Multiple sequence alignment - TraesCS3D01G187300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G187300 chr3D 100.000 9403 0 0 1 9403 173716635 173707233 0.000000e+00 17365.0
1 TraesCS3D01G187300 chr3D 90.563 551 49 1 8856 9403 210625179 210625729 0.000000e+00 726.0
2 TraesCS3D01G187300 chr3D 89.599 548 56 1 8856 9403 168497299 168497845 0.000000e+00 695.0
3 TraesCS3D01G187300 chr3D 92.623 366 26 1 4473 4837 36157142 36157507 8.360000e-145 525.0
4 TraesCS3D01G187300 chr3D 95.833 240 10 0 3475 3714 216472102 216471863 1.150000e-103 388.0
5 TraesCS3D01G187300 chr3D 92.632 190 14 0 8673 8862 168497969 168498158 3.350000e-69 274.0
6 TraesCS3D01G187300 chr3D 78.164 403 61 12 1379 1762 501271450 501271056 2.040000e-56 231.0
7 TraesCS3D01G187300 chr3D 76.685 356 72 9 3115 3466 582893090 582892742 4.480000e-43 187.0
8 TraesCS3D01G187300 chr3B 96.402 4502 85 20 13 4471 252597140 252592673 0.000000e+00 7345.0
9 TraesCS3D01G187300 chr3B 97.017 4191 82 6 4472 8633 252592582 252588406 0.000000e+00 7007.0
10 TraesCS3D01G187300 chr3B 95.276 254 9 1 3466 3716 820413613 820413866 5.290000e-107 399.0
11 TraesCS3D01G187300 chr3B 76.700 691 101 30 4843 5520 631574081 631574724 7.040000e-86 329.0
12 TraesCS3D01G187300 chr3B 92.593 189 13 1 8673 8861 424124929 424125116 4.330000e-68 270.0
13 TraesCS3D01G187300 chr3A 94.934 3494 111 30 1 3451 212133068 212129598 0.000000e+00 5411.0
14 TraesCS3D01G187300 chr3A 96.903 2583 61 7 6074 8649 212115022 212112452 0.000000e+00 4309.0
15 TraesCS3D01G187300 chr3A 90.571 1050 75 7 5039 6088 212122662 212121637 0.000000e+00 1369.0
16 TraesCS3D01G187300 chr3A 90.723 733 56 8 3740 4471 585566521 585565800 0.000000e+00 966.0
17 TraesCS3D01G187300 chr3A 90.744 551 48 1 8856 9403 309346936 309346386 0.000000e+00 732.0
18 TraesCS3D01G187300 chr3A 76.978 417 90 6 4841 5255 17897453 17897865 5.680000e-57 233.0
19 TraesCS3D01G187300 chr3A 79.618 314 56 8 3113 3422 447004 446695 1.590000e-52 219.0
20 TraesCS3D01G187300 chr3A 90.000 170 11 3 4874 5037 212129578 212129409 2.060000e-51 215.0
21 TraesCS3D01G187300 chr7D 93.458 749 42 6 3726 4471 43373353 43372609 0.000000e+00 1105.0
22 TraesCS3D01G187300 chr7D 91.281 734 48 9 3747 4471 519828302 519827576 0.000000e+00 987.0
23 TraesCS3D01G187300 chr7D 89.964 548 55 0 8856 9403 295314791 295315338 0.000000e+00 708.0
24 TraesCS3D01G187300 chr7D 90.037 542 52 1 8864 9403 135397592 135398133 0.000000e+00 701.0
25 TraesCS3D01G187300 chr7D 89.834 541 54 1 8864 9403 465473175 465473715 0.000000e+00 693.0
26 TraesCS3D01G187300 chr7D 96.386 249 8 1 3466 3714 204017343 204017590 8.790000e-110 409.0
27 TraesCS3D01G187300 chr7D 94.378 249 14 0 3466 3714 72121052 72120804 5.330000e-102 383.0
28 TraesCS3D01G187300 chr7D 80.000 445 71 12 4843 5278 295340718 295340283 7.090000e-81 313.0
29 TraesCS3D01G187300 chr7D 82.913 357 40 7 3113 3466 295341062 295340724 1.530000e-77 302.0
30 TraesCS3D01G187300 chr7D 81.006 358 57 7 3113 3467 611313052 611313401 3.350000e-69 274.0
31 TraesCS3D01G187300 chr7D 96.875 32 1 0 5005 5036 183791554 183791585 5.000000e-03 54.7
32 TraesCS3D01G187300 chr4D 88.152 920 91 12 7503 8404 503620805 503621724 0.000000e+00 1079.0
33 TraesCS3D01G187300 chr4D 87.200 750 64 23 6364 7085 503619111 503619856 0.000000e+00 824.0
34 TraesCS3D01G187300 chr4D 89.149 470 49 2 2516 2984 503618556 503619024 1.360000e-162 584.0
35 TraesCS3D01G187300 chr4D 88.480 408 38 6 7081 7481 503619891 503620296 1.420000e-132 484.0
36 TraesCS3D01G187300 chr4D 81.793 357 56 7 3115 3467 449206908 449206557 3.320000e-74 291.0
37 TraesCS3D01G187300 chr4D 85.915 284 20 11 2192 2465 503618096 503618369 1.550000e-72 285.0
38 TraesCS3D01G187300 chr4D 81.503 346 54 7 4940 5278 478220997 478220655 9.300000e-70 276.0
39 TraesCS3D01G187300 chr4D 75.424 354 78 7 3113 3464 165889865 165890211 7.560000e-36 163.0
40 TraesCS3D01G187300 chr5A 87.807 935 89 16 7493 8402 688141621 688142555 0.000000e+00 1072.0
41 TraesCS3D01G187300 chr5A 87.049 749 66 25 6360 7085 688140224 688140964 0.000000e+00 817.0
42 TraesCS3D01G187300 chr5A 90.328 548 52 1 8856 9403 239404947 239405493 0.000000e+00 717.0
43 TraesCS3D01G187300 chr5A 88.745 462 52 0 2516 2977 688139659 688140120 4.930000e-157 566.0
44 TraesCS3D01G187300 chr5A 87.901 405 39 6 7085 7481 688141004 688141406 1.430000e-127 468.0
45 TraesCS3D01G187300 chr5A 95.492 244 11 0 3466 3709 36245026 36244783 3.180000e-104 390.0
46 TraesCS3D01G187300 chr5A 83.566 286 25 9 2192 2465 688139255 688139530 2.030000e-61 248.0
47 TraesCS3D01G187300 chr5A 94.595 37 1 1 5048 5083 708089649 708089685 1.000000e-03 56.5
48 TraesCS3D01G187300 chr4B 87.500 928 94 15 7493 8402 649474195 649475118 0.000000e+00 1051.0
49 TraesCS3D01G187300 chr4B 84.910 835 79 29 6277 7083 649472740 649473555 0.000000e+00 800.0
50 TraesCS3D01G187300 chr4B 88.326 454 53 0 2524 2977 649472253 649472706 6.420000e-151 545.0
51 TraesCS3D01G187300 chr4B 91.421 373 30 2 4466 4837 535326662 535327033 2.340000e-140 510.0
52 TraesCS3D01G187300 chr4B 87.864 412 35 8 7083 7481 649473600 649474009 3.980000e-128 470.0
53 TraesCS3D01G187300 chr4B 86.071 280 19 10 2192 2465 649471850 649472115 5.560000e-72 283.0
54 TraesCS3D01G187300 chr4B 91.710 193 14 2 8670 8861 100949776 100949585 5.600000e-67 267.0
55 TraesCS3D01G187300 chr4B 92.063 189 15 0 8674 8862 564157155 564157343 5.600000e-67 267.0
56 TraesCS3D01G187300 chr4B 75.862 290 63 6 3119 3406 474334563 474334279 3.540000e-29 141.0
57 TraesCS3D01G187300 chr2B 92.224 733 48 8 3739 4469 418961001 418961726 0.000000e+00 1029.0
58 TraesCS3D01G187300 chr2B 80.000 430 72 11 4843 5265 342301062 342300640 1.190000e-78 305.0
59 TraesCS3D01G187300 chr2B 92.105 190 15 0 8673 8862 221095974 221096163 1.560000e-67 268.0
60 TraesCS3D01G187300 chr5D 91.951 733 55 4 3740 4471 376704121 376703392 0.000000e+00 1024.0
61 TraesCS3D01G187300 chr5D 92.473 372 27 1 4466 4836 214925485 214925856 1.800000e-146 531.0
62 TraesCS3D01G187300 chr5D 75.567 397 79 14 4837 5224 80444443 80444830 7.500000e-41 180.0
