Multiple sequence alignment - TraesCS3D01G187900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G187900 chr3D 100.000 5579 0 0 1 5579 174413748 174419326 0.000000e+00 10303.0
1 TraesCS3D01G187900 chr3D 100.000 141 0 0 5319 5459 174418906 174419046 1.540000e-65 261.0
2 TraesCS3D01G187900 chr3D 100.000 141 0 0 5159 5299 174419066 174419206 1.540000e-65 261.0
3 TraesCS3D01G187900 chr3D 93.750 112 6 1 710 821 174414407 174414517 3.460000e-37 167.0
4 TraesCS3D01G187900 chr3D 93.750 112 6 1 660 770 174414457 174414568 3.460000e-37 167.0
5 TraesCS3D01G187900 chr3D 90.654 107 7 3 5441 5545 584219071 584219176 7.540000e-29 139.0
6 TraesCS3D01G187900 chr3B 97.127 2750 62 7 2141 4876 252930725 252933471 0.000000e+00 4625.0
7 TraesCS3D01G187900 chr3B 92.632 1303 55 15 708 1982 252929438 252930727 0.000000e+00 1836.0
8 TraesCS3D01G187900 chr3B 89.506 486 22 13 1 468 252925437 252925911 6.230000e-164 588.0
9 TraesCS3D01G187900 chr3B 86.967 399 48 3 4876 5270 781723604 781723206 3.970000e-121 446.0
10 TraesCS3D01G187900 chr3B 90.283 247 18 5 558 799 252929334 252929579 9.020000e-83 318.0
11 TraesCS3D01G187900 chr3B 83.396 265 21 6 5319 5576 781723317 781723069 2.020000e-54 224.0
12 TraesCS3D01G187900 chr3B 95.918 98 2 2 466 562 252925966 252926062 2.080000e-34 158.0
13 TraesCS3D01G187900 chr3B 77.385 283 49 9 4874 5151 442364747 442364475 2.690000e-33 154.0
14 TraesCS3D01G187900 chr3B 90.099 101 8 2 660 758 252929490 252929590 4.540000e-26 130.0
15 TraesCS3D01G187900 chr3B 92.424 66 4 1 756 821 252929436 252929500 5.950000e-15 93.5
16 TraesCS3D01G187900 chr3A 97.159 1619 40 4 2141 3758 213130284 213131897 0.000000e+00 2730.0
17 TraesCS3D01G187900 chr3A 91.894 1357 74 14 657 1982 213128935 213130286 0.000000e+00 1864.0
18 TraesCS3D01G187900 chr3A 97.048 1050 22 8 3756 4804 213131978 213133019 0.000000e+00 1759.0
19 TraesCS3D01G187900 chr3A 89.485 485 23 11 4 469 213128156 213128631 6.230000e-164 588.0
20 TraesCS3D01G187900 chr3A 88.056 360 32 9 466 816 213128688 213129045 3.110000e-112 416.0
21 TraesCS3D01G187900 chr3A 93.571 140 9 0 660 799 213128989 213129128 5.660000e-50 209.0
22 TraesCS3D01G187900 chr3A 93.069 101 5 2 660 758 213129039 213129139 4.500000e-31 147.0
23 TraesCS3D01G187900 chrUn 96.341 410 11 2 4877 5283 90108380 90108788 0.000000e+00 671.0
24 TraesCS3D01G187900 chrUn 94.697 264 4 2 5319 5579 90108665 90108921 8.710000e-108 401.0
25 TraesCS3D01G187900 chr7B 95.377 411 15 2 4876 5283 717148227 717147818 0.000000e+00 651.0
26 TraesCS3D01G187900 chr7B 95.134 411 16 2 4876 5283 717223699 717223290 0.000000e+00 645.0
27 TraesCS3D01G187900 chr7B 92.803 264 9 2 5319 5579 717223413 717223157 1.900000e-99 374.0
28 TraesCS3D01G187900 chr7B 92.803 264 8 3 5319 5579 717147941 717147686 6.830000e-99 372.0
29 TraesCS3D01G187900 chr1D 81.458 782 125 17 3837 4608 324618510 324619281 1.710000e-174 623.0
30 TraesCS3D01G187900 chr1D 94.536 183 10 0 1215 1397 324617137 324617319 3.290000e-72 283.0
31 TraesCS3D01G187900 chr1D 93.048 187 10 3 1959 2143 126223527 126223342 2.560000e-68 270.0
32 TraesCS3D01G187900 chr1D 89.510 143 12 1 995 1134 324616902 324617044 1.600000e-40 178.0
33 TraesCS3D01G187900 chr1A 81.654 774 112 22 3843 4608 420395481 420394730 2.860000e-172 616.0
34 TraesCS3D01G187900 chr1A 93.989 183 11 0 1215 1397 420396874 420396692 1.530000e-70 278.0
35 TraesCS3D01G187900 chr1A 89.051 137 12 1 1001 1134 420397117 420396981 3.460000e-37 167.0
36 TraesCS3D01G187900 chr2A 87.250 400 45 3 4876 5270 752798018 752797620 8.520000e-123 451.0
37 TraesCS3D01G187900 chr2A 96.450 169 6 0 1978 2146 250729541 250729709 4.260000e-71 279.0
38 TraesCS3D01G187900 chr2A 83.969 262 22 5 5319 5576 752797731 752797486 3.360000e-57 233.0
39 TraesCS3D01G187900 chr2D 96.471 170 5 1 1981 2149 391812508 391812339 4.260000e-71 279.0
40 TraesCS3D01G187900 chr7D 96.951 164 5 0 1981 2144 224056713 224056550 5.510000e-70 276.0
41 TraesCS3D01G187900 chr6B 95.402 174 7 1 1975 2147 680728660 680728487 5.510000e-70 276.0
42 TraesCS3D01G187900 chr4D 94.915 177 7 2 1980 2155 505322489 505322314 5.510000e-70 276.0
43 TraesCS3D01G187900 chr2B 95.906 171 6 1 1975 2145 235054352 235054183 5.510000e-70 276.0
44 TraesCS3D01G187900 chr5D 93.296 179 9 2 1967 2145 498492525 498492350 1.540000e-65 261.0
45 TraesCS3D01G187900 chr5A 90.816 196 14 4 1978 2169 386181226 386181031 5.540000e-65 259.0
46 TraesCS3D01G187900 chr4A 79.442 394 49 14 4876 5240 66501833 66502223 3.340000e-62 250.0
47 TraesCS3D01G187900 chr4A 93.902 82 5 0 5319 5400 66502142 66502223 2.110000e-24 124.0
48 TraesCS3D01G187900 chr6A 93.220 59 4 0 1661 1719 603185234 603185176 2.770000e-13 87.9
49 TraesCS3D01G187900 chr4B 92.000 50 2 2 1671 1719 88933965 88933917 1.000000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G187900 chr3D 174413748 174419326 5578 False 10303.000000 10303 100.000000 1 5579 1 chr3D.!!$F1 5578
1 TraesCS3D01G187900 chr3B 252925437 252933471 8034 False 1106.928571 4625 92.569857 1 4876 7 chr3B.!!$F1 4875
2 TraesCS3D01G187900 chr3B 781723069 781723604 535 True 335.000000 446 85.181500 4876 5576 2 chr3B.!!$R2 700
3 TraesCS3D01G187900 chr3A 213128156 213133019 4863 False 1101.857143 2730 92.897429 4 4804 7 chr3A.!!$F1 4800
4 TraesCS3D01G187900 chrUn 90108380 90108921 541 False 536.000000 671 95.519000 4877 5579 2 chrUn.!!$F1 702
5 TraesCS3D01G187900 chr7B 717147686 717148227 541 True 511.500000 651 94.090000 4876 5579 2 chr7B.!!$R1 703
6 TraesCS3D01G187900 chr7B 717223157 717223699 542 True 509.500000 645 93.968500 4876 5579 2 chr7B.!!$R2 703
7 TraesCS3D01G187900 chr1D 324616902 324619281 2379 False 361.333333 623 88.501333 995 4608 3 chr1D.!!$F1 3613
8 TraesCS3D01G187900 chr1A 420394730 420397117 2387 True 353.666667 616 88.231333 1001 4608 3 chr1A.!!$R1 3607
9 TraesCS3D01G187900 chr2A 752797486 752798018 532 True 342.000000 451 85.609500 4876 5576 2 chr2A.!!$R1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 4308 0.040425 GTTGCACCAGCGTAAACCAG 60.040 55.000 0.0 0.0 46.23 4.00 F
909 4374 1.139095 GGGGTCGCAGTAGAAGACG 59.861 63.158 0.0 0.0 35.87 4.18 F
1177 4648 1.142465 TCCGATCTACGCCCTTCTACT 59.858 52.381 0.0 0.0 41.07 2.57 F
2274 6037 2.542550 TGGCTACCACTTTACCAGCTA 58.457 47.619 0.0 0.0 32.78 3.32 F
3093 6868 3.469863 GAGTTGTGGGGGCACGACA 62.470 63.158 0.0 0.0 40.90 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 5991 1.609555 GGGCTGTGAGGAGTATAGTCG 59.390 57.143 1.45 0.0 0.00 4.18 R
2753 6523 7.566858 ACAAAATGAATTCGCATGTAAGAAC 57.433 32.000 0.04 0.0 0.00 3.01 R
3093 6868 1.283029 CCTGATGGGTGGAGTTGTGAT 59.717 52.381 0.00 0.0 0.00 3.06 R
3277 7052 1.302949 ATGGACGGTGAACCATGGG 59.697 57.895 18.09 0.0 44.01 4.00 R
4632 9058 2.412525 CTTGCTGCGTTGTGGCAA 59.587 55.556 0.00 0.0 43.39 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.624776 CCAATAATAATGAGGAGAAACCAGAAC 58.375 37.037 0.00 0.00 42.04 3.01
58 59 4.982241 AATGAGGAGAAACCAGAACAGA 57.018 40.909 0.00 0.00 42.04 3.41
59 60 4.982241 ATGAGGAGAAACCAGAACAGAA 57.018 40.909 0.00 0.00 42.04 3.02
