 42.308 0.00 0.00 36.07 2.43
3250 5969 5.888724 TCAACTCACTCCTGAAGTATCTAGG 59.111 44.000 0.00 0.00 36.07 3.02
3251 5970 5.718801 ACTCACTCCTGAAGTATCTAGGA 57.281 43.478 0.00 0.00 36.07 2.94
3257 5976 5.467668 TCCTGAAGTATCTAGGAGGTTGA 57.532 43.478 0.00 0.00 35.76 3.18
3258 5977 5.450453 TCCTGAAGTATCTAGGAGGTTGAG 58.550 45.833 0.00 0.00 35.76 3.02
3259 5978 5.193930 TCCTGAAGTATCTAGGAGGTTGAGA 59.806 44.000 0.00 0.00 35.76 3.27
3260 5979 6.074648 CCTGAAGTATCTAGGAGGTTGAGAT 58.925 44.000 0.00 0.00 33.33 2.75
3261 5980 6.553100 CCTGAAGTATCTAGGAGGTTGAGATT 59.447 42.308 0.00 0.00 33.33 2.40
3262 5981 7.353414 TGAAGTATCTAGGAGGTTGAGATTG 57.647 40.000 0.00 0.00 32.27 2.67
3263 5982 5.799827 AGTATCTAGGAGGTTGAGATTGC 57.200 43.478 0.00 0.00 32.27 3.56
3264 5983 3.742433 ATCTAGGAGGTTGAGATTGCG 57.258 47.619 0.00 0.00 0.00 4.85
3265 5984 1.137086 TCTAGGAGGTTGAGATTGCGC 59.863 52.381 0.00 0.00 0.00 6.09
3266 5985 0.178068 TAGGAGGTTGAGATTGCGCC 59.822 55.000 4.18 0.00 0.00 6.53
3267 5986 1.078143 GGAGGTTGAGATTGCGCCT 60.078 57.895 4.18 0.00 0.00 5.52
3268 5987 0.178068 GGAGGTTGAGATTGCGCCTA 59.822 55.000 4.18 0.00 0.00 3.93
3269 5988 1.291132 GAGGTTGAGATTGCGCCTAC 58.709 55.000 4.18 0.00 0.00 3.18
3270 5989 0.613260 AGGTTGAGATTGCGCCTACA 59.387 50.000 4.18 0.00 0.00 2.74
3271 5990 1.009829 GGTTGAGATTGCGCCTACAG 58.990 55.000 4.18 0.00 0.00 2.74
3272 5991 1.405526 GGTTGAGATTGCGCCTACAGA 60.406 52.381 4.18 0.00 0.00 3.41
3273 5992 1.661112 GTTGAGATTGCGCCTACAGAC 59.339 52.381 4.18 0.00 0.00 3.51
3274 5993 0.175760 TGAGATTGCGCCTACAGACC 59.824 55.000 4.18 0.00 0.00 3.85
3275 5994 0.461961 GAGATTGCGCCTACAGACCT 59.538 55.000 4.18 0.00 0.00 3.85
3276 5995 0.461961 AGATTGCGCCTACAGACCTC 59.538 55.000 4.18 0.00 0.00 3.85
3277 5996 0.175760 GATTGCGCCTACAGACCTCA 59.824 55.000 4.18 0.00 0.00 3.86
3278 5997 0.613260 ATTGCGCCTACAGACCTCAA 59.387 50.000 4.18 0.00 0.00 3.02
3279 5998 0.394938 TTGCGCCTACAGACCTCAAA 59.605 50.000 4.18 0.00 0.00 2.69
3280 5999 0.320421 TGCGCCTACAGACCTCAAAC 60.320 55.000 4.18 0.00 0.00 2.93
3281 6000 0.320421 GCGCCTACAGACCTCAAACA 60.320 55.000 0.00 0.00 0.00 2.83
3282 6001 1.676014 GCGCCTACAGACCTCAAACAT 60.676 52.381 0.00 0.00 0.00 2.71
3283 6002 2.002586 CGCCTACAGACCTCAAACATG 58.997 52.381 0.00 0.00 0.00 3.21
3284 6003 2.359900 GCCTACAGACCTCAAACATGG 58.640 52.381 0.00 0.00 0.00 3.66
3285 6004 2.941415 GCCTACAGACCTCAAACATGGG 60.941 54.545 0.00 0.00 0.00 4.00
3286 6005 2.571653 CCTACAGACCTCAAACATGGGA 59.428 50.000 0.00 0.00 0.00 4.37
3287 6006 2.867109 ACAGACCTCAAACATGGGAG 57.133 50.000 0.00 0.85 0.00 4.30
3288 6007 2.338809 ACAGACCTCAAACATGGGAGA 58.661 47.619 11.50 0.00 32.87 3.71
3289 6008 2.711009 ACAGACCTCAAACATGGGAGAA 59.289 45.455 11.50 0.00 32.87 2.87
3290 6009 3.244700 ACAGACCTCAAACATGGGAGAAG 60.245 47.826 11.50 1.20 32.87 2.85
3291 6010 2.307098 AGACCTCAAACATGGGAGAAGG 59.693 50.000 11.50 7.21 32.87 3.46
3292 6011 2.040412 GACCTCAAACATGGGAGAAGGT 59.960 50.000 11.50 9.90 32.87 3.50
3293 6012 3.256704 ACCTCAAACATGGGAGAAGGTA 58.743 45.455 11.50 0.00 32.87 3.08
3294 6013 3.264450 ACCTCAAACATGGGAGAAGGTAG 59.736 47.826 11.50 0.00 32.87 3.18
3295 6014 3.519510 CCTCAAACATGGGAGAAGGTAGA 59.480 47.826 11.50 0.00 32.87 2.59
3296 6015 4.383552 CCTCAAACATGGGAGAAGGTAGAG 60.384 50.000 11.50 0.00 32.87 2.43
3297 6016 3.519510 TCAAACATGGGAGAAGGTAGAGG 59.480 47.826 0.00 0.00 0.00 3.69
3298 6017 1.501582 ACATGGGAGAAGGTAGAGGC 58.498 55.000 0.00 0.00 0.00 4.70
