Multiple sequence alignment - TraesCS3D01G189400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G189400 chr3D 100.000 4736 0 0 1766 6501 177061212 177056477 0.000000e+00 8746
1 TraesCS3D01G189400 chr3D 100.000 1456 0 0 1 1456 177062977 177061522 0.000000e+00 2689
2 TraesCS3D01G189400 chr3D 93.983 349 19 2 2561 2909 128202532 128202878 1.610000e-145 527
3 TraesCS3D01G189400 chr3D 96.970 66 1 1 3476 3540 177059442 177059377 6.890000e-20 110
4 TraesCS3D01G189400 chr3D 96.970 66 1 1 3536 3601 177059502 177059438 6.890000e-20 110
5 TraesCS3D01G189400 chr3B 96.404 1780 52 5 1766 3540 256202930 256201158 0.000000e+00 2922
6 TraesCS3D01G189400 chr3B 96.714 1613 34 6 4020 5627 256200659 256199061 0.000000e+00 2667
7 TraesCS3D01G189400 chr3B 92.546 1033 34 9 275 1284 256206674 256205662 0.000000e+00 1441
8 TraesCS3D01G189400 chr3B 96.694 484 15 1 3536 4019 256201222 256200740 0.000000e+00 804
9 TraesCS3D01G189400 chr3B 95.745 94 2 1 1289 1380 256205385 256205292 4.060000e-32 150
10 TraesCS3D01G189400 chr3A 97.463 1616 38 3 4020 5634 217822180 217820567 0.000000e+00 2754
11 TraesCS3D01G189400 chr3A 93.750 1104 33 11 380 1456 217826321 217825227 0.000000e+00 1624
12 TraesCS3D01G189400 chr3A 94.906 962 21 10 1766 2718 217825190 217824248 0.000000e+00 1480
13 TraesCS3D01G189400 chr3A 96.023 528 11 3 3023 3540 217823206 217822679 0.000000e+00 850
14 TraesCS3D01G189400 chr3A 96.888 482 15 0 3536 4017 217822744 217822263 0.000000e+00 808
15 TraesCS3D01G189400 chr3A 90.747 281 24 2 112 390 217838877 217838597 2.210000e-99 374
16 TraesCS3D01G189400 chr5B 95.260 865 32 4 5641 6501 124295656 124296515 0.000000e+00 1362
17 TraesCS3D01G189400 chr7B 93.163 863 49 6 5641 6501 19659534 19660388 0.000000e+00 1258
18 TraesCS3D01G189400 chr4A 92.000 875 53 6 5629 6501 3360434 3359575 0.000000e+00 1212
19 TraesCS3D01G189400 chr7A 91.781 876 55 11 5630 6501 112438504 112437642 0.000000e+00 1203
20 TraesCS3D01G189400 chr4B 91.754 861 65 3 5641 6501 28042537 28043391 0.000000e+00 1192
21 TraesCS3D01G189400 chr5A 93.095 811 54 2 5692 6501 554819589 554818780 0.000000e+00 1186
22 TraesCS3D01G189400 chr5A 92.848 811 56 2 5692 6501 554813076 554812267 0.000000e+00 1175
23 TraesCS3D01G189400 chr5A 91.339 866 60 6 5638 6501 554826148 554825296 0.000000e+00 1170
24 TraesCS3D01G189400 chr5A 94.556 349 17 2 2561 2909 172543059 172543405 7.420000e-149 538
25 TraesCS3D01G189400 chr6A 90.531 866 70 8 5635 6496 539192288 539193145 0.000000e+00 1134
26 TraesCS3D01G189400 chr2D 95.101 347 13 4 2561 2907 442138503 442138845 1.590000e-150 544
27 TraesCS3D01G189400 chr4D 94.334 353 17 3 2557 2909 407569437 407569088 7.420000e-149 538
28 TraesCS3D01G189400 chr4D 93.277 357 20 4 2553 2909 380191042 380190690 2.080000e-144 523
29 TraesCS3D01G189400 chr2B 94.524 347 17 2 2561 2907 168840871 168840527 9.590000e-148 534
30 TraesCS3D01G189400 chr5D 94.269 349 18 2 2561 2909 198634169 198634515 3.450000e-147 532
31 TraesCS3D01G189400 chr7D 94.000 350 18 3 2561 2909 81101439 81101786 1.610000e-145 527


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G189400 chr3D 177056477 177062977 6500 True 2913.75 8746 98.4850 1 6501 4 chr3D.!!$R1 6500
1 TraesCS3D01G189400 chr3B 256199061 256206674 7613 True 1596.80 2922 95.6206 275 5627 5 chr3B.!!$R1 5352
2 TraesCS3D01G189400 chr3A 217820567 217826321 5754 True 1503.20 2754 95.8060 380 5634 5 chr3A.!!$R2 5254
3 TraesCS3D01G189400 chr5B 124295656 124296515 859 False 1362.00 1362 95.2600 5641 6501 1 chr5B.!!$F1 860
4 TraesCS3D01G189400 chr7B 19659534 19660388 854 False 1258.00 1258 93.1630 5641 6501 1 chr7B.!!$F1 860
5 TraesCS3D01G189400 chr4A 3359575 3360434 859 True 1212.00 1212 92.0000 5629 6501 1 chr4A.!!$R1 872
6 TraesCS3D01G189400 chr7A 112437642 112438504 862 True 1203.00 1203 91.7810 5630 6501 1 chr7A.!!$R1 871
7 TraesCS3D01G189400 chr4B 28042537 28043391 854 False 1192.00 1192 91.7540 5641 6501 1 chr4B.!!$F1 860
8 TraesCS3D01G189400 chr5A 554818780 554819589 809 True 1186.00 1186 93.0950 5692 6501 1 chr5A.!!$R2 809
9 TraesCS3D01G189400 chr5A 554812267 554813076 809 True 1175.00 1175 92.8480 5692 6501 1 chr5A.!!$R1 809
10 TraesCS3D01G189400 chr5A 554825296 554826148 852 True 1170.00 1170 91.3390 5638 6501 1 chr5A.!!$R3 863
11 TraesCS3D01G189400 chr6A 539192288 539193145 857 False 1134.00 1134 90.5310 5635 6496 1 chr6A.!!$F1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.036294 AGGAACTCCCTGCTAAACGC 60.036 55.000 0.0 0.0 45.61 4.84 F
219 220 0.036294 GGAACTCCCTGCTAAACGCT 60.036 55.000 0.0 0.0 40.11 5.07 F
284 285 0.179150 TTCAAGCAAACACACGCACC 60.179 50.000 0.0 0.0 0.00 5.01 F
459 460 0.471022 TGGCTGACTGAGTGGTACCA 60.471 55.000 11.6 11.6 0.00 3.25 F
804 817 0.897621 GGCCACCATTTTCTTCCTGG 59.102 55.000 0.0 0.0 36.09 4.45 F
1971 4526 1.005394 GGCTTCGTCCGACCAAGAA 60.005 57.895 9.8 0.0 0.00 2.52 F
2754 5711 0.104462 CATCCCTCCCCCACCTCATA 60.104 60.000 0.0 0.0 0.00 2.15 F
3409 6721 2.573462 AGATATTGCCAGTGTGGTCTGT 59.427 45.455 0.0 0.0 40.46 3.41 F
4752 8145 1.388547 GTGCCAGTTTGACACCAAGA 58.611 50.000 0.0 0.0 33.23 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 4370 0.035725 TGCAGGCATGTTCTCCTCTG 60.036 55.000 0.00 0.0 0.00 3.35 R
1971 4526 3.350833 CCTGTTTGCAGCTTCTATCCTT 58.649 45.455 0.00 0.0 41.26 3.36 R
2033 4589 7.630005 AGATGATCTCAGAATTTATCCAGGT 57.370 36.000 0.00 0.0 0.00 4.00 R
2315 4871 7.252612 TCAACAACTGATAATCCAGAGGTTA 57.747 36.000 0.00 0.0 37.59 2.85 R
2460 5016 3.067040 GGGTAACGGAGATCTTCAGAGTC 59.933 52.174 0.96 0.0 37.60 3.36 R
3396 6708 1.134401 ACTTCACACAGACCACACTGG 60.134 52.381 0.00 0.0 45.02 4.00 R
4752 8145 0.904649 TCCACAATGACAGCGAGGAT 59.095 50.000 0.00 0.0 0.00 3.24 R
4758 8151 0.524862 CAAGGCTCCACAATGACAGC 59.475 55.000 0.00 0.0 0.00 4.40 R
5931 9336 1.125093 ACGACATGGTGGGTGAAGGA 61.125 55.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.497770 CGTAGGGTAAGGTGGGCG 59.502 66.667 0.00 0.00 0.00 6.13
32 33 2.905681 GTAGGGTAAGGTGGGCGG 59.094 66.667 0.00 0.00 0.00 6.13
33 34 1.686800 GTAGGGTAAGGTGGGCGGA 60.687 63.158 0.00 0.00 0.00 5.54
34 35 1.052694 GTAGGGTAAGGTGGGCGGAT 61.053 60.000 0.00 0.00 0.00 4.18
35 36 1.052124 TAGGGTAAGGTGGGCGGATG 61.052 60.000 0.00 0.00 0.00 3.51
36 37 2.516225 GGTAAGGTGGGCGGATGC 60.516 66.667 0.00 0.00 41.71 3.91
46 47 3.924507 GCGGATGCCCACTTTGAT 58.075 55.556 0.00 0.00 33.98 2.57
