Multiple sequence alignment - TraesCS3D01G187400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G187400 chr3D 100.000 3891 0 0 1 3891 173820356 173816466 0.000000e+00 7186.0
1 TraesCS3D01G187400 chr3D 86.675 758 70 16 1039 1769 174049406 174048653 0.000000e+00 811.0
2 TraesCS3D01G187400 chr3D 81.142 753 123 14 1 737 154599639 154598890 1.560000e-163 586.0
3 TraesCS3D01G187400 chr3D 90.625 192 17 1 2138 2329 174046489 174046299 1.790000e-63 254.0
4 TraesCS3D01G187400 chr3D 96.875 32 1 0 867 898 174049529 174049498 2.000000e-03 54.7
5 TraesCS3D01G187400 chr3A 92.954 1178 47 20 731 1874 212534458 212533283 0.000000e+00 1683.0
6 TraesCS3D01G187400 chr3A 85.696 762 74 18 1039 1769 212703923 212703166 0.000000e+00 771.0
7 TraesCS3D01G187400 chr3A 97.471 435 11 0 2136 2570 212533282 212532848 0.000000e+00 743.0
8 TraesCS3D01G187400 chr3A 90.838 382 32 3 2585 2963 212531184 212530803 3.470000e-140 508.0
9 TraesCS3D01G187400 chr3A 90.052 382 33 4 2585 2963 212529740 212529361 1.260000e-134 490.0
10 TraesCS3D01G187400 chr3A 88.889 333 32 4 2634 2963 212532587 212532257 4.680000e-109 405.0
11 TraesCS3D01G187400 chr3A 89.005 191 20 1 2138 2328 212703058 212702869 6.500000e-58 235.0
12 TraesCS3D01G187400 chr3A 96.875 32 1 0 867 898 212704008 212703977 2.000000e-03 54.7
13 TraesCS3D01G187400 chr3B 95.163 1013 36 7 867 1867 252670950 252669939 0.000000e+00 1587.0
14 TraesCS3D01G187400 chr3B 95.105 715 20 7 2130 2831 252669939 252669227 0.000000e+00 1112.0
15 TraesCS3D01G187400 chr3B 85.995 764 64 24 1046 1769 252796843 252796083 0.000000e+00 778.0
16 TraesCS3D01G187400 chr3B 91.743 109 9 0 741 849 252673631 252673523 6.730000e-33 152.0
17 TraesCS3D01G187400 chr3B 80.729 192 21 7 2138 2329 252795919 252795744 6.780000e-28 135.0
18 TraesCS3D01G187400 chr5A 93.455 932 57 3 2960 3891 655147695 655148622 0.000000e+00 1380.0
19 TraesCS3D01G187400 chr6D 92.258 930 71 1 2960 3889 435769338 435768410 0.000000e+00 1317.0
20 TraesCS3D01G187400 chr5D 91.435 934 76 4 2960 3891 486237133 486236202 0.000000e+00 1279.0
21 TraesCS3D01G187400 chr4D 90.831 927 84 1 2960 3886 27135513 27136438 0.000000e+00 1240.0
22 TraesCS3D01G187400 chr4D 86.300 927 125 2 2966 3891 65088642 65087717 0.000000e+00 1007.0
23 TraesCS3D01G187400 chr1A 89.507 934 96 2 2960 3891 30258728 30257795 0.000000e+00 1181.0
24 TraesCS3D01G187400 chr1A 81.989 744 111 17 3 734 550834047 550833315 9.240000e-171 610.0
25 TraesCS3D01G187400 chr1A 78.571 238 32 12 1161 1392 80566331 80566107 5.240000e-29 139.0
26 TraesCS3D01G187400 chr1D 96.418 698 24 1 2960 3657 372539896 372539200 0.000000e+00 1149.0
27 TraesCS3D01G187400 chr6A 87.124 932 120 0 2960 3891 94065060 94064129 0.000000e+00 1057.0
28 TraesCS3D01G187400 chr6A 84.642 573 72 14 1 565 32445778 32445214 1.220000e-154 556.0
29 TraesCS3D01G187400 chr6A 84.441 572 75 12 1 565 32521268 32520704 5.680000e-153 551.0
30 TraesCS3D01G187400 chr6A 80.318 691 119 16 1 681 508132483 508133166 1.250000e-139 507.0
31 TraesCS3D01G187400 chr7D 87.124 932 119 1 2960 3891 72277272 72278202 0.000000e+00 1055.0
32 TraesCS3D01G187400 chr7D 80.718 752 129 14 1 740 84415813 84415066 4.360000e-159 571.0
33 TraesCS3D01G187400 chr7D 79.741 232 26 10 1161 1389 30753383 30753596 8.710000e-32 148.0
34 TraesCS3D01G187400 chr2D 84.070 747 110 9 1 740 403471427 403472171 0.000000e+00 712.0
35 TraesCS3D01G187400 chr2D 83.016 683 96 15 45 714 650469899 650470574 5.560000e-168 601.0
36 TraesCS3D01G187400 chr5B 84.253 616 83 12 1 606 91898353 91898964 4.330000e-164 588.0
37 TraesCS3D01G187400 chr1B 79.915 234 33 9 1161 1392 138734659 138734438 4.020000e-35 159.0
38 TraesCS3D01G187400 chr4A 78.696 230 35 7 1161 1389 697986880 697986664 1.460000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G187400 chr3D 173816466 173820356 3890 True 7186.000000 7186 100.000000 1 3891 1 chr3D.!!$R2 3890
1 TraesCS3D01G187400 chr3D 154598890 154599639 749 True 586.000000 586 81.142000 1 737 1 chr3D.!!$R1 736
2 TraesCS3D01G187400 chr3D 174046299 174049529 3230 True 373.233333 811 91.391667 867 2329 3 chr3D.!!$R3 1462
3 TraesCS3D01G187400 chr3A 212529361 212534458 5097 True 765.800000 1683 92.040800 731 2963 5 chr3A.!!$R1 2232
4 TraesCS3D01G187400 chr3A 212702869 212704008 1139 True 353.566667 771 90.525333 867 2328 3 chr3A.!!$R2 1461
5 TraesCS3D01G187400 chr3B 252669227 252673631 4404 True 950.333333 1587 94.003667 741 2831 3 chr3B.!!$R1 2090
6 TraesCS3D01G187400 chr3B 252795744 252796843 1099 True 456.500000 778 83.362000 1046 2329 2 chr3B.!!$R2 1283
7 TraesCS3D01G187400 chr5A 655147695 655148622 927 False 1380.000000 1380 93.455000 2960 3891 1 chr5A.!!$F1 931
8 TraesCS3D01G187400 chr6D 435768410 435769338 928 True 1317.000000 1317 92.258000 2960 3889 1 chr6D.!!$R1 929
9 TraesCS3D01G187400 chr5D 486236202 486237133 931 True 1279.000000 1279 91.435000 2960 3891 1 chr5D.!!$R1 931
10 TraesCS3D01G187400 chr4D 27135513 27136438 925 False 1240.000000 1240 90.831000 2960 3886 1 chr4D.!!$F1 926
11 TraesCS3D01G187400 chr4D 65087717 65088642 925 True 1007.000000 1007 86.300000 2966 3891 1 chr4D.!!$R1 925
12 TraesCS3D01G187400 chr1A 30257795 30258728 933 True 1181.000000 1181 89.507000 2960 3891 1 chr1A.!!$R1 931
13 TraesCS3D01G187400 chr1A 550833315 550834047 732 True 610.000000 610 81.989000 3 734 1 chr1A.!!$R3 731
14 TraesCS3D01G187400 chr1D 372539200 372539896 696 True 1149.000000 1149 96.418000 2960 3657 1 chr1D.!!$R1 697
15 TraesCS3D01G187400 chr6A 94064129 94065060 931 True 1057.000000 1057 87.124000 2960 3891 1 chr6A.!!$R3 931