63 TraesCS3D01G187300 chr5D 78.731 268 49 8 3113 3375 464622208 464621944 1.260000e-38 172.0
64 TraesCS3D01G187300 chr5D 81.343 134 24 1 3113 3245 519810497 519810364 3.590000e-19 108.0
65 TraesCS3D01G187300 chr5D 87.952 83 9 1 3103 3184 480840557 480840639 7.770000e-16 97.1
66 TraesCS3D01G187300 chr2D 91.293 735 56 6 3742 4471 19606254 19606985 0.000000e+00 996.0
67 TraesCS3D01G187300 chr2D 91.489 376 28 4 4466 4837 19607071 19607446 1.810000e-141 514.0
68 TraesCS3D01G187300 chr2D 92.593 189 14 0 8674 8862 343674337 343674149 1.200000e-68 272.0
69 TraesCS3D01G187300 chr2D 79.778 361 64 7 4843 5196 271510482 271510840 4.360000e-63 254.0
70 TraesCS3D01G187300 chr2D 78.286 350 67 7 3114 3459 544207202 544207546 5.720000e-52 217.0
71 TraesCS3D01G187300 chr2D 78.814 118 21 4 4960 5074 112182611 112182727 1.010000e-09 76.8
72 TraesCS3D01G187300 chr1B 91.221 729 59 5 3745 4471 629719791 629720516 0.000000e+00 987.0
73 TraesCS3D01G187300 chr1B 95.528 246 10 1 3470 3715 497800841 497801085 8.850000e-105 392.0
74 TraesCS3D01G187300 chr1B 76.940 451 83 15 4843 5281 418832919 418832478 4.390000e-58 237.0
75 TraesCS3D01G187300 chr1B 79.389 131 22 5 3116 3243 300239227 300239099 4.680000e-13 87.9
76 TraesCS3D01G187300 chr1B 85.185 54 5 3 5027 5078 549732036 549731984 1.700000e-02 52.8
77 TraesCS3D01G187300 chr2A 91.020 735 59 5 3740 4471 423780792 423781522 0.000000e+00 985.0
78 TraesCS3D01G187300 chr2A 92.105 190 14 1 8673 8862 231352491 231352303 5.600000e-67 267.0
79 TraesCS3D01G187300 chr4A 90.494 547 52 0 8857 9403 235652574 235653120 0.000000e+00 723.0
80 TraesCS3D01G187300 chr1D 90.018 541 54 0 8863 9403 19798810 19798270 0.000000e+00 701.0
81 TraesCS3D01G187300 chr1D 82.445 319 54 2 3113 3429 199327762 199327444 2.590000e-70 278.0
82 TraesCS3D01G187300 chr1D 79.940 334 63 4 3135 3466 298622352 298622021 9.430000e-60 243.0
83 TraesCS3D01G187300 chr1D 75.458 273 51 11 3114 3376 175822442 175822708 1.660000e-22 119.0
84 TraesCS3D01G187300 chr1D 92.000 50 2 2 3113 3161 432551862 432551814 1.690000e-07 69.4
85 TraesCS3D01G187300 chr7B 92.896 366 23 2 4472 4836 425362367 425362004 6.470000e-146 529.0
86 TraesCS3D01G187300 chr7B 81.941 443 72 6 4843 5279 339219105 339218665 1.490000e-97 368.0
87 TraesCS3D01G187300 chr7B 82.808 349 56 3 3113 3458 354288692 354288345 9.170000e-80 309.0
88 TraesCS3D01G187300 chr7B 92.063 189 15 0 8674 8862 262087689 262087877 5.600000e-67 267.0
89 TraesCS3D01G187300 chr7A 91.489 376 30 2 4466 4839 83322554 83322929 5.030000e-142 516.0
90 TraesCS3D01G187300 chr7A 83.989 356 51 5 3113 3465 398906417 398906769 4.210000e-88 337.0
91 TraesCS3D01G187300 chr7A 81.564 358 54 8 3114 3467 701366590 701366939 1.550000e-72 285.0
92 TraesCS3D01G187300 chr6D 91.200 375 32 1 4466 4839 2480415 2480789 8.420000e-140 508.0
93 TraesCS3D01G187300 chr6D 94.758 248 13 0 3466 3713 436684214 436683967 4.120000e-103 387.0
94 TraesCS3D01G187300 chr6D 93.976 249 15 0 3466 3714 140015391 140015143 2.480000e-100 377.0
95 TraesCS3D01G187300 chr6D 92.593 189 13 1 8674 8862 263002590 263002403 4.330000e-68 270.0
96 TraesCS3D01G187300 chr5B 91.444 374 27 4 4472 4843 440565817 440565447 8.420000e-140 508.0
97 TraesCS3D01G187300 chr5B 76.127 754 151 21 4851 5595 687755978 687756711 1.490000e-97 368.0
98 TraesCS3D01G187300 chr5B 84.437 302 40 4 4842 5137 250229708 250230008 3.320000e-74 291.0
99 TraesCS3D01G187300 chr5B 78.595 299 58 6 3121 3416 599700037 599700332 9.640000e-45 193.0
100 TraesCS3D01G187300 chr5B 77.640 161 31 5 3259 3415 436467991 436467832 1.010000e-14 93.5
101 TraesCS3D01G187300 chr6B 77.598 433 70 13 1378 1791 535442727 535443151 4.390000e-58 237.0
102 TraesCS3D01G187300 chr6B 82.000 250 42 2 3113 3361 506030133 506030380 9.570000e-50 209.0
103 TraesCS3D01G187300 chr1A 82.313 147 26 0 3228 3374 438651318 438651172 2.760000e-25 128.0
104 TraesCS3D01G187300 chr1A 77.391 115 22 4 3277 3390 99141019 99140908 2.190000e-06 65.8
105 TraesCS3D01G187300 chr6A 86.316 95 10 3 3113 3205 27189279 27189372 6.010000e-17 100.0
106 TraesCS3D01G187300 chr6A 89.583 48 3 2 3115 3161 39930317 39930271 1.020000e-04 60.2
107 TraesCS3D01G187300 chrUn 92.683 41 3 0 3110 3150 278073236 278073276 1.020000e-04 60.2
108 TraesCS3D01G187300 chrUn 100.000 31 0 0 3113 3143 102499727 102499697 3.670000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G187300 chr3D 173707233 173716635 9402 True 17365.0 17365 100.0000 1 9403 1 chr3D.!!$R1 9402
1 TraesCS3D01G187300 chr3D 210625179 210625729 550 False 726.0 726 90.5630 8856 9403 1 chr3D.!!$F2 547
2 TraesCS3D01G187300 chr3D 168497299 168498158 859 False 484.5 695 91.1155 8673 9403 2 chr3D.!!$F3 730
3 TraesCS3D01G187300 chr3B 252588406 252597140 8734 True 7176.0 7345 96.7095 13 8633 2 chr3B.!!$R1 8620
4 TraesCS3D01G187300 chr3B 631574081 631574724 643 False 329.0 329 76.7000 4843 5520 1 chr3B.!!$F2 677
5 TraesCS3D01G187300 chr3A 212112452 212115022 2570 True 4309.0 4309 96.9030 6074 8649 1 chr3A.!!$R2 2575
6 TraesCS3D01G187300 chr3A 212129409 212133068 3659 True 2813.0 5411 92.4670 1 5037 2 chr3A.!!$R6 5036
7 TraesCS3D01G187300 chr3A 212121637 212122662 1025 True 1369.0 1369 90.5710 5039 6088 1 chr3A.!!$R3 1049
8 TraesCS3D01G187300 chr3A 585565800 585566521 721 True 966.0 966 90.7230 3740 4471 1 chr3A.!!$R5 731
9 TraesCS3D01G187300 chr3A 309346386 309346936 550 True 732.0 732 90.7440 8856 9403 1 chr3A.!!$R4 547
10 TraesCS3D01G187300 chr7D 43372609 43373353 744 True 1105.0 1105 93.4580 3726 4471 1 chr7D.!!$R1 745
11 TraesCS3D01G187300 chr7D 519827576 519828302 726 True 987.0 987 91.2810 3747 4471 1 chr7D.!!$R3 724
12 TraesCS3D01G187300 chr7D 295314791 295315338 547 False 708.0 708 89.9640 8856 9403 1 chr7D.!!$F4 547
13 TraesCS3D01G187300 chr7D 135397592 135398133 541 False 701.0 701 90.0370 8864 9403 1 chr7D.!!$F1 539
14 TraesCS3D01G187300 chr7D 465473175 465473715 540 False 693.0 693 89.8340 8864 9403 1 chr7D.!!$F5 539
15 TraesCS3D01G187300 chr7D 295340283 295341062 779 True 307.5 313 81.4565 3113 5278 2 chr7D.!!$R4 2165
16 TraesCS3D01G187300 chr4D 503618096 503621724 3628 False 651.2 1079 87.7792 2192 8404 5 chr4D.!!$F2 6212