60 61 4.771114 TGAGGAGAAACCAGAACAGAAA 57.229 40.909 0.00 0.00 42.04 2.52
64 65 3.435169 GGAGAAACCAGAACAGAAAGGGT 60.435 47.826 0.00 0.00 38.79 4.34
65 66 3.555966 AGAAACCAGAACAGAAAGGGTG 58.444 45.455 0.00 0.00 30.91 4.61
156 176 1.208642 GCACACCTTTTGCTTGCGAC 61.209 55.000 0.00 0.00 37.00 5.19
169 189 0.758734 TTGCGACAGGGGATGGATAG 59.241 55.000 0.00 0.00 0.00 2.08
254 274 0.402504 TGGTGGGAATTAACGTGGCT 59.597 50.000 0.00 0.00 0.00 4.75
290 310 1.133363 CCATGCCGATTGCGAAAACG 61.133 55.000 0.00 0.00 45.60 3.60
294 314 0.700764 GCCGATTGCGAAAACGAAAC 59.299 50.000 7.46 0.00 40.82 2.78
295 315 1.922444 GCCGATTGCGAAAACGAAACA 60.922 47.619 7.46 0.00 40.82 2.83
296 316 2.580589 CCGATTGCGAAAACGAAACAT 58.419 42.857 7.46 0.00 40.82 2.71
297 317 3.738399 CCGATTGCGAAAACGAAACATA 58.262 40.909 7.46 0.00 40.82 2.29
301 321 6.183359 CCGATTGCGAAAACGAAACATATTTT 60.183 34.615 7.46 0.00 40.82 1.82
303 323 8.036432 CGATTGCGAAAACGAAACATATTTTAG 58.964 33.333 0.00 0.00 40.82 1.85
304 324 8.958175 ATTGCGAAAACGAAACATATTTTAGA 57.042 26.923 0.00 0.00 0.00 2.10
305 325 8.783999 TTGCGAAAACGAAACATATTTTAGAA 57.216 26.923 0.00 0.00 0.00 2.10
306 326 8.429739 TGCGAAAACGAAACATATTTTAGAAG 57.570 30.769 0.00 0.00 0.00 2.85
307 327 8.283992 TGCGAAAACGAAACATATTTTAGAAGA 58.716 29.630 0.00 0.00 0.00 2.87
308 328 9.274065 GCGAAAACGAAACATATTTTAGAAGAT 57.726 29.630 0.00 0.00 0.00 2.40
317 337 8.601243 AACATATTTTAGAAGATGCGAAAACG 57.399 30.769 0.81 0.00 37.87 3.60
326 346 6.250819 AGAAGATGCGAAAACGAATTATGTG 58.749 36.000 0.00 0.00 0.00 3.21
363 383 0.679002 ATGCCATTTCTGCGAGCTGT 60.679 50.000 0.00 0.00 0.00 4.40
378 398 3.181550 CGAGCTGTTTTTATTGCTTTGCG 60.182 43.478 0.00 0.00 35.76 4.85
382 402 4.143410 GCTGTTTTTATTGCTTTGCGTACC 60.143 41.667 0.00 0.00 0.00 3.34
394 414 2.068837 TGCGTACCGAAAGTCGATTT 57.931 45.000 0.00 0.00 43.74 2.17
395 415 1.987770 TGCGTACCGAAAGTCGATTTC 59.012 47.619 0.00 2.39 43.74 2.17
396 416 1.322637 GCGTACCGAAAGTCGATTTCC 59.677 52.381 11.96 0.00 43.74 3.13
437 457 5.053978 AGGTTCATGGTTGAGAAAGTTCT 57.946 39.130 0.00 0.00 41.00 3.01
496 576 3.323403 TCACAACAATAAAAAGCCTGGGG 59.677 43.478 0.00 0.00 0.00 4.96
565 3922 7.671398 AGGTTCATTCACAACAGGAGATATTTT 59.329 33.333 0.00 0.00 0.00 1.82
615 3979 7.795534 AAGCATGAGATATAAGAGACCTGAT 57.204 36.000 0.00 0.00 0.00 2.90
633 3997 7.723172 AGACCTGATGAAATCTGAAAAGACTTT 59.277 33.333 0.00 0.00 45.81 2.66
635 3999 9.007901 ACCTGATGAAATCTGAAAAGACTTTAG 57.992 33.333 0.00 0.00 45.81 1.85
658 4022 2.048503 GCTTGGTCGGCACTACGT 60.049 61.111 0.00 0.00 34.94 3.57
675 4040 1.202639 ACGTCCATGCAACAGACAGAA 60.203 47.619 12.77 0.00 0.00 3.02
682 4047 0.179215 GCAACAGACAGAATTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
706 4171 1.832167 GCCCACTTCAAACCAGCCA 60.832 57.895 0.00 0.00 0.00 4.75
799 4264 2.192861 CACGCCAGCCCACTTCAAA 61.193 57.895 0.00 0.00 0.00 2.69
801 4266 1.898574 CGCCAGCCCACTTCAAACT 60.899 57.895 0.00 0.00 0.00 2.66
802 4267 0.605319 CGCCAGCCCACTTCAAACTA 60.605 55.000 0.00 0.00 0.00 2.24
803 4268 1.168714 GCCAGCCCACTTCAAACTAG 58.831 55.000 0.00 0.00 0.00 2.57
804 4269 1.168714 CCAGCCCACTTCAAACTAGC 58.831 55.000 0.00 0.00 0.00 3.42
805 4270 1.168714 CAGCCCACTTCAAACTAGCC 58.831 55.000 0.00 0.00 0.00 3.93
806 4271 0.321653 AGCCCACTTCAAACTAGCCG 60.322 55.000 0.00 0.00 0.00 5.52
807 4272 1.305930 GCCCACTTCAAACTAGCCGG 61.306 60.000 0.00 0.00 0.00 6.13
808 4273 1.305930 CCCACTTCAAACTAGCCGGC 61.306 60.000 21.89 21.89 0.00 6.13
809 4274 1.305930 CCACTTCAAACTAGCCGGCC 61.306 60.000 26.15 5.07 0.00 6.13
810 4275 1.002502 ACTTCAAACTAGCCGGCCC 60.003 57.895 26.15 0.00 0.00 5.80
811 4276 1.002624 CTTCAAACTAGCCGGCCCA 60.003 57.895 26.15 11.01 0.00 5.36
812 4277 0.608035 CTTCAAACTAGCCGGCCCAA 60.608 55.000 26.15 8.38 0.00 4.12
813 4278 0.608035 TTCAAACTAGCCGGCCCAAG 60.608 55.000 26.15 20.71 0.00 3.61
814 4279 2.361230 AAACTAGCCGGCCCAAGC 60.361 61.111 26.15 0.00 38.76 4.01
815 4280 3.204467 AAACTAGCCGGCCCAAGCA 62.204 57.895 26.15 0.01 42.56 3.91
816 4281 2.706952 AAACTAGCCGGCCCAAGCAA 62.707 55.000 26.15 0.00 42.56 3.91
817 4282 2.361104 CTAGCCGGCCCAAGCAAA 60.361 61.111 26.15 0.00 42.56 3.68
818 4283 2.675075 TAGCCGGCCCAAGCAAAC 60.675 61.111 26.15 0.00 42.56 2.93
819 4284 3.499461 TAGCCGGCCCAAGCAAACA 62.499 57.895 26.15 0.00 42.56 2.83
820 4285 4.362476 GCCGGCCCAAGCAAACAG 62.362 66.667 18.11 0.00 42.56 3.16
821 4286 2.912025 CCGGCCCAAGCAAACAGT 60.912 61.111 0.00 0.00 42.56 3.55
822 4287 2.336088 CGGCCCAAGCAAACAGTG 59.664 61.111 0.00 0.00 42.56 3.66
823 4288 2.736531 GGCCCAAGCAAACAGTGG 59.263 61.111 0.00 0.00 42.56 4.00
825 4290 4.275781 CCCAAGCAAACAGTGGGT 57.724 55.556 0.00 0.00 46.03 4.51
826 4291 2.515288 CCCAAGCAAACAGTGGGTT 58.485 52.632 0.00 0.00 46.03 4.11
827 4292 0.104671 CCCAAGCAAACAGTGGGTTG 59.895 55.000 9.42 9.42 46.03 3.77
828 4293 0.530431 CCAAGCAAACAGTGGGTTGC 60.530 55.000 20.41 20.41 40.35 4.17
829 4294 0.175302 CAAGCAAACAGTGGGTTGCA 59.825 50.000 26.29 0.00 40.35 4.08
830 4295 0.175531 AAGCAAACAGTGGGTTGCAC 59.824 50.000 26.29 0.00 40.35 4.57
831 4296 1.227234 GCAAACAGTGGGTTGCACC 60.227 57.895 22.13 0.00 40.35 5.01
832 4297 1.954362 GCAAACAGTGGGTTGCACCA 61.954 55.000 22.13 0.00 41.02 4.17
833 4298 0.102844 CAAACAGTGGGTTGCACCAG 59.897 55.000 0.00 0.00 42.20 4.00
834 4299 1.675720 AAACAGTGGGTTGCACCAGC 61.676 55.000 0.00 0.00 42.20 4.85
835 4300 3.663176 CAGTGGGTTGCACCAGCG 61.663 66.667 0.00 0.00 46.23 5.18
836 4301 4.189580 AGTGGGTTGCACCAGCGT 62.190 61.111 0.00 0.00 46.23 5.07
837 4302 2.281208 GTGGGTTGCACCAGCGTA 60.281 61.111 0.00 0.00 46.23 4.42
838 4303 1.894756 GTGGGTTGCACCAGCGTAA 60.895 57.895 0.00 0.00 46.23 3.18
839 4304 1.152943 TGGGTTGCACCAGCGTAAA 60.153 52.632 7.49 0.00 46.23 2.01
840 4305 1.284715 GGGTTGCACCAGCGTAAAC 59.715 57.895 7.49 0.00 46.23 2.01
841 4306 1.284715 GGTTGCACCAGCGTAAACC 59.715 57.895 0.00 0.00 46.23 3.27
842 4307 1.448922 GGTTGCACCAGCGTAAACCA 61.449 55.000 0.00 0.00 46.23 3.67
843 4308 0.040425 GTTGCACCAGCGTAAACCAG 60.040 55.000 0.00 0.00 46.23 4.00
844 4309 1.791103 TTGCACCAGCGTAAACCAGC 61.791 55.000 0.00 0.00 46.23 4.85
845 4310 2.978018 GCACCAGCGTAAACCAGCC 61.978 63.158 0.00 0.00 0.00 4.85
846 4311 2.358247 ACCAGCGTAAACCAGCCG 60.358 61.111 0.00 0.00 0.00 5.52
847 4312 3.124921 CCAGCGTAAACCAGCCGG 61.125 66.667 0.00 0.00 38.77 6.13
848 4313 3.124921 CAGCGTAAACCAGCCGGG 61.125 66.667 2.18 0.00 44.81 5.73
851 4316 4.708386 CGTAAACCAGCCGGGCCA 62.708 66.667 17.02 0.00 42.05 5.36
874 4339 1.574702 GGGTGTTAGCTTCGTGTGCC 61.575 60.000 0.00 0.00 0.00 5.01
909 4374 1.139095 GGGGTCGCAGTAGAAGACG 59.861 63.158 0.00 0.00 35.87 4.18
919 4384 1.618837 AGTAGAAGACGGAAGCAGCAA 59.381 47.619 0.00 0.00 0.00 3.91
952 4420 2.667199 AAAAACGCCGTCCTCCCG 60.667 61.111 0.00 0.00 0.00 5.14
1135 4606 1.668294 CTCAAGCACGGTCAGTCCT 59.332 57.895 0.00 0.00 0.00 3.85
1175 4646 1.893544 CTCCGATCTACGCCCTTCTA 58.106 55.000 0.00 0.00 41.07 2.10
1177 4648 1.142465 TCCGATCTACGCCCTTCTACT 59.858 52.381 0.00 0.00 41.07 2.57
1181 4652 4.063689 CGATCTACGCCCTTCTACTTCTA 58.936 47.826 0.00 0.00 34.51 2.10