16 TraesCS3D01G187400 chr6A 32445214 32445778 564 True 556.000000 556 84.642000 1 565 1 chr6A.!!$R1 564
17 TraesCS3D01G187400 chr6A 32520704 32521268 564 True 551.000000 551 84.441000 1 565 1 chr6A.!!$R2 564
18 TraesCS3D01G187400 chr6A 508132483 508133166 683 False 507.000000 507 80.318000 1 681 1 chr6A.!!$F1 680
19 TraesCS3D01G187400 chr7D 72277272 72278202 930 False 1055.000000 1055 87.124000 2960 3891 1 chr7D.!!$F2 931
20 TraesCS3D01G187400 chr7D 84415066 84415813 747 True 571.000000 571 80.718000 1 740 1 chr7D.!!$R1 739
21 TraesCS3D01G187400 chr2D 403471427 403472171 744 False 712.000000 712 84.070000 1 740 1 chr2D.!!$F1 739
22 TraesCS3D01G187400 chr2D 650469899 650470574 675 False 601.000000 601 83.016000 45 714 1 chr2D.!!$F2 669
23 TraesCS3D01G187400 chr5B 91898353 91898964 611 False 588.000000 588 84.253000 1 606 1 chr5B.!!$F1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 473 0.034896 GAAAAGGAGTGGACGGAGCA 59.965 55.0 0.00 0.0 0.00 4.26 F
1157 3764 0.180171 TGGTGTTCACCTGTGGTCTG 59.820 55.0 20.48 0.0 31.02 3.51 F
1411 4021 0.324738 CTAGCCTCCCACCTGACAGA 60.325 60.0 3.32 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 6899 0.033504 TCAGACCGGCAACTGAACTC 59.966 55.0 19.42 0.04 39.68 3.01 R
2117 6902 0.033504 GAGTCAGACCGGCAACTGAA 59.966 55.0 22.06 9.02 43.29 3.02 R
2890 10778 0.380378 TCCAGCTTGTTTTGCGTGAC 59.620 50.0 0.00 0.00 35.28 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
330 334 2.435938 GTTGCCGCCGATCTCCAA 60.436 61.111 0.00 0.00 0.00 3.53
338 342 0.036388 GCCGATCTCCAACTTGGACA 60.036 55.000 6.39 0.00 42.67 4.02
427 435 0.541392 CTCATCGTGGTGGATGGGAA 59.459 55.000 0.00 0.00 45.84 3.97
430 438 1.261938 ATCGTGGTGGATGGGAACGA 61.262 55.000 0.00 0.00 46.06 3.85
444 453 2.578786 GGAACGAAAAGGGTGAGGAAA 58.421 47.619 0.00 0.00 0.00 3.13
460 473 0.034896 GAAAAGGAGTGGACGGAGCA 59.965 55.000 0.00 0.00 0.00 4.26
467 480 1.679305 GTGGACGGAGCAGGAGAGA 60.679 63.158 0.00 0.00 0.00 3.10
480 493 1.354031 AGGAGAGAGACAGAGTGAGCA 59.646 52.381 0.00 0.00 0.00 4.26
585 601 3.626924 GACCGCCCCATATCCGCT 61.627 66.667 0.00 0.00 0.00 5.52
586 602 3.168528 ACCGCCCCATATCCGCTT 61.169 61.111 0.00 0.00 0.00 4.68
594 610 5.120399 CGCCCCATATCCGCTTTATATTTA 58.880 41.667 0.00 0.00 0.00 1.40
609 625 7.549488 GCTTTATATTTAGACTGGATATGGCGT 59.451 37.037 0.00 0.00 0.00 5.68
612 628 4.481368 TTTAGACTGGATATGGCGTGTT 57.519 40.909 0.00 0.00 0.00 3.32
613 629 2.315925 AGACTGGATATGGCGTGTTG 57.684 50.000 0.00 0.00 0.00 3.33
614 630 1.831106 AGACTGGATATGGCGTGTTGA 59.169 47.619 0.00 0.00 0.00 3.18
615 631 2.435805 AGACTGGATATGGCGTGTTGAT 59.564 45.455 0.00 0.00 0.00 2.57
616 632 2.802816 GACTGGATATGGCGTGTTGATC 59.197 50.000 0.00 0.00 0.00 2.92
617 633 2.170397 ACTGGATATGGCGTGTTGATCA 59.830 45.455 0.00 0.00 0.00 2.92
618 634 2.804527 CTGGATATGGCGTGTTGATCAG 59.195 50.000 0.00 0.00 0.00 2.90
619 635 1.532868 GGATATGGCGTGTTGATCAGC 59.467 52.381 2.05 2.05 0.00 4.26
622 638 2.434185 GGCGTGTTGATCAGCCGA 60.434 61.111 19.19 0.00 40.17 5.54
623 639 2.456119 GGCGTGTTGATCAGCCGAG 61.456 63.158 19.19 7.77 40.17 4.63
624 640 3.084579 CGTGTTGATCAGCCGAGC 58.915 61.111 7.13 0.00 0.00 5.03
649 669 2.485038 GTCCGCGATTTAAAAGGTCCAA 59.515 45.455 8.23 0.00 0.00 3.53
692 714 2.029623 GTCAATGATCAATGGCCTGCT 58.970 47.619 10.84 0.00 0.00 4.24
695 717 0.471191 ATGATCAATGGCCTGCTCGA 59.529 50.000 3.32 0.00 0.00 4.04
801 823 1.787057 CGCCTAGTCCTAGCAGGTCG 61.787 65.000 2.68 0.00 36.53 4.79
802 824 2.034607 CCTAGTCCTAGCAGGTCGC 58.965 63.158 2.68 0.00 42.91 5.19
981 3559 5.529060 GCTGTCCTATAAAAACCTGATCCTG 59.471 44.000 0.00 0.00 0.00 3.86
990 3568 2.060383 CCTGATCCTGCTCCGGTGA 61.060 63.158 7.92 0.00 0.00 4.02
1104 3690 1.067213 GTGGTCAGTGCTCTCTTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
1105 3691 0.534873 GGTCAGTGCTCTCTTCTCCC 59.465 60.000 0.00 0.00 0.00 4.30
1106 3692 1.555967 GTCAGTGCTCTCTTCTCCCT 58.444 55.000 0.00 0.00 0.00 4.20
1107 3693 1.476488 GTCAGTGCTCTCTTCTCCCTC 59.524 57.143 0.00 0.00 0.00 4.30
1108 3694 1.076187 TCAGTGCTCTCTTCTCCCTCA 59.924 52.381 0.00 0.00 0.00 3.86
1140 3735 1.734465 GTTGGCTCGAATGAGAACTGG 59.266 52.381 0.00 0.00 45.57 4.00
1157 3764 0.180171 TGGTGTTCACCTGTGGTCTG 59.820 55.000 20.48 0.00 31.02 3.51
1411 4021 0.324738 CTAGCCTCCCACCTGACAGA 60.325 60.000 3.32 0.00 0.00 3.41
1742 4373 3.303329 CGTCAGTGTTCACAAATCAGTGG 60.303 47.826 5.74 0.00 39.93 4.00
1898 6683 7.457868 TGCGTAAATAATTGTGTTAGTGCTAC 58.542 34.615 0.00 0.00 0.00 3.58
1926 6711 6.808321 ACAATTATACTAGGCTGAACAGGA 57.192 37.500 0.00 0.00 0.00 3.86
1927 6712 7.195374 ACAATTATACTAGGCTGAACAGGAA 57.805 36.000 0.00 0.00 0.00 3.36
1928 6713 7.275920 ACAATTATACTAGGCTGAACAGGAAG 58.724 38.462 0.00 0.00 0.00 3.46
1929 6714 7.125811 ACAATTATACTAGGCTGAACAGGAAGA 59.874 37.037 0.00 0.00 0.00 2.87
1930 6715 6.466885 TTATACTAGGCTGAACAGGAAGAC 57.533 41.667 0.00 0.00 0.00 3.01
1931 6716 1.903183 ACTAGGCTGAACAGGAAGACC 59.097 52.381 0.00 0.00 0.00 3.85
1933 6718 0.980423 AGGCTGAACAGGAAGACCTC 59.020 55.000 3.99 0.00 45.94 3.85
1934 6719 0.980423 GGCTGAACAGGAAGACCTCT 59.020 55.000 3.99 0.00 45.94 3.69
1935 6720 1.349357 GGCTGAACAGGAAGACCTCTT 59.651 52.381 3.99 0.00 45.94 2.85
1936 6721 2.224646 GGCTGAACAGGAAGACCTCTTT 60.225 50.000 3.99 0.00 45.94 2.52
1937 6722 3.070748 GCTGAACAGGAAGACCTCTTTC 58.929 50.000 3.99 0.00 45.94 2.62
1938 6723 3.244387 GCTGAACAGGAAGACCTCTTTCT 60.244 47.826 3.99 0.00 45.94 2.52
1939 6724 4.745172 GCTGAACAGGAAGACCTCTTTCTT 60.745 45.833 3.99 0.00 45.94 2.52
1940 6725 5.511545 GCTGAACAGGAAGACCTCTTTCTTA 60.512 44.000 3.99 0.00 45.94 2.10