3299 6018 1.008938 ACATGGGAGAAGGTAGAGGCT 59.991 52.381 0.00 0.00 0.00 4.58
3300 6019 2.122768 CATGGGAGAAGGTAGAGGCTT 58.877 52.381 0.00 0.00 0.00 4.35
3301 6020 1.573108 TGGGAGAAGGTAGAGGCTTG 58.427 55.000 0.00 0.00 0.00 4.01
3302 6021 1.078823 TGGGAGAAGGTAGAGGCTTGA 59.921 52.381 0.00 0.00 0.00 3.02
3303 6022 2.293184 TGGGAGAAGGTAGAGGCTTGAT 60.293 50.000 0.00 0.00 0.00 2.57
3304 6023 2.103941 GGGAGAAGGTAGAGGCTTGATG 59.896 54.545 0.00 0.00 0.00 3.07
3305 6024 3.034635 GGAGAAGGTAGAGGCTTGATGA 58.965 50.000 0.00 0.00 0.00 2.92
3306 6025 3.452627 GGAGAAGGTAGAGGCTTGATGAA 59.547 47.826 0.00 0.00 0.00 2.57
3307 6026 4.442753 GGAGAAGGTAGAGGCTTGATGAAG 60.443 50.000 0.00 0.00 0.00 3.02
3308 6027 4.357325 AGAAGGTAGAGGCTTGATGAAGA 58.643 43.478 0.00 0.00 0.00 2.87
3309 6028 4.968080 AGAAGGTAGAGGCTTGATGAAGAT 59.032 41.667 0.00 0.00 0.00 2.40
3310 6029 4.686191 AGGTAGAGGCTTGATGAAGATG 57.314 45.455 0.00 0.00 0.00 2.90
3311 6030 4.036518 AGGTAGAGGCTTGATGAAGATGT 58.963 43.478 0.00 0.00 0.00 3.06
3312 6031 4.100808 AGGTAGAGGCTTGATGAAGATGTC 59.899 45.833 0.00 0.00 0.00 3.06
3313 6032 3.557228 AGAGGCTTGATGAAGATGTCC 57.443 47.619 0.00 0.00 0.00 4.02
3314 6033 2.158986 AGAGGCTTGATGAAGATGTCCG 60.159 50.000 0.00 0.00 0.00 4.79
3315 6034 0.659957 GGCTTGATGAAGATGTCCGC 59.340 55.000 0.00 0.00 0.00 5.54
3316 6035 1.372582 GCTTGATGAAGATGTCCGCA 58.627 50.000 0.00 0.00 0.00 5.69
3317 6036 1.739466 GCTTGATGAAGATGTCCGCAA 59.261 47.619 0.00 0.00 0.00 4.85
3318 6037 2.223203 GCTTGATGAAGATGTCCGCAAG 60.223 50.000 0.00 0.00 38.47 4.01
3319 6038 2.768253 TGATGAAGATGTCCGCAAGT 57.232 45.000 0.00 0.00 0.00 3.16
3320 6039 3.057969 TGATGAAGATGTCCGCAAGTT 57.942 42.857 0.00 0.00 0.00 2.66
3321 6040 2.743664 TGATGAAGATGTCCGCAAGTTG 59.256 45.455 0.00 0.00 0.00 3.16
3322 6041 2.542020 TGAAGATGTCCGCAAGTTGA 57.458 45.000 7.16 0.00 0.00 3.18
3323 6042 3.057969 TGAAGATGTCCGCAAGTTGAT 57.942 42.857 7.16 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 7.595502 CAGAGATTCGTGTGGGTATATAGTTTC 59.404 40.741 0.00 0.00 0.00 2.78
141 142 4.830600 TGCAGAGATTCGTGTGGGTATATA 59.169 41.667 0.00 0.00 0.00 0.86
214 215 6.719370 TGGAAGGAGTATTGTTAAAGCACATT 59.281 34.615 0.00 0.00 0.00 2.71
426 427 8.872845 AGTCAAAATCAAGCTTTGTAAACTTTG 58.127 29.630 0.00 0.88 35.65 2.77
467 468 7.488150 GCACTCCTTCCCTTTTTATTTAATTCG 59.512 37.037 0.00 0.00 0.00 3.34
469 470 8.314021 CAGCACTCCTTCCCTTTTTATTTAATT 58.686 33.333 0.00 0.00 0.00 1.40
480 481 2.553247 GCTAAACAGCACTCCTTCCCTT 60.553 50.000 0.00 0.00 34.41 3.95
482 483 1.271379 TGCTAAACAGCACTCCTTCCC 60.271 52.381 0.00 0.00 40.23 3.97
530 531 0.610509 TAAAATGCTGCCGGGCTGAA 60.611 50.000 27.54 19.26 0.00 3.02
611 3253 2.279502 CTACGCCTGCCTAAGCACGA 62.280 60.000 3.61 0.00 46.52 4.35
622 3264 2.887568 CCTTCGCAGCTACGCCTG 60.888 66.667 0.08 0.00 35.93 4.85
658 3325 5.109210 GCATGCCAAAAGGGATAAACTTAC 58.891 41.667 6.36 0.00 40.01 2.34
916 3586 0.320247 GAGCGTGGGGAGATGCTATG 60.320 60.000 0.00 0.00 38.36 2.23
974 3644 5.712917 GCTATACCTGGCTAGTTGATCTACT 59.287 44.000 14.26 14.26 0.00 2.57
975 3645 5.712917 AGCTATACCTGGCTAGTTGATCTAC 59.287 44.000 0.00 0.00 37.45 2.59
976 3646 5.893500 AGCTATACCTGGCTAGTTGATCTA 58.106 41.667 0.00 0.00 37.45 1.98
1212 3882 2.369257 CTGTGGAGTGGCTGTCGTGT 62.369 60.000 0.00 0.00 0.00 4.49
1253 3923 3.522553 CTCCCGTACTCATTGAGTTTCC 58.477 50.000 23.53 11.53 40.28 3.13
1296 3966 2.982130 GCGCTCTCCTTCCCTTCA 59.018 61.111 0.00 0.00 0.00 3.02