1183 4654 3.549794 TCTACGCCCTTCTACTTCTACC 58.450 50.000 0.00 0.00 0.00 3.18
1213 4725 4.212143 GGGTTAACCTGTCGGAAACTAT 57.788 45.455 23.69 0.00 35.85 2.12
1527 5039 7.155328 GGATCGACCTCATCAACTTATTATGT 58.845 38.462 0.00 0.00 35.41 2.29
1705 5236 8.903820 AGCTGTCTAAAATGTCTTACAAAAGTT 58.096 29.630 0.00 0.00 34.13 2.66
1805 5336 8.989131 ACATCTTAGTTGCTATAGTTCCCTTAA 58.011 33.333 0.84 0.00 0.00 1.85
1816 5347 3.412386 AGTTCCCTTAAGCACATGTCAC 58.588 45.455 0.00 0.00 0.00 3.67
1898 5429 9.787435 TCTTGTATCTGTTGGTACTTTATTTGT 57.213 29.630 0.00 0.00 0.00 2.83
1905 5436 7.778853 TCTGTTGGTACTTTATTTGTTTACCCA 59.221 33.333 0.00 0.00 32.63 4.51
1991 5754 8.716674 TTTAGAAATATATGTACTCCCTCCGT 57.283 34.615 0.00 0.00 0.00 4.69
1992 5755 8.716674 TTAGAAATATATGTACTCCCTCCGTT 57.283 34.615 0.00 0.00 0.00 4.44
1993 5756 7.229581 AGAAATATATGTACTCCCTCCGTTC 57.770 40.000 0.00 0.00 0.00 3.95
1994 5757 5.997384 AATATATGTACTCCCTCCGTTCC 57.003 43.478 0.00 0.00 0.00 3.62
1995 5758 3.614568 ATATGTACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
1996 5759 4.736611 ATATGTACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
1997 5760 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1998 5761 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1999 5762 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2000 5763 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2001 5764 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2002 5765 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2003 5766 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2004 5767 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2005 5768 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2006 5769 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2007 5770 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2008 5771 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2009 5772 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2010 5773 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2011 5774 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2027 5790 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
2028 5791 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
2029 5792 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
2030 5793 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
2031 5794 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
2032 5795 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
2033 5796 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
2034 5797 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
2035 5798 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
2036 5799 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
2037 5800 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
2038 5801 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
2039 5802 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
2040 5803 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
2041 5804 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
2043 5806 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
2044 5807 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
2045 5808 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
2046 5809 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
2047 5810 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
2048 5811 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
2049 5812 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
2050 5813 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
2051 5814 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
2052 5815 7.956328 ACCACATACGGATGTATATAGATGT 57.044 36.000 14.23 0.00 44.82 3.06
2053 5816 9.470399 AACCACATACGGATGTATATAGATGTA 57.530 33.333 14.23 0.00 44.82 2.29
2054 5817 9.642343 ACCACATACGGATGTATATAGATGTAT 57.358 33.333 14.23 0.00 44.82 2.29
2080 5843 7.969387 TTAAGCGTAGATTCATTCATTTTGC 57.031 32.000 0.00 0.00 37.33 3.68
2081 5844 5.824904 AGCGTAGATTCATTCATTTTGCT 57.175 34.783 0.00 0.00 0.00 3.91
2082 5845 5.814783 AGCGTAGATTCATTCATTTTGCTC 58.185 37.500 0.00 0.00 0.00 4.26
2083 5846 4.972440 GCGTAGATTCATTCATTTTGCTCC 59.028 41.667 0.00 0.00 0.00 4.70
2084 5847 5.200454 CGTAGATTCATTCATTTTGCTCCG 58.800 41.667 0.00 0.00 0.00 4.63
2085 5848 5.220662 CGTAGATTCATTCATTTTGCTCCGT 60.221 40.000 0.00 0.00 0.00 4.69
2086 5849 6.019075 CGTAGATTCATTCATTTTGCTCCGTA 60.019 38.462 0.00 0.00 0.00 4.02
2087 5850 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2088 5851 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2089 5852 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2090 5853 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2091 5854 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2092 5855 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2093 5856 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2094 5857 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2095 5858 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2096 5859 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2097 5860 3.728076 TTGCTCCGTATGTAGTCCATC 57.272 47.619 0.00 0.00 34.86 3.51
2098 5861 2.945456 TGCTCCGTATGTAGTCCATCT 58.055 47.619 0.00 0.00 34.86 2.90
2099 5862 4.094830 TGCTCCGTATGTAGTCCATCTA 57.905 45.455 0.00 0.00 34.86 1.98
2100 5863 4.072839 TGCTCCGTATGTAGTCCATCTAG 58.927 47.826 0.00 0.00 34.86 2.43
2101 5864 4.073549 GCTCCGTATGTAGTCCATCTAGT 58.926 47.826 0.00 0.00 34.86 2.57
2102 5865 4.083217 GCTCCGTATGTAGTCCATCTAGTG 60.083 50.000 0.00 0.00 34.86 2.74
2119 5882 8.006298 CATCTAGTGGAATCTCTACAAAGTCT 57.994 38.462 0.00 0.00 29.47 3.24
2120 5883 8.474025 CATCTAGTGGAATCTCTACAAAGTCTT 58.526 37.037 0.00 0.00 29.47 3.01
2121 5884 9.702253 ATCTAGTGGAATCTCTACAAAGTCTTA 57.298 33.333 0.00 0.00 29.47 2.10
2122 5885 9.702253 TCTAGTGGAATCTCTACAAAGTCTTAT 57.298 33.333 0.00 0.00 29.47 1.73
2136 5899 8.943909 ACAAAGTCTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2137 5900 7.985752 ACAAAGTCTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2138 5901 6.667558 AGTCTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2139 5902 6.379579 AGTCTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2165 5928 4.516698 AGTTACTTGGAGCACAGTTCATTG 59.483 41.667 0.00 0.00 0.00 2.82
2202 5965 5.691305 TGAAAATTTCAAGGTTTCATCAGCG 59.309 36.000 5.87 0.00 36.58 5.18
2274 6037 2.542550 TGGCTACCACTTTACCAGCTA 58.457 47.619 0.00 0.00 32.78 3.32
2282 6045 4.975794 ACCACTTTACCAGCTATAGGGATT 59.024 41.667 1.04 0.00 0.00 3.01
2753 6523 8.905702 GCTGACTTGTGTGAAACTTAATATTTG 58.094 33.333 0.00 0.00 38.04 2.32
2955 6730 8.922058 TGTTAAAGACGTCAGTAATAGATTCC 57.078 34.615 19.50 2.79 0.00 3.01
2956 6731 8.525316 TGTTAAAGACGTCAGTAATAGATTCCA 58.475 33.333 19.50 5.14 0.00 3.53
3093 6868 3.469863 GAGTTGTGGGGGCACGACA 62.470 63.158 0.00 0.00 40.90 4.35
3256 7031 8.882199 CGCGTAATCATCAATTTATTGTGTTAG 58.118 33.333 0.00 0.00 38.84 2.34
3277 7052 7.491372 TGTTAGAGTTAAGCACATATACACTGC 59.509 37.037 0.00 0.00 0.00 4.40