17 TraesCS3D01G187300 chr5A 239404947 239405493 546 False 717.0 717 90.3280 8856 9403 1 chr5A.!!$F1 547
18 TraesCS3D01G187300 chr5A 688139255 688142555 3300 False 634.2 1072 87.0136 2192 8402 5 chr5A.!!$F3 6210
19 TraesCS3D01G187300 chr4B 649471850 649475118 3268 False 629.8 1051 86.9342 2192 8402 5 chr4B.!!$F3 6210
20 TraesCS3D01G187300 chr2B 418961001 418961726 725 False 1029.0 1029 92.2240 3739 4469 1 chr2B.!!$F2 730
21 TraesCS3D01G187300 chr5D 376703392 376704121 729 True 1024.0 1024 91.9510 3740 4471 1 chr5D.!!$R1 731
22 TraesCS3D01G187300 chr2D 19606254 19607446 1192 False 755.0 996 91.3910 3742 4837 2 chr2D.!!$F4 1095
23 TraesCS3D01G187300 chr1B 629719791 629720516 725 False 987.0 987 91.2210 3745 4471 1 chr1B.!!$F2 726
24 TraesCS3D01G187300 chr2A 423780792 423781522 730 False 985.0 985 91.0200 3740 4471 1 chr2A.!!$F1 731
25 TraesCS3D01G187300 chr4A 235652574 235653120 546 False 723.0 723 90.4940 8857 9403 1 chr4A.!!$F1 546
26 TraesCS3D01G187300 chr1D 19798270 19798810 540 True 701.0 701 90.0180 8863 9403 1 chr1D.!!$R1 540
27 TraesCS3D01G187300 chr5B 687755978 687756711 733 False 368.0 368 76.1270 4851 5595 1 chr5B.!!$F3 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 160 1.364901 CAGGCAAAAGCCACCTGTG 59.635 57.895 9.42 0.0 44.91 3.66 F
1161 1187 1.082561 CAAAGACGACGACGACGGA 60.083 57.895 22.36 0.0 44.46 4.69 F
1339 1365 0.931005 GCTTAAGCTGACGAATCCGG 59.069 55.000 20.38 0.0 37.89 5.14 F
1473 1499 1.672030 CAATGACGGCTGGACTGCA 60.672 57.895 0.00 0.0 34.04 4.41 F
1743 1769 1.742268 GATTTCTGGGAGCAACTGAGC 59.258 52.381 0.00 0.0 0.00 4.26 F
3385 3608 0.813610 CAGAATCCGCCGTTGCCATA 60.814 55.000 0.00 0.0 0.00 2.74 F
4377 4625 0.327924 TGGGAGCATCGTTTGTGGAT 59.672 50.000 0.00 0.0 34.37 3.41 F
4997 5355 0.033601 AACAGTGTCCACCAGCCAAA 60.034 50.000 0.00 0.0 0.00 3.28 F
5603 5988 0.035056 GATGGAAGAGGTGGTGGTGG 60.035 60.000 0.00 0.0 0.00 4.61 F
5604 5989 0.772124 ATGGAAGAGGTGGTGGTGGT 60.772 55.000 0.00 0.0 0.00 4.16 F
5605 5990 1.073199 GGAAGAGGTGGTGGTGGTG 59.927 63.158 0.00 0.0 0.00 4.17 F
7888 8876 1.068264 GCACTGGTAAGGCAAAGAAGC 60.068 52.381 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1280 0.326264 ATGAGGAAGGTGACACCAGC 59.674 55.000 26.30 16.47 41.95 4.85 R
3048 3238 9.846248 ATTTGTTCTTTGATAGTAAATGTGCTC 57.154 29.630 0.00 0.00 0.00 4.26 R
3286 3495 1.227853 GTTGGACGGCTTGGTGAGT 60.228 57.895 0.00 0.00 0.00 3.41 R
3385 3608 0.325602 TAAAGTTGGGACGGCGGAAT 59.674 50.000 13.24 0.00 0.00 3.01 R
3531 3769 1.134491 AGGAACCTAAATTCGCCTCCG 60.134 52.381 0.00 0.00 0.00 4.63 R
4649 4996 0.322322 ATCTAAAACCGGTGCCGTCA 59.678 50.000 8.52 0.00 37.81 4.35 R
5217 5577 0.452987 TCCTCGATACGGTTGGAACG 59.547 55.000 0.00 0.00 37.36 3.95 R
6181 6567 3.454447 TCCATAATGACTGAACGGTGGAT 59.546 43.478 0.00 0.00 30.10 3.41 R
6820 7230 5.070981 ACATCCATGTCTGATAACAGTAGGG 59.929 44.000 0.00 2.78 43.81 3.53 R
7888 8876 3.001330 GCCCTCTTCGTCATAAATTGTCG 59.999 47.826 0.00 0.00 38.08 4.35 R
8049 9037 1.291184 TGACAATGAGCGCAGAACGG 61.291 55.000 11.47 0.00 43.93 4.44 R
8730 9741 0.035056 CTTTCCTCTTGACCGGCCAT 60.035 55.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 1.364901 CAGGCAAAAGCCACCTGTG 59.635 57.895 9.42 0.00 44.91 3.66
190 191 1.587043 GGTTGCCGCTTTCTCCTTCC 61.587 60.000 0.00 0.00 0.00 3.46
259 260 2.612567 CGCCTGCGCAGTTTGGTTA 61.613 57.895 33.75 0.00 34.03 2.85
359 361 6.877855 GGGTTTAAGGTTCGTAGAATCTCTTT 59.122 38.462 0.00 0.00 45.90 2.52
492 494 4.080469 ACTCTTCAGTGGATGATGCTTCAT 60.080 41.667 14.48 14.48 45.39 2.57
497 499 1.605710 GTGGATGATGCTTCATTCCCG 59.394 52.381 16.23 0.00 42.73 5.14
536 538 7.228706 TCCTCTGTTTCTTGTCCATTTTTCTAC 59.771 37.037 0.00 0.00 0.00 2.59
538 540 6.264518 TCTGTTTCTTGTCCATTTTTCTACCC 59.735 38.462 0.00 0.00 0.00 3.69
655 657 8.533657 TCTGATTGGTTTCCGTTAGTATCTTTA 58.466 33.333 0.00 0.00 0.00 1.85
1161 1187 1.082561 CAAAGACGACGACGACGGA 60.083 57.895 22.36 0.00 44.46 4.69
1232 1258 1.375908 TCAGGCCAGTTGACGATGC 60.376 57.895 5.01 0.00 0.00 3.91
1323 1349 2.113139 CAGGTGACCAACGGGCTT 59.887 61.111 3.63 0.00 37.90 4.35
1339 1365 0.931005 GCTTAAGCTGACGAATCCGG 59.069 55.000 20.38 0.00 37.89 5.14
1404 1430 3.056304 GAGATATGACCGAAGCAAGAGC 58.944 50.000 0.00 0.00 42.56 4.09
1473 1499 1.672030 CAATGACGGCTGGACTGCA 60.672 57.895 0.00 0.00 34.04 4.41
1743 1769 1.742268 GATTTCTGGGAGCAACTGAGC 59.258 52.381 0.00 0.00 0.00 4.26
2492 2674 9.349713 TCCAATAAACTAACAGTTGAGAATTGT 57.650 29.630 0.00 0.00 38.66 2.71
3048 3238 5.728471 AGTGAGAATGTGAGATGTGGTAAG 58.272 41.667 0.00 0.00 0.00 2.34
3049 3239 5.481824 AGTGAGAATGTGAGATGTGGTAAGA 59.518 40.000 0.00 0.00 0.00 2.10
3221 3430 4.962362 TCACCTTCCTAGCAATCTATGTCA 59.038 41.667 0.00 0.00 0.00 3.58
3378 3601 2.735772 ATGCTCCAGAATCCGCCGT 61.736 57.895 0.00 0.00 0.00 5.68
3385 3608 0.813610 CAGAATCCGCCGTTGCCATA 60.814 55.000 0.00 0.00 0.00 2.74
3417 3655 5.768164 GTCCCAACTTTAGGAAAGATCAACA 59.232 40.000 5.98 0.00 41.02 3.33
3423 3661 7.219484 ACTTTAGGAAAGATCAACACATTGG 57.781 36.000 5.98 0.00 41.02 3.16
3510 3748 2.618045 GGGAGTGGATGTACAAACCCAG 60.618 54.545 16.34 0.00 37.68 4.45
3531 3769 2.162681 CACCTGGGTTCAAATCCTCAC 58.837 52.381 0.00 0.00 0.00 3.51
3552 3790 2.101917 CGGAGGCGAATTTAGGTTCCTA 59.898 50.000 0.00 0.00 0.00 2.94
3553 3791 3.244112 CGGAGGCGAATTTAGGTTCCTAT 60.244 47.826 0.00 0.00 0.00 2.57
3609 3847 4.130118 CGCATTTATTGAGGACTAGGCTT 58.870 43.478 0.00 0.00 0.00 4.35
3619 3857 1.356938 GACTAGGCTTGGTGCGTAAC 58.643 55.000 0.00 0.00 44.05 2.50
3662 3900 5.985911 ACTCATACTTAAAAGGCCGTATGT 58.014 37.500 19.43 13.56 39.87 2.29
4268 4514 3.454371 AGGCATCATCGTGTAACTACC 57.546 47.619 0.00 0.00 31.75 3.18
4377 4625 0.327924 TGGGAGCATCGTTTGTGGAT 59.672 50.000 0.00 0.00 34.37 3.41
4380 4628 2.292267 GGAGCATCGTTTGTGGATCAT 58.708 47.619 0.00 0.00 34.37 2.45
4486 4832 2.045438 CTGTTGGGCGCCATGGTA 60.045 61.111 30.85 9.16 31.53 3.25
4568 4915 0.740149 GTTCAATGATGATGGCGGCA 59.260 50.000 16.34 16.34 34.96 5.69
4649 4996 1.760613 ACGTTATGTGGATGGATCGGT 59.239 47.619 0.00 0.00 0.00 4.69
4716 5063 4.652421 TCGTGTTTTGTAGGTGTGAGTA 57.348 40.909 0.00 0.00 0.00 2.59