1335 4005 3.665675 CTCCTTGGTCTTCCCCGCG 62.666 68.421 0.00 0.00 0.00 6.46
1343 4013 1.912043 CATCCTTGGTCTCCTTGGTCT 59.088 52.381 0.00 0.00 0.00 3.85
1344 4014 1.680249 GCATCCTTGGTCTCCTTGGTC 60.680 57.143 0.00 0.00 0.00 4.02
1345 4015 0.329596 GCATCCTTGGTCTCCTTGGT 59.670 55.000 0.00 0.00 0.00 3.67
1346 4016 0.745845 CGCATCCTTGGTCTCCTTGG 60.746 60.000 0.00 0.00 0.00 3.61
1347 4017 0.745845 CCGCATCCTTGGTCTCCTTG 60.746 60.000 0.00 0.00 0.00 3.61
1348 4018 1.604378 CCGCATCCTTGGTCTCCTT 59.396 57.895 0.00 0.00 0.00 3.36
1349 4019 3.036429 GCCGCATCCTTGGTCTCCT 62.036 63.158 0.00 0.00 0.00 3.69
1350 4020 2.514824 GCCGCATCCTTGGTCTCC 60.515 66.667 0.00 0.00 0.00 3.71
1351 4021 2.514824 GGCCGCATCCTTGGTCTC 60.515 66.667 0.00 0.00 0.00 3.36
1481 4151 3.691342 CCGCGTCCTTGGTCTCCA 61.691 66.667 4.92 0.00 0.00 3.86
1623 4326 2.279517 GCACCCTCCGCTGTATCG 60.280 66.667 0.00 0.00 0.00 2.92
1638 4341 0.327924 CCACCATGTACTCCTTGGCA 59.672 55.000 0.00 0.00 41.10 4.92
1883 4587 5.163723 ACAATCACGCATTCCATCAACTTAG 60.164 40.000 0.00 0.00 0.00 2.18
1893 4597 2.987413 TCAACACAATCACGCATTCC 57.013 45.000 0.00 0.00 0.00 3.01
1897 4601 2.350676 GCAGATTCAACACAATCACGCA 60.351 45.455 0.00 0.00 35.51 5.24
1902 4606 3.425359 CGACCTGCAGATTCAACACAATC 60.425 47.826 17.39 0.00 33.53 2.67
1906 4610 1.795768 TCGACCTGCAGATTCAACAC 58.204 50.000 17.39 0.00 0.00 3.32
2187 4891 1.078637 ACGTCCTCCTCATCGTCGA 60.079 57.895 0.00 0.00 30.71 4.20
2194 4898 1.893062 CAGCATCACGTCCTCCTCA 59.107 57.895 0.00 0.00 0.00 3.86
2407 5115 4.320608 AGTTGCCGGGCATAATTTATTG 57.679 40.909 24.49 0.00 38.76 1.90
2438 5146 2.730715 GCGCGAGGCATCTTCTATCTAG 60.731 54.545 12.10 0.00 42.87 2.43
2439 5147 1.200252 GCGCGAGGCATCTTCTATCTA 59.800 52.381 12.10 0.00 42.87 1.98
2440 5148 0.038709 GCGCGAGGCATCTTCTATCT 60.039 55.000 12.10 0.00 42.87 1.98
2441 5149 1.340657 CGCGCGAGGCATCTTCTATC 61.341 60.000 28.94 0.00 43.84 2.08
2560 5269 4.365723 TCGTGACTTAGACTTTGTGAACC 58.634 43.478 0.00 0.00 0.00 3.62
2571 5280 8.032451 TGAACATGTTATGAATCGTGACTTAGA 58.968 33.333 11.95 0.00 0.00 2.10
2713 5422 5.963176 TCAAAAGCACAATTAGCATCAGA 57.037 34.783 5.04 0.00 0.00 3.27
2719 5428 5.153513 TCGTCATTCAAAAGCACAATTAGC 58.846 37.500 0.00 0.00 0.00 3.09
2720 5429 6.303970 CACTCGTCATTCAAAAGCACAATTAG 59.696 38.462 0.00 0.00 0.00 1.73
2721 5430 6.017523 TCACTCGTCATTCAAAAGCACAATTA 60.018 34.615 0.00 0.00 0.00 1.40
2722 5431 4.977963 CACTCGTCATTCAAAAGCACAATT 59.022 37.500 0.00 0.00 0.00 2.32
2723 5432 4.275689 TCACTCGTCATTCAAAAGCACAAT 59.724 37.500 0.00 0.00 0.00 2.71
2724 5433 3.625313 TCACTCGTCATTCAAAAGCACAA 59.375 39.130 0.00 0.00 0.00 3.33
2725 5434 3.202097 TCACTCGTCATTCAAAAGCACA 58.798 40.909 0.00 0.00 0.00 4.57
2726 5435 3.878086 TCACTCGTCATTCAAAAGCAC 57.122 42.857 0.00 0.00 0.00 4.40
2727 5436 3.303990 GCTTCACTCGTCATTCAAAAGCA 60.304 43.478 0.00 0.00 38.16 3.91
2728 5437 3.229552 GCTTCACTCGTCATTCAAAAGC 58.770 45.455 0.00 0.00 0.00 3.51
2729 5438 4.024556 AGTGCTTCACTCGTCATTCAAAAG 60.025 41.667 0.00 0.00 41.21 2.27
2730 5439 3.876914 AGTGCTTCACTCGTCATTCAAAA 59.123 39.130 0.00 0.00 41.21 2.44
2731 5440 3.248363 CAGTGCTTCACTCGTCATTCAAA 59.752 43.478 0.00 0.00 43.43 2.69
2732 5441 2.802247 CAGTGCTTCACTCGTCATTCAA 59.198 45.455 0.00 0.00 43.43 2.69
2733 5442 2.035832 TCAGTGCTTCACTCGTCATTCA 59.964 45.455 0.00 0.00 43.43 2.57
2734 5443 2.410053 GTCAGTGCTTCACTCGTCATTC 59.590 50.000 0.00 0.00 43.43 2.67
2735 5444 2.408050 GTCAGTGCTTCACTCGTCATT 58.592 47.619 0.00 0.00 43.43 2.57