47 48 2.192605 GCGGATGCCCACTTTGATT 58.807 52.632 0.00 0.00 33.98 2.57
48 49 0.532115 GCGGATGCCCACTTTGATTT 59.468 50.000 0.00 0.00 33.98 2.17
49 50 1.066929 GCGGATGCCCACTTTGATTTT 60.067 47.619 0.00 0.00 33.98 1.82
50 51 2.612721 GCGGATGCCCACTTTGATTTTT 60.613 45.455 0.00 0.00 33.98 1.94
51 52 2.995258 CGGATGCCCACTTTGATTTTTG 59.005 45.455 0.00 0.00 0.00 2.44
52 53 3.337358 GGATGCCCACTTTGATTTTTGG 58.663 45.455 0.00 0.00 0.00 3.28
53 54 2.252976 TGCCCACTTTGATTTTTGGC 57.747 45.000 0.00 0.00 37.90 4.52
54 55 1.487976 TGCCCACTTTGATTTTTGGCA 59.512 42.857 0.00 0.00 44.55 4.92
55 56 2.092753 TGCCCACTTTGATTTTTGGCAA 60.093 40.909 0.00 0.00 43.85 4.52
56 57 2.948315 GCCCACTTTGATTTTTGGCAAA 59.052 40.909 8.93 8.93 37.36 3.68
57 58 3.379688 GCCCACTTTGATTTTTGGCAAAA 59.620 39.130 20.81 20.81 37.36 2.44
58 59 4.142293 GCCCACTTTGATTTTTGGCAAAAA 60.142 37.500 32.89 32.89 43.76 1.94
97 98 2.855963 GCATATGCATTGTGTTGACTGC 59.144 45.455 22.84 0.00 41.59 4.40
98 99 2.898181 TATGCATTGTGTTGACTGCG 57.102 45.000 3.54 0.00 37.44 5.18
99 100 0.953727 ATGCATTGTGTTGACTGCGT 59.046 45.000 0.00 0.00 37.44 5.24
100 101 0.737804 TGCATTGTGTTGACTGCGTT 59.262 45.000 0.00 0.00 37.44 4.84
101 102 1.268488 TGCATTGTGTTGACTGCGTTC 60.268 47.619 0.00 0.00 37.44 3.95
102 103 1.002468 GCATTGTGTTGACTGCGTTCT 60.002 47.619 0.00 0.00 0.00 3.01
103 104 2.541588 GCATTGTGTTGACTGCGTTCTT 60.542 45.455 0.00 0.00 0.00 2.52
104 105 3.694734 CATTGTGTTGACTGCGTTCTTT 58.305 40.909 0.00 0.00 0.00 2.52
105 106 4.788201 GCATTGTGTTGACTGCGTTCTTTA 60.788 41.667 0.00 0.00 0.00 1.85
106 107 4.530094 TTGTGTTGACTGCGTTCTTTAG 57.470 40.909 0.00 0.00 0.00 1.85
107 108 3.787785 TGTGTTGACTGCGTTCTTTAGA 58.212 40.909 0.00 0.00 0.00 2.10
108 109 4.185394 TGTGTTGACTGCGTTCTTTAGAA 58.815 39.130 0.00 0.00 0.00 2.10
109 110 4.814234 TGTGTTGACTGCGTTCTTTAGAAT 59.186 37.500 0.00 0.00 36.33 2.40
110 111 5.295787 TGTGTTGACTGCGTTCTTTAGAATT 59.704 36.000 0.00 0.00 36.33 2.17
111 112 5.621228 GTGTTGACTGCGTTCTTTAGAATTG 59.379 40.000 0.00 0.00 36.33 2.32
112 113 5.295787 TGTTGACTGCGTTCTTTAGAATTGT 59.704 36.000 0.00 0.00 36.33 2.71
113 114 6.480651 TGTTGACTGCGTTCTTTAGAATTGTA 59.519 34.615 0.00 0.00 36.33 2.41
114 115 7.172532 TGTTGACTGCGTTCTTTAGAATTGTAT 59.827 33.333 0.00 0.00 36.33 2.29
115 116 7.667043 TGACTGCGTTCTTTAGAATTGTATT 57.333 32.000 0.00 0.00 36.33 1.89
116 117 8.094798 TGACTGCGTTCTTTAGAATTGTATTT 57.905 30.769 0.00 0.00 36.33 1.40
117 118 8.015087 TGACTGCGTTCTTTAGAATTGTATTTG 58.985 33.333 0.00 0.00 36.33 2.32
118 119 6.801862 ACTGCGTTCTTTAGAATTGTATTTGC 59.198 34.615 0.00 0.00 36.33 3.68
119 120 6.908825 TGCGTTCTTTAGAATTGTATTTGCT 58.091 32.000 0.00 0.00 36.33 3.91
120 121 7.367285 TGCGTTCTTTAGAATTGTATTTGCTT 58.633 30.769 0.00 0.00 36.33 3.91
121 122 7.865385 TGCGTTCTTTAGAATTGTATTTGCTTT 59.135 29.630 0.00 0.00 36.33 3.51
122 123 8.155923 GCGTTCTTTAGAATTGTATTTGCTTTG 58.844 33.333 0.00 0.00 36.33 2.77
123 124 8.155923 CGTTCTTTAGAATTGTATTTGCTTTGC 58.844 33.333 0.00 0.00 36.33 3.68
124 125 9.196552 GTTCTTTAGAATTGTATTTGCTTTGCT 57.803 29.630 0.00 0.00 36.33 3.91
125 126 8.746922 TCTTTAGAATTGTATTTGCTTTGCTG 57.253 30.769 0.00 0.00 0.00 4.41
126 127 7.814107 TCTTTAGAATTGTATTTGCTTTGCTGG 59.186 33.333 0.00 0.00 0.00 4.85
127 128 4.824289 AGAATTGTATTTGCTTTGCTGGG 58.176 39.130 0.00 0.00 0.00 4.45
128 129 4.527816 AGAATTGTATTTGCTTTGCTGGGA 59.472 37.500 0.00 0.00 0.00 4.37
129 130 4.888326 ATTGTATTTGCTTTGCTGGGAA 57.112 36.364 0.00 0.00 0.00 3.97
130 131 4.679373 TTGTATTTGCTTTGCTGGGAAA 57.321 36.364 0.00 0.00 0.00 3.13
131 132 4.679373 TGTATTTGCTTTGCTGGGAAAA 57.321 36.364 0.00 0.00 0.00 2.29
132 133 4.630111 TGTATTTGCTTTGCTGGGAAAAG 58.370 39.130 0.00 0.00 37.63 2.27
133 134 2.618442 TTTGCTTTGCTGGGAAAAGG 57.382 45.000 0.90 0.00 35.57 3.11
134 135 1.786937 TTGCTTTGCTGGGAAAAGGA 58.213 45.000 0.90 0.00 35.57 3.36
135 136 1.786937 TGCTTTGCTGGGAAAAGGAA 58.213 45.000 0.90 0.00 35.57 3.36
136 137 2.328319 TGCTTTGCTGGGAAAAGGAAT 58.672 42.857 0.90 0.00 35.57 3.01
137 138 3.505386 TGCTTTGCTGGGAAAAGGAATA 58.495 40.909 0.90 0.00 35.57 1.75
138 139 3.900601 TGCTTTGCTGGGAAAAGGAATAA 59.099 39.130 0.90 0.00 35.57 1.40
139 140 4.245660 GCTTTGCTGGGAAAAGGAATAAC 58.754 43.478 0.90 0.00 35.57 1.89
140 141 4.485163 CTTTGCTGGGAAAAGGAATAACG 58.515 43.478 0.00 0.00 32.15 3.18
141 142 3.426787 TGCTGGGAAAAGGAATAACGA 57.573 42.857 0.00 0.00 0.00 3.85
142 143 3.343617 TGCTGGGAAAAGGAATAACGAG 58.656 45.455 0.00 0.00 0.00 4.18
143 144 3.008594 TGCTGGGAAAAGGAATAACGAGA 59.991 43.478 0.00 0.00 0.00 4.04
144 145 4.007659 GCTGGGAAAAGGAATAACGAGAA 58.992 43.478 0.00 0.00 0.00 2.87
145 146 4.457949 GCTGGGAAAAGGAATAACGAGAAA 59.542 41.667 0.00 0.00 0.00 2.52
146 147 5.392057 GCTGGGAAAAGGAATAACGAGAAAG 60.392 44.000 0.00 0.00 0.00 2.62
147 148 5.871834 TGGGAAAAGGAATAACGAGAAAGA 58.128 37.500 0.00 0.00 0.00 2.52
148 149 6.300703 TGGGAAAAGGAATAACGAGAAAGAA 58.699 36.000 0.00 0.00 0.00 2.52
149 150 6.773685 TGGGAAAAGGAATAACGAGAAAGAAA 59.226 34.615 0.00 0.00 0.00 2.52
150 151 7.285858 TGGGAAAAGGAATAACGAGAAAGAAAA 59.714 33.333 0.00 0.00 0.00 2.29
151 152 7.808381 GGGAAAAGGAATAACGAGAAAGAAAAG 59.192 37.037 0.00 0.00 0.00 2.27
152 153 7.808381 GGAAAAGGAATAACGAGAAAGAAAAGG 59.192 37.037 0.00 0.00 0.00 3.11
153 154 6.819397 AAGGAATAACGAGAAAGAAAAGGG 57.181 37.500 0.00 0.00 0.00 3.95
154 155 5.877491 AGGAATAACGAGAAAGAAAAGGGT 58.123 37.500 0.00 0.00 0.00 4.34
155 156 6.304624 AGGAATAACGAGAAAGAAAAGGGTT 58.695 36.000 0.00 0.00 0.00 4.11
156 157 6.430308 AGGAATAACGAGAAAGAAAAGGGTTC 59.570 38.462 0.00 0.00 0.00 3.62
157 158 6.206048 GGAATAACGAGAAAGAAAAGGGTTCA 59.794 38.462 0.00 0.00 0.00 3.18
158 159 7.094334 GGAATAACGAGAAAGAAAAGGGTTCAT 60.094 37.037 0.00 0.00 0.00 2.57
159 160 5.690997 AACGAGAAAGAAAAGGGTTCATC 57.309 39.130 0.00 0.00 0.00 2.92
160 161 3.746492 ACGAGAAAGAAAAGGGTTCATCG 59.254 43.478 0.00 0.00 32.83 3.84
161 162 3.424962 CGAGAAAGAAAAGGGTTCATCGC 60.425 47.826 0.00 0.00 0.00 4.58
162 163 2.820197 AGAAAGAAAAGGGTTCATCGCC 59.180 45.455 0.00 0.00 0.00 5.54
163 164 2.586648 AAGAAAAGGGTTCATCGCCT 57.413 45.000 0.00 0.00 0.00 5.52
164 165 2.115343 AGAAAAGGGTTCATCGCCTC 57.885 50.000 0.00 0.00 0.00 4.70
165 166 0.727398 GAAAAGGGTTCATCGCCTCG 59.273 55.000 0.00 0.00 0.00 4.63
166 167 0.036306 AAAAGGGTTCATCGCCTCGT 59.964 50.000 0.00 0.00 0.00 4.18
167 168 0.673644 AAAGGGTTCATCGCCTCGTG 60.674 55.000 0.00 0.00 0.00 4.35