4727 5074 0.601558 GTGTGAGTAGTGGCTTCGGA 59.398 55.000 0.00 0.00 0.00 4.55
4997 5355 0.033601 AACAGTGTCCACCAGCCAAA 60.034 50.000 0.00 0.00 0.00 3.28
5088 5446 4.041740 GGTTTTCACCCAGAAGACAAAC 57.958 45.455 0.00 0.00 41.73 2.93
5090 5448 4.081917 GGTTTTCACCCAGAAGACAAACAA 60.082 41.667 0.00 0.00 41.73 2.83
5217 5577 0.767998 GATCTGAATCCCCACCTCCC 59.232 60.000 0.00 0.00 0.00 4.30
5440 5800 3.157252 GGGAGGAGCATCTGCCGA 61.157 66.667 0.00 0.00 43.38 5.54
5474 5834 1.749665 CACCGTGTACAACCCCTCA 59.250 57.895 0.00 0.00 0.00 3.86
5520 5905 2.609920 GAGATCCCCTCCGTCCCT 59.390 66.667 0.00 0.00 35.87 4.20
5583 5968 1.886730 ATGACGAGGGGAGAGGGGAA 61.887 60.000 0.00 0.00 0.00 3.97
5594 5979 2.046292 GAGAGGGGAAGATGGAAGAGG 58.954 57.143 0.00 0.00 0.00 3.69
5595 5980 1.367848 AGAGGGGAAGATGGAAGAGGT 59.632 52.381 0.00 0.00 0.00 3.85
5596 5981 1.488393 GAGGGGAAGATGGAAGAGGTG 59.512 57.143 0.00 0.00 0.00 4.00
5597 5982 0.548510 GGGGAAGATGGAAGAGGTGG 59.451 60.000 0.00 0.00 0.00 4.61
5598 5983 1.290134 GGGAAGATGGAAGAGGTGGT 58.710 55.000 0.00 0.00 0.00 4.16
5599 5984 1.065126 GGGAAGATGGAAGAGGTGGTG 60.065 57.143 0.00 0.00 0.00 4.17
5600 5985 1.065126 GGAAGATGGAAGAGGTGGTGG 60.065 57.143 0.00 0.00 0.00 4.61
5601 5986 1.630878 GAAGATGGAAGAGGTGGTGGT 59.369 52.381 0.00 0.00 0.00 4.16
5602 5987 0.987294 AGATGGAAGAGGTGGTGGTG 59.013 55.000 0.00 0.00 0.00 4.17
5603 5988 0.035056 GATGGAAGAGGTGGTGGTGG 60.035 60.000 0.00 0.00 0.00 4.61
5604 5989 0.772124 ATGGAAGAGGTGGTGGTGGT 60.772 55.000 0.00 0.00 0.00 4.16
5605 5990 1.073199 GGAAGAGGTGGTGGTGGTG 59.927 63.158 0.00 0.00 0.00 4.17
5613 5998 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
5630 6015 4.408821 TGGCGCTGGCTAGGGTTG 62.409 66.667 15.53 0.00 38.97 3.77
5773 6158 3.523606 TTTGCAAGTCACACATTTGCT 57.476 38.095 0.00 0.00 45.53 3.91
5934 6319 8.153550 CCACTTTTCTTGCCTATAGATATCTGT 58.846 37.037 15.79 11.37 0.00 3.41
5935 6320 9.553064 CACTTTTCTTGCCTATAGATATCTGTT 57.447 33.333 15.79 5.45 0.00 3.16
7888 8876 1.068264 GCACTGGTAAGGCAAAGAAGC 60.068 52.381 0.00 0.00 0.00 3.86
8218 9212 0.882474 CGTCGGTCTGTCTTCCTTCT 59.118 55.000 0.00 0.00 0.00 2.85
8219 9213 1.401670 CGTCGGTCTGTCTTCCTTCTG 60.402 57.143 0.00 0.00 0.00 3.02
8544 9554 5.529791 TGTGCTCAGTCTTGTTTACTCTAC 58.470 41.667 0.00 0.00 0.00 2.59
8609 9620 3.881089 AGGTTACGTTTCCTTTCCTTGTG 59.119 43.478 0.00 0.00 0.00 3.33
8635 9646 6.428159 CCCAAGTCTTGTGTAAGATATATGCC 59.572 42.308 11.61 0.00 44.27 4.40
8644 9655 4.288626 TGTAAGATATATGCCCCTTGGACC 59.711 45.833 0.00 0.00 0.00 4.46
8647 9658 3.990245 AGATATATGCCCCTTGGACCTTT 59.010 43.478 0.00 0.00 0.00 3.11
8648 9659 2.459555 ATATGCCCCTTGGACCTTTG 57.540 50.000 0.00 0.00 0.00 2.77
8649 9660 1.080638 TATGCCCCTTGGACCTTTGT 58.919 50.000 0.00 0.00 0.00 2.83
8650 9661 0.190815 ATGCCCCTTGGACCTTTGTT 59.809 50.000 0.00 0.00 0.00 2.83
8651 9662 0.854218 TGCCCCTTGGACCTTTGTTA 59.146 50.000 0.00 0.00 0.00 2.41
8652 9663 1.431243 TGCCCCTTGGACCTTTGTTAT 59.569 47.619 0.00 0.00 0.00 1.89
8653 9664 1.824852 GCCCCTTGGACCTTTGTTATG 59.175 52.381 0.00 0.00 0.00 1.90
8654 9665 2.821625 GCCCCTTGGACCTTTGTTATGT 60.822 50.000 0.00 0.00 0.00 2.29
8655 9666 2.825532 CCCCTTGGACCTTTGTTATGTG 59.174 50.000 0.00 0.00 0.00 3.21
8656 9667 2.825532 CCCTTGGACCTTTGTTATGTGG 59.174 50.000 0.00 0.00 0.00 4.17
8657 9668 2.231235 CCTTGGACCTTTGTTATGTGGC 59.769 50.000 0.00 0.00 0.00 5.01
8658 9669 2.969821 TGGACCTTTGTTATGTGGCT 57.030 45.000 0.00 0.00 0.00 4.75
8659 9670 2.513753 TGGACCTTTGTTATGTGGCTG 58.486 47.619 0.00 0.00 0.00 4.85
8660 9671 1.202348 GGACCTTTGTTATGTGGCTGC 59.798 52.381 0.00 0.00 0.00 5.25
8661 9672 2.162681 GACCTTTGTTATGTGGCTGCT 58.837 47.619 0.00 0.00 0.00 4.24
8662 9673 3.343617 GACCTTTGTTATGTGGCTGCTA 58.656 45.455 0.00 0.00 0.00 3.49
8663 9674 3.347216 ACCTTTGTTATGTGGCTGCTAG 58.653 45.455 0.00 0.00 0.00 3.42
8664 9675 3.009033 ACCTTTGTTATGTGGCTGCTAGA 59.991 43.478 0.00 0.00 0.00 2.43
8665 9676 4.009675 CCTTTGTTATGTGGCTGCTAGAA 58.990 43.478 0.00 0.00 0.00 2.10
8666 9677 4.095483 CCTTTGTTATGTGGCTGCTAGAAG 59.905 45.833 0.00 0.00 0.00 2.85
8667 9678 3.266510 TGTTATGTGGCTGCTAGAAGG 57.733 47.619 0.00 0.00 0.00 3.46
8668 9679 2.837591 TGTTATGTGGCTGCTAGAAGGA 59.162 45.455 0.00 0.00 0.00 3.36
8669 9680 3.198872 GTTATGTGGCTGCTAGAAGGAC 58.801 50.000 0.00 0.00 0.00 3.85
8670 9681 0.543749 ATGTGGCTGCTAGAAGGACC 59.456 55.000 0.00 0.00 0.00 4.46
8671 9682 0.545309 TGTGGCTGCTAGAAGGACCT 60.545 55.000 0.00 0.00 0.00 3.85
8672 9683 0.615850 GTGGCTGCTAGAAGGACCTT 59.384 55.000 6.40 6.40 0.00 3.50
8673 9684 1.003696 GTGGCTGCTAGAAGGACCTTT 59.996 52.381 8.49 1.35 0.00 3.11
8674 9685 1.003580 TGGCTGCTAGAAGGACCTTTG 59.996 52.381 8.49 3.52 0.00 2.77
8675 9686 1.003696 GGCTGCTAGAAGGACCTTTGT 59.996 52.381 8.49 1.65 0.00 2.83
8676 9687 2.553247 GGCTGCTAGAAGGACCTTTGTT 60.553 50.000 8.49 0.27 0.00 2.83
8677 9688 3.307480 GGCTGCTAGAAGGACCTTTGTTA 60.307 47.826 8.49 1.47 0.00 2.41
8678 9689 4.518249 GCTGCTAGAAGGACCTTTGTTAT 58.482 43.478 8.49 0.00 0.00 1.89
8679 9690 4.333926 GCTGCTAGAAGGACCTTTGTTATG 59.666 45.833 8.49 0.00 0.00 1.90
8680 9691 5.491982 CTGCTAGAAGGACCTTTGTTATGT 58.508 41.667 8.49 0.00 0.00 2.29
8681 9692 5.245531 TGCTAGAAGGACCTTTGTTATGTG 58.754 41.667 8.49 0.00 0.00 3.21
8682 9693 4.636206 GCTAGAAGGACCTTTGTTATGTGG 59.364 45.833 8.49 0.00 0.00 4.17
8683 9694 3.421844 AGAAGGACCTTTGTTATGTGGC 58.578 45.455 8.49 0.00 0.00 5.01
8684 9695 3.074538 AGAAGGACCTTTGTTATGTGGCT 59.925 43.478 8.49 0.00 0.00 4.75
8685 9696 2.795329 AGGACCTTTGTTATGTGGCTG 58.205 47.619 0.00 0.00 0.00 4.85
8686 9697 1.202348 GGACCTTTGTTATGTGGCTGC 59.798 52.381 0.00 0.00 0.00 5.25
8687 9698 2.162681 GACCTTTGTTATGTGGCTGCT 58.837 47.619 0.00 0.00 0.00 4.24
8688 9699 3.343617 GACCTTTGTTATGTGGCTGCTA 58.656 45.455 0.00 0.00 0.00 3.49
8689 9700 3.347216 ACCTTTGTTATGTGGCTGCTAG 58.653 45.455 0.00 0.00 0.00 3.42
8690 9701 3.009033 ACCTTTGTTATGTGGCTGCTAGA 59.991 43.478 0.00 0.00 0.00 2.43
8691 9702 4.009675 CCTTTGTTATGTGGCTGCTAGAA 58.990 43.478 0.00 0.00 0.00 2.10
8692 9703 4.095483 CCTTTGTTATGTGGCTGCTAGAAG 59.905 45.833 0.00 0.00 0.00 2.85