1941 6726 6.494666 TGAACAGGAAGACCTCTTTCTTAA 57.505 37.500 0.00 0.00 45.94 1.85
1942 6727 6.525629 TGAACAGGAAGACCTCTTTCTTAAG 58.474 40.000 0.00 0.00 45.94 1.85
1943 6728 4.900684 ACAGGAAGACCTCTTTCTTAAGC 58.099 43.478 0.00 0.00 45.94 3.09
1944 6729 4.257731 CAGGAAGACCTCTTTCTTAAGCC 58.742 47.826 0.00 0.00 45.94 4.35
1945 6730 3.055747 AGGAAGACCTCTTTCTTAAGCCG 60.056 47.826 0.00 0.00 44.13 5.52
1946 6731 2.388310 AGACCTCTTTCTTAAGCCGC 57.612 50.000 0.00 0.00 0.00 6.53
1947 6732 1.623811 AGACCTCTTTCTTAAGCCGCA 59.376 47.619 0.00 0.00 0.00 5.69
1948 6733 2.038557 AGACCTCTTTCTTAAGCCGCAA 59.961 45.455 0.00 0.00 0.00 4.85
1949 6734 3.010420 GACCTCTTTCTTAAGCCGCAAT 58.990 45.455 0.00 0.00 0.00 3.56
1950 6735 3.421844 ACCTCTTTCTTAAGCCGCAATT 58.578 40.909 0.00 0.00 0.00 2.32
1951 6736 3.191371 ACCTCTTTCTTAAGCCGCAATTG 59.809 43.478 0.00 0.00 0.00 2.32
1952 6737 3.191371 CCTCTTTCTTAAGCCGCAATTGT 59.809 43.478 7.40 0.00 0.00 2.71
1953 6738 4.406943 CTCTTTCTTAAGCCGCAATTGTC 58.593 43.478 7.40 0.00 0.00 3.18
1954 6739 3.818210 TCTTTCTTAAGCCGCAATTGTCA 59.182 39.130 7.40 0.00 0.00 3.58
1955 6740 3.552604 TTCTTAAGCCGCAATTGTCAC 57.447 42.857 7.40 0.00 0.00 3.67
1956 6741 2.499197 TCTTAAGCCGCAATTGTCACA 58.501 42.857 7.40 0.00 0.00 3.58
1957 6742 2.483877 TCTTAAGCCGCAATTGTCACAG 59.516 45.455 7.40 0.00 0.00 3.66
1958 6743 2.177394 TAAGCCGCAATTGTCACAGA 57.823 45.000 7.40 0.00 0.00 3.41
1959 6744 1.317613 AAGCCGCAATTGTCACAGAA 58.682 45.000 7.40 0.00 0.00 3.02
1960 6745 1.317613 AGCCGCAATTGTCACAGAAA 58.682 45.000 7.40 0.00 0.00 2.52
1961 6746 1.001378 AGCCGCAATTGTCACAGAAAC 60.001 47.619 7.40 0.00 0.00 2.78
1962 6747 1.673760 CCGCAATTGTCACAGAAACG 58.326 50.000 7.40 0.00 0.00 3.60
1963 6748 1.002900 CCGCAATTGTCACAGAAACGT 60.003 47.619 7.40 0.00 0.00 3.99
1964 6749 2.540769 CCGCAATTGTCACAGAAACGTT 60.541 45.455 7.40 0.00 0.00 3.99
1965 6750 2.463653 CGCAATTGTCACAGAAACGTTG 59.536 45.455 0.00 0.00 0.00 4.10
1966 6751 3.434637 GCAATTGTCACAGAAACGTTGT 58.565 40.909 0.00 0.00 0.00 3.32
1967 6752 3.857093 GCAATTGTCACAGAAACGTTGTT 59.143 39.130 0.00 0.00 0.00 2.83
1968 6753 4.027702 GCAATTGTCACAGAAACGTTGTTC 60.028 41.667 0.00 0.00 0.00 3.18
1969 6754 3.377434 TTGTCACAGAAACGTTGTTCG 57.623 42.857 0.00 0.00 46.00 3.95
1970 6755 2.608268 TGTCACAGAAACGTTGTTCGA 58.392 42.857 0.00 0.00 42.86 3.71
1971 6756 3.191669 TGTCACAGAAACGTTGTTCGAT 58.808 40.909 0.00 0.00 42.86 3.59
1972 6757 4.361420 TGTCACAGAAACGTTGTTCGATA 58.639 39.130 0.00 0.00 42.86 2.92
1973 6758 4.804665 TGTCACAGAAACGTTGTTCGATAA 59.195 37.500 0.00 0.00 42.86 1.75
1974 6759 5.291371 TGTCACAGAAACGTTGTTCGATAAA 59.709 36.000 0.00 0.00 42.86 1.40
1975 6760 6.183360 TGTCACAGAAACGTTGTTCGATAAAA 60.183 34.615 0.00 0.00 42.86 1.52
1976 6761 6.683708 GTCACAGAAACGTTGTTCGATAAAAA 59.316 34.615 0.00 0.00 42.86 1.94
1977 6762 7.375017 GTCACAGAAACGTTGTTCGATAAAAAT 59.625 33.333 0.00 0.00 42.86 1.82
1978 6763 7.584847 TCACAGAAACGTTGTTCGATAAAAATC 59.415 33.333 0.00 0.00 42.86 2.17
1979 6764 7.374754 CACAGAAACGTTGTTCGATAAAAATCA 59.625 33.333 0.00 0.00 42.86 2.57
1980 6765 8.073768 ACAGAAACGTTGTTCGATAAAAATCAT 58.926 29.630 0.00 0.00 42.86 2.45
1981 6766 9.536558 CAGAAACGTTGTTCGATAAAAATCATA 57.463 29.630 0.00 0.00 42.86 2.15
1984 6769 8.835467 AACGTTGTTCGATAAAAATCATATGG 57.165 30.769 0.00 0.00 42.86 2.74
1985 6770 6.910433 ACGTTGTTCGATAAAAATCATATGGC 59.090 34.615 2.13 0.00 42.86 4.40
1986 6771 7.132213 CGTTGTTCGATAAAAATCATATGGCT 58.868 34.615 2.13 0.00 42.86 4.75
1987 6772 8.279800 CGTTGTTCGATAAAAATCATATGGCTA 58.720 33.333 2.13 0.00 42.86 3.93
1990 6775 9.725019 TGTTCGATAAAAATCATATGGCTATCT 57.275 29.630 2.13 0.00 0.00 1.98
1996 6781 9.925545 ATAAAAATCATATGGCTATCTATGGCA 57.074 29.630 2.13 0.00 43.90 4.92
1998 6783 8.834004 AAAATCATATGGCTATCTATGGCATT 57.166 30.769 4.78 0.00 46.32 3.56
1999 6784 7.818997 AATCATATGGCTATCTATGGCATTG 57.181 36.000 4.78 3.38 46.32 2.82
2000 6785 6.564557 TCATATGGCTATCTATGGCATTGA 57.435 37.500 13.78 13.78 46.32 2.57
2001 6786 7.145474 TCATATGGCTATCTATGGCATTGAT 57.855 36.000 23.99 23.99 46.32 2.57
2002 6787 8.266363 TCATATGGCTATCTATGGCATTGATA 57.734 34.615 23.72 23.72 46.32 2.15
2003 6788 8.887393 TCATATGGCTATCTATGGCATTGATAT 58.113 33.333 24.86 16.70 46.32 1.63
2007 6792 7.512130 TGGCTATCTATGGCATTGATATAAGG 58.488 38.462 24.86 16.92 35.81 2.69
2008 6793 7.348011 TGGCTATCTATGGCATTGATATAAGGA 59.652 37.037 24.86 9.82 35.81 3.36
2009 6794 8.381636 GGCTATCTATGGCATTGATATAAGGAT 58.618 37.037 24.86 7.21 35.81 3.24
2010 6795 9.217278 GCTATCTATGGCATTGATATAAGGATG 57.783 37.037 24.86 15.59 34.10 3.51
2011 6796 9.217278 CTATCTATGGCATTGATATAAGGATGC 57.783 37.037 24.86 8.32 43.06 3.91
2012 6797 7.204243 TCTATGGCATTGATATAAGGATGCT 57.796 36.000 4.78 0.00 43.26 3.79
2013 6798 7.278135 TCTATGGCATTGATATAAGGATGCTC 58.722 38.462 4.78 7.65 43.26 4.26
2014 6799 5.245584 TGGCATTGATATAAGGATGCTCA 57.754 39.130 13.71 9.34 43.26 4.26
2015 6800 5.633117 TGGCATTGATATAAGGATGCTCAA 58.367 37.500 13.71 2.50 43.26 3.02
2016 6801 6.069994 TGGCATTGATATAAGGATGCTCAAA 58.930 36.000 13.71 0.00 43.26 2.69
2017 6802 6.722590 TGGCATTGATATAAGGATGCTCAAAT 59.277 34.615 13.71 0.00 43.26 2.32
2018 6803 7.233962 TGGCATTGATATAAGGATGCTCAAATT 59.766 33.333 13.71 0.00 43.26 1.82
2019 6804 8.742777 GGCATTGATATAAGGATGCTCAAATTA 58.257 33.333 13.71 0.00 43.26 1.40
2024 6809 9.851686 TGATATAAGGATGCTCAAATTAACTGT 57.148 29.630 0.00 0.00 0.00 3.55
2029 6814 8.409358 AAGGATGCTCAAATTAACTGTAAACT 57.591 30.769 0.00 0.00 0.00 2.66
2030 6815 7.820648 AGGATGCTCAAATTAACTGTAAACTG 58.179 34.615 0.00 0.00 0.00 3.16
2031 6816 6.528072 GGATGCTCAAATTAACTGTAAACTGC 59.472 38.462 0.00 0.00 0.00 4.40