168 169 3.195698 GGGTTCATCGCCTCGTGC 61.196 66.667 0.00 0.00 0.00 5.34
169 170 2.434185 GGTTCATCGCCTCGTGCA 60.434 61.111 0.00 0.00 41.33 4.57
170 171 2.740714 GGTTCATCGCCTCGTGCAC 61.741 63.158 6.82 6.82 41.33 4.57
171 172 2.027073 GTTCATCGCCTCGTGCACA 61.027 57.895 18.64 3.15 41.33 4.57
172 173 1.079197 TTCATCGCCTCGTGCACAT 60.079 52.632 18.64 0.00 41.33 3.21
173 174 1.360931 TTCATCGCCTCGTGCACATG 61.361 55.000 18.64 11.68 41.33 3.21
174 175 2.512286 ATCGCCTCGTGCACATGG 60.512 61.111 18.64 18.14 41.33 3.66
175 176 4.758251 TCGCCTCGTGCACATGGG 62.758 66.667 18.64 15.53 41.33 4.00
178 179 4.720902 CCTCGTGCACATGGGCCA 62.721 66.667 19.33 9.61 0.00 5.36
179 180 3.434319 CTCGTGCACATGGGCCAC 61.434 66.667 19.33 14.44 0.00 5.01
180 181 4.262089 TCGTGCACATGGGCCACA 62.262 61.111 19.33 0.00 0.00 4.17
181 182 3.063704 CGTGCACATGGGCCACAT 61.064 61.111 19.33 2.47 41.57 3.21
182 183 2.638354 CGTGCACATGGGCCACATT 61.638 57.895 19.33 0.00 37.84 2.71
183 184 1.311651 CGTGCACATGGGCCACATTA 61.312 55.000 19.33 0.00 37.84 1.90
184 185 1.113788 GTGCACATGGGCCACATTAT 58.886 50.000 19.33 0.00 37.84 1.28
185 186 1.481772 GTGCACATGGGCCACATTATT 59.518 47.619 19.33 0.00 37.84 1.40
186 187 2.093553 GTGCACATGGGCCACATTATTT 60.094 45.455 19.33 0.00 37.84 1.40
187 188 2.093606 TGCACATGGGCCACATTATTTG 60.094 45.455 19.33 3.42 37.84 2.32
188 189 2.168106 GCACATGGGCCACATTATTTGA 59.832 45.455 9.28 0.00 37.84 2.69
189 190 3.181463 GCACATGGGCCACATTATTTGAT 60.181 43.478 9.28 0.00 37.84 2.57
190 191 4.624015 CACATGGGCCACATTATTTGATC 58.376 43.478 9.28 0.00 37.84 2.92
191 192 4.099727 CACATGGGCCACATTATTTGATCA 59.900 41.667 9.28 0.00 37.84 2.92
192 193 4.903049 ACATGGGCCACATTATTTGATCAT 59.097 37.500 9.28 0.00 37.84 2.45
193 194 5.011329 ACATGGGCCACATTATTTGATCATC 59.989 40.000 9.28 0.00 37.84 2.92
194 195 3.569277 TGGGCCACATTATTTGATCATCG 59.431 43.478 0.00 0.00 0.00 3.84
195 196 3.057315 GGGCCACATTATTTGATCATCGG 60.057 47.826 4.39 0.00 0.00 4.18
196 197 3.568538 GCCACATTATTTGATCATCGGC 58.431 45.455 0.00 0.00 0.00 5.54
197 198 3.612479 GCCACATTATTTGATCATCGGCC 60.612 47.826 0.00 0.00 0.00 6.13
198 199 3.822735 CCACATTATTTGATCATCGGCCT 59.177 43.478 0.00 0.00 0.00 5.19
199 200 5.003160 CCACATTATTTGATCATCGGCCTA 58.997 41.667 0.00 0.00 0.00 3.93
200 201 5.122869 CCACATTATTTGATCATCGGCCTAG 59.877 44.000 0.00 0.00 0.00 3.02
201 202 5.122869 CACATTATTTGATCATCGGCCTAGG 59.877 44.000 3.67 3.67 0.00 3.02
202 203 5.013079 ACATTATTTGATCATCGGCCTAGGA 59.987 40.000 14.75 0.00 0.00 2.94
203 204 5.560722 TTATTTGATCATCGGCCTAGGAA 57.439 39.130 14.75 0.00 0.00 3.36
204 205 2.910688 TTGATCATCGGCCTAGGAAC 57.089 50.000 14.75 3.04 0.00 3.62
205 206 2.088104 TGATCATCGGCCTAGGAACT 57.912 50.000 14.75 0.00 46.37 3.01
206 207 1.964223 TGATCATCGGCCTAGGAACTC 59.036 52.381 14.75 0.00 41.75 3.01
207 208 1.273886 GATCATCGGCCTAGGAACTCC 59.726 57.143 14.75 2.57 41.75 3.85
208 209 0.759436 TCATCGGCCTAGGAACTCCC 60.759 60.000 14.75 2.14 41.75 4.30
218 219 0.036294 AGGAACTCCCTGCTAAACGC 60.036 55.000 0.00 0.00 45.61 4.84
219 220 0.036294 GGAACTCCCTGCTAAACGCT 60.036 55.000 0.00 0.00 40.11 5.07
220 221 1.610886 GGAACTCCCTGCTAAACGCTT 60.611 52.381 0.00 0.00 40.11 4.68
221 222 2.152016 GAACTCCCTGCTAAACGCTTT 58.848 47.619 0.00 0.00 40.11 3.51
222 223 1.523758 ACTCCCTGCTAAACGCTTTG 58.476 50.000 0.00 0.00 40.11 2.77
223 224 1.202770 ACTCCCTGCTAAACGCTTTGT 60.203 47.619 0.00 0.00 40.11 2.83
224 225 1.464997 CTCCCTGCTAAACGCTTTGTC 59.535 52.381 0.00 0.00 40.11 3.18
225 226 0.521735 CCCTGCTAAACGCTTTGTCC 59.478 55.000 0.00 0.00 40.11 4.02
226 227 1.234821 CCTGCTAAACGCTTTGTCCA 58.765 50.000 0.00 0.00 40.11 4.02
227 228 1.812571 CCTGCTAAACGCTTTGTCCAT 59.187 47.619 0.00 0.00 40.11 3.41
228 229 2.159517 CCTGCTAAACGCTTTGTCCATC 60.160 50.000 0.00 0.00 40.11 3.51
229 230 2.483877 CTGCTAAACGCTTTGTCCATCA 59.516 45.455 0.00 0.00 40.11 3.07
230 231 3.081061 TGCTAAACGCTTTGTCCATCAT 58.919 40.909 0.00 0.00 40.11 2.45
231 232 3.126858 TGCTAAACGCTTTGTCCATCATC 59.873 43.478 0.00 0.00 40.11 2.92
232 233 3.126858 GCTAAACGCTTTGTCCATCATCA 59.873 43.478 0.00 0.00 35.14 3.07
233 234 4.379394 GCTAAACGCTTTGTCCATCATCAA 60.379 41.667 0.00 0.00 35.14 2.57
234 235 4.582701 AAACGCTTTGTCCATCATCAAA 57.417 36.364 0.00 0.00 33.44 2.69
235 236 3.559238 ACGCTTTGTCCATCATCAAAC 57.441 42.857 0.00 0.00 31.59 2.93
236 237 2.884012 ACGCTTTGTCCATCATCAAACA 59.116 40.909 0.00 0.00 31.59 2.83
237 238 3.058016 ACGCTTTGTCCATCATCAAACAG 60.058 43.478 0.00 0.00 31.59 3.16
238 239 3.248266 GCTTTGTCCATCATCAAACAGC 58.752 45.455 0.00 0.00 31.59 4.40
239 240 3.495193 CTTTGTCCATCATCAAACAGCG 58.505 45.455 0.00 0.00 31.59 5.18
240 241 2.470983 TGTCCATCATCAAACAGCGA 57.529 45.000 0.00 0.00 0.00 4.93
241 242 2.989909 TGTCCATCATCAAACAGCGAT 58.010 42.857 0.00 0.00 0.00 4.58
242 243 3.346315 TGTCCATCATCAAACAGCGATT 58.654 40.909 0.00 0.00 0.00 3.34
243 244 3.127376 TGTCCATCATCAAACAGCGATTG 59.873 43.478 0.00 0.00 0.00 2.67
244 245 2.684374 TCCATCATCAAACAGCGATTGG 59.316 45.455 0.00 0.00 0.00 3.16
245 246 2.456989 CATCATCAAACAGCGATTGGC 58.543 47.619 0.00 0.00 44.05 4.52
254 255 3.253955 GCGATTGGCGACACAACT 58.746 55.556 0.00 0.00 44.57 3.16
255 256 2.451693 GCGATTGGCGACACAACTA 58.548 52.632 0.00 0.00 44.57 2.24
256 257 0.793861 GCGATTGGCGACACAACTAA 59.206 50.000 0.00 0.00 44.57 2.24
257 258 1.396996 GCGATTGGCGACACAACTAAT 59.603 47.619 0.00 0.00 44.57 1.73
258 259 2.159572 GCGATTGGCGACACAACTAATT 60.160 45.455 0.00 0.00 44.57 1.40
259 260 3.670203 CGATTGGCGACACAACTAATTC 58.330 45.455 0.00 0.00 44.57 2.17
260 261 3.124466 CGATTGGCGACACAACTAATTCA 59.876 43.478 0.00 0.00 44.57 2.57
261 262 4.201812 CGATTGGCGACACAACTAATTCAT 60.202 41.667 0.00 0.00 44.57 2.57
262 263 4.418013 TTGGCGACACAACTAATTCATG 57.582 40.909 0.00 0.00 42.67 3.07
263 264 2.161410 TGGCGACACAACTAATTCATGC 59.839 45.455 0.00 0.00 33.40 4.06
264 265 2.161410 GGCGACACAACTAATTCATGCA 59.839 45.455 0.00 0.00 0.00 3.96
265 266 3.181497 GGCGACACAACTAATTCATGCAT 60.181 43.478 0.00 0.00 0.00 3.96
266 267 4.414852 GCGACACAACTAATTCATGCATT 58.585 39.130 0.00 0.00 0.00 3.56
267 268 4.496895 GCGACACAACTAATTCATGCATTC 59.503 41.667 0.00 0.00 0.00 2.67
268 269 5.630061 CGACACAACTAATTCATGCATTCA 58.370 37.500 0.00 0.00 0.00 2.57
269 270 6.085573 CGACACAACTAATTCATGCATTCAA 58.914 36.000 0.00 0.00 0.00 2.69
270 271 6.249893 CGACACAACTAATTCATGCATTCAAG 59.750 38.462 0.00 0.00 0.00 3.02
271 272 5.865552 ACACAACTAATTCATGCATTCAAGC 59.134 36.000 0.00 0.00 0.00 4.01