3356 7132 0.250793 TAATGTGGTCGTTGCCGGAT 59.749 50.000 5.05 0.00 33.95 4.18
3381 7157 6.072175 TCCTGGATTTTAAAGATGGTTGTTCG 60.072 38.462 0.00 0.00 0.00 3.95
3426 7202 6.539173 TCTTACAAGCTATTTGAAGGTTCCA 58.461 36.000 0.00 0.00 39.21 3.53
3545 7321 7.228308 CCTTTGTTTCCCAATTTCTGCAATTAA 59.772 33.333 0.00 0.00 32.90 1.40
3596 7372 2.607499 TCATTGCCACCTTGGATGTTT 58.393 42.857 0.00 0.00 40.96 2.83
3744 7520 3.618594 CAGGTGCACACATACACATACTC 59.381 47.826 20.43 0.00 38.57 2.59
4181 8570 1.464608 CGCAAAAATGAGCTCGAGGAA 59.535 47.619 15.58 0.00 0.00 3.36
4324 8749 3.813166 TCCACTGGACGATTCTTTTTGTC 59.187 43.478 0.00 0.00 0.00 3.18
4611 9037 7.819900 ACTAGTGTTGTTCCAAAGTCTATCATC 59.180 37.037 0.00 0.00 0.00 2.92
4632 9058 7.062322 TCATCCATGTTATGTATCCAAAAGCT 58.938 34.615 5.48 0.00 0.00 3.74
4676 9102 3.202829 TCGGGTTCTAACAGTTTGCTT 57.797 42.857 0.00 0.00 0.00 3.91
4861 9288 4.640771 ATGACTTGTGGTGGAGTAACAT 57.359 40.909 0.00 0.00 0.00 2.71
4984 9411 4.581824 AGATGGCGTATTGATGCATTCTTT 59.418 37.500 0.00 0.00 39.56 2.52
5132 9563 2.180131 GACTGCGTGCAAAGCCAGAG 62.180 60.000 12.17 6.39 42.08 3.35
5149 9580 4.618927 GCCAGAGCACAGAAATTTAATGCA 60.619 41.667 18.03 0.00 38.79 3.96
5178 9609 3.709653 ACTTCACCAGTCCAACAGTTCTA 59.290 43.478 0.00 0.00 0.00 2.10
5272 9703 3.573110 ACAAGAACGAGCAGTTACTACCT 59.427 43.478 0.00 0.00 44.35 3.08
5273 9704 4.167268 CAAGAACGAGCAGTTACTACCTC 58.833 47.826 0.00 3.15 44.35 3.85
5274 9705 3.418995 AGAACGAGCAGTTACTACCTCA 58.581 45.455 11.09 0.00 44.35 3.86
5275 9706 4.017808 AGAACGAGCAGTTACTACCTCAT 58.982 43.478 11.09 1.96 44.35 2.90
5276 9707 3.784701 ACGAGCAGTTACTACCTCATG 57.215 47.619 11.09 0.00 0.00 3.07
5277 9708 3.353557 ACGAGCAGTTACTACCTCATGA 58.646 45.455 11.09 0.00 0.00 3.07
5278 9709 3.378742 ACGAGCAGTTACTACCTCATGAG 59.621 47.826 16.24 16.24 0.00 2.90
5279 9710 3.378742 CGAGCAGTTACTACCTCATGAGT 59.621 47.826 21.11 11.70 0.00 3.41
5280 9711 4.496673 CGAGCAGTTACTACCTCATGAGTC 60.497 50.000 21.11 6.71 0.00 3.36
5281 9712 4.344978 AGCAGTTACTACCTCATGAGTCA 58.655 43.478 21.11 7.57 0.00 3.41
5282 9713 4.959210 AGCAGTTACTACCTCATGAGTCAT 59.041 41.667 21.11 0.00 0.00 3.06
5283 9714 5.046529 GCAGTTACTACCTCATGAGTCATG 58.953 45.833 24.60 24.60 42.60 3.07
5284 9715 5.163509 GCAGTTACTACCTCATGAGTCATGA 60.164 44.000 29.39 29.39 46.84 3.07
5292 9723 2.993937 TCATGAGTCATGAGCATTGCA 58.006 42.857 28.18 7.19 44.60 4.08
5293 9724 3.349022 TCATGAGTCATGAGCATTGCAA 58.651 40.909 28.18 0.00 44.60 4.08
5294 9725 3.128068 TCATGAGTCATGAGCATTGCAAC 59.872 43.478 28.18 5.22 44.60 4.17
5295 9726 2.506444 TGAGTCATGAGCATTGCAACA 58.494 42.857 11.91 10.84 0.00 3.33
5296 9727 3.086282 TGAGTCATGAGCATTGCAACAT 58.914 40.909 11.91 12.60 0.00 2.71
5297 9728 3.128068 TGAGTCATGAGCATTGCAACATC 59.872 43.478 11.91 0.36 0.00 3.06
5298 9729 3.086282 AGTCATGAGCATTGCAACATCA 58.914 40.909 11.91 6.92 0.00 3.07
5299 9730 3.699538 AGTCATGAGCATTGCAACATCAT 59.300 39.130 11.91 14.10 0.00 2.45
5300 9731 4.159693 AGTCATGAGCATTGCAACATCATT 59.840 37.500 16.25 4.49 0.00 2.57
5301 9732 4.503007 GTCATGAGCATTGCAACATCATTC 59.497 41.667 16.25 10.89 0.00 2.67
5302 9733 4.158764 TCATGAGCATTGCAACATCATTCA 59.841 37.500 16.25 3.48 0.00 2.57
5303 9734 4.729227 TGAGCATTGCAACATCATTCAT 57.271 36.364 11.91 0.00 0.00 2.57
5304 9735 5.838531 TGAGCATTGCAACATCATTCATA 57.161 34.783 11.91 0.00 0.00 2.15
5305 9736 5.827666 TGAGCATTGCAACATCATTCATAG 58.172 37.500 11.91 0.00 0.00 2.23
5306 9737 5.196341 AGCATTGCAACATCATTCATAGG 57.804 39.130 11.91 0.00 0.00 2.57
5307 9738 3.739300 GCATTGCAACATCATTCATAGGC 59.261 43.478 0.00 0.00 0.00 3.93
5308 9739 4.500887 GCATTGCAACATCATTCATAGGCT 60.501 41.667 0.00 0.00 0.00 4.58
5309 9740 5.278610 GCATTGCAACATCATTCATAGGCTA 60.279 40.000 0.00 0.00 0.00 3.93
5310 9741 5.756195 TTGCAACATCATTCATAGGCTAC 57.244 39.130 0.00 0.00 0.00 3.58
5311 9742 4.779696 TGCAACATCATTCATAGGCTACA 58.220 39.130 0.00 0.00 0.00 2.74
5312 9743 5.192176 TGCAACATCATTCATAGGCTACAA 58.808 37.500 0.00 0.00 0.00 2.41
5313 9744 5.066375 TGCAACATCATTCATAGGCTACAAC 59.934 40.000 0.00 0.00 0.00 3.32
5314 9745 5.066375 GCAACATCATTCATAGGCTACAACA 59.934 40.000 0.00 0.00 0.00 3.33
5315 9746 6.238842 GCAACATCATTCATAGGCTACAACAT 60.239 38.462 0.00 0.00 0.00 2.71
5316 9747 7.358066 CAACATCATTCATAGGCTACAACATC 58.642 38.462 0.00 0.00 0.00 3.06
5317 9748 6.594744 ACATCATTCATAGGCTACAACATCA 58.405 36.000 0.00 0.00 0.00 3.07
5318 9749 7.229308 ACATCATTCATAGGCTACAACATCAT 58.771 34.615 0.00 0.00 0.00 2.45
5319 9750 7.722728 ACATCATTCATAGGCTACAACATCATT 59.277 33.333 0.00 0.00 0.00 2.57
5320 9751 7.734924 TCATTCATAGGCTACAACATCATTC 57.265 36.000 0.00 0.00 0.00 2.67
5321 9752 7.281841 TCATTCATAGGCTACAACATCATTCA 58.718 34.615 0.00 0.00 0.00 2.57
5322 9753 6.925610 TTCATAGGCTACAACATCATTCAC 57.074 37.500 0.00 0.00 0.00 3.18
5323 9754 5.368145 TCATAGGCTACAACATCATTCACC 58.632 41.667 0.00 0.00 0.00 4.02
5324 9755 3.719268 AGGCTACAACATCATTCACCA 57.281 42.857 0.00 0.00 0.00 4.17
5325 9756 3.614092 AGGCTACAACATCATTCACCAG 58.386 45.455 0.00 0.00 0.00 4.00
5326 9757 3.009473 AGGCTACAACATCATTCACCAGT 59.991 43.478 0.00 0.00 0.00 4.00
5327 9758 3.375299 GGCTACAACATCATTCACCAGTC 59.625 47.826 0.00 0.00 0.00 3.51
5328 9759 3.375299 GCTACAACATCATTCACCAGTCC 59.625 47.826 0.00 0.00 0.00 3.85
5329 9760 3.507162 ACAACATCATTCACCAGTCCA 57.493 42.857 0.00 0.00 0.00 4.02
5330 9761 3.831323 ACAACATCATTCACCAGTCCAA 58.169 40.909 0.00 0.00 0.00 3.53
5331 9762 3.569701 ACAACATCATTCACCAGTCCAAC 59.430 43.478 0.00 0.00 0.00 3.77
5332 9763 3.507162 ACATCATTCACCAGTCCAACA 57.493 42.857 0.00 0.00 0.00 3.33
5333 9764 3.415212 ACATCATTCACCAGTCCAACAG 58.585 45.455 0.00 0.00 0.00 3.16
5334 9765 3.181440 ACATCATTCACCAGTCCAACAGT 60.181 43.478 0.00 0.00 0.00 3.55
5335 9766 3.576078 TCATTCACCAGTCCAACAGTT 57.424 42.857 0.00 0.00 0.00 3.16
5336 9767 3.476552 TCATTCACCAGTCCAACAGTTC 58.523 45.455 0.00 0.00 0.00 3.01
5337 9768 3.136443 TCATTCACCAGTCCAACAGTTCT 59.864 43.478 0.00 0.00 0.00 3.01
5338 9769 4.346709 TCATTCACCAGTCCAACAGTTCTA 59.653 41.667 0.00 0.00 0.00 2.10
5339 9770 4.764050 TTCACCAGTCCAACAGTTCTAA 57.236 40.909 0.00 0.00 0.00 2.10
5340 9771 4.974645 TCACCAGTCCAACAGTTCTAAT 57.025 40.909 0.00 0.00 0.00 1.73
5341 9772 4.894784 TCACCAGTCCAACAGTTCTAATC 58.105 43.478 0.00 0.00 0.00 1.75
5342 9773 4.346709 TCACCAGTCCAACAGTTCTAATCA 59.653 41.667 0.00 0.00 0.00 2.57
5343 9774 5.013079 TCACCAGTCCAACAGTTCTAATCAT 59.987 40.000 0.00 0.00 0.00 2.45
5344 9775 5.707298 CACCAGTCCAACAGTTCTAATCATT 59.293 40.000 0.00 0.00 0.00 2.57
5345 9776 5.940470 ACCAGTCCAACAGTTCTAATCATTC 59.060 40.000 0.00 0.00 0.00 2.67
5346 9777 5.939883 CCAGTCCAACAGTTCTAATCATTCA 59.060 40.000 0.00 0.00 0.00 2.57
5347 9778 6.430925 CCAGTCCAACAGTTCTAATCATTCAA 59.569 38.462 0.00 0.00 0.00 2.69
5348 9779 7.040478 CCAGTCCAACAGTTCTAATCATTCAAA 60.040 37.037 0.00 0.00 0.00 2.69
5349 9780 8.517878 CAGTCCAACAGTTCTAATCATTCAAAT 58.482 33.333 0.00 0.00 0.00 2.32
5350 9781 9.082313 AGTCCAACAGTTCTAATCATTCAAATT 57.918 29.630 0.00 0.00 0.00 1.82
5351 9782 9.696917 GTCCAACAGTTCTAATCATTCAAATTT 57.303 29.630 0.00 0.00 0.00 1.82