2032 6817 6.384258 TGCTCAAATTAACTGTAAACTGCA 57.616 33.333 0.00 0.00 0.00 4.41
2033 6818 6.980593 TGCTCAAATTAACTGTAAACTGCAT 58.019 32.000 0.00 0.00 0.00 3.96
2034 6819 8.105097 TGCTCAAATTAACTGTAAACTGCATA 57.895 30.769 0.00 0.00 0.00 3.14
2035 6820 8.572185 TGCTCAAATTAACTGTAAACTGCATAA 58.428 29.630 0.00 0.00 0.00 1.90
2036 6821 9.405587 GCTCAAATTAACTGTAAACTGCATAAA 57.594 29.630 0.00 0.00 0.00 1.40
2051 6836 8.816640 AACTGCATAAAACTTAATTGAAGGTG 57.183 30.769 0.00 0.00 39.74 4.00
2052 6837 6.868339 ACTGCATAAAACTTAATTGAAGGTGC 59.132 34.615 0.00 0.00 39.74 5.01
2053 6838 6.753180 TGCATAAAACTTAATTGAAGGTGCA 58.247 32.000 0.00 0.00 39.74 4.57
2054 6839 6.867816 TGCATAAAACTTAATTGAAGGTGCAG 59.132 34.615 0.00 0.00 39.74 4.41
2055 6840 7.090173 GCATAAAACTTAATTGAAGGTGCAGA 58.910 34.615 0.00 0.00 39.74 4.26
2056 6841 7.598493 GCATAAAACTTAATTGAAGGTGCAGAA 59.402 33.333 0.00 0.00 39.74 3.02
2057 6842 8.915654 CATAAAACTTAATTGAAGGTGCAGAAC 58.084 33.333 0.00 0.00 39.74 3.01
2058 6843 6.715347 AAACTTAATTGAAGGTGCAGAACT 57.285 33.333 0.00 0.00 39.74 3.01
2059 6844 7.817418 AAACTTAATTGAAGGTGCAGAACTA 57.183 32.000 0.00 0.00 39.74 2.24
2060 6845 7.817418 AACTTAATTGAAGGTGCAGAACTAA 57.183 32.000 0.00 0.00 39.74 2.24
2061 6846 7.817418 ACTTAATTGAAGGTGCAGAACTAAA 57.183 32.000 0.00 0.00 39.74 1.85
2062 6847 7.875971 ACTTAATTGAAGGTGCAGAACTAAAG 58.124 34.615 0.00 0.00 39.74 1.85
2063 6848 7.502561 ACTTAATTGAAGGTGCAGAACTAAAGT 59.497 33.333 0.00 0.00 39.74 2.66
2064 6849 5.695851 ATTGAAGGTGCAGAACTAAAGTG 57.304 39.130 0.00 0.00 0.00 3.16
2065 6850 4.415881 TGAAGGTGCAGAACTAAAGTGA 57.584 40.909 0.00 0.00 0.00 3.41
2066 6851 4.127171 TGAAGGTGCAGAACTAAAGTGAC 58.873 43.478 0.00 0.00 0.00 3.67
2067 6852 3.838244 AGGTGCAGAACTAAAGTGACA 57.162 42.857 0.00 0.00 0.00 3.58
2068 6853 4.150897 AGGTGCAGAACTAAAGTGACAA 57.849 40.909 0.00 0.00 0.00 3.18
2069 6854 4.523083 AGGTGCAGAACTAAAGTGACAAA 58.477 39.130 0.00 0.00 0.00 2.83
2070 6855 5.133221 AGGTGCAGAACTAAAGTGACAAAT 58.867 37.500 0.00 0.00 0.00 2.32
2071 6856 6.296026 AGGTGCAGAACTAAAGTGACAAATA 58.704 36.000 0.00 0.00 0.00 1.40
2072 6857 6.770785 AGGTGCAGAACTAAAGTGACAAATAA 59.229 34.615 0.00 0.00 0.00 1.40
2073 6858 7.041098 AGGTGCAGAACTAAAGTGACAAATAAG 60.041 37.037 0.00 0.00 0.00 1.73
2074 6859 7.041372 GGTGCAGAACTAAAGTGACAAATAAGA 60.041 37.037 0.00 0.00 0.00 2.10
2075 6860 8.342634 GTGCAGAACTAAAGTGACAAATAAGAA 58.657 33.333 0.00 0.00 0.00 2.52
2076 6861 8.898761 TGCAGAACTAAAGTGACAAATAAGAAA 58.101 29.630 0.00 0.00 0.00 2.52
2077 6862 9.170584 GCAGAACTAAAGTGACAAATAAGAAAC 57.829 33.333 0.00 0.00 0.00 2.78
2081 6866 9.965824 AACTAAAGTGACAAATAAGAAACATGG 57.034 29.630 0.00 0.00 0.00 3.66
2082 6867 9.349713 ACTAAAGTGACAAATAAGAAACATGGA 57.650 29.630 0.00 0.00 0.00 3.41
2085 6870 9.696917 AAAGTGACAAATAAGAAACATGGATTC 57.303 29.630 0.00 1.28 0.00 2.52
2086 6871 7.830739 AGTGACAAATAAGAAACATGGATTCC 58.169 34.615 9.20 0.00 0.00 3.01
2087 6872 7.671398 AGTGACAAATAAGAAACATGGATTCCT 59.329 33.333 3.95 1.14 0.00 3.36
2088 6873 7.756722 GTGACAAATAAGAAACATGGATTCCTG 59.243 37.037 3.95 2.74 0.00 3.86
2089 6874 7.669304 TGACAAATAAGAAACATGGATTCCTGA 59.331 33.333 3.95 0.00 0.00 3.86
2090 6875 8.421249 ACAAATAAGAAACATGGATTCCTGAA 57.579 30.769 3.95 0.00 0.00 3.02
2091 6876 8.869109 ACAAATAAGAAACATGGATTCCTGAAA 58.131 29.630 3.95 0.00 0.00 2.69
2092 6877 9.880157 CAAATAAGAAACATGGATTCCTGAAAT 57.120 29.630 3.95 0.00 0.00 2.17
2096 6881 8.884124 AAGAAACATGGATTCCTGAAATAGAA 57.116 30.769 3.95 0.00 0.00 2.10
2097 6882 8.517062 AGAAACATGGATTCCTGAAATAGAAG 57.483 34.615 3.95 0.00 0.00 2.85
2098 6883 8.112183 AGAAACATGGATTCCTGAAATAGAAGT 58.888 33.333 3.95 0.00 0.00 3.01
2099 6884 7.636150 AACATGGATTCCTGAAATAGAAGTG 57.364 36.000 3.95 0.00 0.00 3.16
2100 6885 6.125029 ACATGGATTCCTGAAATAGAAGTGG 58.875 40.000 3.95 0.00 0.00 4.00
2101 6886 5.779241 TGGATTCCTGAAATAGAAGTGGT 57.221 39.130 3.95 0.00 0.00 4.16
2102 6887 6.139679 TGGATTCCTGAAATAGAAGTGGTT 57.860 37.500 3.95 0.00 0.00 3.67
2103 6888 6.552008 TGGATTCCTGAAATAGAAGTGGTTT 58.448 36.000 3.95 0.00 0.00 3.27
2104 6889 6.434028 TGGATTCCTGAAATAGAAGTGGTTTG 59.566 38.462 3.95 0.00 0.00 2.93
2105 6890 6.659242 GGATTCCTGAAATAGAAGTGGTTTGA 59.341 38.462 0.00 0.00 0.00 2.69
2106 6891 7.176690 GGATTCCTGAAATAGAAGTGGTTTGAA 59.823 37.037 0.00 0.00 0.00 2.69
2107 6892 7.510549 TTCCTGAAATAGAAGTGGTTTGAAG 57.489 36.000 0.00 0.00 0.00 3.02
2108 6893 6.003950 TCCTGAAATAGAAGTGGTTTGAAGG 58.996 40.000 0.00 0.00 0.00 3.46
2109 6894 5.183904 CCTGAAATAGAAGTGGTTTGAAGGG 59.816 44.000 0.00 0.00 0.00 3.95
2110 6895 5.947663 TGAAATAGAAGTGGTTTGAAGGGA 58.052 37.500 0.00 0.00 0.00 4.20
2111 6896 6.369629 TGAAATAGAAGTGGTTTGAAGGGAA 58.630 36.000 0.00 0.00 0.00 3.97
2112 6897 6.264518 TGAAATAGAAGTGGTTTGAAGGGAAC 59.735 38.462 0.00 0.00 0.00 3.62
2113 6898 2.572290 AGAAGTGGTTTGAAGGGAACG 58.428 47.619 0.00 0.00 0.00 3.95
2114 6899 1.607148 GAAGTGGTTTGAAGGGAACGG 59.393 52.381 0.00 0.00 0.00 4.44
2115 6900 0.841289 AGTGGTTTGAAGGGAACGGA 59.159 50.000 0.00 0.00 0.00 4.69
2116 6901 1.202770 AGTGGTTTGAAGGGAACGGAG 60.203 52.381 0.00 0.00 0.00 4.63
2129 6914 2.030562 CGGAGTTCAGTTGCCGGT 59.969 61.111 1.90 0.00 40.08 5.28
2130 6915 2.027625 CGGAGTTCAGTTGCCGGTC 61.028 63.158 1.90 0.00 40.08 4.79
2131 6916 1.371558 GGAGTTCAGTTGCCGGTCT 59.628 57.895 1.90 0.00 0.00 3.85
2151 6936 4.067896 TCTGACTCACCAAAAGAATCTGC 58.932 43.478 0.00 0.00 0.00 4.26
2220 7005 7.177832 TGTCCTTCCTAACATCGAAGAAATA 57.822 36.000 0.00 0.00 43.58 1.40
2386 7174 7.495934 CCATTTCACCCTAGTTCATAGTACAAG 59.504 40.741 0.00 0.00 0.00 3.16