8693 9704 3.266510 TGTTATGTGGCTGCTAGAAGG 57.733 47.619 0.00 0.00 0.00 3.46
8694 9705 2.837591 TGTTATGTGGCTGCTAGAAGGA 59.162 45.455 0.00 0.00 0.00 3.36
8695 9706 3.118629 TGTTATGTGGCTGCTAGAAGGAG 60.119 47.826 0.00 0.00 36.68 3.69
8696 9707 0.835941 ATGTGGCTGCTAGAAGGAGG 59.164 55.000 0.00 0.00 33.92 4.30
8697 9708 1.267574 TGTGGCTGCTAGAAGGAGGG 61.268 60.000 0.00 0.00 33.92 4.30
8698 9709 2.370445 TGGCTGCTAGAAGGAGGGC 61.370 63.158 0.00 0.00 33.92 5.19
8699 9710 2.370445 GGCTGCTAGAAGGAGGGCA 61.370 63.158 0.00 0.00 33.92 5.36
8700 9711 1.153269 GCTGCTAGAAGGAGGGCAC 60.153 63.158 0.00 0.00 33.92 5.01
8701 9712 1.142748 CTGCTAGAAGGAGGGCACG 59.857 63.158 0.00 0.00 29.18 5.34
8702 9713 1.304962 TGCTAGAAGGAGGGCACGA 60.305 57.895 0.00 0.00 0.00 4.35
8703 9714 1.323271 TGCTAGAAGGAGGGCACGAG 61.323 60.000 0.00 0.00 0.00 4.18
8704 9715 1.038130 GCTAGAAGGAGGGCACGAGA 61.038 60.000 0.00 0.00 0.00 4.04
8705 9716 1.028905 CTAGAAGGAGGGCACGAGAG 58.971 60.000 0.00 0.00 0.00 3.20
8706 9717 0.395862 TAGAAGGAGGGCACGAGAGG 60.396 60.000 0.00 0.00 0.00 3.69
8707 9718 2.685380 AAGGAGGGCACGAGAGGG 60.685 66.667 0.00 0.00 37.78 4.30
8743 9754 4.424711 GCCCATGGCCGGTCAAGA 62.425 66.667 15.45 0.00 44.06 3.02
8744 9755 2.124570 CCCATGGCCGGTCAAGAG 60.125 66.667 15.45 6.13 0.00 2.85
8745 9756 2.124570 CCATGGCCGGTCAAGAGG 60.125 66.667 15.45 12.45 0.00 3.69
8746 9757 2.669133 CCATGGCCGGTCAAGAGGA 61.669 63.158 15.45 0.00 0.00 3.71
8747 9758 1.299648 CATGGCCGGTCAAGAGGAA 59.700 57.895 15.45 0.00 0.00 3.36
8748 9759 0.322456 CATGGCCGGTCAAGAGGAAA 60.322 55.000 15.45 0.00 0.00 3.13
8749 9760 0.035056 ATGGCCGGTCAAGAGGAAAG 60.035 55.000 15.45 0.00 0.00 2.62
8750 9761 1.377333 GGCCGGTCAAGAGGAAAGG 60.377 63.158 0.00 0.00 0.00 3.11
8751 9762 1.377333 GCCGGTCAAGAGGAAAGGG 60.377 63.158 1.90 0.00 0.00 3.95
8752 9763 1.838073 GCCGGTCAAGAGGAAAGGGA 61.838 60.000 1.90 0.00 0.00 4.20
8753 9764 0.912486 CCGGTCAAGAGGAAAGGGAT 59.088 55.000 0.00 0.00 0.00 3.85
8754 9765 1.282157 CCGGTCAAGAGGAAAGGGATT 59.718 52.381 0.00 0.00 0.00 3.01
8755 9766 2.290960 CCGGTCAAGAGGAAAGGGATTT 60.291 50.000 0.00 0.00 0.00 2.17
8756 9767 3.010420 CGGTCAAGAGGAAAGGGATTTC 58.990 50.000 0.00 0.00 0.00 2.17
8771 9782 6.782082 AGGGATTTCCTTCTTAATTCTTGC 57.218 37.500 0.00 0.00 45.47 4.01
8772 9783 6.497640 AGGGATTTCCTTCTTAATTCTTGCT 58.502 36.000 0.00 0.00 45.47 3.91
8773 9784 6.956435 AGGGATTTCCTTCTTAATTCTTGCTT 59.044 34.615 0.00 0.00 45.47 3.91
8774 9785 7.038048 GGGATTTCCTTCTTAATTCTTGCTTG 58.962 38.462 0.00 0.00 35.95 4.01
8775 9786 7.093771 GGGATTTCCTTCTTAATTCTTGCTTGA 60.094 37.037 0.00 0.00 35.95 3.02
8776 9787 8.473219 GGATTTCCTTCTTAATTCTTGCTTGAT 58.527 33.333 0.00 0.00 0.00 2.57
8777 9788 9.866798 GATTTCCTTCTTAATTCTTGCTTGATT 57.133 29.630 0.00 0.00 0.00 2.57
8780 9791 9.739276 TTCCTTCTTAATTCTTGCTTGATTAGA 57.261 29.630 0.00 0.00 0.00 2.10
8781 9792 9.911788 TCCTTCTTAATTCTTGCTTGATTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
8788 9799 7.692460 ATTCTTGCTTGATTAGATTGACACA 57.308 32.000 0.00 0.00 0.00 3.72
8789 9800 7.692460 TTCTTGCTTGATTAGATTGACACAT 57.308 32.000 0.00 0.00 0.00 3.21
8790 9801 7.312657 TCTTGCTTGATTAGATTGACACATC 57.687 36.000 0.00 0.00 0.00 3.06
8791 9802 7.108194 TCTTGCTTGATTAGATTGACACATCT 58.892 34.615 5.74 5.74 0.00 2.90
8792 9803 6.915544 TGCTTGATTAGATTGACACATCTC 57.084 37.500 4.15 0.00 0.00 2.75
8793 9804 5.819379 TGCTTGATTAGATTGACACATCTCC 59.181 40.000 4.15 0.00 0.00 3.71
8794 9805 6.054295 GCTTGATTAGATTGACACATCTCCT 58.946 40.000 4.15 0.00 0.00 3.69
8795 9806 6.541641 GCTTGATTAGATTGACACATCTCCTT 59.458 38.462 4.15 0.00 0.00 3.36
8796 9807 7.254727 GCTTGATTAGATTGACACATCTCCTTC 60.255 40.741 4.15 2.70 0.00 3.46
8797 9808 6.586344 TGATTAGATTGACACATCTCCTTCC 58.414 40.000 4.15 0.00 0.00 3.46
8798 9809 3.922171 AGATTGACACATCTCCTTCCC 57.078 47.619 0.00 0.00 0.00 3.97
8799 9810 3.458831 AGATTGACACATCTCCTTCCCT 58.541 45.455 0.00 0.00 0.00 4.20
8800 9811 3.848975 AGATTGACACATCTCCTTCCCTT 59.151 43.478 0.00 0.00 0.00 3.95
8801 9812 5.032846 AGATTGACACATCTCCTTCCCTTA 58.967 41.667 0.00 0.00 0.00 2.69
8802 9813 5.669447 AGATTGACACATCTCCTTCCCTTAT 59.331 40.000 0.00 0.00 0.00 1.73
8803 9814 6.846505 AGATTGACACATCTCCTTCCCTTATA 59.153 38.462 0.00 0.00 0.00 0.98
8804 9815 7.515514 AGATTGACACATCTCCTTCCCTTATAT 59.484 37.037 0.00 0.00 0.00 0.86
8805 9816 8.742125 ATTGACACATCTCCTTCCCTTATATA 57.258 34.615 0.00 0.00 0.00 0.86
8806 9817 7.782897 TGACACATCTCCTTCCCTTATATAG 57.217 40.000 0.00 0.00 0.00 1.31
8807 9818 7.535738 TGACACATCTCCTTCCCTTATATAGA 58.464 38.462 0.00 0.00 0.00 1.98
8808 9819 7.671819 TGACACATCTCCTTCCCTTATATAGAG 59.328 40.741 0.00 0.00 0.00 2.43
8809 9820 7.770662 ACACATCTCCTTCCCTTATATAGAGA 58.229 38.462 0.00 0.00 33.75 3.10
8810 9821 7.893302 ACACATCTCCTTCCCTTATATAGAGAG 59.107 40.741 0.00 0.00 32.82 3.20
8811 9822 7.341769 CACATCTCCTTCCCTTATATAGAGAGG 59.658 44.444 0.00 0.00 36.89 3.69
8812 9823 7.020168 ACATCTCCTTCCCTTATATAGAGAGGT 59.980 40.741 7.15 7.15 38.61 3.85
8813 9824 7.423443 TCTCCTTCCCTTATATAGAGAGGTT 57.577 40.000 0.00 0.00 0.00 3.50
8814 9825 7.838241 TCTCCTTCCCTTATATAGAGAGGTTT 58.162 38.462 0.00 0.00 0.00 3.27
8815 9826 8.967577 TCTCCTTCCCTTATATAGAGAGGTTTA 58.032 37.037 0.00 0.00 0.00 2.01
8816 9827 8.953223 TCCTTCCCTTATATAGAGAGGTTTAC 57.047 38.462 0.00 0.00 0.00 2.01
8817 9828 8.744365 TCCTTCCCTTATATAGAGAGGTTTACT 58.256 37.037 0.00 0.00 0.00 2.24
8818 9829 9.382307 CCTTCCCTTATATAGAGAGGTTTACTT 57.618 37.037 0.00 0.00 0.00 2.24
8820 9831 9.947189 TTCCCTTATATAGAGAGGTTTACTTGA 57.053 33.333 0.00 0.00 0.00 3.02
8821 9832 9.364653 TCCCTTATATAGAGAGGTTTACTTGAC 57.635 37.037 0.00 0.00 0.00 3.18
8822 9833 9.369672 CCCTTATATAGAGAGGTTTACTTGACT 57.630 37.037 0.00 0.00 0.00 3.41
8829 9840 6.693466 AGAGAGGTTTACTTGACTTCTAAGC 58.307 40.000 0.00 0.00 34.12 3.09
8830 9841 6.267928 AGAGAGGTTTACTTGACTTCTAAGCA 59.732 38.462 0.00 0.00 34.12 3.91
8831 9842 6.827727 AGAGGTTTACTTGACTTCTAAGCAA 58.172 36.000 0.00 0.00 32.46 3.91
8832 9843 6.931840 AGAGGTTTACTTGACTTCTAAGCAAG 59.068 38.462 17.62 17.62 41.55 4.01
8833 9844 6.827727 AGGTTTACTTGACTTCTAAGCAAGA 58.172 36.000 22.34 11.02 39.91 3.02