2736 5445 1.667177 CGTCAGTGCTTCACTCGTCAT 60.667 52.381 0.00 0.00 43.43 3.06
2737 5446 0.317854 CGTCAGTGCTTCACTCGTCA 60.318 55.000 0.00 0.00 43.43 4.35
2738 5447 0.040336 TCGTCAGTGCTTCACTCGTC 60.040 55.000 0.00 0.00 43.43 4.20
2739 5448 0.598562 ATCGTCAGTGCTTCACTCGT 59.401 50.000 0.00 0.00 43.43 4.18
2740 5449 2.159503 AGTATCGTCAGTGCTTCACTCG 60.160 50.000 0.00 0.00 43.43 4.18
2741 5450 3.175152 CAGTATCGTCAGTGCTTCACTC 58.825 50.000 0.00 0.00 43.43 3.51
2742 5451 2.094494 CCAGTATCGTCAGTGCTTCACT 60.094 50.000 0.00 0.00 46.51 3.41
2743 5452 2.094700 TCCAGTATCGTCAGTGCTTCAC 60.095 50.000 0.00 0.00 34.10 3.18
2744 5453 2.094700 GTCCAGTATCGTCAGTGCTTCA 60.095 50.000 0.00 0.00 0.00 3.02
2745 5454 2.164624 AGTCCAGTATCGTCAGTGCTTC 59.835 50.000 0.00 0.00 0.00 3.86
2746 5455 2.171840 AGTCCAGTATCGTCAGTGCTT 58.828 47.619 0.00 0.00 0.00 3.91
2747 5456 1.840737 AGTCCAGTATCGTCAGTGCT 58.159 50.000 0.00 0.00 0.00 4.40
2748 5457 3.777465 TTAGTCCAGTATCGTCAGTGC 57.223 47.619 0.00 0.00 0.00 4.40
2749 5458 6.038825 AGAGATTTAGTCCAGTATCGTCAGTG 59.961 42.308 0.00 0.00 0.00 3.66
2750 5459 6.038825 CAGAGATTTAGTCCAGTATCGTCAGT 59.961 42.308 0.00 0.00 0.00 3.41
2751 5460 6.261158 TCAGAGATTTAGTCCAGTATCGTCAG 59.739 42.308 0.00 0.00 0.00 3.51
2752 5461 6.120220 TCAGAGATTTAGTCCAGTATCGTCA 58.880 40.000 0.00 0.00 0.00 4.35
2753 5462 6.621316 TCAGAGATTTAGTCCAGTATCGTC 57.379 41.667 0.00 0.00 0.00 4.20
2754 5463 6.515862 GCATCAGAGATTTAGTCCAGTATCGT 60.516 42.308 0.00 0.00 0.00 3.73
2755 5464 5.861251 GCATCAGAGATTTAGTCCAGTATCG 59.139 44.000 0.00 0.00 0.00 2.92
2756 5465 6.991938 AGCATCAGAGATTTAGTCCAGTATC 58.008 40.000 0.00 0.00 0.00 2.24
2757 5466 6.992664 AGCATCAGAGATTTAGTCCAGTAT 57.007 37.500 0.00 0.00 0.00 2.12
2758 5467 7.898014 TTAGCATCAGAGATTTAGTCCAGTA 57.102 36.000 0.00 0.00 0.00 2.74
2759 5468 6.798427 TTAGCATCAGAGATTTAGTCCAGT 57.202 37.500 0.00 0.00 0.00 4.00
2760 5469 7.714377 ACAATTAGCATCAGAGATTTAGTCCAG 59.286 37.037 0.00 0.00 0.00 3.86
2761 5470 7.496920 CACAATTAGCATCAGAGATTTAGTCCA 59.503 37.037 0.00 0.00 0.00 4.02
2762 5471 7.519649 GCACAATTAGCATCAGAGATTTAGTCC 60.520 40.741 0.00 0.00 0.00 3.85
2763 5472 7.226325 AGCACAATTAGCATCAGAGATTTAGTC 59.774 37.037 5.04 0.00 0.00 2.59
2764 5473 7.052873 AGCACAATTAGCATCAGAGATTTAGT 58.947 34.615 5.04 0.00 0.00 2.24
2765 5474 7.493743 AGCACAATTAGCATCAGAGATTTAG 57.506 36.000 5.04 0.00 0.00 1.85
2766 5475 7.772292 AGAAGCACAATTAGCATCAGAGATTTA 59.228 33.333 9.15 0.00 32.53 1.40
2767 5476 6.602406 AGAAGCACAATTAGCATCAGAGATTT 59.398 34.615 9.15 0.00 32.53 2.17
2768 5477 6.038382 CAGAAGCACAATTAGCATCAGAGATT 59.962 38.462 9.15 0.00 32.53 2.40
2769 5478 5.527951 CAGAAGCACAATTAGCATCAGAGAT 59.472 40.000 9.15 0.00 32.53 2.75
2770 5479 4.874396 CAGAAGCACAATTAGCATCAGAGA 59.126 41.667 9.15 0.00 32.53 3.10
2771 5480 4.874396 TCAGAAGCACAATTAGCATCAGAG 59.126 41.667 9.15 1.39 32.53 3.35
2772 5481 4.633126 GTCAGAAGCACAATTAGCATCAGA 59.367 41.667 9.15 4.81 32.53 3.27
2773 5482 4.634883 AGTCAGAAGCACAATTAGCATCAG 59.365 41.667 9.15 2.93 32.53 2.90
2774 5483 4.393990 CAGTCAGAAGCACAATTAGCATCA 59.606 41.667 9.15 0.00 32.53 3.07
2775 5484 4.633126 TCAGTCAGAAGCACAATTAGCATC 59.367 41.667 5.04 2.70 0.00 3.91
2776 5485 4.394300 GTCAGTCAGAAGCACAATTAGCAT 59.606 41.667 5.04 0.00 0.00 3.79
2777 5486 3.748048 GTCAGTCAGAAGCACAATTAGCA 59.252 43.478 5.04 0.00 0.00 3.49
2795 5504 3.544834 CGTCAGTGCTTCACTTTTGTCAG 60.545 47.826 0.00 0.00 42.59 3.51
3099 5818 3.946558 AGCCAAACCTACGTTTTACACAA 59.053 39.130 0.00 0.00 40.28 3.33