284 285 0.179150 TTCAAGCAAACACACGCACC 60.179 50.000 0.00 0.00 0.00 5.01
294 295 3.582120 CACGCACCGGCACAAGTT 61.582 61.111 0.00 0.00 41.24 2.66
319 320 5.834204 AGTAAAGACCGCACTAATCCTAGAT 59.166 40.000 0.00 0.00 0.00 1.98
320 321 5.615925 AAAGACCGCACTAATCCTAGATT 57.384 39.130 0.00 0.00 0.00 2.40
324 325 3.243907 ACCGCACTAATCCTAGATTGAGC 60.244 47.826 0.00 1.46 0.00 4.26
330 331 6.115446 CACTAATCCTAGATTGAGCCAACAA 58.885 40.000 0.00 0.00 0.00 2.83
341 342 3.656045 CCAACAACACCGGCGGAC 61.656 66.667 35.78 0.00 0.00 4.79
373 374 2.346803 GAAGAAAGTGTGATAGCCGCA 58.653 47.619 0.00 0.00 0.00 5.69
378 379 2.401583 AGTGTGATAGCCGCAAATCA 57.598 45.000 4.73 4.73 36.98 2.57
459 460 0.471022 TGGCTGACTGAGTGGTACCA 60.471 55.000 11.60 11.60 0.00 3.25
470 471 1.134220 AGTGGTACCATGGCATTACCG 60.134 52.381 19.72 0.49 43.94 4.02
670 682 5.712917 AGACCCCGCAAAATAAAAGATTACA 59.287 36.000 0.00 0.00 0.00 2.41
804 817 0.897621 GGCCACCATTTTCTTCCTGG 59.102 55.000 0.00 0.00 36.09 4.45
864 877 1.227674 GGCTTCGCCCTCATACCTG 60.228 63.158 0.00 0.00 44.06 4.00
1098 1126 4.519437 TCCGGCATGCAGCTCTCG 62.519 66.667 21.36 12.32 44.79 4.04
1221 1249 6.532657 GGTTTGGTCTTCATATGCAATTGAAG 59.467 38.462 25.14 25.14 46.57 3.02
1287 1591 2.091541 GCACCGGGATTCAGATTTCAA 58.908 47.619 6.32 0.00 0.00 2.69
1368 1674 7.647715 AGTTTGAACCTCATTTGTTAAACATCG 59.352 33.333 0.00 0.00 30.44 3.84
1430 3985 3.654273 AGATTAATTCCCCGTCTCCAGA 58.346 45.455 0.00 0.00 0.00 3.86
1794 4349 9.379791 CCCTTTCTTTCATAATTACTTACTCGT 57.620 33.333 0.00 0.00 0.00 4.18
1815 4370 6.827641 TCGTGCTAAATTTCTATGTTGTCAC 58.172 36.000 0.00 0.00 0.00 3.67
1971 4526 1.005394 GGCTTCGTCCGACCAAGAA 60.005 57.895 9.80 0.00 0.00 2.52
2033 4589 2.627945 CCGTATCTGTTAGCTTGCCAA 58.372 47.619 0.00 0.00 0.00 4.52
2315 4871 6.897986 AGATTGAGCTCATAAAGAGATTGGT 58.102 36.000 19.04 0.00 44.50 3.67
2484 5040 3.437213 TCTGAAGATCTCCGTTACCCAA 58.563 45.455 0.00 0.00 0.00 4.12
2754 5711 0.104462 CATCCCTCCCCCACCTCATA 60.104 60.000 0.00 0.00 0.00 2.15
2958 6099 6.660521 TGACAAAGACTGCAGAATTATGGAAT 59.339 34.615 23.35 0.00 0.00 3.01
3046 6349 9.787435 ATTACAATAGAGTAACTTTCAACACCA 57.213 29.630 0.00 0.00 36.85 4.17
3118 6423 9.614792 AGAACATAACCATACTCTTAATTGGAC 57.385 33.333 0.00 0.00 33.36 4.02
3137 6442 2.814336 GACCTTCACCACCATGAAACTC 59.186 50.000 0.00 0.00 38.12 3.01
3409 6721 2.573462 AGATATTGCCAGTGTGGTCTGT 59.427 45.455 0.00 0.00 40.46 3.41
3546 6859 9.811995 TTTACTGCGTATTCAAATGAGTATAGT 57.188 29.630 0.00 0.00 0.00 2.12
3547 6860 9.811995 TTACTGCGTATTCAAATGAGTATAGTT 57.188 29.630 0.00 0.00 0.00 2.24
3548 6861 8.354011 ACTGCGTATTCAAATGAGTATAGTTC 57.646 34.615 0.00 0.00 0.00 3.01
3549 6862 8.198109 ACTGCGTATTCAAATGAGTATAGTTCT 58.802 33.333 0.00 0.00 0.00 3.01
3550 6863 8.352752 TGCGTATTCAAATGAGTATAGTTCTG 57.647 34.615 0.00 0.00 0.00 3.02
3551 6864 8.194769 TGCGTATTCAAATGAGTATAGTTCTGA 58.805 33.333 0.00 0.00 0.00 3.27
3552 6865 9.031360 GCGTATTCAAATGAGTATAGTTCTGAA 57.969 33.333 0.00 0.00 0.00 3.02
3556 6869 9.950496 ATTCAAATGAGTATAGTTCTGAACTGT 57.050 29.630 28.46 24.63 42.84 3.55
3557 6870 8.988064 TCAAATGAGTATAGTTCTGAACTGTC 57.012 34.615 28.46 19.61 42.84 3.51
3558 6871 8.585018 TCAAATGAGTATAGTTCTGAACTGTCA 58.415 33.333 28.46 23.33 42.84 3.58
3559 6872 9.376075 CAAATGAGTATAGTTCTGAACTGTCAT 57.624 33.333 28.46 24.19 42.84 3.06
3560 6873 9.950496 AAATGAGTATAGTTCTGAACTGTCATT 57.050 29.630 28.46 27.05 42.84 2.57
3561 6874 8.939201 ATGAGTATAGTTCTGAACTGTCATTG 57.061 34.615 28.46 0.00 42.84 2.82
3562 6875 8.122472 TGAGTATAGTTCTGAACTGTCATTGA 57.878 34.615 28.46 10.73 42.84 2.57
3563 6876 8.029522 TGAGTATAGTTCTGAACTGTCATTGAC 58.970 37.037 28.46 17.59 42.84 3.18
3564 6877 7.896811 AGTATAGTTCTGAACTGTCATTGACA 58.103 34.615 28.46 18.08 42.84 3.58
3565 6878 8.535335 AGTATAGTTCTGAACTGTCATTGACAT 58.465 33.333 28.46 15.09 41.94 3.06
3566 6879 9.155975 GTATAGTTCTGAACTGTCATTGACATT 57.844 33.333 28.46 11.62 41.94 2.71
3567 6880 6.949352 AGTTCTGAACTGTCATTGACATTT 57.051 33.333 21.47 19.07 41.94 2.32
3568 6881 6.732154 AGTTCTGAACTGTCATTGACATTTG 58.268 36.000 22.48 13.29 41.94 2.32
3569 6882 6.543465 AGTTCTGAACTGTCATTGACATTTGA 59.457 34.615 22.48 15.38 41.94 2.69
3570 6883 6.940831 TCTGAACTGTCATTGACATTTGAA 57.059 33.333 22.48 12.13 41.94 2.69
3571 6884 7.332213 TCTGAACTGTCATTGACATTTGAAA 57.668 32.000 22.48 3.18 41.94 2.69
3572 6885 7.770201 TCTGAACTGTCATTGACATTTGAAAA 58.230 30.769 22.48 6.94 41.94 2.29
3573 6886 8.415553 TCTGAACTGTCATTGACATTTGAAAAT 58.584 29.630 22.48 2.50 41.94 1.82
3574 6887 8.945481 TGAACTGTCATTGACATTTGAAAATT 57.055 26.923 22.48 7.80 41.94 1.82
3575 6888 8.819015 TGAACTGTCATTGACATTTGAAAATTG 58.181 29.630 22.48 9.62 41.94 2.32
3576 6889 7.718272 ACTGTCATTGACATTTGAAAATTGG 57.282 32.000 19.29 6.37 41.94 3.16
3577 6890 7.274447 ACTGTCATTGACATTTGAAAATTGGT 58.726 30.769 19.29 6.96 41.94 3.67
3578 6891 7.769970 ACTGTCATTGACATTTGAAAATTGGTT 59.230 29.630 19.29 0.00 41.94 3.67
3579 6892 8.503458 TGTCATTGACATTTGAAAATTGGTTT 57.497 26.923 15.41 0.00 37.67 3.27
3580 6893 8.954350 TGTCATTGACATTTGAAAATTGGTTTT 58.046 25.926 15.41 0.00 37.67 2.43
3581 6894 9.786105 GTCATTGACATTTGAAAATTGGTTTTT 57.214 25.926 11.93 0.00 34.99 1.94
3582 6895 9.784680 TCATTGACATTTGAAAATTGGTTTTTG 57.215 25.926 0.00 0.00 37.65 2.44
3583 6896 9.570488 CATTGACATTTGAAAATTGGTTTTTGT 57.430 25.926 0.00 0.00 37.65 2.83
3586 6899 9.442047 TGACATTTGAAAATTGGTTTTTGTACT 57.558 25.926 0.00 0.00 37.65 2.73
3587 6900 9.701355 GACATTTGAAAATTGGTTTTTGTACTG 57.299 29.630 0.00 0.00 37.65 2.74
3588 6901 8.180920 ACATTTGAAAATTGGTTTTTGTACTGC 58.819 29.630 0.00 0.00 37.65 4.40
3589 6902 5.957910 TGAAAATTGGTTTTTGTACTGCG 57.042 34.783 0.00 0.00 37.65 5.18
3590 6903 5.411781 TGAAAATTGGTTTTTGTACTGCGT 58.588 33.333 0.00 0.00 37.65 5.24
3591 6904 6.561614 TGAAAATTGGTTTTTGTACTGCGTA 58.438 32.000 0.00 0.00 37.65 4.42
3592 6905 7.203910 TGAAAATTGGTTTTTGTACTGCGTAT 58.796 30.769 0.00 0.00 37.65 3.06
3593 6906 7.707035 TGAAAATTGGTTTTTGTACTGCGTATT 59.293 29.630 0.00 0.00 37.65 1.89
3594 6907 7.631915 AAATTGGTTTTTGTACTGCGTATTC 57.368 32.000 0.00 0.00 0.00 1.75
3595 6908 5.752892 TTGGTTTTTGTACTGCGTATTCA 57.247 34.783 0.00 0.00 0.00 2.57
3596 6909 5.752892 TGGTTTTTGTACTGCGTATTCAA 57.247 34.783 0.00 0.00 0.00 2.69
3597 6910 6.132791 TGGTTTTTGTACTGCGTATTCAAA 57.867 33.333 0.00 0.00 0.00 2.69
3598 6911 6.740110 TGGTTTTTGTACTGCGTATTCAAAT 58.260 32.000 0.00 0.00 0.00 2.32