8834 9845 6.706716 AGGTTTACTTGACTTCTAAGCAAGAC 59.293 38.462 22.34 14.73 39.91 3.01
8835 9846 6.706716 GGTTTACTTGACTTCTAAGCAAGACT 59.293 38.462 22.34 11.25 39.91 3.24
8836 9847 7.226918 GGTTTACTTGACTTCTAAGCAAGACTT 59.773 37.037 22.34 10.80 39.91 3.01
8837 9848 9.257651 GTTTACTTGACTTCTAAGCAAGACTTA 57.742 33.333 22.34 10.17 39.91 2.24
8838 9849 8.813643 TTACTTGACTTCTAAGCAAGACTTAC 57.186 34.615 22.34 0.00 39.91 2.34
8839 9850 7.056844 ACTTGACTTCTAAGCAAGACTTACT 57.943 36.000 22.34 0.00 39.91 2.24
8840 9851 7.501844 ACTTGACTTCTAAGCAAGACTTACTT 58.498 34.615 22.34 5.97 39.91 2.24
8853 9864 6.420913 AAGACTTACTTGACCTCTAAGCAA 57.579 37.500 0.00 0.00 37.45 3.91
8854 9865 6.031751 AGACTTACTTGACCTCTAAGCAAG 57.968 41.667 0.00 0.00 43.41 4.01
8859 9870 0.246635 TGACCTCTAAGCAAGCGACC 59.753 55.000 0.00 0.00 0.00 4.79
8861 9872 0.905337 ACCTCTAAGCAAGCGACCCT 60.905 55.000 0.00 0.00 0.00 4.34
8873 9884 2.509336 GACCCTGCGGACGACATG 60.509 66.667 0.00 0.00 0.00 3.21
8879 9890 2.264794 GCGGACGACATGGAGGTT 59.735 61.111 0.00 0.00 0.00 3.50
8880 9891 1.375523 GCGGACGACATGGAGGTTT 60.376 57.895 0.00 0.00 0.00 3.27
8976 9987 2.815211 CCGCACGTAGCAGCATGT 60.815 61.111 9.95 0.00 46.13 3.21
9072 10083 2.609299 TGGATGGGGACGCCTTGA 60.609 61.111 10.28 0.00 0.00 3.02
9078 10089 2.584391 GGGGACGCCTTGAGACAGT 61.584 63.158 0.24 0.00 0.00 3.55
9088 10099 2.031163 GAGACAGTGGCGGTGCTT 59.969 61.111 0.00 0.00 0.00 3.91
9097 10108 1.077716 GGCGGTGCTTATGGGAACT 60.078 57.895 0.00 0.00 0.00 3.01
9113 10124 0.608582 AACTAGGTCGTCGCAGTCCT 60.609 55.000 0.00 0.00 0.00 3.85
9191 10206 4.760047 CGGCAGCGTGGGTAGCTT 62.760 66.667 0.00 0.00 44.06 3.74
9291 10308 3.431725 GCCACAGCCTGCCGTAAC 61.432 66.667 0.00 0.00 0.00 2.50
9293 10310 1.594833 CCACAGCCTGCCGTAACTA 59.405 57.895 0.00 0.00 0.00 2.24
9296 10313 0.682852 ACAGCCTGCCGTAACTACAA 59.317 50.000 0.00 0.00 0.00 2.41
9307 10324 3.441163 CGTAACTACAAGATTGCGGCTA 58.559 45.455 0.00 0.00 31.34 3.93
9322 10339 1.375268 GCTATCATCTGCTCCGGGC 60.375 63.158 0.00 4.52 42.22 6.13
9338 10355 4.154347 GCTGAGGACGAGGGCAGG 62.154 72.222 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 191 2.232941 TCTGGAACCTAAACGCACTAGG 59.767 50.000 0.00 4.03 41.61 3.02
259 260 2.807108 GCAAGAAAAGAGAGTCCACCGT 60.807 50.000 0.00 0.00 0.00 4.83
365 367 6.634436 CACTCATTCTTTTGAAAACTCGGAAG 59.366 38.462 0.00 0.00 42.31 3.46
492 494 1.835531 GGAACATTCCTAGGACGGGAA 59.164 52.381 12.22 0.00 45.40 3.97
538 540 2.045926 CTCCGTGCCAGAAAGGGG 60.046 66.667 0.00 0.00 38.09 4.79
558 560 4.718774 TGCTCAGATCTAGAAACCATCCTT 59.281 41.667 0.00 0.00 0.00 3.36
559 561 4.293494 TGCTCAGATCTAGAAACCATCCT 58.707 43.478 0.00 0.00 0.00 3.24
594 596 2.109425 ACTGGGATTAACACCGAAGC 57.891 50.000 0.00 0.00 0.00 3.86
655 657 5.467738 AGGAGGAAGGAATTTGGAACTTTT 58.532 37.500 0.00 0.00 0.00 2.27
1161 1187 5.304686 TGTCAAGGGTAATCTCAACAACT 57.695 39.130 0.00 0.00 0.00 3.16
1232 1258 3.420606 CGCTGTGTGCTGAGCCAG 61.421 66.667 0.23 3.16 40.11 4.85
1254 1280 0.326264 ATGAGGAAGGTGACACCAGC 59.674 55.000 26.30 16.47 41.95 4.85
1323 1349 1.143183 GCCCGGATTCGTCAGCTTA 59.857 57.895 0.73 0.00 33.95 3.09
1473 1499 3.139077 GTGATTGAACCGTTTCTCCACT 58.861 45.455 0.00 0.00 32.36 4.00
1743 1769 1.076332 GGTTGTCGAAACCCTGATCG 58.924 55.000 14.81 0.00 40.31 3.69
3048 3238 9.846248 ATTTGTTCTTTGATAGTAAATGTGCTC 57.154 29.630 0.00 0.00 0.00 4.26
3221 3430 5.248477 ACATCATCAAACTAGTAGGTGTGGT 59.752 40.000 0.00 0.00 0.00 4.16
3286 3495 1.227853 GTTGGACGGCTTGGTGAGT 60.228 57.895 0.00 0.00 0.00 3.41
3378 3601 1.525077 GGACGGCGGAATATGGCAA 60.525 57.895 13.24 0.00 0.00 4.52
3385 3608 0.325602 TAAAGTTGGGACGGCGGAAT 59.674 50.000 13.24 0.00 0.00 3.01
3510 3748 1.177401 GAGGATTTGAACCCAGGTGC 58.823 55.000 0.00 0.00 0.00 5.01
3531 3769 1.134491 AGGAACCTAAATTCGCCTCCG 60.134 52.381 0.00 0.00 0.00 4.63
3552 3790 4.870021 AGCCTGGTCCTCAAGAATAAAT 57.130 40.909 0.00 0.00 0.00 1.40
3553 3791 4.657814 AAGCCTGGTCCTCAAGAATAAA 57.342 40.909 0.00 0.00 0.00 1.40
3619 3857 8.943909 ATGAGTACTAGGATTTTTAAACTCGG 57.056 34.615 0.00 0.00 35.90 4.63
3662 3900 2.398588 CCTCTGCACCAACTAGGGATA 58.601 52.381 0.00 0.00 43.89 2.59
4377 4625 1.759445 GCCTCTGTCTTCCAGCTATGA 59.241 52.381 0.00 0.00 41.25 2.15
4380 4628 1.189752 CTGCCTCTGTCTTCCAGCTA 58.810 55.000 0.00 0.00 41.25 3.32
4486 4832 2.119029 TCGTCCATCCGTCGATGCT 61.119 57.895 0.00 0.00 44.00 3.79
4568 4915 3.058293 CACCACATGCACACGTTTTAGAT 60.058 43.478 0.00 0.00 0.00 1.98
4649 4996 0.322322 ATCTAAAACCGGTGCCGTCA 59.678 50.000 8.52 0.00 37.81 4.35
4716 5063 1.377725 CAAGCCATCCGAAGCCACT 60.378 57.895 0.00 0.00 0.00 4.00
4727 5074 7.066284 GTCTAACAAGAACATACATCAAGCCAT 59.934 37.037 0.00 0.00 0.00 4.40
4835 5182 0.392998 CAAGGTGGTGGCGCTATCTT 60.393 55.000 7.64 3.88 0.00 2.40
4997 5355 1.072159 GCGCTGCCTTGGGAGATAT 59.928 57.895 12.42 0.00 0.00 1.63
5088 5446 1.278985 TGCTCTACCTCCACCATGTTG 59.721 52.381 0.00 0.00 0.00 3.33
5090 5448 1.198713 CTGCTCTACCTCCACCATGT 58.801 55.000 0.00 0.00 0.00 3.21
5217 5577 0.452987 TCCTCGATACGGTTGGAACG 59.547 55.000 0.00 0.00 37.36 3.95
5440 5800 3.449227 TGGCGCGAGATCTTCCGT 61.449 61.111 12.10 0.00 0.00 4.69
5474 5834 2.670934 CTGTCGCTTGGCTGCCTT 60.671 61.111 21.03 0.00 0.00 4.35
5583 5968 0.987294 CACCACCACCTCTTCCATCT 59.013 55.000 0.00 0.00 0.00 2.90
5594 5979 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
5595 5980 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
5596 5981 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
5597 5982 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
5598 5983 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
5613 5998 4.408821 CAACCCTAGCCAGCGCCA 62.409 66.667 2.29 0.00 34.57 5.69
5773 6158 5.633830 ACTCTTTCGAGGTCGTATGTAAA 57.366 39.130 0.00 0.00 41.71 2.01
6177 6563 6.073058 CCATAATGACTGAACGGTGGATAATG 60.073 42.308 0.00 0.00 0.00 1.90
6181 6567 3.454447 TCCATAATGACTGAACGGTGGAT 59.546 43.478 0.00 0.00 30.10 3.41
6820 7230 5.070981 ACATCCATGTCTGATAACAGTAGGG 59.929 44.000 0.00 2.78 43.81 3.53
7888 8876 3.001330 GCCCTCTTCGTCATAAATTGTCG 59.999 47.826 0.00 0.00 38.08 4.35