3100 5819 3.543665 AGCCAAACCTACGTTTTACACA 58.456 40.909 0.00 0.00 40.28 3.72
3101 5820 3.560896 TGAGCCAAACCTACGTTTTACAC 59.439 43.478 0.00 0.00 40.28 2.90
3102 5821 3.806380 TGAGCCAAACCTACGTTTTACA 58.194 40.909 0.00 0.00 40.28 2.41
3103 5822 4.530388 GTTGAGCCAAACCTACGTTTTAC 58.470 43.478 0.00 0.00 40.28 2.01
3104 5823 3.565063 GGTTGAGCCAAACCTACGTTTTA 59.435 43.478 10.25 0.00 45.25 1.52
3105 5824 2.359848 GGTTGAGCCAAACCTACGTTTT 59.640 45.455 10.25 0.00 45.25 2.43
3106 5825 1.951602 GGTTGAGCCAAACCTACGTTT 59.048 47.619 10.25 0.00 45.25 3.60
3107 5826 1.601166 GGTTGAGCCAAACCTACGTT 58.399 50.000 10.25 0.00 45.25 3.99
3108 5827 3.317449 GGTTGAGCCAAACCTACGT 57.683 52.632 10.25 0.00 45.25 3.57
3114 5833 2.693074 TCCTTTGAAGGTTGAGCCAAAC 59.307 45.455 9.48 0.00 46.54 2.93
3115 5834 2.958355 CTCCTTTGAAGGTTGAGCCAAA 59.042 45.455 9.48 0.00 46.54 3.28
3116 5835 2.091885 ACTCCTTTGAAGGTTGAGCCAA 60.092 45.455 9.48 0.00 46.54 4.52
3117 5836 1.494721 ACTCCTTTGAAGGTTGAGCCA 59.505 47.619 9.48 0.00 46.54 4.75
3118 5837 1.882623 CACTCCTTTGAAGGTTGAGCC 59.117 52.381 9.48 0.00 46.54 4.70
3119 5838 1.882623 CCACTCCTTTGAAGGTTGAGC 59.117 52.381 9.48 0.00 46.54 4.26
3120 5839 1.882623 GCCACTCCTTTGAAGGTTGAG 59.117 52.381 9.48 3.06 46.54 3.02
3121 5840 1.478654 GGCCACTCCTTTGAAGGTTGA 60.479 52.381 9.48 0.00 46.54 3.18
3122 5841 0.961753 GGCCACTCCTTTGAAGGTTG 59.038 55.000 9.48 8.04 46.54 3.77
3123 5842 0.853530 AGGCCACTCCTTTGAAGGTT 59.146 50.000 5.01 0.00 44.75 3.50
3124 5843 1.742308 TAGGCCACTCCTTTGAAGGT 58.258 50.000 5.01 0.00 44.75 3.50
3125 5844 2.239654 TCATAGGCCACTCCTTTGAAGG 59.760 50.000 5.01 3.30 45.80 3.46
3126 5845 3.634397 TCATAGGCCACTCCTTTGAAG 57.366 47.619 5.01 0.00 45.80 3.02
3129 5848 3.209410 GTCATCATAGGCCACTCCTTTG 58.791 50.000 5.01 0.00 44.75 2.77
3130 5849 2.846206 TGTCATCATAGGCCACTCCTTT 59.154 45.455 5.01 0.00 44.75 3.11
3131 5850 2.481441 TGTCATCATAGGCCACTCCTT 58.519 47.619 5.01 0.00 44.75 3.36
3133 5852 3.324846 TGTATGTCATCATAGGCCACTCC 59.675 47.826 5.01 0.00 37.23 3.85
3134 5853 4.607293 TGTATGTCATCATAGGCCACTC 57.393 45.455 5.01 0.00 37.23 3.51
3135 5854 4.410228 ACTTGTATGTCATCATAGGCCACT 59.590 41.667 5.01 0.00 37.23 4.00
3136 5855 4.708177 ACTTGTATGTCATCATAGGCCAC 58.292 43.478 5.01 0.00 37.23 5.01
3137 5856 4.202357 GGACTTGTATGTCATCATAGGCCA 60.202 45.833 5.01 0.00 36.10 5.36
3138 5857 4.202357 TGGACTTGTATGTCATCATAGGCC 60.202 45.833 0.00 0.00 36.42 5.19
3139 5858 4.960938 TGGACTTGTATGTCATCATAGGC 58.039 43.478 0.00 0.00 37.23 3.93
3140 5859 7.604164 GGTATTGGACTTGTATGTCATCATAGG 59.396 40.741 0.00 0.00 37.23 2.57
3141 5860 8.150296 TGGTATTGGACTTGTATGTCATCATAG 58.850 37.037 0.00 0.00 37.23 2.23
3142 5861 8.028652 TGGTATTGGACTTGTATGTCATCATA 57.971 34.615 0.00 0.00 38.61 2.15
3143 5862 6.899089 TGGTATTGGACTTGTATGTCATCAT 58.101 36.000 0.00 0.00 38.61 2.45
3144 5863 6.306643 TGGTATTGGACTTGTATGTCATCA 57.693 37.500 0.00 0.00 38.61 3.07
3145 5864 7.807977 ATTGGTATTGGACTTGTATGTCATC 57.192 36.000 0.00 0.00 38.61 2.92
3146 5865 9.342308 CTTATTGGTATTGGACTTGTATGTCAT 57.658 33.333 0.00 0.00 38.61 3.06
3147 5866 7.773224 CCTTATTGGTATTGGACTTGTATGTCA 59.227 37.037 0.00 0.00 38.61 3.58
3148 5867 8.154649 CCTTATTGGTATTGGACTTGTATGTC 57.845 38.462 0.00 0.00 36.31 3.06
3165 5884 9.273016 CCTACTGTGTAAATCATACCTTATTGG 57.727 37.037 0.00 0.00 42.93 3.16
3166 5885 9.273016 CCCTACTGTGTAAATCATACCTTATTG 57.727 37.037 0.00 0.00 0.00 1.90