3599 6912 6.638873 TGGTTTTTGTACTGCGTATTCAAATG 59.361 34.615 0.00 0.00 0.00 2.32
3787 7100 7.112452 AGCAAGGAAAGAAAATTTGTACAGT 57.888 32.000 0.00 0.00 0.00 3.55
3875 7188 9.166173 TCTAACTGAAAACTTATCATGTGATGG 57.834 33.333 5.78 1.93 36.05 3.51
4336 7729 6.205658 ACTGTTCAATTAAAGAGAGCCTTGTC 59.794 38.462 0.00 0.00 34.79 3.18
4663 8056 8.140112 ACCCACAATTTTTAAGTATGCCATAA 57.860 30.769 0.00 0.00 0.00 1.90
4692 8085 3.085952 TGCTTGCTACTATTGGGCTTT 57.914 42.857 0.00 0.00 0.00 3.51
4752 8145 1.388547 GTGCCAGTTTGACACCAAGA 58.611 50.000 0.00 0.00 33.23 3.02
4758 8151 2.738846 CAGTTTGACACCAAGATCCTCG 59.261 50.000 0.00 0.00 33.23 4.63
4766 8159 1.556911 ACCAAGATCCTCGCTGTCATT 59.443 47.619 0.00 0.00 0.00 2.57
4767 8160 1.938577 CCAAGATCCTCGCTGTCATTG 59.061 52.381 0.00 0.00 0.00 2.82
4826 8220 5.426504 TGTTGCCTTCAAACAAATGTTGAT 58.573 33.333 0.00 0.00 38.44 2.57
4911 8305 6.295575 GGAAAACATTGATTACCCATCACCAA 60.296 38.462 0.00 0.00 41.98 3.67
5212 8607 6.752285 TGGTGATTCAGATCTTATCATCCA 57.248 37.500 18.58 19.70 32.34 3.41
5284 8679 3.371063 GTGGACTCCTCCGTCGCA 61.371 66.667 0.00 0.00 39.88 5.10
5309 8704 3.969802 GTGGCTGCCCATATGCGC 61.970 66.667 17.53 0.00 44.51 6.09
5338 8733 4.264253 CATCAGGGAATGTTGCTACTGAA 58.736 43.478 0.00 0.00 38.32 3.02
5636 9034 7.635587 CGTAAATGAATAAATGGTGCATTTTGC 59.364 33.333 0.00 0.00 40.60 3.68
5686 9087 3.617263 GTCCCTTTGTAACACGCTATGAG 59.383 47.826 0.00 0.00 0.00 2.90
5687 9088 2.936498 CCCTTTGTAACACGCTATGAGG 59.064 50.000 0.00 0.00 0.00 3.86
5688 9089 2.351726 CCTTTGTAACACGCTATGAGGC 59.648 50.000 0.00 0.00 0.00 4.70
5689 9090 2.018542 TTGTAACACGCTATGAGGCC 57.981 50.000 0.00 0.00 0.00 5.19
5709 9110 2.435586 CCTTGAGGCTCACGGCAG 60.436 66.667 24.90 15.76 44.01 4.85
5735 9137 9.964354 GGGTAGTTAGGAGGTTTATTCTTTTTA 57.036 33.333 0.00 0.00 0.00 1.52
5914 9319 2.839228 ACAGAGCTAGTCCCTTCCATT 58.161 47.619 0.00 0.00 0.00 3.16
5931 9336 5.420725 TCCATTACATCTAGCGCCATTAT 57.579 39.130 2.29 0.00 0.00 1.28
5977 9382 1.482954 CTCTGTCATCTCCTCTGGCA 58.517 55.000 0.00 0.00 0.00 4.92
5990 9395 2.559668 CCTCTGGCATCAACAACAACAT 59.440 45.455 0.00 0.00 0.00 2.71
6015 9420 0.696501 AACCTCTTACCCGCACCAAT 59.303 50.000 0.00 0.00 0.00 3.16
6192 9601 5.151454 TGGTTAATCCAGGACCAACAAATT 58.849 37.500 14.32 0.00 41.93 1.82
6298 9708 3.706594 CCTAGGGAACATGTTCTCAGCTA 59.293 47.826 34.14 19.79 42.41 3.32
6333 9743 2.746277 AACAACATCCGAGCCGCC 60.746 61.111 0.00 0.00 0.00 6.13
6398 9808 2.816958 CCACATGCGCTCGCTCTT 60.817 61.111 9.73 0.00 42.51 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.905681 GCCCACCTTACCCTACGG 59.094 66.667 0.00 0.00 0.00 4.02
14 15 2.497770 CGCCCACCTTACCCTACG 59.502 66.667 0.00 0.00 0.00 3.51
15 16 1.052694 ATCCGCCCACCTTACCCTAC 61.053 60.000 0.00 0.00 0.00 3.18
16 17 1.052124 CATCCGCCCACCTTACCCTA 61.052 60.000 0.00 0.00 0.00 3.53
17 18 2.042261 ATCCGCCCACCTTACCCT 59.958 61.111 0.00 0.00 0.00 4.34
18 19 2.192175 CATCCGCCCACCTTACCC 59.808 66.667 0.00 0.00 0.00 3.69
19 20 2.516225 GCATCCGCCCACCTTACC 60.516 66.667 0.00 0.00 0.00 2.85
29 30 0.532115 AAATCAAAGTGGGCATCCGC 59.468 50.000 0.00 0.00 43.69 5.54
30 31 2.995258 CAAAAATCAAAGTGGGCATCCG 59.005 45.455 0.00 0.00 35.24 4.18
31 32 3.337358 CCAAAAATCAAAGTGGGCATCC 58.663 45.455 0.00 0.00 0.00 3.51
32 33 2.743664 GCCAAAAATCAAAGTGGGCATC 59.256 45.455 0.00 0.00 39.66 3.91
33 34 2.106166 TGCCAAAAATCAAAGTGGGCAT 59.894 40.909 0.00 0.00 44.32 4.40
34 35 1.487976 TGCCAAAAATCAAAGTGGGCA 59.512 42.857 0.00 0.00 46.74 5.36
35 36 2.252976 TGCCAAAAATCAAAGTGGGC 57.747 45.000 0.00 0.00 40.29 5.36
36 37 5.573337 TTTTTGCCAAAAATCAAAGTGGG 57.427 34.783 11.16 0.00 35.57 4.61
76 77 2.855963 GCAGTCAACACAATGCATATGC 59.144 45.455 21.09 21.09 38.54 3.14
77 78 3.103007 CGCAGTCAACACAATGCATATG 58.897 45.455 0.00 4.30 38.60 1.78
78 79 2.749076 ACGCAGTCAACACAATGCATAT 59.251 40.909 0.00 0.00 29.74 1.78
79 80 2.150390 ACGCAGTCAACACAATGCATA 58.850 42.857 0.00 0.00 29.74 3.14
80 81 0.953727 ACGCAGTCAACACAATGCAT 59.046 45.000 0.00 0.00 29.74 3.96
81 82 0.737804 AACGCAGTCAACACAATGCA 59.262 45.000 0.00 0.00 45.00 3.96
82 83 1.002468 AGAACGCAGTCAACACAATGC 60.002 47.619 0.00 0.00 45.00 3.56
83 84 3.338818 AAGAACGCAGTCAACACAATG 57.661 42.857 0.00 0.00 45.00 2.82
84 85 4.814234 TCTAAAGAACGCAGTCAACACAAT 59.186 37.500 0.00 0.00 45.00 2.71
85 86 4.185394 TCTAAAGAACGCAGTCAACACAA 58.815 39.130 0.00 0.00 45.00 3.33
86 87 3.787785 TCTAAAGAACGCAGTCAACACA 58.212 40.909 0.00 0.00 45.00 3.72
87 88 4.789095 TTCTAAAGAACGCAGTCAACAC 57.211 40.909 0.00 0.00 45.00 3.32
88 89 5.295787 ACAATTCTAAAGAACGCAGTCAACA 59.704 36.000 0.00 0.00 45.00 3.33
89 90 5.748592 ACAATTCTAAAGAACGCAGTCAAC 58.251 37.500 0.00 0.00 45.00 3.18
90 91 7.667043 ATACAATTCTAAAGAACGCAGTCAA 57.333 32.000 0.00 0.00 45.00 3.18
91 92 7.667043 AATACAATTCTAAAGAACGCAGTCA 57.333 32.000 0.00 0.00 45.00 3.41
92 93 7.007456 GCAAATACAATTCTAAAGAACGCAGTC 59.993 37.037 0.00 0.00 45.00 3.51
94 95 7.023575 AGCAAATACAATTCTAAAGAACGCAG 58.976 34.615 0.00 0.00 36.80 5.18
95 96 6.908825 AGCAAATACAATTCTAAAGAACGCA 58.091 32.000 0.00 0.00 36.80 5.24
96 97 7.796958 AAGCAAATACAATTCTAAAGAACGC 57.203 32.000 0.00 0.00 36.80 4.84
97 98 8.155923 GCAAAGCAAATACAATTCTAAAGAACG 58.844 33.333 0.00 0.00 36.80 3.95
98 99 9.196552 AGCAAAGCAAATACAATTCTAAAGAAC 57.803 29.630 0.00 0.00 36.80 3.01
99 100 9.195411 CAGCAAAGCAAATACAATTCTAAAGAA 57.805 29.630 0.00 0.00 38.56 2.52
100 101 7.814107 CCAGCAAAGCAAATACAATTCTAAAGA 59.186 33.333 0.00 0.00 0.00 2.52
101 102 7.063780 CCCAGCAAAGCAAATACAATTCTAAAG 59.936 37.037 0.00 0.00 0.00 1.85
102 103 6.873076 CCCAGCAAAGCAAATACAATTCTAAA 59.127 34.615 0.00 0.00 0.00 1.85
103 104 6.210385 TCCCAGCAAAGCAAATACAATTCTAA 59.790 34.615 0.00 0.00 0.00 2.10
104 105 5.714333 TCCCAGCAAAGCAAATACAATTCTA 59.286 36.000 0.00 0.00 0.00 2.10
105 106 4.527816 TCCCAGCAAAGCAAATACAATTCT 59.472 37.500 0.00 0.00 0.00 2.40
106 107 4.819769 TCCCAGCAAAGCAAATACAATTC 58.180 39.130 0.00 0.00 0.00 2.17
107 108 4.888326 TCCCAGCAAAGCAAATACAATT 57.112 36.364 0.00 0.00 0.00 2.32
108 109 4.888326 TTCCCAGCAAAGCAAATACAAT 57.112 36.364 0.00 0.00 0.00 2.71
109 110 4.679373 TTTCCCAGCAAAGCAAATACAA 57.321 36.364 0.00 0.00 0.00 2.41
110 111 4.502950 CCTTTTCCCAGCAAAGCAAATACA 60.503 41.667 0.00 0.00 30.94 2.29
111 112 3.996363 CCTTTTCCCAGCAAAGCAAATAC 59.004 43.478 0.00 0.00 30.94 1.89