5370 9801 9.859427 TCAAATTTTGAATTCATAGGCTACAAG 57.141 29.630 9.40 0.00 36.59 3.16
5371 9802 8.598075 CAAATTTTGAATTCATAGGCTACAAGC 58.402 33.333 9.40 0.00 41.46 4.01
5381 9812 2.679199 GCTACAAGCCGCTCTAACC 58.321 57.895 0.00 0.00 34.48 2.85
5382 9813 0.108329 GCTACAAGCCGCTCTAACCA 60.108 55.000 0.00 0.00 34.48 3.67
5383 9814 1.473434 GCTACAAGCCGCTCTAACCAT 60.473 52.381 0.00 0.00 34.48 3.55
5384 9815 2.906354 CTACAAGCCGCTCTAACCATT 58.094 47.619 0.00 0.00 0.00 3.16
5385 9816 1.739067 ACAAGCCGCTCTAACCATTC 58.261 50.000 0.00 0.00 0.00 2.67
5386 9817 1.003118 ACAAGCCGCTCTAACCATTCA 59.997 47.619 0.00 0.00 0.00 2.57
5387 9818 2.292267 CAAGCCGCTCTAACCATTCAT 58.708 47.619 0.00 0.00 0.00 2.57
5388 9819 1.959042 AGCCGCTCTAACCATTCATG 58.041 50.000 0.00 0.00 0.00 3.07
5389 9820 0.308993 GCCGCTCTAACCATTCATGC 59.691 55.000 0.00 0.00 0.00 4.06
5390 9821 1.959042 CCGCTCTAACCATTCATGCT 58.041 50.000 0.00 0.00 0.00 3.79
5391 9822 1.600957 CCGCTCTAACCATTCATGCTG 59.399 52.381 0.00 0.00 0.00 4.41
5392 9823 1.003116 CGCTCTAACCATTCATGCTGC 60.003 52.381 0.00 0.00 0.00 5.25
5393 9824 2.019249 GCTCTAACCATTCATGCTGCA 58.981 47.619 4.13 4.13 0.00 4.41
5394 9825 2.223433 GCTCTAACCATTCATGCTGCAC 60.223 50.000 3.57 0.00 0.00 4.57
5395 9826 3.011818 CTCTAACCATTCATGCTGCACA 58.988 45.455 3.57 0.00 0.00 4.57
5396 9827 2.749076 TCTAACCATTCATGCTGCACAC 59.251 45.455 3.57 0.00 0.00 3.82
5397 9828 1.330234 AACCATTCATGCTGCACACA 58.670 45.000 3.57 0.00 0.00 3.72
5398 9829 0.599558 ACCATTCATGCTGCACACAC 59.400 50.000 3.57 0.00 0.00 3.82
5399 9830 0.599060 CCATTCATGCTGCACACACA 59.401 50.000 3.57 0.00 0.00 3.72
5400 9831 1.000052 CCATTCATGCTGCACACACAA 60.000 47.619 3.57 0.00 0.00 3.33
5401 9832 2.055838 CATTCATGCTGCACACACAAC 58.944 47.619 3.57 0.00 0.00 3.32
5402 9833 1.101331 TTCATGCTGCACACACAACA 58.899 45.000 3.57 0.00 0.00 3.33
5403 9834 0.381445 TCATGCTGCACACACAACAC 59.619 50.000 3.57 0.00 0.00 3.32
5404 9835 0.595567 CATGCTGCACACACAACACC 60.596 55.000 3.57 0.00 0.00 4.16
5405 9836 1.036481 ATGCTGCACACACAACACCA 61.036 50.000 3.57 0.00 0.00 4.17
5406 9837 1.064621 GCTGCACACACAACACCAG 59.935 57.895 0.00 0.00 0.00 4.00
5407 9838 1.064621 CTGCACACACAACACCAGC 59.935 57.895 0.00 0.00 0.00 4.85
5408 9839 2.340453 CTGCACACACAACACCAGCC 62.340 60.000 0.00 0.00 0.00 4.85
5409 9840 2.120909 GCACACACAACACCAGCCT 61.121 57.895 0.00 0.00 0.00 4.58
5410 9841 0.817634 GCACACACAACACCAGCCTA 60.818 55.000 0.00 0.00 0.00 3.93
5411 9842 0.944386 CACACACAACACCAGCCTAC 59.056 55.000 0.00 0.00 0.00 3.18
5412 9843 0.544223 ACACACAACACCAGCCTACA 59.456 50.000 0.00 0.00 0.00 2.74
5413 9844 1.065053 ACACACAACACCAGCCTACAA 60.065 47.619 0.00 0.00 0.00 2.41
5414 9845 1.603802 CACACAACACCAGCCTACAAG 59.396 52.381 0.00 0.00 0.00 3.16
5415 9846 1.488812 ACACAACACCAGCCTACAAGA 59.511 47.619 0.00 0.00 0.00 3.02
5416 9847 2.092646 ACACAACACCAGCCTACAAGAA 60.093 45.455 0.00 0.00 0.00 2.52
5417 9848 2.290641 CACAACACCAGCCTACAAGAAC 59.709 50.000 0.00 0.00 0.00 3.01
5418 9849 1.531149 CAACACCAGCCTACAAGAACG 59.469 52.381 0.00 0.00 0.00 3.95
5419 9850 1.045407 ACACCAGCCTACAAGAACGA 58.955 50.000 0.00 0.00 0.00 3.85
5420 9851 1.000955 ACACCAGCCTACAAGAACGAG 59.999 52.381 0.00 0.00 0.00 4.18
5421 9852 0.037232 ACCAGCCTACAAGAACGAGC 60.037 55.000 0.00 0.00 0.00 5.03
5422 9853 0.037326 CCAGCCTACAAGAACGAGCA 60.037 55.000 0.00 0.00 0.00 4.26
5423 9854 1.354040 CAGCCTACAAGAACGAGCAG 58.646 55.000 0.00 0.00 0.00 4.24
5424 9855 0.969894 AGCCTACAAGAACGAGCAGT 59.030 50.000 0.00 0.00 0.00 4.40
5426 9857 2.561419 AGCCTACAAGAACGAGCAGTTA 59.439 45.455 0.00 0.00 44.35 2.24
5427 9858 2.666994 GCCTACAAGAACGAGCAGTTAC 59.333 50.000 0.00 0.00 44.35 2.50
5428 9859 3.614390 GCCTACAAGAACGAGCAGTTACT 60.614 47.826 0.00 0.00 44.35 2.24
5429 9860 4.380233 GCCTACAAGAACGAGCAGTTACTA 60.380 45.833 0.00 0.00 44.35 1.82
5430 9861 5.094134 CCTACAAGAACGAGCAGTTACTAC 58.906 45.833 0.00 0.00 44.35 2.73
5431 9862 3.910648 ACAAGAACGAGCAGTTACTACC 58.089 45.455 0.00 0.00 44.35 3.18
5432 9863 3.573110 ACAAGAACGAGCAGTTACTACCT 59.427 43.478 0.00 0.00 44.35 3.08
5433 9864 4.167268 CAAGAACGAGCAGTTACTACCTC 58.833 47.826 0.00 3.15 44.35 3.85
5434 9865 3.418995 AGAACGAGCAGTTACTACCTCA 58.581 45.455 11.09 0.00 44.35 3.86
5435 9866 4.017808 AGAACGAGCAGTTACTACCTCAT 58.982 43.478 11.09 1.96 44.35 2.90
5436 9867 3.784701 ACGAGCAGTTACTACCTCATG 57.215 47.619 11.09 0.00 0.00 3.07
5437 9868 3.353557 ACGAGCAGTTACTACCTCATGA 58.646 45.455 11.09 0.00 0.00 3.07
5438 9869 3.378742 ACGAGCAGTTACTACCTCATGAG 59.621 47.826 16.24 16.24 0.00 2.90
5492 9923 6.430451 CAGTTTGACATGTCAGTTTCCTTAC 58.570 40.000 26.48 15.13 41.13 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.604174 AAAAGCTCGTTGCCCGTCG 61.604 57.895 0.00 0.00 44.23 5.12
30 31 9.177608 TGTTCTGGTTTCTCCTCATTATTATTG 57.822 33.333 0.00 0.00 37.07 1.90
55 56 3.370840 TGATTCATCCCACCCTTTCTG 57.629 47.619 0.00 0.00 0.00 3.02
58 59 3.290710 CGAATGATTCATCCCACCCTTT 58.709 45.455 5.95 0.00 0.00 3.11
59 60 2.423373 CCGAATGATTCATCCCACCCTT 60.423 50.000 5.95 0.00 0.00 3.95
60 61 1.143684 CCGAATGATTCATCCCACCCT 59.856 52.381 5.95 0.00 0.00 4.34
64 65 1.490069 TGCTCCGAATGATTCATCCCA 59.510 47.619 5.95 0.00 0.00 4.37
65 66 2.260844 TGCTCCGAATGATTCATCCC 57.739 50.000 5.95 0.00 0.00 3.85
156 176 4.916041 TCTTTATGCTATCCATCCCCTG 57.084 45.455 0.00 0.00 35.34 4.45
169 189 1.297893 CAGCCGCGCTTCTTTATGC 60.298 57.895 5.56 0.00 36.40 3.14
294 314 8.820628 TTCGTTTTCGCATCTTCTAAAATATG 57.179 30.769 0.00 0.00 43.73 1.78
301 321 7.398746 CACATAATTCGTTTTCGCATCTTCTA 58.601 34.615 0.00 0.00 43.73 2.10
303 323 5.053025 GCACATAATTCGTTTTCGCATCTTC 60.053 40.000 0.00 0.00 43.73 2.87
304 324 4.793216 GCACATAATTCGTTTTCGCATCTT 59.207 37.500 0.00 0.00 43.73 2.40
305 325 4.142708 TGCACATAATTCGTTTTCGCATCT 60.143 37.500 0.00 0.00 43.73 2.90
306 326 4.094911 TGCACATAATTCGTTTTCGCATC 58.905 39.130 0.00 0.00 43.73 3.91
307 327 4.090138 TGCACATAATTCGTTTTCGCAT 57.910 36.364 0.00 0.00 43.73 4.73
308 328 3.544356 TGCACATAATTCGTTTTCGCA 57.456 38.095 0.00 0.00 43.73 5.10
378 398 3.185330 GGAGGAAATCGACTTTCGGTAC 58.815 50.000 11.57 0.00 43.57 3.34
382 402 1.661112 GCTGGAGGAAATCGACTTTCG 59.339 52.381 11.57 0.00 43.57 3.46
394 414 1.762370 TGCGATCTTAATGCTGGAGGA 59.238 47.619 0.00 0.00 0.00 3.71
395 415 2.245159 TGCGATCTTAATGCTGGAGG 57.755 50.000 0.00 0.00 0.00 4.30
396 416 2.547211 CCTTGCGATCTTAATGCTGGAG 59.453 50.000 0.00 0.00 0.00 3.86
474 554 3.323403 CCCCAGGCTTTTTATTGTTGTGA 59.677 43.478 0.00 0.00 0.00 3.58
484 564 2.009681 CTTACACCCCCAGGCTTTTT 57.990 50.000 0.00 0.00 36.11 1.94
583 3946 8.811017 TCTCTTATATCTCATGCTTTCCCTAAG 58.189 37.037 0.00 0.00 36.90 2.18
615 3979 5.476945 GGGCCTAAAGTCTTTTCAGATTTCA 59.523 40.000 0.84 0.00 28.98 2.69
627 3991 0.329596 CCAAGCTGGGCCTAAAGTCT 59.670 55.000 4.53 0.00 32.67 3.24
633 3997 3.399181 CCGACCAAGCTGGGCCTA 61.399 66.667 7.20 0.00 44.91 3.93
658 4022 2.743664 CGAATTCTGTCTGTTGCATGGA 59.256 45.455 3.52 0.00 0.00 3.41
682 4047 3.294493 TTTGAAGTGGGCTGCCGC 61.294 61.111 13.40 8.19 0.00 6.53