3167 5886 7.937394 GCCCTACTGTGTAAATCATACCTTATT 59.063 37.037 0.00 0.00 0.00 1.40
3168 5887 7.292591 AGCCCTACTGTGTAAATCATACCTTAT 59.707 37.037 0.00 0.00 0.00 1.73
3169 5888 6.614087 AGCCCTACTGTGTAAATCATACCTTA 59.386 38.462 0.00 0.00 0.00 2.69
3170 5889 5.428783 AGCCCTACTGTGTAAATCATACCTT 59.571 40.000 0.00 0.00 0.00 3.50
3171 5890 4.969359 AGCCCTACTGTGTAAATCATACCT 59.031 41.667 0.00 0.00 0.00 3.08
3172 5891 5.291905 AGCCCTACTGTGTAAATCATACC 57.708 43.478 0.00 0.00 0.00 2.73
3173 5892 6.812998 TGTAGCCCTACTGTGTAAATCATAC 58.187 40.000 6.96 0.00 37.00 2.39
3174 5893 7.426606 TTGTAGCCCTACTGTGTAAATCATA 57.573 36.000 6.96 0.00 37.00 2.15
3175 5894 5.950544 TGTAGCCCTACTGTGTAAATCAT 57.049 39.130 6.96 0.00 37.00 2.45
3176 5895 5.748670 TTGTAGCCCTACTGTGTAAATCA 57.251 39.130 6.96 0.00 37.00 2.57
3177 5896 6.420008 CGTATTGTAGCCCTACTGTGTAAATC 59.580 42.308 6.96 0.00 37.00 2.17
3178 5897 6.097270 TCGTATTGTAGCCCTACTGTGTAAAT 59.903 38.462 6.96 0.88 37.00 1.40
3179 5898 5.418524 TCGTATTGTAGCCCTACTGTGTAAA 59.581 40.000 6.96 0.00 37.00 2.01
3180 5899 4.949238 TCGTATTGTAGCCCTACTGTGTAA 59.051 41.667 6.96 0.00 37.00 2.41
3181 5900 4.525996 TCGTATTGTAGCCCTACTGTGTA 58.474 43.478 6.96 0.00 37.00 2.90
3182 5901 3.359033 TCGTATTGTAGCCCTACTGTGT 58.641 45.455 6.96 0.00 37.00 3.72
3183 5902 4.142227 ACTTCGTATTGTAGCCCTACTGTG 60.142 45.833 6.96 0.00 37.00 3.66
3184 5903 4.021916 ACTTCGTATTGTAGCCCTACTGT 58.978 43.478 6.96 0.00 37.00 3.55
3185 5904 4.338682 AGACTTCGTATTGTAGCCCTACTG 59.661 45.833 6.96 0.00 37.00 2.74
3186 5905 4.534797 AGACTTCGTATTGTAGCCCTACT 58.465 43.478 6.96 0.00 37.00 2.57
3187 5906 4.915158 AGACTTCGTATTGTAGCCCTAC 57.085 45.455 0.00 0.00 36.63 3.18
3188 5907 5.887598 TGTTAGACTTCGTATTGTAGCCCTA 59.112 40.000 0.00 0.00 0.00 3.53
3189 5908 4.708421 TGTTAGACTTCGTATTGTAGCCCT 59.292 41.667 0.00 0.00 0.00 5.19
3190 5909 4.802563 GTGTTAGACTTCGTATTGTAGCCC 59.197 45.833 0.00 0.00 0.00 5.19
3191 5910 4.802563 GGTGTTAGACTTCGTATTGTAGCC 59.197 45.833 0.00 0.00 0.00 3.93
3192 5911 4.802563 GGGTGTTAGACTTCGTATTGTAGC 59.197 45.833 0.00 0.00 0.00 3.58
3193 5912 6.127814 TGAGGGTGTTAGACTTCGTATTGTAG 60.128 42.308 0.00 0.00 0.00 2.74
3194 5913 5.711506 TGAGGGTGTTAGACTTCGTATTGTA 59.288 40.000 0.00 0.00 0.00 2.41
3195 5914 4.525487 TGAGGGTGTTAGACTTCGTATTGT 59.475 41.667 0.00 0.00 0.00 2.71
3196 5915 4.863131 GTGAGGGTGTTAGACTTCGTATTG 59.137 45.833 0.00 0.00 0.00 1.90
3197 5916 4.771054 AGTGAGGGTGTTAGACTTCGTATT 59.229 41.667 0.00 0.00 0.00 1.89
3198 5917 4.342359 AGTGAGGGTGTTAGACTTCGTAT 58.658 43.478 0.00 0.00 0.00 3.06
3199 5918 3.755378 GAGTGAGGGTGTTAGACTTCGTA 59.245 47.826 0.00 0.00 0.00 3.43
3200 5919 2.557490 GAGTGAGGGTGTTAGACTTCGT 59.443 50.000 0.00 0.00 0.00 3.85
3201 5920 2.557056 TGAGTGAGGGTGTTAGACTTCG 59.443 50.000 0.00 0.00 0.00 3.79
3202 5921 4.602340 TTGAGTGAGGGTGTTAGACTTC 57.398 45.455 0.00 0.00 0.00 3.01
3203 5922 4.841246 AGATTGAGTGAGGGTGTTAGACTT 59.159 41.667 0.00 0.00 0.00 3.01
3204 5923 4.421131 AGATTGAGTGAGGGTGTTAGACT 58.579 43.478 0.00 0.00 0.00 3.24
3205 5924 4.220821 TGAGATTGAGTGAGGGTGTTAGAC 59.779 45.833 0.00 0.00 0.00 2.59
3206 5925 4.416516 TGAGATTGAGTGAGGGTGTTAGA 58.583 43.478 0.00 0.00 0.00 2.10
3207 5926 4.808414 TGAGATTGAGTGAGGGTGTTAG 57.192 45.455 0.00 0.00 0.00 2.34
3208 5927 4.593206 AGTTGAGATTGAGTGAGGGTGTTA 59.407 41.667 0.00 0.00 0.00 2.41
3209 5928 3.392616 AGTTGAGATTGAGTGAGGGTGTT 59.607 43.478 0.00 0.00 0.00 3.32
3210 5929 2.975489 AGTTGAGATTGAGTGAGGGTGT 59.025 45.455 0.00 0.00 0.00 4.16