8049 9037 1.291184 TGACAATGAGCGCAGAACGG 61.291 55.000 11.47 0.00 43.93 4.44
8055 9043 1.371337 GGAGCATGACAATGAGCGCA 61.371 55.000 11.47 0.00 35.67 6.09
8218 9212 4.017126 AGTACCAGATCGATGTGAGAACA 58.983 43.478 23.11 1.41 0.00 3.18
8219 9213 4.640789 AGTACCAGATCGATGTGAGAAC 57.359 45.455 23.11 16.27 0.00 3.01
8593 9604 0.313987 GGGCACAAGGAAAGGAAACG 59.686 55.000 0.00 0.00 0.00 3.60
8609 9620 6.073003 GCATATATCTTACACAAGACTTGGGC 60.073 42.308 17.55 0.00 43.50 5.36
8635 9646 2.825532 CCACATAACAAAGGTCCAAGGG 59.174 50.000 0.00 0.00 0.00 3.95
8644 9655 4.095483 CCTTCTAGCAGCCACATAACAAAG 59.905 45.833 0.00 0.00 0.00 2.77
8647 9658 2.837591 TCCTTCTAGCAGCCACATAACA 59.162 45.455 0.00 0.00 0.00 2.41
8648 9659 3.198872 GTCCTTCTAGCAGCCACATAAC 58.801 50.000 0.00 0.00 0.00 1.89
8649 9660 2.170607 GGTCCTTCTAGCAGCCACATAA 59.829 50.000 0.00 0.00 0.00 1.90
8650 9661 1.762957 GGTCCTTCTAGCAGCCACATA 59.237 52.381 0.00 0.00 0.00 2.29
8651 9662 0.543749 GGTCCTTCTAGCAGCCACAT 59.456 55.000 0.00 0.00 0.00 3.21
8652 9663 0.545309 AGGTCCTTCTAGCAGCCACA 60.545 55.000 0.00 0.00 0.00 4.17
8653 9664 0.615850 AAGGTCCTTCTAGCAGCCAC 59.384 55.000 0.00 0.00 0.00 5.01
8654 9665 1.003580 CAAAGGTCCTTCTAGCAGCCA 59.996 52.381 4.10 0.00 0.00 4.75
8655 9666 1.003696 ACAAAGGTCCTTCTAGCAGCC 59.996 52.381 4.10 0.00 0.00 4.85
8656 9667 2.481289 ACAAAGGTCCTTCTAGCAGC 57.519 50.000 4.10 0.00 0.00 5.25
8657 9668 5.352569 CACATAACAAAGGTCCTTCTAGCAG 59.647 44.000 4.10 0.00 0.00 4.24
8658 9669 5.245531 CACATAACAAAGGTCCTTCTAGCA 58.754 41.667 4.10 0.00 0.00 3.49
8659 9670 4.636206 CCACATAACAAAGGTCCTTCTAGC 59.364 45.833 4.10 0.00 0.00 3.42
8660 9671 4.636206 GCCACATAACAAAGGTCCTTCTAG 59.364 45.833 4.10 0.92 0.00 2.43
8661 9672 4.288626 AGCCACATAACAAAGGTCCTTCTA 59.711 41.667 4.10 0.00 0.00 2.10
8662 9673 3.074538 AGCCACATAACAAAGGTCCTTCT 59.925 43.478 4.10 0.00 0.00 2.85
8663 9674 3.191371 CAGCCACATAACAAAGGTCCTTC 59.809 47.826 4.10 0.00 0.00 3.46
8664 9675 3.157087 CAGCCACATAACAAAGGTCCTT 58.843 45.455 0.00 0.00 0.00 3.36
8665 9676 2.795329 CAGCCACATAACAAAGGTCCT 58.205 47.619 0.00 0.00 0.00 3.85
8666 9677 1.202348 GCAGCCACATAACAAAGGTCC 59.798 52.381 0.00 0.00 0.00 4.46
8667 9678 2.162681 AGCAGCCACATAACAAAGGTC 58.837 47.619 0.00 0.00 0.00 3.85
8668 9679 2.292828 AGCAGCCACATAACAAAGGT 57.707 45.000 0.00 0.00 0.00 3.50
8669 9680 3.609853 TCTAGCAGCCACATAACAAAGG 58.390 45.455 0.00 0.00 0.00 3.11
8670 9681 4.095483 CCTTCTAGCAGCCACATAACAAAG 59.905 45.833 0.00 0.00 0.00 2.77
8671 9682 4.009675 CCTTCTAGCAGCCACATAACAAA 58.990 43.478 0.00 0.00 0.00 2.83
8672 9683 3.263170 TCCTTCTAGCAGCCACATAACAA 59.737 43.478 0.00 0.00 0.00 2.83
8673 9684 2.837591 TCCTTCTAGCAGCCACATAACA 59.162 45.455 0.00 0.00 0.00 2.41
8674 9685 3.462021 CTCCTTCTAGCAGCCACATAAC 58.538 50.000 0.00 0.00 0.00 1.89
8675 9686 2.435805 CCTCCTTCTAGCAGCCACATAA 59.564 50.000 0.00 0.00 0.00 1.90
8676 9687 2.042464 CCTCCTTCTAGCAGCCACATA 58.958 52.381 0.00 0.00 0.00 2.29
8677 9688 0.835941 CCTCCTTCTAGCAGCCACAT 59.164 55.000 0.00 0.00 0.00 3.21
8678 9689 1.267574 CCCTCCTTCTAGCAGCCACA 61.268 60.000 0.00 0.00 0.00 4.17
8679 9690 1.524482 CCCTCCTTCTAGCAGCCAC 59.476 63.158 0.00 0.00 0.00 5.01
8680 9691 2.370445 GCCCTCCTTCTAGCAGCCA 61.370 63.158 0.00 0.00 0.00 4.75
8681 9692 2.370445 TGCCCTCCTTCTAGCAGCC 61.370 63.158 0.00 0.00 0.00 4.85
8682 9693 1.153269 GTGCCCTCCTTCTAGCAGC 60.153 63.158 0.00 0.00 35.56 5.25
8683 9694 1.142748 CGTGCCCTCCTTCTAGCAG 59.857 63.158 0.00 0.00 35.56 4.24
8684 9695 1.304962 TCGTGCCCTCCTTCTAGCA 60.305 57.895 0.00 0.00 0.00 3.49
8685 9696 1.038130 TCTCGTGCCCTCCTTCTAGC 61.038 60.000 0.00 0.00 0.00 3.42
8686 9697 1.028905 CTCTCGTGCCCTCCTTCTAG 58.971 60.000 0.00 0.00 0.00 2.43
8687 9698 0.395862 CCTCTCGTGCCCTCCTTCTA 60.396 60.000 0.00 0.00 0.00 2.10
8688 9699 1.684049 CCTCTCGTGCCCTCCTTCT 60.684 63.158 0.00 0.00 0.00 2.85
8689 9700 2.726351 CCCTCTCGTGCCCTCCTTC 61.726 68.421 0.00 0.00 0.00 3.46
8690 9701 2.685380 CCCTCTCGTGCCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
8727 9738 2.124570 CTCTTGACCGGCCATGGG 60.125 66.667 15.13 0.00 0.00 4.00
8728 9739 2.124570 CCTCTTGACCGGCCATGG 60.125 66.667 7.63 7.63 0.00 3.66
8729 9740 0.322456 TTTCCTCTTGACCGGCCATG 60.322 55.000 0.00 0.00 0.00 3.66
8730 9741 0.035056 CTTTCCTCTTGACCGGCCAT 60.035 55.000 0.00 0.00 0.00 4.40
8731 9742 1.374947 CTTTCCTCTTGACCGGCCA 59.625 57.895 0.00 0.00 0.00 5.36
8732 9743 1.377333 CCTTTCCTCTTGACCGGCC 60.377 63.158 0.00 0.00 0.00 6.13
8733 9744 1.377333 CCCTTTCCTCTTGACCGGC 60.377 63.158 0.00 0.00 0.00 6.13
8734 9745 0.912486 ATCCCTTTCCTCTTGACCGG 59.088 55.000 0.00 0.00 0.00 5.28
8735 9746 2.789409 AATCCCTTTCCTCTTGACCG 57.211 50.000 0.00 0.00 0.00 4.79
8749 9760 6.782082 AGCAAGAATTAAGAAGGAAATCCC 57.218 37.500 0.00 0.00 36.42 3.85
8750 9761 7.830739 TCAAGCAAGAATTAAGAAGGAAATCC 58.169 34.615 0.00 0.00 0.00 3.01
8751 9762 9.866798 AATCAAGCAAGAATTAAGAAGGAAATC 57.133 29.630 0.00 0.00 0.00 2.17
8754 9765 9.739276 TCTAATCAAGCAAGAATTAAGAAGGAA 57.261 29.630 0.00 0.00 0.00 3.36
8755 9766 9.911788 ATCTAATCAAGCAAGAATTAAGAAGGA 57.088 29.630 0.00 0.00 0.00 3.36
8762 9773 9.230122 TGTGTCAATCTAATCAAGCAAGAATTA 57.770 29.630 0.00 0.00 0.00 1.40
8763 9774 8.114331 TGTGTCAATCTAATCAAGCAAGAATT 57.886 30.769 0.00 0.00 0.00 2.17
8764 9775 7.692460 TGTGTCAATCTAATCAAGCAAGAAT 57.308 32.000 0.00 0.00 0.00 2.40
8765 9776 7.609146 AGATGTGTCAATCTAATCAAGCAAGAA 59.391 33.333 0.00 0.00 35.09 2.52
8766 9777 7.108194 AGATGTGTCAATCTAATCAAGCAAGA 58.892 34.615 0.00 0.00 35.09 3.02
8767 9778 7.317842 AGATGTGTCAATCTAATCAAGCAAG 57.682 36.000 0.00 0.00 35.09 4.01
8768 9779 6.317140 GGAGATGTGTCAATCTAATCAAGCAA 59.683 38.462 0.00 0.00 37.03 3.91
8769 9780 5.819379 GGAGATGTGTCAATCTAATCAAGCA 59.181 40.000 0.00 0.00 37.03 3.91
8770 9781 6.054295 AGGAGATGTGTCAATCTAATCAAGC 58.946 40.000 0.00 0.00 37.03 4.01
8771 9782 7.226325 GGAAGGAGATGTGTCAATCTAATCAAG 59.774 40.741 0.00 0.00 37.03 3.02
8772 9783 7.050377 GGAAGGAGATGTGTCAATCTAATCAA 58.950 38.462 0.00 0.00 37.03 2.57
8773 9784 6.408548 GGGAAGGAGATGTGTCAATCTAATCA 60.409 42.308 0.00 0.00 37.03 2.57
8774 9785 5.994668 GGGAAGGAGATGTGTCAATCTAATC 59.005 44.000 0.00 0.00 37.03 1.75