2706 9151 1.372582 GAGCTGGATGTTGCGAATCA 58.627 50.000 0.00 0.00 0.00 2.57
2785 9230 5.252586 AGCTAGCATATTGACCATCCATT 57.747 39.130 18.83 0.00 0.00 3.16
2843 10730 3.041211 TGCTGCTATCCACTGGTCTAAT 58.959 45.455 0.00 0.00 0.00 1.73
2851 10738 7.039011 TGCTATCCACTGGTCTAATAATCGATT 60.039 37.037 16.15 16.15 0.00 3.34
2856 10743 5.402568 CACTGGTCTAATAATCGATTGACCG 59.597 44.000 27.21 24.14 42.60 4.79
2908 10796 0.100325 TGTCACGCAAAACAAGCTGG 59.900 50.000 0.00 0.00 0.00 4.85
2910 10798 0.380378 TCACGCAAAACAAGCTGGAC 59.620 50.000 0.00 0.00 0.00 4.02
2914 10802 1.734388 GCAAAACAAGCTGGACCCGT 61.734 55.000 0.00 0.00 0.00 5.28
2915 10803 0.030638 CAAAACAAGCTGGACCCGTG 59.969 55.000 0.00 0.00 0.00 4.94
2918 10806 0.470766 AACAAGCTGGACCCGTGTTA 59.529 50.000 0.00 0.00 34.09 2.41
2923 10811 0.874607 GCTGGACCCGTGTTATAGCG 60.875 60.000 0.00 0.00 0.00 4.26
2924 10812 0.742505 CTGGACCCGTGTTATAGCGA 59.257 55.000 0.00 0.00 0.00 4.93
2941 10829 0.443478 CGAGTGCGAATCAACATGCA 59.557 50.000 0.00 0.00 40.82 3.96
2952 10840 3.213206 TCAACATGCAACTCCTCAACT 57.787 42.857 0.00 0.00 0.00 3.16
2954 10842 3.565482 TCAACATGCAACTCCTCAACTTC 59.435 43.478 0.00 0.00 0.00 3.01
2955 10843 3.498774 ACATGCAACTCCTCAACTTCT 57.501 42.857 0.00 0.00 0.00 2.85
2956 10844 3.825328 ACATGCAACTCCTCAACTTCTT 58.175 40.909 0.00 0.00 0.00 2.52
2957 10845 3.817647 ACATGCAACTCCTCAACTTCTTC 59.182 43.478 0.00 0.00 0.00 2.87
2958 10846 3.558931 TGCAACTCCTCAACTTCTTCA 57.441 42.857 0.00 0.00 0.00 3.02
2983 10871 2.349886 CGAGCTATCAACTTGCCACTTC 59.650 50.000 0.00 0.00 0.00 3.01
3032 10921 2.074729 TTGGGGACGGACAAAAACAT 57.925 45.000 0.00 0.00 0.00 2.71
3310 11201 3.750130 ACGTAGCTCTCGTTTCTACTTCA 59.250 43.478 10.39 0.00 38.38 3.02
3809 11700 2.698274 AGTTTTTCATCGGCCTTTTGGT 59.302 40.909 0.00 0.00 42.99 3.67
3845 11736 3.496875 CTCTCTGCCTCCGCGATGG 62.497 68.421 8.23 10.67 38.08 3.51
3874 11765 0.839946 CCCATCCGAAAGGGTCTCAT 59.160 55.000 1.84 0.00 46.20 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
427 435 2.173996 TCCTTTTCCTCACCCTTTTCGT 59.826 45.455 0.00 0.00 0.00 3.85
430 438 3.566351 CACTCCTTTTCCTCACCCTTTT 58.434 45.455 0.00 0.00 0.00 2.27
444 453 2.286523 CCTGCTCCGTCCACTCCTT 61.287 63.158 0.00 0.00 0.00 3.36
460 473 1.354031 TGCTCACTCTGTCTCTCTCCT 59.646 52.381 0.00 0.00 0.00 3.69
467 480 1.428869 AACCCTTGCTCACTCTGTCT 58.571 50.000 0.00 0.00 0.00 3.41
480 493 1.668151 GCGACGAGCTCAAACCCTT 60.668 57.895 15.40 0.00 44.04 3.95
566 582 3.238497 CGGATATGGGGCGGTCCA 61.238 66.667 0.00 0.00 41.60 4.02
585 601 8.372459 ACACGCCATATCCAGTCTAAATATAAA 58.628 33.333 0.00 0.00 0.00 1.40
586 602 7.903145 ACACGCCATATCCAGTCTAAATATAA 58.097 34.615 0.00 0.00 0.00 0.98
594 610 1.831106 TCAACACGCCATATCCAGTCT 59.169 47.619 0.00 0.00 0.00 3.24
609 625 1.005037 AACGCTCGGCTGATCAACA 60.005 52.632 0.00 0.00 0.00 3.33
612 628 1.446099 GACAACGCTCGGCTGATCA 60.446 57.895 0.00 0.00 0.00 2.92
613 629 2.167861 GGACAACGCTCGGCTGATC 61.168 63.158 0.00 0.00 0.00 2.92
614 630 2.125512 GGACAACGCTCGGCTGAT 60.126 61.111 0.00 0.00 0.00 2.90
615 631 4.717629 CGGACAACGCTCGGCTGA 62.718 66.667 0.00 0.00 34.82 4.26
635 655 9.942850 AAATCGATTCAATTGGACCTTTTAAAT 57.057 25.926 11.83 0.00 0.00 1.40
676 697 0.471191 TCGAGCAGGCCATTGATCAT 59.529 50.000 5.01 0.00 33.21 2.45
695 717 0.311165 CCGTATCCGTCTCGAATGCT 59.689 55.000 0.00 0.00 0.00 3.79
701 723 0.042361 CGTCTTCCGTATCCGTCTCG 60.042 60.000 0.00 0.00 0.00 4.04
714 736 1.933853 AGCATTTACATCCGCGTCTTC 59.066 47.619 4.92 0.00 0.00 2.87
715 737 1.933853 GAGCATTTACATCCGCGTCTT 59.066 47.619 4.92 0.00 0.00 3.01
724 746 3.206150 CGGTGGCTAAGAGCATTTACAT 58.794 45.455 0.21 0.00 44.75 2.29
757 779 4.095483 AGACTGAAGCAAGACTTTGTGTTG 59.905 41.667 3.65 3.65 39.29 3.33
802 824 2.350498 ACAATAGAACCGGCGAAATTCG 59.650 45.455 9.30 11.47 43.89 3.34
1140 3735 0.180406 ACCAGACCACAGGTGAACAC 59.820 55.000 0.00 0.00 35.25 3.32
1148 3743 2.047844 CCTGCGACCAGACCACAG 60.048 66.667 0.00 0.00 41.77 3.66
1157 3764 3.628646 AAGGCATCCACCTGCGACC 62.629 63.158 0.00 0.00 43.23 4.79
1206 3813 4.329545 TCCAGGAAGCACACCGCC 62.330 66.667 0.00 0.00 44.04 6.13
1431 4052 1.016130 ACGGATCAGTTGCGAGCAAG 61.016 55.000 11.09 0.76 42.53 4.01
1742 4373 0.951558 ACAATGAAGTCGTTGGTGGC 59.048 50.000 15.76 0.00 44.80 5.01
1869 6654 8.332464 GCACTAACACAATTATTTACGCATCTA 58.668 33.333 0.00 0.00 0.00 1.98
1870 6655 7.065803 AGCACTAACACAATTATTTACGCATCT 59.934 33.333 0.00 0.00 0.00 2.90
1871 6656 7.186804 AGCACTAACACAATTATTTACGCATC 58.813 34.615 0.00 0.00 0.00 3.91
1872 6657 7.083875 AGCACTAACACAATTATTTACGCAT 57.916 32.000 0.00 0.00 0.00 4.73
1873 6658 6.489127 AGCACTAACACAATTATTTACGCA 57.511 33.333 0.00 0.00 0.00 5.24
1874 6659 7.681903 AGTAGCACTAACACAATTATTTACGC 58.318 34.615 0.00 0.00 0.00 4.42
1905 6690 7.419172 GGTCTTCCTGTTCAGCCTAGTATAATT 60.419 40.741 0.00 0.00 0.00 1.40
1906 6691 6.042208 GGTCTTCCTGTTCAGCCTAGTATAAT 59.958 42.308 0.00 0.00 0.00 1.28
1907 6692 5.363005 GGTCTTCCTGTTCAGCCTAGTATAA 59.637 44.000 0.00 0.00 0.00 0.98
1908 6693 4.894114 GGTCTTCCTGTTCAGCCTAGTATA 59.106 45.833 0.00 0.00 0.00 1.47
1909 6694 3.707102 GGTCTTCCTGTTCAGCCTAGTAT 59.293 47.826 0.00 0.00 0.00 2.12
1910 6695 3.097614 GGTCTTCCTGTTCAGCCTAGTA 58.902 50.000 0.00 0.00 0.00 1.82
1911 6696 1.903183 GGTCTTCCTGTTCAGCCTAGT 59.097 52.381 0.00 0.00 0.00 2.57
1912 6697 2.167487 GAGGTCTTCCTGTTCAGCCTAG 59.833 54.545 0.00 0.00 45.24 3.02
1913 6698 2.180276 GAGGTCTTCCTGTTCAGCCTA 58.820 52.381 0.00 0.00 45.24 3.93
1914 6699 0.980423 GAGGTCTTCCTGTTCAGCCT 59.020 55.000 0.00 0.00 45.24 4.58
1915 6700 0.980423 AGAGGTCTTCCTGTTCAGCC 59.020 55.000 0.00 0.00 45.24 4.85