112 113 3.900601 TCCTTTTCCCAGCAAAGCAAATA 59.099 39.130 0.00 0.00 30.94 1.40
113 114 2.705127 TCCTTTTCCCAGCAAAGCAAAT 59.295 40.909 0.00 0.00 30.94 2.32
114 115 2.114616 TCCTTTTCCCAGCAAAGCAAA 58.885 42.857 0.00 0.00 30.94 3.68
115 116 1.786937 TCCTTTTCCCAGCAAAGCAA 58.213 45.000 0.00 0.00 30.94 3.91
116 117 1.786937 TTCCTTTTCCCAGCAAAGCA 58.213 45.000 0.00 0.00 30.94 3.91
117 118 4.245660 GTTATTCCTTTTCCCAGCAAAGC 58.754 43.478 0.00 0.00 30.94 3.51
118 119 4.217550 TCGTTATTCCTTTTCCCAGCAAAG 59.782 41.667 0.00 0.00 0.00 2.77
119 120 4.145807 TCGTTATTCCTTTTCCCAGCAAA 58.854 39.130 0.00 0.00 0.00 3.68
120 121 3.756434 CTCGTTATTCCTTTTCCCAGCAA 59.244 43.478 0.00 0.00 0.00 3.91
121 122 3.008594 TCTCGTTATTCCTTTTCCCAGCA 59.991 43.478 0.00 0.00 0.00 4.41
122 123 3.606687 TCTCGTTATTCCTTTTCCCAGC 58.393 45.455 0.00 0.00 0.00 4.85
123 124 5.938125 TCTTTCTCGTTATTCCTTTTCCCAG 59.062 40.000 0.00 0.00 0.00 4.45
124 125 5.871834 TCTTTCTCGTTATTCCTTTTCCCA 58.128 37.500 0.00 0.00 0.00 4.37
125 126 6.812879 TTCTTTCTCGTTATTCCTTTTCCC 57.187 37.500 0.00 0.00 0.00 3.97
126 127 7.808381 CCTTTTCTTTCTCGTTATTCCTTTTCC 59.192 37.037 0.00 0.00 0.00 3.13
127 128 7.808381 CCCTTTTCTTTCTCGTTATTCCTTTTC 59.192 37.037 0.00 0.00 0.00 2.29
128 129 7.287005 ACCCTTTTCTTTCTCGTTATTCCTTTT 59.713 33.333 0.00 0.00 0.00 2.27
129 130 6.776116 ACCCTTTTCTTTCTCGTTATTCCTTT 59.224 34.615 0.00 0.00 0.00 3.11
130 131 6.304624 ACCCTTTTCTTTCTCGTTATTCCTT 58.695 36.000 0.00 0.00 0.00 3.36
131 132 5.877491 ACCCTTTTCTTTCTCGTTATTCCT 58.123 37.500 0.00 0.00 0.00 3.36
132 133 6.206048 TGAACCCTTTTCTTTCTCGTTATTCC 59.794 38.462 0.00 0.00 0.00 3.01
133 134 7.198306 TGAACCCTTTTCTTTCTCGTTATTC 57.802 36.000 0.00 0.00 0.00 1.75
134 135 7.360946 CGATGAACCCTTTTCTTTCTCGTTATT 60.361 37.037 0.00 0.00 0.00 1.40
135 136 6.092259 CGATGAACCCTTTTCTTTCTCGTTAT 59.908 38.462 0.00 0.00 0.00 1.89
136 137 5.407387 CGATGAACCCTTTTCTTTCTCGTTA 59.593 40.000 0.00 0.00 0.00 3.18
137 138 4.213482 CGATGAACCCTTTTCTTTCTCGTT 59.787 41.667 0.00 0.00 0.00 3.85
138 139 3.746492 CGATGAACCCTTTTCTTTCTCGT 59.254 43.478 0.00 0.00 0.00 4.18
139 140 3.424962 GCGATGAACCCTTTTCTTTCTCG 60.425 47.826 0.00 0.00 0.00 4.04
140 141 3.119814 GGCGATGAACCCTTTTCTTTCTC 60.120 47.826 0.00 0.00 0.00 2.87
141 142 2.820197 GGCGATGAACCCTTTTCTTTCT 59.180 45.455 0.00 0.00 0.00 2.52
142 143 2.820197 AGGCGATGAACCCTTTTCTTTC 59.180 45.455 0.00 0.00 0.00 2.62
143 144 2.820197 GAGGCGATGAACCCTTTTCTTT 59.180 45.455 0.00 0.00 0.00 2.52
144 145 2.437413 GAGGCGATGAACCCTTTTCTT 58.563 47.619 0.00 0.00 0.00 2.52
145 146 1.676014 CGAGGCGATGAACCCTTTTCT 60.676 52.381 0.00 0.00 0.00 2.52
146 147 0.727398 CGAGGCGATGAACCCTTTTC 59.273 55.000 0.00 0.00 0.00 2.29
147 148 0.036306 ACGAGGCGATGAACCCTTTT 59.964 50.000 0.00 0.00 0.00 2.27
148 149 0.673644 CACGAGGCGATGAACCCTTT 60.674 55.000 0.00 0.00 0.00 3.11
149 150 1.079127 CACGAGGCGATGAACCCTT 60.079 57.895 0.00 0.00 0.00 3.95
150 151 2.579201 CACGAGGCGATGAACCCT 59.421 61.111 0.00 0.00 0.00 4.34
151 152 3.195698 GCACGAGGCGATGAACCC 61.196 66.667 0.00 0.00 0.00 4.11
161 162 4.720902 TGGCCCATGTGCACGAGG 62.721 66.667 17.83 17.83 0.00 4.63
162 163 3.434319 GTGGCCCATGTGCACGAG 61.434 66.667 13.13 6.87 0.00 4.18
163 164 3.565961 ATGTGGCCCATGTGCACGA 62.566 57.895 13.13 1.58 30.69 4.35
164 165 1.311651 TAATGTGGCCCATGTGCACG 61.312 55.000 13.13 0.00 32.82 5.34
165 166 1.113788 ATAATGTGGCCCATGTGCAC 58.886 50.000 10.75 10.75 32.82 4.57
166 167 1.863325 AATAATGTGGCCCATGTGCA 58.137 45.000 0.00 0.00 32.82 4.57
167 168 2.168106 TCAAATAATGTGGCCCATGTGC 59.832 45.455 0.00 0.00 32.82 4.57
168 169 4.099727 TGATCAAATAATGTGGCCCATGTG 59.900 41.667 0.00 1.41 32.82 3.21
169 170 4.288398 TGATCAAATAATGTGGCCCATGT 58.712 39.130 0.00 0.00 32.82 3.21
170 171 4.940905 TGATCAAATAATGTGGCCCATG 57.059 40.909 0.00 0.00 32.82 3.66
171 172 4.219070 CGATGATCAAATAATGTGGCCCAT 59.781 41.667 0.00 0.00 34.36 4.00
172 173 3.569277 CGATGATCAAATAATGTGGCCCA 59.431 43.478 0.00 0.00 0.00 5.36
173 174 3.057315 CCGATGATCAAATAATGTGGCCC 60.057 47.826 0.00 0.00 0.00 5.80
174 175 3.612479 GCCGATGATCAAATAATGTGGCC 60.612 47.826 0.00 0.00 32.75 5.36
175 176 3.568538 GCCGATGATCAAATAATGTGGC 58.431 45.455 0.00 0.95 0.00 5.01
176 177 3.822735 AGGCCGATGATCAAATAATGTGG 59.177 43.478 0.00 0.00 0.00 4.17
177 178 5.122869 CCTAGGCCGATGATCAAATAATGTG 59.877 44.000 0.00 0.00 0.00 3.21
178 179 5.013079 TCCTAGGCCGATGATCAAATAATGT 59.987 40.000 2.96 0.00 0.00 2.71
179 180 5.491070 TCCTAGGCCGATGATCAAATAATG 58.509 41.667 2.96 0.00 0.00 1.90
180 181 5.762179 TCCTAGGCCGATGATCAAATAAT 57.238 39.130 2.96 0.00 0.00 1.28
181 182 5.071788 AGTTCCTAGGCCGATGATCAAATAA 59.928 40.000 2.96 0.00 0.00 1.40
182 183 4.593206 AGTTCCTAGGCCGATGATCAAATA 59.407 41.667 2.96 0.00 0.00 1.40
183 184 3.392616 AGTTCCTAGGCCGATGATCAAAT 59.607 43.478 2.96 0.00 0.00 2.32
184 185 2.771943 AGTTCCTAGGCCGATGATCAAA 59.228 45.455 2.96 0.00 0.00 2.69
185 186 2.365617 GAGTTCCTAGGCCGATGATCAA 59.634 50.000 2.96 0.00 0.00 2.57
186 187 1.964223 GAGTTCCTAGGCCGATGATCA 59.036 52.381 2.96 0.00 0.00 2.92
187 188 1.273886 GGAGTTCCTAGGCCGATGATC 59.726 57.143 2.96 0.00 0.00 2.92
188 189 1.343069 GGAGTTCCTAGGCCGATGAT 58.657 55.000 2.96 0.00 0.00 2.45
189 190 0.759436 GGGAGTTCCTAGGCCGATGA 60.759 60.000 2.96 0.00 35.95 2.92
190 191 0.760945 AGGGAGTTCCTAGGCCGATG 60.761 60.000 2.96 0.00 45.98 3.84
191 192 0.760945 CAGGGAGTTCCTAGGCCGAT 60.761 60.000 2.96 0.00 46.12 4.18
192 193 1.381327 CAGGGAGTTCCTAGGCCGA 60.381 63.158 2.96 0.00 46.12 5.54
193 194 3.095347 GCAGGGAGTTCCTAGGCCG 62.095 68.421 2.96 0.00 46.12 6.13
194 195 0.398664 TAGCAGGGAGTTCCTAGGCC 60.399 60.000 2.96 0.00 46.12 5.19
195 196 1.497161 TTAGCAGGGAGTTCCTAGGC 58.503 55.000 2.96 0.00 46.12 3.93
196 197 2.159085 CGTTTAGCAGGGAGTTCCTAGG 60.159 54.545 0.82 0.82 46.12 3.02
197 198 2.738964 GCGTTTAGCAGGGAGTTCCTAG 60.739 54.545 0.00 0.00 46.12 3.02
198 199 1.206371 GCGTTTAGCAGGGAGTTCCTA 59.794 52.381 0.00 0.00 46.12 2.94
211 212 4.944962 TGATGATGGACAAAGCGTTTAG 57.055 40.909 0.00 0.00 0.00 1.85
212 213 5.009110 TGTTTGATGATGGACAAAGCGTTTA 59.991 36.000 0.00 0.00 36.81 2.01
213 214 4.202101 TGTTTGATGATGGACAAAGCGTTT 60.202 37.500 0.00 0.00 36.81 3.60
214 215 3.317711 TGTTTGATGATGGACAAAGCGTT 59.682 39.130 0.00 0.00 36.81 4.84
215 216 2.884012 TGTTTGATGATGGACAAAGCGT 59.116 40.909 0.00 0.00 36.81 5.07
216 217 3.495193 CTGTTTGATGATGGACAAAGCG 58.505 45.455 0.00 0.00 36.81 4.68