706 4171 0.322277 CTCTGTCTGTTGCATGGGCT 60.322 55.000 0.00 0.00 41.91 5.19
799 4264 3.204467 TTTGCTTGGGCCGGCTAGT 62.204 57.895 28.56 0.00 37.74 2.57
801 4266 2.675075 GTTTGCTTGGGCCGGCTA 60.675 61.111 28.56 13.55 37.74 3.93
802 4267 4.912395 TGTTTGCTTGGGCCGGCT 62.912 61.111 28.56 0.00 37.74 5.52
803 4268 4.362476 CTGTTTGCTTGGGCCGGC 62.362 66.667 21.18 21.18 37.74 6.13
804 4269 2.912025 ACTGTTTGCTTGGGCCGG 60.912 61.111 0.00 0.00 37.74 6.13
805 4270 2.336088 CACTGTTTGCTTGGGCCG 59.664 61.111 0.00 0.00 37.74 6.13
806 4271 2.736531 CCACTGTTTGCTTGGGCC 59.263 61.111 0.00 0.00 37.74 5.80
807 4272 2.736531 CCCACTGTTTGCTTGGGC 59.263 61.111 0.00 0.00 43.69 5.36
809 4274 0.530431 GCAACCCACTGTTTGCTTGG 60.530 55.000 8.11 0.00 34.00 3.61
810 4275 0.175302 TGCAACCCACTGTTTGCTTG 59.825 50.000 14.60 0.19 34.00 4.01
811 4276 0.175531 GTGCAACCCACTGTTTGCTT 59.824 50.000 14.60 0.00 41.35 3.91
812 4277 1.815866 GTGCAACCCACTGTTTGCT 59.184 52.632 14.60 0.00 41.35 3.91
813 4278 4.418337 GTGCAACCCACTGTTTGC 57.582 55.556 8.38 8.38 41.35 3.68
824 4289 0.040425 CTGGTTTACGCTGGTGCAAC 60.040 55.000 0.00 0.00 39.64 4.17
825 4290 1.791103 GCTGGTTTACGCTGGTGCAA 61.791 55.000 0.00 0.00 39.64 4.08
826 4291 2.258013 GCTGGTTTACGCTGGTGCA 61.258 57.895 0.00 0.00 39.64 4.57
827 4292 2.561373 GCTGGTTTACGCTGGTGC 59.439 61.111 0.00 0.00 0.00 5.01
828 4293 2.677003 CGGCTGGTTTACGCTGGTG 61.677 63.158 0.00 0.00 0.00 4.17
829 4294 2.358247 CGGCTGGTTTACGCTGGT 60.358 61.111 0.00 0.00 0.00 4.00
830 4295 3.124921 CCGGCTGGTTTACGCTGG 61.125 66.667 2.29 0.00 45.37 4.85
831 4296 3.124921 CCCGGCTGGTTTACGCTG 61.125 66.667 11.58 0.00 0.00 5.18
834 4299 4.708386 TGGCCCGGCTGGTTTACG 62.708 66.667 11.58 0.00 36.04 3.18
835 4300 3.060000 GTGGCCCGGCTGGTTTAC 61.060 66.667 11.58 2.10 36.04 2.01
836 4301 3.253838 AGTGGCCCGGCTGGTTTA 61.254 61.111 11.58 0.00 36.04 2.01
837 4302 4.660938 GAGTGGCCCGGCTGGTTT 62.661 66.667 11.58 0.00 36.04 3.27
851 4316 0.038526 CACGAAGCTAACACCCGAGT 60.039 55.000 0.00 0.00 0.00 4.18
874 4339 2.290960 ACCCCTGGATTTCTTTCTTCGG 60.291 50.000 0.00 0.00 0.00 4.30
909 4374 4.112341 CTGCGCCTTGCTGCTTCC 62.112 66.667 4.18 0.00 46.63 3.46
965 4433 0.982704 TTCGATTTGGTTCCGGGGTA 59.017 50.000 0.00 0.00 0.00 3.69
968 4436 1.068816 GTTGTTCGATTTGGTTCCGGG 60.069 52.381 0.00 0.00 0.00 5.73
970 4438 1.068816 GGGTTGTTCGATTTGGTTCCG 60.069 52.381 0.00 0.00 0.00 4.30
1135 4606 2.795329 CCAAAAGGGAGCTAGCTTGAA 58.205 47.619 20.42 0.00 40.01 2.69
1183 4654 3.490419 CGACAGGTTAACCCTAGATTCGG 60.490 52.174 21.30 2.75 43.86 4.30
1201 4672 2.674420 CCCTCCCTATAGTTTCCGACA 58.326 52.381 0.00 0.00 0.00 4.35
1527 5039 3.126858 GCTCAGGTGCGTAAATCAATTGA 59.873 43.478 11.26 11.26 0.00 2.57
1705 5236 7.039714 TCGTCGTATATAGTACTCCCTCTGTTA 60.040 40.741 0.00 0.00 0.00 2.41
1805 5336 2.224606 CTTTGGTCAGTGACATGTGCT 58.775 47.619 24.20 0.00 33.68 4.40
1905 5436 7.496591 ACAAATGAAAGTGTGAAATCAAGCATT 59.503 29.630 0.00 0.00 0.00 3.56
1979 5742 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
1980 5743 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1981 5744 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1982 5745 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1983 5746 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1984 5747 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1985 5748 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1986 5749 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2001 5764 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
2002 5765 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
2003 5766 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
2004 5767 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
2005 5768 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
2006 5769 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
2007 5770 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
2008 5771 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
2009 5772 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
2010 5773 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
2011 5774 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
2012 5775 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
2013 5776 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
2014 5777 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
2015 5778 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
2016 5779 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
2017 5780 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
2018 5781 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
2019 5782 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
2020 5783 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
2021 5784 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
2022 5785 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
2023 5786 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
2024 5787 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
2025 5788 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
2026 5789 8.467598 ACATCTATATACATCCGTATGTGGTTC 58.532 37.037 3.56 0.00 45.99 3.62
2027 5790 8.362464 ACATCTATATACATCCGTATGTGGTT 57.638 34.615 3.56 0.00 45.99 3.67
2028 5791 7.956328 ACATCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2054 5817 8.859156 GCAAAATGAATGAATCTACGCTTAAAA 58.141 29.630 0.00 0.00 0.00 1.52
2055 5818 8.243426 AGCAAAATGAATGAATCTACGCTTAAA 58.757 29.630 0.00 0.00 0.00 1.52
2056 5819 7.761409 AGCAAAATGAATGAATCTACGCTTAA 58.239 30.769 0.00 0.00 0.00 1.85
2057 5820 7.320443 AGCAAAATGAATGAATCTACGCTTA 57.680 32.000 0.00 0.00 0.00 3.09
2058 5821 6.199937 AGCAAAATGAATGAATCTACGCTT 57.800 33.333 0.00 0.00 0.00 4.68
2059 5822 5.220931 GGAGCAAAATGAATGAATCTACGCT 60.221 40.000 0.00 0.00 0.00 5.07
2060 5823 4.972440 GGAGCAAAATGAATGAATCTACGC 59.028 41.667 0.00 0.00 0.00 4.42
2061 5824 5.200454 CGGAGCAAAATGAATGAATCTACG 58.800 41.667 0.00 0.00 0.00 3.51
2062 5825 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2063 5826 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2064 5827 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2065 5828 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2066 5829 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2067 5830 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2068 5831 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2069 5832 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2070 5833 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
2071 5834 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
2072 5835 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2073 5836 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2074 5837 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2075 5838 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2076 5839 3.704566 AGATGGACTACATACGGAGCAAA 59.295 43.478 0.00 0.00 40.72 3.68
2077 5840 3.296854 AGATGGACTACATACGGAGCAA 58.703 45.455 0.00 0.00 40.72 3.91
2078 5841 2.945456 AGATGGACTACATACGGAGCA 58.055 47.619 0.00 0.00 40.72 4.26