1916 6701 2.849294 AAGAGGTCTTCCTGTTCAGC 57.151 50.000 0.00 0.00 42.60 4.26
1917 6702 4.615588 AGAAAGAGGTCTTCCTGTTCAG 57.384 45.455 0.00 0.00 44.94 3.02
1918 6703 6.494666 TTAAGAAAGAGGTCTTCCTGTTCA 57.505 37.500 0.00 0.00 44.94 3.18
1919 6704 5.410132 GCTTAAGAAAGAGGTCTTCCTGTTC 59.590 44.000 6.67 0.00 44.94 3.18
1921 6706 4.263112 GGCTTAAGAAAGAGGTCTTCCTGT 60.263 45.833 6.67 0.00 45.24 4.00
1922 6707 4.257731 GGCTTAAGAAAGAGGTCTTCCTG 58.742 47.826 6.67 0.00 45.24 3.86
1924 6709 3.263261 CGGCTTAAGAAAGAGGTCTTCC 58.737 50.000 6.67 0.00 38.75 3.46
1925 6710 2.673862 GCGGCTTAAGAAAGAGGTCTTC 59.326 50.000 6.67 0.00 38.75 2.87
1926 6711 2.038557 TGCGGCTTAAGAAAGAGGTCTT 59.961 45.455 6.67 0.00 40.89 3.01
1927 6712 1.623811 TGCGGCTTAAGAAAGAGGTCT 59.376 47.619 6.67 0.00 34.37 3.85
1928 6713 2.094762 TGCGGCTTAAGAAAGAGGTC 57.905 50.000 6.67 0.00 34.37 3.85
1929 6714 2.561478 TTGCGGCTTAAGAAAGAGGT 57.439 45.000 6.67 0.00 34.37 3.85
1930 6715 3.191371 ACAATTGCGGCTTAAGAAAGAGG 59.809 43.478 6.67 0.00 34.37 3.69
1931 6716 4.083324 TGACAATTGCGGCTTAAGAAAGAG 60.083 41.667 6.67 0.00 34.37 2.85
1932 6717 3.818210 TGACAATTGCGGCTTAAGAAAGA 59.182 39.130 6.67 0.00 34.37 2.52
1933 6718 3.914364 GTGACAATTGCGGCTTAAGAAAG 59.086 43.478 6.67 0.00 35.68 2.62
1934 6719 3.316588 TGTGACAATTGCGGCTTAAGAAA 59.683 39.130 6.67 0.00 0.00 2.52
1935 6720 2.881513 TGTGACAATTGCGGCTTAAGAA 59.118 40.909 6.67 0.00 0.00 2.52
1936 6721 2.483877 CTGTGACAATTGCGGCTTAAGA 59.516 45.455 6.67 0.00 0.00 2.10
1937 6722 2.483877 TCTGTGACAATTGCGGCTTAAG 59.516 45.455 5.05 0.00 0.00 1.85
1938 6723 2.499197 TCTGTGACAATTGCGGCTTAA 58.501 42.857 5.05 0.00 0.00 1.85
1939 6724 2.177394 TCTGTGACAATTGCGGCTTA 57.823 45.000 5.05 0.00 0.00 3.09
1940 6725 1.317613 TTCTGTGACAATTGCGGCTT 58.682 45.000 5.05 0.00 0.00 4.35
1941 6726 1.001378 GTTTCTGTGACAATTGCGGCT 60.001 47.619 5.05 0.00 0.00 5.52
1942 6727 1.408422 GTTTCTGTGACAATTGCGGC 58.592 50.000 5.05 0.00 0.00 6.53
1943 6728 1.002900 ACGTTTCTGTGACAATTGCGG 60.003 47.619 5.05 0.00 0.00 5.69
1944 6729 2.383298 ACGTTTCTGTGACAATTGCG 57.617 45.000 5.05 0.00 0.00 4.85
1945 6730 3.434637 ACAACGTTTCTGTGACAATTGC 58.565 40.909 5.05 0.00 0.00 3.56
1946 6731 4.202158 CGAACAACGTTTCTGTGACAATTG 59.798 41.667 3.24 3.24 37.22 2.32
1947 6732 4.093703 TCGAACAACGTTTCTGTGACAATT 59.906 37.500 0.00 0.00 43.13 2.32
1948 6733 3.619483 TCGAACAACGTTTCTGTGACAAT 59.381 39.130 0.00 0.00 43.13 2.71
1949 6734 2.994578 TCGAACAACGTTTCTGTGACAA 59.005 40.909 0.00 0.00 43.13 3.18
1950 6735 2.608268 TCGAACAACGTTTCTGTGACA 58.392 42.857 0.00 0.00 43.13 3.58
1951 6736 3.854286 ATCGAACAACGTTTCTGTGAC 57.146 42.857 0.00 0.00 43.13 3.67
1952 6737 5.970140 TTTATCGAACAACGTTTCTGTGA 57.030 34.783 0.00 0.00 43.13 3.58
1953 6738 7.374754 TGATTTTTATCGAACAACGTTTCTGTG 59.625 33.333 0.00 0.00 43.13 3.66
1954 6739 7.411274 TGATTTTTATCGAACAACGTTTCTGT 58.589 30.769 0.00 0.00 43.13 3.41
1955 6740 7.830217 TGATTTTTATCGAACAACGTTTCTG 57.170 32.000 0.00 0.00 43.13 3.02
1958 6743 9.284594 CCATATGATTTTTATCGAACAACGTTT 57.715 29.630 3.65 0.00 43.13 3.60
1959 6744 7.431084 GCCATATGATTTTTATCGAACAACGTT 59.569 33.333 3.65 0.00 43.13 3.99
1960 6745 6.910433 GCCATATGATTTTTATCGAACAACGT 59.090 34.615 3.65 0.00 43.13 3.99
1961 6746 7.132213 AGCCATATGATTTTTATCGAACAACG 58.868 34.615 3.65 0.00 44.09 4.10
1964 6749 9.725019 AGATAGCCATATGATTTTTATCGAACA 57.275 29.630 3.65 0.00 0.00 3.18
1970 6755 9.925545 TGCCATAGATAGCCATATGATTTTTAT 57.074 29.630 3.65 0.00 32.21 1.40
1971 6756 9.925545 ATGCCATAGATAGCCATATGATTTTTA 57.074 29.630 3.65 0.00 32.21 1.52
1972 6757 8.834004 ATGCCATAGATAGCCATATGATTTTT 57.166 30.769 3.65 0.00 32.21 1.94
1973 6758 8.692710 CAATGCCATAGATAGCCATATGATTTT 58.307 33.333 3.65 0.00 32.21 1.82
1974 6759 8.057011 TCAATGCCATAGATAGCCATATGATTT 58.943 33.333 3.65 0.00 32.21 2.17
1975 6760 7.580007 TCAATGCCATAGATAGCCATATGATT 58.420 34.615 3.65 0.00 32.21 2.57
1976 6761 7.145474 TCAATGCCATAGATAGCCATATGAT 57.855 36.000 3.65 0.00 32.21 2.45
1977 6762 6.564557 TCAATGCCATAGATAGCCATATGA 57.435 37.500 3.65 0.00 32.21 2.15
1981 6766 8.162085 CCTTATATCAATGCCATAGATAGCCAT 58.838 37.037 0.00 0.00 0.00 4.40
1982 6767 7.348011 TCCTTATATCAATGCCATAGATAGCCA 59.652 37.037 0.00 0.00 0.00 4.75
1983 6768 7.739825 TCCTTATATCAATGCCATAGATAGCC 58.260 38.462 0.00 0.00 0.00 3.93
1984 6769 9.217278 CATCCTTATATCAATGCCATAGATAGC 57.783 37.037 0.00 0.00 0.00 2.97
1985 6770 9.217278 GCATCCTTATATCAATGCCATAGATAG 57.783 37.037 0.00 0.00 38.82 2.08
1986 6771 8.942033 AGCATCCTTATATCAATGCCATAGATA 58.058 33.333 2.78 0.00 44.34 1.98
1987 6772 7.813331 AGCATCCTTATATCAATGCCATAGAT 58.187 34.615 2.78 0.00 44.34 1.98
1988 6773 7.092757 TGAGCATCCTTATATCAATGCCATAGA 60.093 37.037 2.78 0.00 44.34 1.98
1989 6774 7.052248 TGAGCATCCTTATATCAATGCCATAG 58.948 38.462 2.78 0.00 44.34 2.23
1990 6775 6.961042 TGAGCATCCTTATATCAATGCCATA 58.039 36.000 2.78 0.00 44.34 2.74
1991 6776 5.823312 TGAGCATCCTTATATCAATGCCAT 58.177 37.500 2.78 0.00 44.34 4.40
1992 6777 5.245584 TGAGCATCCTTATATCAATGCCA 57.754 39.130 2.78 0.00 44.34 4.92
1993 6778 6.579666 TTTGAGCATCCTTATATCAATGCC 57.420 37.500 2.78 0.00 44.34 4.40
1998 6783 9.851686 ACAGTTAATTTGAGCATCCTTATATCA 57.148 29.630 0.00 0.00 0.00 2.15
2003 6788 9.515226 AGTTTACAGTTAATTTGAGCATCCTTA 57.485 29.630 0.00 0.00 0.00 2.69
2004 6789 8.299570 CAGTTTACAGTTAATTTGAGCATCCTT 58.700 33.333 0.00 0.00 0.00 3.36
2005 6790 7.575720 GCAGTTTACAGTTAATTTGAGCATCCT 60.576 37.037 0.00 0.00 0.00 3.24
2006 6791 6.528072 GCAGTTTACAGTTAATTTGAGCATCC 59.472 38.462 0.00 0.00 0.00 3.51
2007 6792 7.083858 TGCAGTTTACAGTTAATTTGAGCATC 58.916 34.615 0.00 0.00 0.00 3.91