217 218 3.248266 GCTGTTTGATGATGGACAAAGC 58.752 45.455 0.00 0.00 36.81 3.51
218 219 3.189080 TCGCTGTTTGATGATGGACAAAG 59.811 43.478 0.00 0.00 36.81 2.77
219 220 3.145286 TCGCTGTTTGATGATGGACAAA 58.855 40.909 0.00 0.00 34.33 2.83
220 221 2.777094 TCGCTGTTTGATGATGGACAA 58.223 42.857 0.00 0.00 0.00 3.18
221 222 2.470983 TCGCTGTTTGATGATGGACA 57.529 45.000 0.00 0.00 0.00 4.02
222 223 3.488047 CCAATCGCTGTTTGATGATGGAC 60.488 47.826 0.00 0.00 29.06 4.02
223 224 2.684374 CCAATCGCTGTTTGATGATGGA 59.316 45.455 0.00 0.00 29.06 3.41
224 225 2.797087 GCCAATCGCTGTTTGATGATGG 60.797 50.000 0.00 0.00 30.30 3.51
225 226 2.456989 GCCAATCGCTGTTTGATGATG 58.543 47.619 0.00 0.00 0.00 3.07
226 227 1.064505 CGCCAATCGCTGTTTGATGAT 59.935 47.619 0.00 0.00 34.21 2.45
227 228 0.447406 CGCCAATCGCTGTTTGATGA 59.553 50.000 0.00 0.00 34.21 2.92
228 229 0.447406 TCGCCAATCGCTGTTTGATG 59.553 50.000 0.00 0.00 38.27 3.07
229 230 0.447801 GTCGCCAATCGCTGTTTGAT 59.552 50.000 0.00 0.00 38.27 2.57
230 231 0.882484 TGTCGCCAATCGCTGTTTGA 60.882 50.000 0.00 0.00 38.27 2.69
231 232 0.725784 GTGTCGCCAATCGCTGTTTG 60.726 55.000 0.00 0.00 38.27 2.93
232 233 1.163420 TGTGTCGCCAATCGCTGTTT 61.163 50.000 0.00 0.00 38.27 2.83
233 234 1.163420 TTGTGTCGCCAATCGCTGTT 61.163 50.000 0.00 0.00 38.27 3.16
234 235 1.596752 TTGTGTCGCCAATCGCTGT 60.597 52.632 0.00 0.00 38.27 4.40
235 236 1.154413 GTTGTGTCGCCAATCGCTG 60.154 57.895 0.00 0.00 38.27 5.18
236 237 0.037697 TAGTTGTGTCGCCAATCGCT 60.038 50.000 0.00 0.00 38.27 4.93
237 238 0.793861 TTAGTTGTGTCGCCAATCGC 59.206 50.000 0.00 0.00 38.27 4.58
238 239 3.124466 TGAATTAGTTGTGTCGCCAATCG 59.876 43.478 0.00 0.00 40.15 3.34
239 240 4.678509 TGAATTAGTTGTGTCGCCAATC 57.321 40.909 0.00 0.00 0.00 2.67
240 241 4.675146 GCATGAATTAGTTGTGTCGCCAAT 60.675 41.667 0.00 0.00 0.00 3.16
241 242 3.365868 GCATGAATTAGTTGTGTCGCCAA 60.366 43.478 0.00 0.00 0.00 4.52
242 243 2.161410 GCATGAATTAGTTGTGTCGCCA 59.839 45.455 0.00 0.00 0.00 5.69
243 244 2.161410 TGCATGAATTAGTTGTGTCGCC 59.839 45.455 0.00 0.00 0.00 5.54
244 245 3.469899 TGCATGAATTAGTTGTGTCGC 57.530 42.857 0.00 0.00 0.00 5.19
245 246 5.630061 TGAATGCATGAATTAGTTGTGTCG 58.370 37.500 0.00 0.00 0.00 4.35
246 247 6.034256 GCTTGAATGCATGAATTAGTTGTGTC 59.966 38.462 0.00 0.00 0.00 3.67
247 248 5.865552 GCTTGAATGCATGAATTAGTTGTGT 59.134 36.000 0.00 0.00 0.00 3.72
248 249 5.865013 TGCTTGAATGCATGAATTAGTTGTG 59.135 36.000 0.00 0.00 38.12 3.33
249 250 6.028146 TGCTTGAATGCATGAATTAGTTGT 57.972 33.333 0.00 0.00 38.12 3.32
250 251 6.954616 TTGCTTGAATGCATGAATTAGTTG 57.045 33.333 0.00 0.00 42.96 3.16
251 252 6.930164 TGTTTGCTTGAATGCATGAATTAGTT 59.070 30.769 0.00 0.00 42.96 2.24
252 253 6.366877 GTGTTTGCTTGAATGCATGAATTAGT 59.633 34.615 0.00 0.00 42.96 2.24
253 254 6.366604 TGTGTTTGCTTGAATGCATGAATTAG 59.633 34.615 0.00 0.00 42.96 1.73
254 255 6.145858 GTGTGTTTGCTTGAATGCATGAATTA 59.854 34.615 0.00 0.00 42.96 1.40
255 256 5.049954 GTGTGTTTGCTTGAATGCATGAATT 60.050 36.000 0.00 0.00 42.96 2.17
256 257 4.449743 GTGTGTTTGCTTGAATGCATGAAT 59.550 37.500 0.00 0.00 42.96 2.57
257 258 3.803231 GTGTGTTTGCTTGAATGCATGAA 59.197 39.130 0.00 0.00 42.96 2.57
258 259 3.382855 GTGTGTTTGCTTGAATGCATGA 58.617 40.909 0.00 0.00 42.96 3.07
259 260 2.154198 CGTGTGTTTGCTTGAATGCATG 59.846 45.455 0.00 0.00 42.96 4.06
260 261 2.396601 CGTGTGTTTGCTTGAATGCAT 58.603 42.857 0.00 0.00 42.96 3.96
261 262 1.837648 CGTGTGTTTGCTTGAATGCA 58.162 45.000 0.00 0.00 41.65 3.96
262 263 0.503961 GCGTGTGTTTGCTTGAATGC 59.496 50.000 0.00 0.00 0.00 3.56
263 264 1.518102 GTGCGTGTGTTTGCTTGAATG 59.482 47.619 0.00 0.00 0.00 2.67
264 265 1.535860 GGTGCGTGTGTTTGCTTGAAT 60.536 47.619 0.00 0.00 0.00 2.57
265 266 0.179150 GGTGCGTGTGTTTGCTTGAA 60.179 50.000 0.00 0.00 0.00 2.69
266 267 1.431440 GGTGCGTGTGTTTGCTTGA 59.569 52.632 0.00 0.00 0.00 3.02
267 268 1.938814 CGGTGCGTGTGTTTGCTTG 60.939 57.895 0.00 0.00 0.00 4.01
268 269 2.407210 CGGTGCGTGTGTTTGCTT 59.593 55.556 0.00 0.00 0.00 3.91
269 270 3.582120 CCGGTGCGTGTGTTTGCT 61.582 61.111 0.00 0.00 0.00 3.91
271 272 3.882013 TGCCGGTGCGTGTGTTTG 61.882 61.111 1.90 0.00 41.78 2.93
272 273 3.883180 GTGCCGGTGCGTGTGTTT 61.883 61.111 1.90 0.00 41.78 2.83
284 285 2.410730 CGGTCTTTACTAACTTGTGCCG 59.589 50.000 0.00 0.00 0.00 5.69
294 295 6.359804 TCTAGGATTAGTGCGGTCTTTACTA 58.640 40.000 0.00 0.00 0.00 1.82
319 320 2.485795 GCCGGTGTTGTTGGCTCAA 61.486 57.895 1.90 0.00 45.40 3.02
320 321 2.904866 GCCGGTGTTGTTGGCTCA 60.905 61.111 1.90 0.00 45.40 4.26
324 325 3.656045 GTCCGCCGGTGTTGTTGG 61.656 66.667 15.14 0.00 0.00 3.77
341 342 4.735132 TTCTTCGCTGTCCCGCCG 62.735 66.667 0.00 0.00 0.00 6.46
345 346 0.868406 CACACTTTCTTCGCTGTCCC 59.132 55.000 0.00 0.00 0.00 4.46
351 352 1.324736 CGGCTATCACACTTTCTTCGC 59.675 52.381 0.00 0.00 0.00 4.70
373 374 3.535561 CCTAGATCTTGTGCGGTGATTT 58.464 45.455 0.00 0.00 0.00 2.17
378 379 1.264749 TGGCCTAGATCTTGTGCGGT 61.265 55.000 3.32 0.00 0.00 5.68
439 440 0.905357 GGTACCACTCAGTCAGCCAT 59.095 55.000 7.15 0.00 0.00 4.40
470 471 1.795768 TCTCGTTCACTGGCAATGTC 58.204 50.000 0.00 0.00 0.00 3.06
670 682 2.838202 TCGGAAAAGGAGTGCCTATTCT 59.162 45.455 0.00 0.00 46.28 2.40
754 767 4.082523 CGTCCGGACCCTGCACAT 62.083 66.667 28.52 0.00 0.00 3.21
804 817 4.333926 ACACAAACTGAAGAAGTGAAGAGC 59.666 41.667 0.00 0.00 39.81 4.09
859 872 2.700897 GGATAGAAGAAGCAGCCAGGTA 59.299 50.000 0.00 0.00 0.00 3.08
864 877 0.753262 TCCGGATAGAAGAAGCAGCC 59.247 55.000 0.00 0.00 0.00 4.85
993 1006 3.567797 GACGCCAGCATCCTTCGC 61.568 66.667 0.00 0.00 0.00 4.70
994 1007 2.892425 GGACGCCAGCATCCTTCG 60.892 66.667 0.00 0.00 31.75 3.79
995 1008 1.817099 CTGGACGCCAGCATCCTTC 60.817 63.158 12.01 0.00 45.13 3.46
996 1009 2.270205 CTGGACGCCAGCATCCTT 59.730 61.111 12.01 0.00 45.13 3.36
1287 1591 7.823745 TTTAGATTCTTCCAGCTCAAAGTTT 57.176 32.000 0.00 0.00 0.00 2.66
1368 1674 4.678509 TTCTCAAAATGTCATACACGCC 57.321 40.909 0.00 0.00 0.00 5.68
1419 3974 2.034878 TCATCATTCTCTGGAGACGGG 58.965 52.381 0.00 0.00 37.14 5.28
1794 4349 7.119699 CCTCTGTGACAACATAGAAATTTAGCA 59.880 37.037 0.00 0.00 42.08 3.49
1815 4370 0.035725 TGCAGGCATGTTCTCCTCTG 60.036 55.000 0.00 0.00 0.00 3.35
1971 4526 3.350833 CCTGTTTGCAGCTTCTATCCTT 58.649 45.455 0.00 0.00 41.26 3.36
2033 4589 7.630005 AGATGATCTCAGAATTTATCCAGGT 57.370 36.000 0.00 0.00 0.00 4.00
2315 4871 7.252612 TCAACAACTGATAATCCAGAGGTTA 57.747 36.000 0.00 0.00 37.59 2.85
2460 5016 3.067040 GGGTAACGGAGATCTTCAGAGTC 59.933 52.174 0.96 0.00 37.60 3.36