2079 5842 4.073549 ACTAGATGGACTACATACGGAGC 58.926 47.826 0.00 0.00 40.72 4.70
2080 5843 5.614923 CACTAGATGGACTACATACGGAG 57.385 47.826 0.00 0.00 40.72 4.63
2094 5857 8.006298 AGACTTTGTAGAGATTCCACTAGATG 57.994 38.462 0.00 0.00 0.00 2.90
2095 5858 8.602472 AAGACTTTGTAGAGATTCCACTAGAT 57.398 34.615 0.00 0.00 0.00 1.98
2096 5859 9.702253 ATAAGACTTTGTAGAGATTCCACTAGA 57.298 33.333 0.00 0.00 0.00 2.43
2111 5874 7.985752 CCTCCGTTCCTAAATATAAGACTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2112 5875 7.441458 CCCTCCGTTCCTAAATATAAGACTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2113 5876 7.346436 TCCCTCCGTTCCTAAATATAAGACTTT 59.654 37.037 0.00 0.00 0.00 2.66
2114 5877 6.842807 TCCCTCCGTTCCTAAATATAAGACTT 59.157 38.462 0.00 0.00 0.00 3.01
2115 5878 6.379579 TCCCTCCGTTCCTAAATATAAGACT 58.620 40.000 0.00 0.00 0.00 3.24
2116 5879 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
2117 5880 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
2118 5881 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2119 5882 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2120 5883 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2121 5884 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2122 5885 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2123 5886 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2124 5887 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2125 5888 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2126 5889 3.525199 AGTAACTACTCCCTCCGTTCCTA 59.475 47.826 0.00 0.00 0.00 2.94
2127 5890 2.311243 AGTAACTACTCCCTCCGTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
2128 5891 2.732763 AGTAACTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
2129 5892 3.119209 CCAAGTAACTACTCCCTCCGTTC 60.119 52.174 0.00 0.00 34.99 3.95
2130 5893 2.830321 CCAAGTAACTACTCCCTCCGTT 59.170 50.000 0.00 0.00 34.99 4.44
2131 5894 2.042162 TCCAAGTAACTACTCCCTCCGT 59.958 50.000 0.00 0.00 34.99 4.69
2132 5895 2.688958 CTCCAAGTAACTACTCCCTCCG 59.311 54.545 0.00 0.00 34.99 4.63
2133 5896 2.431419 GCTCCAAGTAACTACTCCCTCC 59.569 54.545 0.00 0.00 34.99 4.30
2134 5897 3.097614 TGCTCCAAGTAACTACTCCCTC 58.902 50.000 0.00 0.00 34.99 4.30
2135 5898 2.832733 GTGCTCCAAGTAACTACTCCCT 59.167 50.000 0.00 0.00 34.99 4.20
2136 5899 2.565834 TGTGCTCCAAGTAACTACTCCC 59.434 50.000 0.00 0.00 34.99 4.30
2137 5900 3.258622 ACTGTGCTCCAAGTAACTACTCC 59.741 47.826 0.00 0.00 34.99 3.85
2138 5901 4.522722 ACTGTGCTCCAAGTAACTACTC 57.477 45.455 0.00 0.00 34.99 2.59
2139 5902 4.344102 TGAACTGTGCTCCAAGTAACTACT 59.656 41.667 0.00 0.00 38.39 2.57
2165 5928 7.746475 CCTTGAAATTTTCAACTAGACGATGAC 59.254 37.037 18.29 0.00 44.21 3.06
2228 5991 1.609555 GGGCTGTGAGGAGTATAGTCG 59.390 57.143 1.45 0.00 0.00 4.18
2368 6131 7.620880 AGCCAGTACAAACATATGTCTTTCTA 58.379 34.615 9.23 0.00 34.75 2.10
2753 6523 7.566858 ACAAAATGAATTCGCATGTAAGAAC 57.433 32.000 0.04 0.00 0.00 3.01
2757 6527 8.803201 TGTAAACAAAATGAATTCGCATGTAA 57.197 26.923 0.04 0.00 0.00 2.41
3093 6868 1.283029 CCTGATGGGTGGAGTTGTGAT 59.717 52.381 0.00 0.00 0.00 3.06
3256 7031 4.511826 GGGCAGTGTATATGTGCTTAACTC 59.488 45.833 0.00 0.00 37.37 3.01
3277 7052 1.302949 ATGGACGGTGAACCATGGG 59.697 57.895 18.09 0.00 44.01 4.00
3356 7132 6.072175 CGAACAACCATCTTTAAAATCCAGGA 60.072 38.462 0.00 0.00 0.00 3.86
3477 7253 4.445453 CACAGCTGAGCATACATCCTTAA 58.555 43.478 23.35 0.00 0.00 1.85
3545 7321 8.291740 GCTATTGCCAACAATTTCTTCAAAAAT 58.708 29.630 0.00 0.00 44.21 1.82
3744 7520 5.123186 TCACAAACTTATACAAGATTGGCGG 59.877 40.000 8.40 0.00 44.55 6.13
3819 7801 8.892723 TGCAGGTTCAGTATTCAACATTATAAG 58.107 33.333 0.00 0.00 0.00 1.73
4181 8570 4.144297 TGTGAAGGTTAAGCAGCATCTTT 58.856 39.130 7.52 0.00 0.00 2.52
4324 8749 5.527214 TCGACTTTCACCCTGCATTATATTG 59.473 40.000 0.00 0.00 0.00 1.90
4629 9055 3.969802 GCTGCGTTGTGGCAAGCT 61.970 61.111 0.00 0.00 43.39 3.74
4630 9056 3.771568 TTGCTGCGTTGTGGCAAGC 62.772 57.895 0.00 0.00 43.39 4.01
4632 9058 2.412525 CTTGCTGCGTTGTGGCAA 59.587 55.556 0.00 0.00 43.39 4.52
4861 9288 2.760634 TTTTCGCTGCCATCTCACTA 57.239 45.000 0.00 0.00 0.00 2.74
4984 9411 3.847780 AGGGGCACTGTACAATAAACCTA 59.152 43.478 0.00 0.00 0.00 3.08
5132 9563 3.928375 CCTGGTGCATTAAATTTCTGTGC 59.072 43.478 12.73 12.73 36.39 4.57
5149 9580 4.750289 ACTGGTGAAGTCCCTGGT 57.250 55.556 0.00 0.00 31.64 4.00
5215 9646 2.749076 GTGTGCAGCATGAATGGTTAGA 59.251 45.455 0.00 0.00 39.69 2.10
5272 9703 2.993937 TGCAATGCTCATGACTCATGA 58.006 42.857 18.74 18.74 46.84 3.07
5273 9704 3.119637 TGTTGCAATGCTCATGACTCATG 60.120 43.478 12.25 12.25 42.60 3.07
5274 9705 3.086282 TGTTGCAATGCTCATGACTCAT 58.914 40.909 6.82 0.00 0.00 2.90
5275 9706 2.506444 TGTTGCAATGCTCATGACTCA 58.494 42.857 6.82 0.00 0.00 3.41
5276 9707 3.128068 TGATGTTGCAATGCTCATGACTC 59.872 43.478 17.33 7.79 0.00 3.36
5277 9708 3.086282 TGATGTTGCAATGCTCATGACT 58.914 40.909 17.33 0.00 0.00 3.41
5278 9709 3.497297 TGATGTTGCAATGCTCATGAC 57.503 42.857 17.33 7.90 0.00 3.06
5279 9710 4.158764 TGAATGATGTTGCAATGCTCATGA 59.841 37.500 17.33 11.66 0.00 3.07
5280 9711 4.429108 TGAATGATGTTGCAATGCTCATG 58.571 39.130 17.33 0.00 0.00 3.07
5281 9712 4.729227 TGAATGATGTTGCAATGCTCAT 57.271 36.364 6.82 11.14 0.00 2.90
5282 9713 4.729227 ATGAATGATGTTGCAATGCTCA 57.271 36.364 6.82 6.71 0.00 4.26
5283 9714 5.220381 CCTATGAATGATGTTGCAATGCTC 58.780 41.667 6.82 0.48 0.00 4.26
5284 9715 4.500887 GCCTATGAATGATGTTGCAATGCT 60.501 41.667 6.82 0.00 0.00 3.79
5285 9716 3.739300 GCCTATGAATGATGTTGCAATGC 59.261 43.478 0.59 0.00 0.00 3.56
5286 9717 5.196341 AGCCTATGAATGATGTTGCAATG 57.804 39.130 0.59 0.00 0.00 2.82
5287 9718 5.829391 TGTAGCCTATGAATGATGTTGCAAT 59.171 36.000 0.59 0.00 0.00 3.56
5288 9719 5.192176 TGTAGCCTATGAATGATGTTGCAA 58.808 37.500 0.00 0.00 0.00 4.08
5289 9720 4.779696 TGTAGCCTATGAATGATGTTGCA 58.220 39.130 0.00 0.00 0.00 4.08
5290 9721 5.066375 TGTTGTAGCCTATGAATGATGTTGC 59.934 40.000 0.00 0.00 0.00 4.17
5291 9722 6.682423 TGTTGTAGCCTATGAATGATGTTG 57.318 37.500 0.00 0.00 0.00 3.33
5292 9723 7.056006 TGATGTTGTAGCCTATGAATGATGTT 58.944 34.615 0.00 0.00 0.00 2.71
5293 9724 6.594744 TGATGTTGTAGCCTATGAATGATGT 58.405 36.000 0.00 0.00 0.00 3.06
5294 9725 7.683437 ATGATGTTGTAGCCTATGAATGATG 57.317 36.000 0.00 0.00 0.00 3.07
5295 9726 7.940688 TGAATGATGTTGTAGCCTATGAATGAT 59.059 33.333 0.00 0.00 0.00 2.45
5296 9727 7.227314 GTGAATGATGTTGTAGCCTATGAATGA 59.773 37.037 0.00 0.00 0.00 2.57
5297 9728 7.358066 GTGAATGATGTTGTAGCCTATGAATG 58.642 38.462 0.00 0.00 0.00 2.67
5298 9729 6.488006 GGTGAATGATGTTGTAGCCTATGAAT 59.512 38.462 0.00 0.00 0.00 2.57
5299 9730 5.822519 GGTGAATGATGTTGTAGCCTATGAA 59.177 40.000 0.00 0.00 0.00 2.57
5300 9731 5.104569 TGGTGAATGATGTTGTAGCCTATGA 60.105 40.000 0.00 0.00 0.00 2.15
5301 9732 5.125356 TGGTGAATGATGTTGTAGCCTATG 58.875 41.667 0.00 0.00 0.00 2.23
5302 9733 5.104360 ACTGGTGAATGATGTTGTAGCCTAT 60.104 40.000 0.00 0.00 0.00 2.57
5303 9734 4.225042 ACTGGTGAATGATGTTGTAGCCTA 59.775 41.667 0.00 0.00 0.00 3.93
5304 9735 3.009473 ACTGGTGAATGATGTTGTAGCCT 59.991 43.478 0.00 0.00 0.00 4.58