2008 6793 6.980593 TGCAGTTTACAGTTAATTTGAGCAT 58.019 32.000 0.00 0.00 0.00 3.79
2009 6794 6.384258 TGCAGTTTACAGTTAATTTGAGCA 57.616 33.333 0.00 0.00 0.00 4.26
2010 6795 8.964420 TTATGCAGTTTACAGTTAATTTGAGC 57.036 30.769 0.00 0.00 0.00 4.26
2025 6810 9.260002 CACCTTCAATTAAGTTTTATGCAGTTT 57.740 29.630 0.00 0.00 32.89 2.66
2026 6811 7.384932 GCACCTTCAATTAAGTTTTATGCAGTT 59.615 33.333 0.00 0.00 32.89 3.16
2027 6812 6.868339 GCACCTTCAATTAAGTTTTATGCAGT 59.132 34.615 0.00 0.00 32.89 4.40
2028 6813 6.867816 TGCACCTTCAATTAAGTTTTATGCAG 59.132 34.615 0.00 0.00 32.89 4.41
2029 6814 6.753180 TGCACCTTCAATTAAGTTTTATGCA 58.247 32.000 0.00 0.00 32.89 3.96
2030 6815 7.090173 TCTGCACCTTCAATTAAGTTTTATGC 58.910 34.615 0.00 0.00 32.89 3.14
2031 6816 8.915654 GTTCTGCACCTTCAATTAAGTTTTATG 58.084 33.333 0.00 0.00 32.89 1.90
2032 6817 8.860088 AGTTCTGCACCTTCAATTAAGTTTTAT 58.140 29.630 0.00 0.00 32.89 1.40
2033 6818 8.232913 AGTTCTGCACCTTCAATTAAGTTTTA 57.767 30.769 0.00 0.00 32.89 1.52
2034 6819 7.112452 AGTTCTGCACCTTCAATTAAGTTTT 57.888 32.000 0.00 0.00 32.89 2.43
2035 6820 6.715347 AGTTCTGCACCTTCAATTAAGTTT 57.285 33.333 0.00 0.00 32.89 2.66
2036 6821 7.817418 TTAGTTCTGCACCTTCAATTAAGTT 57.183 32.000 0.00 0.00 32.89 2.66
2037 6822 7.502561 ACTTTAGTTCTGCACCTTCAATTAAGT 59.497 33.333 0.00 0.00 32.89 2.24
2038 6823 7.805071 CACTTTAGTTCTGCACCTTCAATTAAG 59.195 37.037 0.00 0.00 34.73 1.85
2039 6824 7.500892 TCACTTTAGTTCTGCACCTTCAATTAA 59.499 33.333 0.00 0.00 0.00 1.40
2040 6825 6.995686 TCACTTTAGTTCTGCACCTTCAATTA 59.004 34.615 0.00 0.00 0.00 1.40
2041 6826 5.827797 TCACTTTAGTTCTGCACCTTCAATT 59.172 36.000 0.00 0.00 0.00 2.32
2042 6827 5.239525 GTCACTTTAGTTCTGCACCTTCAAT 59.760 40.000 0.00 0.00 0.00 2.57
2043 6828 4.574828 GTCACTTTAGTTCTGCACCTTCAA 59.425 41.667 0.00 0.00 0.00 2.69
2044 6829 4.127171 GTCACTTTAGTTCTGCACCTTCA 58.873 43.478 0.00 0.00 0.00 3.02
2045 6830 4.127171 TGTCACTTTAGTTCTGCACCTTC 58.873 43.478 0.00 0.00 0.00 3.46
2046 6831 4.150897 TGTCACTTTAGTTCTGCACCTT 57.849 40.909 0.00 0.00 0.00 3.50
2047 6832 3.838244 TGTCACTTTAGTTCTGCACCT 57.162 42.857 0.00 0.00 0.00 4.00
2048 6833 4.893424 TTTGTCACTTTAGTTCTGCACC 57.107 40.909 0.00 0.00 0.00 5.01
2049 6834 7.861630 TCTTATTTGTCACTTTAGTTCTGCAC 58.138 34.615 0.00 0.00 0.00 4.57
2050 6835 8.445275 TTCTTATTTGTCACTTTAGTTCTGCA 57.555 30.769 0.00 0.00 0.00 4.41
2051 6836 9.170584 GTTTCTTATTTGTCACTTTAGTTCTGC 57.829 33.333 0.00 0.00 0.00 4.26
2055 6840 9.965824 CCATGTTTCTTATTTGTCACTTTAGTT 57.034 29.630 0.00 0.00 0.00 2.24
2056 6841 9.349713 TCCATGTTTCTTATTTGTCACTTTAGT 57.650 29.630 0.00 0.00 0.00 2.24
2059 6844 9.696917 GAATCCATGTTTCTTATTTGTCACTTT 57.303 29.630 0.00 0.00 0.00 2.66
2060 6845 8.306761 GGAATCCATGTTTCTTATTTGTCACTT 58.693 33.333 0.00 0.00 0.00 3.16
2061 6846 7.671398 AGGAATCCATGTTTCTTATTTGTCACT 59.329 33.333 0.61 0.00 0.00 3.41
2062 6847 7.756722 CAGGAATCCATGTTTCTTATTTGTCAC 59.243 37.037 0.61 0.00 0.00 3.67
2063 6848 7.669304 TCAGGAATCCATGTTTCTTATTTGTCA 59.331 33.333 0.61 0.00 0.00 3.58
2064 6849 8.055279 TCAGGAATCCATGTTTCTTATTTGTC 57.945 34.615 0.61 0.00 0.00 3.18
2065 6850 8.421249 TTCAGGAATCCATGTTTCTTATTTGT 57.579 30.769 0.61 0.00 0.00 2.83
2066 6851 9.880157 ATTTCAGGAATCCATGTTTCTTATTTG 57.120 29.630 0.61 0.00 0.00 2.32
2070 6855 9.973661 TTCTATTTCAGGAATCCATGTTTCTTA 57.026 29.630 0.61 0.00 0.00 2.10
2071 6856 8.884124 TTCTATTTCAGGAATCCATGTTTCTT 57.116 30.769 0.61 0.00 0.00 2.52
2072 6857 8.112183 ACTTCTATTTCAGGAATCCATGTTTCT 58.888 33.333 0.61 0.00 0.00 2.52
2073 6858 8.186821 CACTTCTATTTCAGGAATCCATGTTTC 58.813 37.037 0.61 0.00 0.00 2.78
2074 6859 7.123247 CCACTTCTATTTCAGGAATCCATGTTT 59.877 37.037 0.61 0.00 0.00 2.83
2075 6860 6.604795 CCACTTCTATTTCAGGAATCCATGTT 59.395 38.462 0.61 0.00 0.00 2.71
2076 6861 6.125029 CCACTTCTATTTCAGGAATCCATGT 58.875 40.000 0.61 0.00 0.00 3.21
2077 6862 6.125029 ACCACTTCTATTTCAGGAATCCATG 58.875 40.000 0.61 0.00 0.00 3.66
2078 6863 6.332976 ACCACTTCTATTTCAGGAATCCAT 57.667 37.500 0.61 0.00 0.00 3.41
2079 6864 5.779241 ACCACTTCTATTTCAGGAATCCA 57.221 39.130 0.61 0.00 0.00 3.41
2080 6865 6.659242 TCAAACCACTTCTATTTCAGGAATCC 59.341 38.462 0.00 0.00 0.00 3.01
2081 6866 7.687941 TCAAACCACTTCTATTTCAGGAATC 57.312 36.000 0.00 0.00 0.00 2.52
2082 6867 7.177392 CCTTCAAACCACTTCTATTTCAGGAAT 59.823 37.037 0.00 0.00 0.00 3.01
2083 6868 6.490040 CCTTCAAACCACTTCTATTTCAGGAA 59.510 38.462 0.00 0.00 0.00 3.36
2084 6869 6.003950 CCTTCAAACCACTTCTATTTCAGGA 58.996 40.000 0.00 0.00 0.00 3.86
2085 6870 5.183904 CCCTTCAAACCACTTCTATTTCAGG 59.816 44.000 0.00 0.00 0.00 3.86
2086 6871 6.003950 TCCCTTCAAACCACTTCTATTTCAG 58.996 40.000 0.00 0.00 0.00 3.02
2087 6872 5.947663 TCCCTTCAAACCACTTCTATTTCA 58.052 37.500 0.00 0.00 0.00 2.69
2088 6873 6.567891 CGTTCCCTTCAAACCACTTCTATTTC 60.568 42.308 0.00 0.00 0.00 2.17
2089 6874 5.240844 CGTTCCCTTCAAACCACTTCTATTT 59.759 40.000 0.00 0.00 0.00 1.40
2090 6875 4.760204 CGTTCCCTTCAAACCACTTCTATT 59.240 41.667 0.00 0.00 0.00 1.73
2091 6876 4.324267 CGTTCCCTTCAAACCACTTCTAT 58.676 43.478 0.00 0.00 0.00 1.98
2092 6877 3.495453 CCGTTCCCTTCAAACCACTTCTA 60.495 47.826 0.00 0.00 0.00 2.10
2093 6878 2.572290 CGTTCCCTTCAAACCACTTCT 58.428 47.619 0.00 0.00 0.00 2.85
2094 6879 1.607148 CCGTTCCCTTCAAACCACTTC 59.393 52.381 0.00 0.00 0.00 3.01
2095 6880 1.213430 TCCGTTCCCTTCAAACCACTT 59.787 47.619 0.00 0.00 0.00 3.16
2096 6881 0.841289 TCCGTTCCCTTCAAACCACT 59.159 50.000 0.00 0.00 0.00 4.00
2097 6882 1.235724 CTCCGTTCCCTTCAAACCAC 58.764 55.000 0.00 0.00 0.00 4.16
2098 6883 0.841289 ACTCCGTTCCCTTCAAACCA 59.159 50.000 0.00 0.00 0.00 3.67