8775 9786 5.669447 AGGGAAGGAGATGTGTCAATCTAAT 59.331 40.000 0.00 0.00 37.03 1.73
8776 9787 5.032846 AGGGAAGGAGATGTGTCAATCTAA 58.967 41.667 0.00 0.00 37.03 2.10
8777 9788 4.624913 AGGGAAGGAGATGTGTCAATCTA 58.375 43.478 0.00 0.00 37.03 1.98
8778 9789 3.458831 AGGGAAGGAGATGTGTCAATCT 58.541 45.455 0.00 0.00 39.66 2.40
8779 9790 3.922171 AGGGAAGGAGATGTGTCAATC 57.078 47.619 0.00 0.00 0.00 2.67
8780 9791 5.983333 ATAAGGGAAGGAGATGTGTCAAT 57.017 39.130 0.00 0.00 0.00 2.57
8781 9792 8.010697 TCTATATAAGGGAAGGAGATGTGTCAA 58.989 37.037 0.00 0.00 0.00 3.18
8782 9793 7.535738 TCTATATAAGGGAAGGAGATGTGTCA 58.464 38.462 0.00 0.00 0.00 3.58
8783 9794 7.891183 TCTCTATATAAGGGAAGGAGATGTGTC 59.109 40.741 0.00 0.00 29.05 3.67
8784 9795 7.770662 TCTCTATATAAGGGAAGGAGATGTGT 58.229 38.462 0.00 0.00 29.05 3.72
8785 9796 7.341769 CCTCTCTATATAAGGGAAGGAGATGTG 59.658 44.444 0.00 0.00 32.99 3.21
8786 9797 7.020168 ACCTCTCTATATAAGGGAAGGAGATGT 59.980 40.741 4.37 2.42 32.99 3.06
8787 9798 7.418378 ACCTCTCTATATAAGGGAAGGAGATG 58.582 42.308 4.37 1.92 32.99 2.90
8788 9799 7.612953 ACCTCTCTATATAAGGGAAGGAGAT 57.387 40.000 4.37 0.00 32.99 2.75
8789 9800 7.423443 AACCTCTCTATATAAGGGAAGGAGA 57.577 40.000 4.37 1.09 32.99 3.71
8790 9801 9.027202 GTAAACCTCTCTATATAAGGGAAGGAG 57.973 40.741 4.37 0.00 32.99 3.69
8791 9802 8.744365 AGTAAACCTCTCTATATAAGGGAAGGA 58.256 37.037 4.37 0.00 32.99 3.36
8792 9803 8.959676 AGTAAACCTCTCTATATAAGGGAAGG 57.040 38.462 4.37 0.00 32.99 3.46
8794 9805 9.947189 TCAAGTAAACCTCTCTATATAAGGGAA 57.053 33.333 4.37 0.00 32.99 3.97
8795 9806 9.364653 GTCAAGTAAACCTCTCTATATAAGGGA 57.635 37.037 4.37 0.00 34.31 4.20
8796 9807 9.369672 AGTCAAGTAAACCTCTCTATATAAGGG 57.630 37.037 4.37 0.00 34.31 3.95
8803 9814 8.471609 GCTTAGAAGTCAAGTAAACCTCTCTAT 58.528 37.037 0.00 0.00 0.00 1.98
8804 9815 7.450634 TGCTTAGAAGTCAAGTAAACCTCTCTA 59.549 37.037 0.00 0.00 0.00 2.43
8805 9816 6.267928 TGCTTAGAAGTCAAGTAAACCTCTCT 59.732 38.462 0.00 0.00 0.00 3.10
8806 9817 6.456501 TGCTTAGAAGTCAAGTAAACCTCTC 58.543 40.000 0.00 0.00 0.00 3.20
8807 9818 6.420913 TGCTTAGAAGTCAAGTAAACCTCT 57.579 37.500 0.00 0.00 0.00 3.69
8808 9819 6.929606 TCTTGCTTAGAAGTCAAGTAAACCTC 59.070 38.462 17.90 0.00 39.25 3.85
8809 9820 6.706716 GTCTTGCTTAGAAGTCAAGTAAACCT 59.293 38.462 17.90 0.00 39.25 3.50
8810 9821 6.706716 AGTCTTGCTTAGAAGTCAAGTAAACC 59.293 38.462 17.90 8.68 39.25 3.27
8811 9822 7.716768 AGTCTTGCTTAGAAGTCAAGTAAAC 57.283 36.000 17.90 12.65 39.25 2.01
8812 9823 9.257651 GTAAGTCTTGCTTAGAAGTCAAGTAAA 57.742 33.333 17.90 5.18 40.07 2.01
8813 9824 8.639761 AGTAAGTCTTGCTTAGAAGTCAAGTAA 58.360 33.333 17.90 5.65 40.07 2.24
8814 9825 8.179509 AGTAAGTCTTGCTTAGAAGTCAAGTA 57.820 34.615 17.90 7.85 40.07 2.24
8815 9826 7.056844 AGTAAGTCTTGCTTAGAAGTCAAGT 57.943 36.000 17.90 8.47 40.07 3.16
8816 9827 7.791949 CAAGTAAGTCTTGCTTAGAAGTCAAG 58.208 38.462 14.63 14.86 45.37 3.02
8817 9828 7.715265 CAAGTAAGTCTTGCTTAGAAGTCAA 57.285 36.000 14.63 0.00 45.37 3.18
8830 9841 6.420913 TTGCTTAGAGGTCAAGTAAGTCTT 57.579 37.500 0.00 0.00 36.75 3.01
8831 9842 5.567823 GCTTGCTTAGAGGTCAAGTAAGTCT 60.568 44.000 12.40 0.00 43.50 3.24
8832 9843 4.627900 GCTTGCTTAGAGGTCAAGTAAGTC 59.372 45.833 12.40 4.26 43.50 3.01
8833 9844 4.570930 GCTTGCTTAGAGGTCAAGTAAGT 58.429 43.478 12.40 0.00 43.50 2.24
8834 9845 3.614616 CGCTTGCTTAGAGGTCAAGTAAG 59.385 47.826 8.11 8.11 44.06 2.34
8835 9846 3.257375 TCGCTTGCTTAGAGGTCAAGTAA 59.743 43.478 0.00 0.00 39.36 2.24
8836 9847 2.823747 TCGCTTGCTTAGAGGTCAAGTA 59.176 45.455 0.00 0.00 39.36 2.24
8837 9848 1.618837 TCGCTTGCTTAGAGGTCAAGT 59.381 47.619 0.00 0.00 39.36 3.16
8838 9849 1.996191 GTCGCTTGCTTAGAGGTCAAG 59.004 52.381 0.00 0.00 39.95 3.02
8839 9850 1.337823 GGTCGCTTGCTTAGAGGTCAA 60.338 52.381 0.00 0.00 0.00 3.18
8840 9851 0.246635 GGTCGCTTGCTTAGAGGTCA 59.753 55.000 0.00 0.00 0.00 4.02
8841 9852 0.460459 GGGTCGCTTGCTTAGAGGTC 60.460 60.000 0.00 0.00 0.00 3.85
8842 9853 0.905337 AGGGTCGCTTGCTTAGAGGT 60.905 55.000 0.00 0.00 0.00 3.85
8843 9854 0.460987 CAGGGTCGCTTGCTTAGAGG 60.461 60.000 0.00 0.00 0.00 3.69
8844 9855 1.086634 GCAGGGTCGCTTGCTTAGAG 61.087 60.000 0.00 0.00 37.35 2.43
8845 9856 1.079127 GCAGGGTCGCTTGCTTAGA 60.079 57.895 0.00 0.00 37.35 2.10
8846 9857 2.456119 CGCAGGGTCGCTTGCTTAG 61.456 63.158 8.78 0.00 38.16 2.18
8847 9858 2.434185 CGCAGGGTCGCTTGCTTA 60.434 61.111 8.78 0.00 38.16 3.09
8861 9872 2.107041 AAACCTCCATGTCGTCCGCA 62.107 55.000 0.00 0.00 0.00 5.69
8879 9890 1.943693 GCACTTCGCTGCGCAAAAA 60.944 52.632 18.65 5.40 37.77 1.94
8880 9891 2.353376 GCACTTCGCTGCGCAAAA 60.353 55.556 18.65 5.79 37.77 2.44
8895 9906 2.032528 CCGCTCCTCCAAGTTGCA 59.967 61.111 0.00 0.00 0.00 4.08
8966 9977 1.000171 CGATGAGGCTACATGCTGCTA 60.000 52.381 0.00 0.00 42.39 3.49
8973 9984 1.364171 GACGGCGATGAGGCTACAT 59.636 57.895 16.62 0.00 44.22 2.29
8976 9987 2.515290 TCGACGGCGATGAGGCTA 60.515 61.111 10.67 0.00 42.51 3.93
9038 10049 3.126001 TCCAGCAGATCAAGTTTTCGT 57.874 42.857 0.00 0.00 0.00 3.85
9041 10052 3.094572 CCCATCCAGCAGATCAAGTTTT 58.905 45.455 0.00 0.00 30.59 2.43
9072 10083 0.391661 CATAAGCACCGCCACTGTCT 60.392 55.000 0.00 0.00 0.00 3.41
9078 10089 1.377987 GTTCCCATAAGCACCGCCA 60.378 57.895 0.00 0.00 0.00 5.69
9088 10099 1.027357 GCGACGACCTAGTTCCCATA 58.973 55.000 0.00 0.00 0.00 2.74
9097 10108 1.303074 ACAGGACTGCGACGACCTA 60.303 57.895 0.00 0.00 0.00 3.08
9113 10124 1.045407 GTATGGGATGCCCTACGACA 58.955 55.000 0.00 0.00 45.70 4.35
9134 10145 3.108343 CGCCGGTCATCTCGTACT 58.892 61.111 1.90 0.00 0.00 2.73
9182 10197 1.136828 ACACCAACAGAAGCTACCCA 58.863 50.000 0.00 0.00 0.00 4.51
9254 10271 3.001514 GCATCAGGGCCTTCCTCA 58.998 61.111 1.32 0.00 46.12 3.86
9279 10296 1.263356 TCTTGTAGTTACGGCAGGCT 58.737 50.000 0.00 0.00 0.00 4.58
9291 10308 4.388165 CAGATGATAGCCGCAATCTTGTAG 59.612 45.833 0.00 0.00 0.00 2.74
9293 10310 3.136763 CAGATGATAGCCGCAATCTTGT 58.863 45.455 0.00 0.00 0.00 3.16
9296 10313 1.347050 AGCAGATGATAGCCGCAATCT 59.653 47.619 0.00 0.00 0.00 2.40
9322 10339 4.154347 GCCTGCCCTCGTCCTCAG 62.154 72.222 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.