5305 9736 3.347216 ACTGGTGAATGATGTTGTAGCC 58.653 45.455 0.00 0.00 0.00 3.93
5306 9737 3.375299 GGACTGGTGAATGATGTTGTAGC 59.625 47.826 0.00 0.00 0.00 3.58
5307 9738 4.578871 TGGACTGGTGAATGATGTTGTAG 58.421 43.478 0.00 0.00 0.00 2.74
5308 9739 4.632327 TGGACTGGTGAATGATGTTGTA 57.368 40.909 0.00 0.00 0.00 2.41
5309 9740 3.507162 TGGACTGGTGAATGATGTTGT 57.493 42.857 0.00 0.00 0.00 3.32
5310 9741 3.569277 TGTTGGACTGGTGAATGATGTTG 59.431 43.478 0.00 0.00 0.00 3.33
5311 9742 3.822735 CTGTTGGACTGGTGAATGATGTT 59.177 43.478 0.00 0.00 0.00 2.71
5312 9743 3.181440 ACTGTTGGACTGGTGAATGATGT 60.181 43.478 0.00 0.00 0.00 3.06
5313 9744 3.415212 ACTGTTGGACTGGTGAATGATG 58.585 45.455 0.00 0.00 0.00 3.07
5314 9745 3.795688 ACTGTTGGACTGGTGAATGAT 57.204 42.857 0.00 0.00 0.00 2.45
5315 9746 3.136443 AGAACTGTTGGACTGGTGAATGA 59.864 43.478 0.00 0.00 0.00 2.57
5316 9747 3.480470 AGAACTGTTGGACTGGTGAATG 58.520 45.455 0.00 0.00 0.00 2.67
5317 9748 3.864789 AGAACTGTTGGACTGGTGAAT 57.135 42.857 0.00 0.00 0.00 2.57
5318 9749 4.764050 TTAGAACTGTTGGACTGGTGAA 57.236 40.909 0.00 0.00 0.00 3.18
5319 9750 4.346709 TGATTAGAACTGTTGGACTGGTGA 59.653 41.667 0.00 0.00 0.00 4.02
5320 9751 4.641396 TGATTAGAACTGTTGGACTGGTG 58.359 43.478 0.00 0.00 0.00 4.17
5321 9752 4.974645 TGATTAGAACTGTTGGACTGGT 57.025 40.909 0.00 0.00 0.00 4.00
5322 9753 5.939883 TGAATGATTAGAACTGTTGGACTGG 59.060 40.000 0.00 0.00 0.00 4.00
5323 9754 7.439157 TTGAATGATTAGAACTGTTGGACTG 57.561 36.000 0.00 0.00 0.00 3.51
5324 9755 8.641498 ATTTGAATGATTAGAACTGTTGGACT 57.359 30.769 0.00 0.00 0.00 3.85
5325 9756 9.696917 AAATTTGAATGATTAGAACTGTTGGAC 57.303 29.630 0.00 0.00 0.00 4.02
5344 9775 9.859427 CTTGTAGCCTATGAATTCAAAATTTGA 57.141 29.630 13.09 4.03 38.04 2.69
5345 9776 8.598075 GCTTGTAGCCTATGAATTCAAAATTTG 58.402 33.333 13.09 0.00 34.48 2.32
5346 9777 8.707938 GCTTGTAGCCTATGAATTCAAAATTT 57.292 30.769 13.09 0.00 34.48 1.82
5363 9794 0.108329 TGGTTAGAGCGGCTTGTAGC 60.108 55.000 2.97 1.33 41.46 3.58
5364 9795 2.604046 ATGGTTAGAGCGGCTTGTAG 57.396 50.000 2.97 0.00 0.00 2.74
5365 9796 2.235155 TGAATGGTTAGAGCGGCTTGTA 59.765 45.455 2.97 0.00 0.00 2.41
5366 9797 1.003118 TGAATGGTTAGAGCGGCTTGT 59.997 47.619 2.97 0.00 0.00 3.16
5367 9798 1.737838 TGAATGGTTAGAGCGGCTTG 58.262 50.000 2.97 0.00 0.00 4.01
5368 9799 2.292267 CATGAATGGTTAGAGCGGCTT 58.708 47.619 2.97 0.00 0.00 4.35
5369 9800 1.959042 CATGAATGGTTAGAGCGGCT 58.041 50.000 0.00 0.00 0.00 5.52
5370 9801 0.308993 GCATGAATGGTTAGAGCGGC 59.691 55.000 0.00 0.00 0.00 6.53
5371 9802 1.600957 CAGCATGAATGGTTAGAGCGG 59.399 52.381 0.00 0.00 39.69 5.52
5372 9803 1.003116 GCAGCATGAATGGTTAGAGCG 60.003 52.381 0.00 0.00 39.69 5.03
5373 9804 2.019249 TGCAGCATGAATGGTTAGAGC 58.981 47.619 0.00 0.00 39.69 4.09
5374 9805 3.011818 TGTGCAGCATGAATGGTTAGAG 58.988 45.455 0.00 0.00 39.69 2.43
5375 9806 2.749076 GTGTGCAGCATGAATGGTTAGA 59.251 45.455 0.00 0.00 39.69 2.10
5376 9807 2.488937 TGTGTGCAGCATGAATGGTTAG 59.511 45.455 0.00 0.00 39.69 2.34
5377 9808 2.228582 GTGTGTGCAGCATGAATGGTTA 59.771 45.455 0.00 0.00 39.69 2.85
5378 9809 1.000060 GTGTGTGCAGCATGAATGGTT 60.000 47.619 0.00 0.00 39.69 3.67
5379 9810 0.599558 GTGTGTGCAGCATGAATGGT 59.400 50.000 0.00 0.00 39.69 3.55
5380 9811 0.599060 TGTGTGTGCAGCATGAATGG 59.401 50.000 0.00 0.00 39.69 3.16
5381 9812 2.055838 GTTGTGTGTGCAGCATGAATG 58.944 47.619 0.00 0.00 39.69 2.67
5382 9813 1.682323 TGTTGTGTGTGCAGCATGAAT 59.318 42.857 0.00 0.00 39.69 2.57
5383 9814 1.101331 TGTTGTGTGTGCAGCATGAA 58.899 45.000 0.00 0.00 39.69 2.57
5384 9815 0.381445 GTGTTGTGTGTGCAGCATGA 59.619 50.000 0.00 0.00 39.69 3.07
5385 9816 0.595567 GGTGTTGTGTGTGCAGCATG 60.596 55.000 0.00 0.00 40.87 4.06
5386 9817 1.036481 TGGTGTTGTGTGTGCAGCAT 61.036 50.000 0.00 0.00 35.99 3.79
5387 9818 1.655885 CTGGTGTTGTGTGTGCAGCA 61.656 55.000 0.00 0.00 38.14 4.41
5388 9819 1.064621 CTGGTGTTGTGTGTGCAGC 59.935 57.895 0.00 0.00 0.00 5.25
5389 9820 1.064621 GCTGGTGTTGTGTGTGCAG 59.935 57.895 0.00 0.00 0.00 4.41
5390 9821 2.413963 GGCTGGTGTTGTGTGTGCA 61.414 57.895 0.00 0.00 0.00 4.57
5391 9822 0.817634 TAGGCTGGTGTTGTGTGTGC 60.818 55.000 0.00 0.00 0.00 4.57
5392 9823 0.944386 GTAGGCTGGTGTTGTGTGTG 59.056 55.000 0.00 0.00 0.00 3.82
5393 9824 0.544223 TGTAGGCTGGTGTTGTGTGT 59.456 50.000 0.00 0.00 0.00 3.72
5394 9825 1.603802 CTTGTAGGCTGGTGTTGTGTG 59.396 52.381 0.00 0.00 0.00 3.82
5395 9826 1.488812 TCTTGTAGGCTGGTGTTGTGT 59.511 47.619 0.00 0.00 0.00 3.72
5396 9827 2.254546 TCTTGTAGGCTGGTGTTGTG 57.745 50.000 0.00 0.00 0.00 3.33
5397 9828 2.572290 GTTCTTGTAGGCTGGTGTTGT 58.428 47.619 0.00 0.00 0.00 3.32
5398 9829 1.531149 CGTTCTTGTAGGCTGGTGTTG 59.469 52.381 0.00 0.00 0.00 3.33
5399 9830 1.414919 TCGTTCTTGTAGGCTGGTGTT 59.585 47.619 0.00 0.00 0.00 3.32
5400 9831 1.000955 CTCGTTCTTGTAGGCTGGTGT 59.999 52.381 0.00 0.00 0.00 4.16
5401 9832 1.714794 CTCGTTCTTGTAGGCTGGTG 58.285 55.000 0.00 0.00 0.00 4.17
5402 9833 0.037232 GCTCGTTCTTGTAGGCTGGT 60.037 55.000 0.00 0.00 0.00 4.00
5403 9834 0.037326 TGCTCGTTCTTGTAGGCTGG 60.037 55.000 0.00 0.00 0.00 4.85
5404 9835 1.337260 ACTGCTCGTTCTTGTAGGCTG 60.337 52.381 0.00 0.00 0.00 4.85
5405 9836 0.969894 ACTGCTCGTTCTTGTAGGCT 59.030 50.000 0.00 0.00 0.00 4.58
5406 9837 1.797025 AACTGCTCGTTCTTGTAGGC 58.203 50.000 0.00 0.00 0.00 3.93
5407 9838 4.175787 AGTAACTGCTCGTTCTTGTAGG 57.824 45.455 0.00 0.00 37.05 3.18
5408 9839 5.094134 GGTAGTAACTGCTCGTTCTTGTAG 58.906 45.833 0.00 0.00 37.05 2.74
5409 9840 4.763793 AGGTAGTAACTGCTCGTTCTTGTA 59.236 41.667 0.00 0.00 37.05 2.41
5410 9841 3.573110 AGGTAGTAACTGCTCGTTCTTGT 59.427 43.478 0.00 0.00 37.05 3.16
5411 9842 4.167268 GAGGTAGTAACTGCTCGTTCTTG 58.833 47.826 0.00 0.00 37.05 3.02
5412 9843 3.825014 TGAGGTAGTAACTGCTCGTTCTT 59.175 43.478 0.00 0.00 37.05 2.52
5413 9844 3.418995 TGAGGTAGTAACTGCTCGTTCT 58.581 45.455 0.00 0.00 37.05 3.01
5414 9845 3.844577 TGAGGTAGTAACTGCTCGTTC 57.155 47.619 0.00 0.00 37.05 3.95
5415 9846 3.762288 TCATGAGGTAGTAACTGCTCGTT 59.238 43.478 0.00 0.00 39.64 3.85
5416 9847 3.353557 TCATGAGGTAGTAACTGCTCGT 58.646 45.455 0.00 0.00 0.00 4.18
5417 9848 3.378742 ACTCATGAGGTAGTAACTGCTCG 59.621 47.826 26.08 0.00 0.00 5.03
5418 9849 4.399618 TGACTCATGAGGTAGTAACTGCTC 59.600 45.833 26.08 10.54 0.00 4.26
5419 9850 4.344978 TGACTCATGAGGTAGTAACTGCT 58.655 43.478 26.08 0.56 0.00 4.24
5420 9851 4.720649 TGACTCATGAGGTAGTAACTGC 57.279 45.455 26.08 3.71 0.00 4.40
5421 9852 6.456795 TCATGACTCATGAGGTAGTAACTG 57.543 41.667 26.08 11.47 44.60 3.16
5432 9863 2.993937 TGCAATGCTCATGACTCATGA 58.006 42.857 18.74 18.74 46.84 3.07
5433 9864 3.119637 TGTTGCAATGCTCATGACTCATG 60.120 43.478 12.25 12.25 42.60 3.07
5434 9865 3.086282 TGTTGCAATGCTCATGACTCAT 58.914 40.909 6.82 0.00 0.00 2.90
5435 9866 2.506444 TGTTGCAATGCTCATGACTCA 58.494 42.857 6.82 0.00 0.00 3.41
5436 9867 3.128068 TGATGTTGCAATGCTCATGACTC 59.872 43.478 17.33 7.79 0.00 3.36
5437 9868 3.086282 TGATGTTGCAATGCTCATGACT 58.914 40.909 17.33 0.00 0.00 3.41
5438 9869 3.497297 TGATGTTGCAATGCTCATGAC 57.503 42.857 17.33 7.90 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.