2099 6884 1.878088 GAACTCCGTTCCCTTCAAACC 59.122 52.381 0.00 0.00 36.65 3.27
2100 6885 2.548480 CTGAACTCCGTTCCCTTCAAAC 59.452 50.000 4.48 0.00 41.35 2.93
2101 6886 2.171870 ACTGAACTCCGTTCCCTTCAAA 59.828 45.455 4.48 0.00 41.35 2.69
2102 6887 1.766496 ACTGAACTCCGTTCCCTTCAA 59.234 47.619 4.48 0.00 41.35 2.69
2103 6888 1.420430 ACTGAACTCCGTTCCCTTCA 58.580 50.000 4.48 0.00 41.35 3.02
2104 6889 2.143925 CAACTGAACTCCGTTCCCTTC 58.856 52.381 4.48 0.00 41.35 3.46
2105 6890 1.814248 GCAACTGAACTCCGTTCCCTT 60.814 52.381 4.48 0.00 41.35 3.95
2106 6891 0.250338 GCAACTGAACTCCGTTCCCT 60.250 55.000 4.48 0.00 41.35 4.20
2107 6892 1.235281 GGCAACTGAACTCCGTTCCC 61.235 60.000 4.48 0.00 41.35 3.97
2108 6893 1.566018 CGGCAACTGAACTCCGTTCC 61.566 60.000 4.48 0.00 41.35 3.62
2109 6894 1.566018 CCGGCAACTGAACTCCGTTC 61.566 60.000 0.00 0.00 42.26 3.95
2110 6895 1.597027 CCGGCAACTGAACTCCGTT 60.597 57.895 0.00 0.00 40.23 4.44
2111 6896 2.030562 CCGGCAACTGAACTCCGT 59.969 61.111 0.00 0.00 40.23 4.69
2112 6897 2.027625 GACCGGCAACTGAACTCCG 61.028 63.158 0.00 0.00 41.41 4.63
2113 6898 0.951040 CAGACCGGCAACTGAACTCC 60.951 60.000 15.72 0.00 36.38 3.85
2114 6899 0.033504 TCAGACCGGCAACTGAACTC 59.966 55.000 19.42 0.04 39.68 3.01
2115 6900 0.249911 GTCAGACCGGCAACTGAACT 60.250 55.000 22.06 0.00 43.29 3.01
2116 6901 0.249911 AGTCAGACCGGCAACTGAAC 60.250 55.000 22.06 17.02 43.29 3.18
2117 6902 0.033504 GAGTCAGACCGGCAACTGAA 59.966 55.000 22.06 9.02 43.29 3.02
2118 6903 1.112916 TGAGTCAGACCGGCAACTGA 61.113 55.000 18.31 18.31 40.22 3.41
2119 6904 0.946221 GTGAGTCAGACCGGCAACTG 60.946 60.000 14.94 14.94 35.72 3.16
2120 6905 1.367840 GTGAGTCAGACCGGCAACT 59.632 57.895 0.00 0.00 0.00 3.16
2121 6906 1.668151 GGTGAGTCAGACCGGCAAC 60.668 63.158 0.00 0.00 0.00 4.17
2122 6907 1.691195 TTGGTGAGTCAGACCGGCAA 61.691 55.000 0.00 0.00 36.12 4.52
2123 6908 1.691195 TTTGGTGAGTCAGACCGGCA 61.691 55.000 0.00 0.00 36.12 5.69
2124 6909 0.534203 TTTTGGTGAGTCAGACCGGC 60.534 55.000 0.00 0.00 36.12 6.13
2125 6910 1.070134 TCTTTTGGTGAGTCAGACCGG 59.930 52.381 0.00 0.00 36.12 5.28
2126 6911 2.526304 TCTTTTGGTGAGTCAGACCG 57.474 50.000 0.00 0.00 36.12 4.79
2127 6912 4.453819 CAGATTCTTTTGGTGAGTCAGACC 59.546 45.833 0.00 0.00 0.00 3.85
2128 6913 4.083590 GCAGATTCTTTTGGTGAGTCAGAC 60.084 45.833 0.00 0.00 0.00 3.51
2129 6914 4.067896 GCAGATTCTTTTGGTGAGTCAGA 58.932 43.478 0.00 0.00 0.00 3.27
2130 6915 3.190118 GGCAGATTCTTTTGGTGAGTCAG 59.810 47.826 0.00 0.00 0.00 3.51
2131 6916 3.149196 GGCAGATTCTTTTGGTGAGTCA 58.851 45.455 0.00 0.00 0.00 3.41
2151 6936 2.242043 AGTTCAACCTGAAAGCCATGG 58.758 47.619 7.63 7.63 38.22 3.66
2220 7005 0.886490 CTCTGCCGGCACACTTTCTT 60.886 55.000 29.03 0.00 0.00 2.52
2386 7174 5.738619 AATTTTGGGAACAGGTTATGGAC 57.261 39.130 0.00 0.00 44.54 4.02
2519 7307 6.920569 AGTAGTTCACTTGTCGAAAACATT 57.079 33.333 0.00 0.00 37.82 2.71
2675 9120 1.414158 TCCAGCTCCAGGTATAGTGC 58.586 55.000 0.00 0.00 0.00 4.40
2706 9151 2.185350 CCTGAATCCGCACTCGCT 59.815 61.111 0.00 0.00 35.30 4.93
2785 9230 3.582647 TCCCAAGTTCATAGAGCAAGTCA 59.417 43.478 0.00 0.00 0.00 3.41
2831 10718 5.696724 GGTCAATCGATTATTAGACCAGTGG 59.303 44.000 27.80 7.91 41.08 4.00
2832 10719 5.402568 CGGTCAATCGATTATTAGACCAGTG 59.597 44.000 29.89 18.10 41.26 3.66
2843 10730 5.279255 TCCATAAACCGGTCAATCGATTA 57.721 39.130 8.04 0.42 0.00 1.75
2851 10738 7.704578 TCATTTTTATTCCATAAACCGGTCA 57.295 32.000 8.04 0.00 34.68 4.02
2871 10759 6.968904 GCGTGACATTGTTCAGATAATTCATT 59.031 34.615 0.00 0.00 0.00 2.57
2875 10763 5.878332 TGCGTGACATTGTTCAGATAATT 57.122 34.783 0.00 0.00 0.00 1.40
2890 10778 0.380378 TCCAGCTTGTTTTGCGTGAC 59.620 50.000 0.00 0.00 35.28 3.67
2892 10780 0.594796 GGTCCAGCTTGTTTTGCGTG 60.595 55.000 0.00 0.00 35.28 5.34
2894 10782 1.007387 GGGTCCAGCTTGTTTTGCG 60.007 57.895 0.00 0.00 35.28 4.85
2908 10796 1.836383 CACTCGCTATAACACGGGTC 58.164 55.000 0.00 0.00 42.08 4.46
2910 10798 1.206745 CGCACTCGCTATAACACGGG 61.207 60.000 0.00 0.00 35.30 5.28
2914 10802 3.430333 TGATTCGCACTCGCTATAACA 57.570 42.857 0.00 0.00 35.30 2.41
2915 10803 3.550275 TGTTGATTCGCACTCGCTATAAC 59.450 43.478 0.00 0.00 35.30 1.89
2918 10806 2.293677 TGTTGATTCGCACTCGCTAT 57.706 45.000 0.00 0.00 35.30 2.97
2923 10811 2.095567 AGTTGCATGTTGATTCGCACTC 60.096 45.455 0.00 0.00 33.29 3.51
2924 10812 1.881973 AGTTGCATGTTGATTCGCACT 59.118 42.857 0.00 0.00 33.29 4.40
2936 10824 3.817084 TGAAGAAGTTGAGGAGTTGCATG 59.183 43.478 0.00 0.00 0.00 4.06
2937 10825 4.090761 TGAAGAAGTTGAGGAGTTGCAT 57.909 40.909 0.00 0.00 0.00 3.96
2941 10829 5.183228 TCGTTTTGAAGAAGTTGAGGAGTT 58.817 37.500 0.00 0.00 0.00 3.01
2952 10840 6.658831 CAAGTTGATAGCTCGTTTTGAAGAA 58.341 36.000 0.00 0.00 0.00 2.52
2954 10842 4.848299 GCAAGTTGATAGCTCGTTTTGAAG 59.152 41.667 7.16 0.00 0.00 3.02
2955 10843 4.320202 GGCAAGTTGATAGCTCGTTTTGAA 60.320 41.667 7.16 0.00 0.00 2.69
2956 10844 3.188460 GGCAAGTTGATAGCTCGTTTTGA 59.812 43.478 7.16 0.00 0.00 2.69
2957 10845 3.058293 TGGCAAGTTGATAGCTCGTTTTG 60.058 43.478 7.16 0.00 0.00 2.44
2958 10846 3.058224 GTGGCAAGTTGATAGCTCGTTTT 60.058 43.478 7.16 0.00 0.00 2.43
2983 10871 1.993956 TTGAAATCACCACCCACCAG 58.006 50.000 0.00 0.00 0.00 4.00
3032 10921 0.396435 AGTCCAGTCAATGTTGGCGA 59.604 50.000 0.00 0.00 37.98 5.54
3310 11201 0.872388 GTCTCGAACCATGCCGTTTT 59.128 50.000 0.00 0.00 0.00 2.43
3723 11614 7.126421 AGACCATGATCTGATTGTAACCTAAGT 59.874 37.037 0.00 0.00 0.00 2.24
3809 11700 1.964373 GCTTTTTCCTCGGCCGTCA 60.964 57.895 27.15 5.52 0.00 4.35
3845 11736 2.440247 CGGATGGGTCCCAAAGGC 60.440 66.667 16.55 4.79 41.83 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.