3211 5930 3.007290 TGAGTTGAGATTGAGTGAGGGTG 59.993 47.826 0.00 0.00 0.00 4.61
3212 5931 3.007398 GTGAGTTGAGATTGAGTGAGGGT 59.993 47.826 0.00 0.00 0.00 4.34
3213 5932 3.260380 AGTGAGTTGAGATTGAGTGAGGG 59.740 47.826 0.00 0.00 0.00 4.30
3214 5933 4.493547 GAGTGAGTTGAGATTGAGTGAGG 58.506 47.826 0.00 0.00 0.00 3.86
3215 5934 4.220382 AGGAGTGAGTTGAGATTGAGTGAG 59.780 45.833 0.00 0.00 0.00 3.51
3216 5935 4.021632 CAGGAGTGAGTTGAGATTGAGTGA 60.022 45.833 0.00 0.00 0.00 3.41
3217 5936 4.021632 TCAGGAGTGAGTTGAGATTGAGTG 60.022 45.833 0.00 0.00 0.00 3.51
3218 5937 4.155709 TCAGGAGTGAGTTGAGATTGAGT 58.844 43.478 0.00 0.00 0.00 3.41
3219 5938 4.797800 TCAGGAGTGAGTTGAGATTGAG 57.202 45.455 0.00 0.00 0.00 3.02
3220 5939 4.590647 ACTTCAGGAGTGAGTTGAGATTGA 59.409 41.667 0.00 0.00 37.17 2.57
3221 5940 4.892433 ACTTCAGGAGTGAGTTGAGATTG 58.108 43.478 0.00 0.00 37.17 2.67
3222 5941 6.667414 AGATACTTCAGGAGTGAGTTGAGATT 59.333 38.462 0.00 0.00 39.48 2.40
3223 5942 6.194235 AGATACTTCAGGAGTGAGTTGAGAT 58.806 40.000 0.00 0.00 39.48 2.75
3224 5943 5.575157 AGATACTTCAGGAGTGAGTTGAGA 58.425 41.667 0.00 0.00 39.48 3.27
3225 5944 5.913137 AGATACTTCAGGAGTGAGTTGAG 57.087 43.478 0.00 0.00 39.48 3.02
3226 5945 5.888724 CCTAGATACTTCAGGAGTGAGTTGA 59.111 44.000 0.00 0.00 39.48 3.18
3227 5946 5.888724 TCCTAGATACTTCAGGAGTGAGTTG 59.111 44.000 0.00 0.00 39.48 3.16
3228 5947 6.080969 TCCTAGATACTTCAGGAGTGAGTT 57.919 41.667 0.00 0.00 39.48 3.01
3229 5948 5.690865 CTCCTAGATACTTCAGGAGTGAGT 58.309 45.833 8.42 0.00 46.98 3.41
3235 5954 5.193930 TCTCAACCTCCTAGATACTTCAGGA 59.806 44.000 0.00 0.00 36.97 3.86
3236 5955 5.450453 TCTCAACCTCCTAGATACTTCAGG 58.550 45.833 0.00 0.00 0.00 3.86
3237 5956 7.432869 CAATCTCAACCTCCTAGATACTTCAG 58.567 42.308 0.00 0.00 29.89 3.02
3238 5957 6.183360 GCAATCTCAACCTCCTAGATACTTCA 60.183 42.308 0.00 0.00 29.89 3.02
3239 5958 6.220201 GCAATCTCAACCTCCTAGATACTTC 58.780 44.000 0.00 0.00 29.89 3.01
3240 5959 5.221342 CGCAATCTCAACCTCCTAGATACTT 60.221 44.000 0.00 0.00 29.89 2.24
3241 5960 4.279671 CGCAATCTCAACCTCCTAGATACT 59.720 45.833 0.00 0.00 29.89 2.12
3242 5961 4.551388 CGCAATCTCAACCTCCTAGATAC 58.449 47.826 0.00 0.00 29.89 2.24
3243 5962 3.005897 GCGCAATCTCAACCTCCTAGATA 59.994 47.826 0.30 0.00 29.89 1.98
3244 5963 2.224161 GCGCAATCTCAACCTCCTAGAT 60.224 50.000 0.30 0.00 0.00 1.98
3245 5964 1.137086 GCGCAATCTCAACCTCCTAGA 59.863 52.381 0.30 0.00 0.00 2.43
3246 5965 1.576356 GCGCAATCTCAACCTCCTAG 58.424 55.000 0.30 0.00 0.00 3.02
3247 5966 0.178068 GGCGCAATCTCAACCTCCTA 59.822 55.000 10.83 0.00 0.00 2.94
3248 5967 1.078143 GGCGCAATCTCAACCTCCT 60.078 57.895 10.83 0.00 0.00 3.69
3249 5968 0.178068 TAGGCGCAATCTCAACCTCC 59.822 55.000 10.83 0.00 31.79 4.30
3250 5969 1.291132 GTAGGCGCAATCTCAACCTC 58.709 55.000 10.83 0.00 31.79 3.85
3251 5970 0.613260 TGTAGGCGCAATCTCAACCT 59.387 50.000 10.83 0.00 34.42 3.50
3252 5971 1.009829 CTGTAGGCGCAATCTCAACC 58.990 55.000 10.83 0.00 0.00 3.77
3253 5972 1.661112 GTCTGTAGGCGCAATCTCAAC 59.339 52.381 10.83 0.00 0.00 3.18
3254 5973 1.405526 GGTCTGTAGGCGCAATCTCAA 60.406 52.381 10.83 0.00 0.00 3.02
3255 5974 0.175760 GGTCTGTAGGCGCAATCTCA 59.824 55.000 10.83 0.00 0.00 3.27
3256 5975 0.461961 AGGTCTGTAGGCGCAATCTC 59.538 55.000 10.83 0.00 0.00 2.75
3257 5976 0.461961 GAGGTCTGTAGGCGCAATCT 59.538 55.000 10.83 0.00 0.00 2.40
3258 5977 0.175760 TGAGGTCTGTAGGCGCAATC 59.824 55.000 10.83 0.00 0.00 2.67