2503 5059 9.650539 CAGAACATGGAAATCATATAGGAGTAG 57.349 37.037 0.00 0.00 34.12 2.57
2504 5060 9.379770 TCAGAACATGGAAATCATATAGGAGTA 57.620 33.333 0.00 0.00 34.12 2.59
2505 5061 8.153550 GTCAGAACATGGAAATCATATAGGAGT 58.846 37.037 0.00 0.00 34.12 3.85
2506 5062 8.152898 TGTCAGAACATGGAAATCATATAGGAG 58.847 37.037 0.00 0.00 34.12 3.69
2507 5063 8.033178 TGTCAGAACATGGAAATCATATAGGA 57.967 34.615 0.00 0.00 34.12 2.94
2508 5064 8.152898 TCTGTCAGAACATGGAAATCATATAGG 58.847 37.037 0.00 0.00 34.13 2.57
2565 5121 7.760340 CACCAACTGAGTCTTTTATAGGAGTAC 59.240 40.741 0.00 0.00 0.00 2.73
2958 6099 6.098695 AGCAATGGGACTATAAACTACCGTTA 59.901 38.462 0.00 0.00 31.86 3.18
3029 6332 6.554334 TTATGCTGGTGTTGAAAGTTACTC 57.446 37.500 0.00 0.00 0.00 2.59
3046 6349 6.459670 TCAGTGAATGATGCAATTTATGCT 57.540 33.333 0.00 0.00 44.01 3.79
3118 6423 3.146104 AGAGTTTCATGGTGGTGAAGG 57.854 47.619 0.00 0.00 39.13 3.46
3396 6708 1.134401 ACTTCACACAGACCACACTGG 60.134 52.381 0.00 0.00 45.02 4.00
3409 6721 3.186702 TGTCGGACAATCAACTTCACA 57.813 42.857 8.68 0.00 0.00 3.58
3539 6852 7.896811 TGTCAATGACAGTTCAGAACTATACT 58.103 34.615 15.73 0.00 40.46 2.12
3540 6853 8.709386 ATGTCAATGACAGTTCAGAACTATAC 57.291 34.615 21.23 10.25 46.04 1.47
3541 6854 9.725019 AAATGTCAATGACAGTTCAGAACTATA 57.275 29.630 21.32 5.73 45.58 1.31
3542 6855 8.509690 CAAATGTCAATGACAGTTCAGAACTAT 58.490 33.333 23.68 4.33 45.58 2.12
3543 6856 7.714813 TCAAATGTCAATGACAGTTCAGAACTA 59.285 33.333 23.68 0.92 45.58 2.24
3544 6857 6.543465 TCAAATGTCAATGACAGTTCAGAACT 59.457 34.615 23.68 10.27 45.58 3.01
3545 6858 6.728200 TCAAATGTCAATGACAGTTCAGAAC 58.272 36.000 23.68 5.00 45.58 3.01
3546 6859 6.940831 TCAAATGTCAATGACAGTTCAGAA 57.059 33.333 23.68 9.13 45.58 3.02
3547 6860 6.940831 TTCAAATGTCAATGACAGTTCAGA 57.059 33.333 23.68 16.79 45.58 3.27
3548 6861 7.990541 TTTTCAAATGTCAATGACAGTTCAG 57.009 32.000 23.68 14.95 45.58 3.02
3549 6862 8.819015 CAATTTTCAAATGTCAATGACAGTTCA 58.181 29.630 23.68 11.07 45.58 3.18
3550 6863 8.277713 CCAATTTTCAAATGTCAATGACAGTTC 58.722 33.333 23.68 0.00 45.58 3.01
3552 6865 7.274447 ACCAATTTTCAAATGTCAATGACAGT 58.726 30.769 21.23 16.35 46.04 3.55
3553 6866 7.718272 ACCAATTTTCAAATGTCAATGACAG 57.282 32.000 21.23 8.37 46.04 3.51
3554 6867 8.503458 AAACCAATTTTCAAATGTCAATGACA 57.497 26.923 19.08 19.08 46.90 3.58
3555 6868 9.786105 AAAAACCAATTTTCAAATGTCAATGAC 57.214 25.926 6.41 6.41 36.49 3.06
3556 6869 9.784680 CAAAAACCAATTTTCAAATGTCAATGA 57.215 25.926 0.00 0.00 39.20 2.57
3557 6870 9.570488 ACAAAAACCAATTTTCAAATGTCAATG 57.430 25.926 0.00 0.00 39.20 2.82
3560 6873 9.442047 AGTACAAAAACCAATTTTCAAATGTCA 57.558 25.926 0.00 0.00 39.20 3.58
3561 6874 9.701355 CAGTACAAAAACCAATTTTCAAATGTC 57.299 29.630 0.00 0.00 39.20 3.06
3562 6875 8.180920 GCAGTACAAAAACCAATTTTCAAATGT 58.819 29.630 0.00 0.00 39.20 2.71
3563 6876 7.372918 CGCAGTACAAAAACCAATTTTCAAATG 59.627 33.333 0.00 0.00 39.20 2.32
3564 6877 7.065204 ACGCAGTACAAAAACCAATTTTCAAAT 59.935 29.630 0.00 0.00 41.94 2.32
3565 6878 6.369065 ACGCAGTACAAAAACCAATTTTCAAA 59.631 30.769 0.00 0.00 41.94 2.69
3566 6879 5.869888 ACGCAGTACAAAAACCAATTTTCAA 59.130 32.000 0.00 0.00 41.94 2.69
3567 6880 5.411781 ACGCAGTACAAAAACCAATTTTCA 58.588 33.333 0.00 0.00 41.94 2.69
3568 6881 5.959652 ACGCAGTACAAAAACCAATTTTC 57.040 34.783 0.00 0.00 41.94 2.29
3585 6898 4.036027 AGCAAGGATCATTTGAATACGCAG 59.964 41.667 11.98 0.00 0.00 5.18
3586 6899 3.947196 AGCAAGGATCATTTGAATACGCA 59.053 39.130 11.98 0.00 0.00 5.24
3587 6900 4.558538 AGCAAGGATCATTTGAATACGC 57.441 40.909 11.98 1.57 0.00 4.42
3588 6901 9.817365 CTTAATAGCAAGGATCATTTGAATACG 57.183 33.333 11.98 0.00 0.00 3.06
3593 6906 9.631257 TGAATCTTAATAGCAAGGATCATTTGA 57.369 29.630 11.98 0.00 0.00 2.69
3594 6907 9.894783 CTGAATCTTAATAGCAAGGATCATTTG 57.105 33.333 0.00 0.00 0.00 2.32
3595 6908 9.857656 TCTGAATCTTAATAGCAAGGATCATTT 57.142 29.630 0.00 0.00 0.00 2.32
3596 6909 9.282569 GTCTGAATCTTAATAGCAAGGATCATT 57.717 33.333 0.00 0.00 0.00 2.57
3597 6910 8.435187 TGTCTGAATCTTAATAGCAAGGATCAT 58.565 33.333 0.00 0.00 0.00 2.45
3598 6911 7.712639 GTGTCTGAATCTTAATAGCAAGGATCA 59.287 37.037 0.00 0.00 0.00 2.92
3599 6912 7.712639 TGTGTCTGAATCTTAATAGCAAGGATC 59.287 37.037 0.00 0.00 0.00 3.36
3834 7147 5.479306 TCAGTTAGACTACAACAGAATGCC 58.521 41.667 0.00 0.00 42.53 4.40
3981 7294 2.038387 ACTGACGGACAAGCAAAACT 57.962 45.000 0.00 0.00 0.00 2.66
4336 7729 4.612259 GCAAGAGCAACATCATTATAGCGG 60.612 45.833 0.00 0.00 41.58 5.52
4417 7810 3.065371 GTCACACTGGAAAACTGGAGTTG 59.935 47.826 0.00 0.00 38.44 3.16
4638 8031 6.619329 ATGGCATACTTAAAAATTGTGGGT 57.381 33.333 0.00 0.00 0.00 4.51
4663 8056 6.543831 CCCAATAGTAGCAAGCAAAATCTAGT 59.456 38.462 0.00 0.00 0.00 2.57
4692 8085 7.122055 CCTTTGCCTAATGGATGTAACAAACTA 59.878 37.037 0.00 0.00 33.98 2.24
4752 8145 0.904649 TCCACAATGACAGCGAGGAT 59.095 50.000 0.00 0.00 0.00 3.24
4758 8151 0.524862 CAAGGCTCCACAATGACAGC 59.475 55.000 0.00 0.00 0.00 4.40
4766 8159 2.101783 CCAAATATGCAAGGCTCCACA 58.898 47.619 0.00 0.00 0.00 4.17
4767 8160 1.202452 GCCAAATATGCAAGGCTCCAC 60.202 52.381 9.38 0.00 43.70 4.02
5212 8607 5.769662 ACATGGTTGATCACATACAAGTGTT 59.230 36.000 0.00 0.00 40.37 3.32
5309 8704 2.191513 CATTCCCTGATGCGCCCTG 61.192 63.158 4.18 0.45 0.00 4.45
5338 8733 4.424626 CATTCAGCATGTACACTACGTCT 58.575 43.478 0.00 0.00 37.40 4.18
5503 8898 4.039245 ACAGAGTAACAGCACTAAGAGCAA 59.961 41.667 0.00 0.00 0.00 3.91
5636 9034 8.540492 CGCTAAACCTGTACAAGATATGTTTAG 58.460 37.037 19.97 19.97 43.63 1.85
5709 9110 8.874744 AAAAAGAATAAACCTCCTAACTACCC 57.125 34.615 0.00 0.00 0.00 3.69
5914 9319 4.526650 TGAAGGATAATGGCGCTAGATGTA 59.473 41.667 7.64 0.00 0.00 2.29
5931 9336 1.125093 ACGACATGGTGGGTGAAGGA 61.125 55.000 0.00 0.00 0.00 3.36
5977 9382 7.170965 AGAGGTTCAGATATGTTGTTGTTGAT 58.829 34.615 0.00 0.00 0.00 2.57
5990 9395 2.429610 GTGCGGGTAAGAGGTTCAGATA 59.570 50.000 0.00 0.00 0.00 1.98
6015 9420 4.820897 CTTGAGCGTGCCATAGGATATAA 58.179 43.478 0.00 0.00 0.00 0.98
6192 9601 5.538053 CAGATTCCTGAGAAGATAGGCTACA 59.462 44.000 0.00 0.00 43.02 2.74
6298 9708 2.909965 GGCGCGAGAGAGGGAGAT 60.910 66.667 12.10 0.00 0.00 2.75
6333 9743 1.230635 CCTTCTGTGCGTTGGTGAGG 61.231 60.000 0.00 0.00 0.00 3.86
6398 9808 2.390599 GCTGCCGCGAGTTCATCAA 61.391 57.895 8.23 0.00 0.00 2.57
6445 9855 1.303309 CCCGCAATGATGAAGGAGAC 58.697 55.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.