3259 5978 0.613260 TTGAGGTCTGTAGGCGCAAT 59.387 50.000 10.83 0.00 0.00 3.56
3260 5979 0.394938 TTTGAGGTCTGTAGGCGCAA 59.605 50.000 10.83 0.00 0.00 4.85
3261 5980 0.320421 GTTTGAGGTCTGTAGGCGCA 60.320 55.000 10.83 0.00 0.00 6.09
3262 5981 0.320421 TGTTTGAGGTCTGTAGGCGC 60.320 55.000 0.00 0.00 0.00 6.53
3263 5982 2.002586 CATGTTTGAGGTCTGTAGGCG 58.997 52.381 0.00 0.00 0.00 5.52
3264 5983 2.359900 CCATGTTTGAGGTCTGTAGGC 58.640 52.381 0.00 0.00 0.00 3.93
3265 5984 2.571653 TCCCATGTTTGAGGTCTGTAGG 59.428 50.000 0.00 0.00 0.00 3.18
3266 5985 3.515502 TCTCCCATGTTTGAGGTCTGTAG 59.484 47.826 0.00 0.00 0.00 2.74
3267 5986 3.516586 TCTCCCATGTTTGAGGTCTGTA 58.483 45.455 0.00 0.00 0.00 2.74
3268 5987 2.338809 TCTCCCATGTTTGAGGTCTGT 58.661 47.619 0.00 0.00 0.00 3.41
3269 5988 3.341823 CTTCTCCCATGTTTGAGGTCTG 58.658 50.000 0.00 0.00 0.00 3.51
3270 5989 2.307098 CCTTCTCCCATGTTTGAGGTCT 59.693 50.000 0.00 0.00 0.00 3.85
3271 5990 2.040412 ACCTTCTCCCATGTTTGAGGTC 59.960 50.000 0.00 0.00 0.00 3.85
3272 5991 2.065799 ACCTTCTCCCATGTTTGAGGT 58.934 47.619 0.00 0.00 0.00 3.85
3273 5992 2.887151 ACCTTCTCCCATGTTTGAGG 57.113 50.000 0.00 0.00 0.00 3.86
3274 5993 4.383552 CCTCTACCTTCTCCCATGTTTGAG 60.384 50.000 0.00 0.00 0.00 3.02
3275 5994 3.519510 CCTCTACCTTCTCCCATGTTTGA 59.480 47.826 0.00 0.00 0.00 2.69
3276 5995 3.878778 CCTCTACCTTCTCCCATGTTTG 58.121 50.000 0.00 0.00 0.00 2.93
3277 5996 2.239907 GCCTCTACCTTCTCCCATGTTT 59.760 50.000 0.00 0.00 0.00 2.83
3278 5997 1.840635 GCCTCTACCTTCTCCCATGTT 59.159 52.381 0.00 0.00 0.00 2.71
3279 5998 1.008938 AGCCTCTACCTTCTCCCATGT 59.991 52.381 0.00 0.00 0.00 3.21
3280 5999 1.799933 AGCCTCTACCTTCTCCCATG 58.200 55.000 0.00 0.00 0.00 3.66
3281 6000 2.122768 CAAGCCTCTACCTTCTCCCAT 58.877 52.381 0.00 0.00 0.00 4.00
3282 6001 1.078823 TCAAGCCTCTACCTTCTCCCA 59.921 52.381 0.00 0.00 0.00 4.37
3283 6002 1.867363 TCAAGCCTCTACCTTCTCCC 58.133 55.000 0.00 0.00 0.00 4.30
3284 6003 3.034635 TCATCAAGCCTCTACCTTCTCC 58.965 50.000 0.00 0.00 0.00 3.71
3285 6004 4.404073 TCTTCATCAAGCCTCTACCTTCTC 59.596 45.833 0.00 0.00 0.00 2.87
3286 6005 4.357325 TCTTCATCAAGCCTCTACCTTCT 58.643 43.478 0.00 0.00 0.00 2.85
3287 6006 4.744795 TCTTCATCAAGCCTCTACCTTC 57.255 45.455 0.00 0.00 0.00 3.46
3288 6007 4.472833 ACATCTTCATCAAGCCTCTACCTT 59.527 41.667 0.00 0.00 0.00 3.50
3289 6008 4.036518 ACATCTTCATCAAGCCTCTACCT 58.963 43.478 0.00 0.00 0.00 3.08
3290 6009 4.376146 GACATCTTCATCAAGCCTCTACC 58.624 47.826 0.00 0.00 0.00 3.18
3291 6010 4.376146 GGACATCTTCATCAAGCCTCTAC 58.624 47.826 0.00 0.00 0.00 2.59
3292 6011 3.068732 CGGACATCTTCATCAAGCCTCTA 59.931 47.826 0.00 0.00 0.00 2.43
3293 6012 2.158986 CGGACATCTTCATCAAGCCTCT 60.159 50.000 0.00 0.00 0.00 3.69
3294 6013 2.208431 CGGACATCTTCATCAAGCCTC 58.792 52.381 0.00 0.00 0.00 4.70
3295 6014 1.745141 GCGGACATCTTCATCAAGCCT 60.745 52.381 0.00 0.00 0.00 4.58
3296 6015 0.659957 GCGGACATCTTCATCAAGCC 59.340 55.000 0.00 0.00 0.00 4.35
3297 6016 1.372582 TGCGGACATCTTCATCAAGC 58.627 50.000 0.00 0.00 0.00 4.01
3298 6017 3.005554 ACTTGCGGACATCTTCATCAAG 58.994 45.455 0.00 0.00 39.30 3.02
3299 6018 3.057969 ACTTGCGGACATCTTCATCAA 57.942 42.857 0.00 0.00 0.00 2.57
3300 6019 2.743664 CAACTTGCGGACATCTTCATCA 59.256 45.455 0.00 0.00 0.00 3.07
3301 6020 3.002791 TCAACTTGCGGACATCTTCATC 58.997 45.455 0.00 0.00 0.00 2.92
3302 6021 3.057969 TCAACTTGCGGACATCTTCAT 57.942 42.857 0.00 0.00 0.00 2.57
3303 6022 2.542020 TCAACTTGCGGACATCTTCA 57.458 45.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.