Multiple sequence alignment - TraesCS3D01G186300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G186300 chr3D 100.000 5346 0 0 1 5346 172033642 172028297 0.000000e+00 9873.0
1 TraesCS3D01G186300 chr3A 94.306 3934 171 25 864 4785 209656802 209652910 0.000000e+00 5975.0
2 TraesCS3D01G186300 chr3A 88.889 117 11 1 5093 5209 182873016 182873130 5.580000e-30 143.0
3 TraesCS3D01G186300 chr3A 85.321 109 4 3 5241 5346 209604005 209603906 9.470000e-18 102.0
4 TraesCS3D01G186300 chr3A 97.297 37 1 0 4978 5014 209636900 209636864 4.470000e-06 63.9
5 TraesCS3D01G186300 chr3B 93.728 2264 90 24 756 3003 250578241 250576014 0.000000e+00 3347.0
6 TraesCS3D01G186300 chr3B 94.242 2032 89 18 3001 5012 250575932 250573909 0.000000e+00 3079.0
7 TraesCS3D01G186300 chr3B 90.984 122 6 3 5093 5210 488875300 488875420 5.540000e-35 159.0
8 TraesCS3D01G186300 chr3B 89.565 115 6 4 5100 5209 499501518 499501405 2.010000e-29 141.0
9 TraesCS3D01G186300 chr7D 83.487 757 90 13 1 754 554480978 554480254 0.000000e+00 673.0
10 TraesCS3D01G186300 chr1D 81.871 684 98 19 79 749 422817182 422817852 2.180000e-153 553.0
11 TraesCS3D01G186300 chr1D 96.471 85 3 0 5011 5095 342066027 342066111 2.010000e-29 141.0
12 TraesCS3D01G186300 chr1D 95.294 85 4 0 5011 5095 118808859 118808943 9.340000e-28 135.0
13 TraesCS3D01G186300 chr1D 71.906 509 118 19 1 499 118981 119474 2.020000e-24 124.0
14 TraesCS3D01G186300 chr6A 88.525 122 8 4 5093 5209 116138132 116138012 5.580000e-30 143.0
15 TraesCS3D01G186300 chr6A 89.796 98 8 1 5000 5095 398132686 398132783 2.020000e-24 124.0
16 TraesCS3D01G186300 chr4B 90.090 111 9 2 5100 5209 537251287 537251178 5.580000e-30 143.0
17 TraesCS3D01G186300 chr4B 88.793 116 7 4 5100 5210 419275116 419275002 2.600000e-28 137.0
18 TraesCS3D01G186300 chr7B 89.565 115 6 4 5100 5209 73864767 73864880 2.010000e-29 141.0
19 TraesCS3D01G186300 chr2B 88.793 116 7 3 5100 5210 302023707 302023821 2.600000e-28 137.0
20 TraesCS3D01G186300 chr7A 95.294 85 4 0 5011 5095 503449023 503448939 9.340000e-28 135.0
21 TraesCS3D01G186300 chr7A 85.714 91 13 0 1 91 75178496 75178586 4.410000e-16 97.1
22 TraesCS3D01G186300 chr7A 85.714 91 13 0 1 91 75290408 75290318 4.410000e-16 97.1
23 TraesCS3D01G186300 chr6D 88.596 114 9 2 5100 5209 205405995 205405882 9.340000e-28 135.0
24 TraesCS3D01G186300 chr6B 95.294 85 4 0 5011 5095 695537630 695537546 9.340000e-28 135.0
25 TraesCS3D01G186300 chr6B 93.182 88 6 0 5008 5095 636485877 636485964 4.350000e-26 130.0
26 TraesCS3D01G186300 chr5D 89.796 98 8 1 5000 5095 175767312 175767409 2.020000e-24 124.0
27 TraesCS3D01G186300 chr5D 92.941 85 6 0 5011 5095 526115646 526115562 2.020000e-24 124.0
28 TraesCS3D01G186300 chr1A 89.796 98 8 1 5000 5095 161229227 161229324 2.020000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G186300 chr3D 172028297 172033642 5345 True 9873 9873 100.000 1 5346 1 chr3D.!!$R1 5345
1 TraesCS3D01G186300 chr3A 209652910 209656802 3892 True 5975 5975 94.306 864 4785 1 chr3A.!!$R3 3921
2 TraesCS3D01G186300 chr3B 250573909 250578241 4332 True 3213 3347 93.985 756 5012 2 chr3B.!!$R2 4256
3 TraesCS3D01G186300 chr7D 554480254 554480978 724 True 673 673 83.487 1 754 1 chr7D.!!$R1 753
4 TraesCS3D01G186300 chr1D 422817182 422817852 670 False 553 553 81.871 79 749 1 chr1D.!!$F4 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 601 0.031585 GTCGGCTTTTTGGTGGGTTC 59.968 55.000 0.0 0.0 0.00 3.62 F
851 859 0.179073 GTCTGGATGGGATGGACGTG 60.179 60.000 0.0 0.0 0.00 4.49 F
852 860 1.146930 CTGGATGGGATGGACGTGG 59.853 63.158 0.0 0.0 0.00 4.94 F
963 979 1.626747 CTGTCATCACTGCTCAGTCG 58.373 55.000 0.0 0.0 40.20 4.18 F
998 1014 1.973281 CCGTGCCACTGCCAAATCT 60.973 57.895 0.0 0.0 36.33 2.40 F
1709 1726 2.065906 TTGGCTCCGTTCCGTTTTGC 62.066 55.000 0.0 0.0 0.00 3.68 F
3606 3714 1.312815 AGCAGCTTGGTCTTGTTCAC 58.687 50.000 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2501 2525 2.615912 GCAGAAGAAACAAGTCAGCACT 59.384 45.455 0.0 0.0 0.00 4.40 R
2823 2847 6.483974 TGAAACTAGAAACGAACAGCCATTTA 59.516 34.615 0.0 0.0 0.00 1.40 R
2861 2885 6.877611 ATAAGAATGAACGGAAACACAAGT 57.122 33.333 0.0 0.0 0.00 3.16 R
2862 2886 7.535258 CAGAATAAGAATGAACGGAAACACAAG 59.465 37.037 0.0 0.0 0.00 3.16 R
3445 3553 1.134007 CAGCTACCTGGAATGGCATCA 60.134 52.381 0.0 0.0 35.38 3.07 R
3999 4111 2.557869 TGGAGCATGTAAAGGGGTAGT 58.442 47.619 0.0 0.0 0.00 2.73 R
5262 5396 0.038166 ATGGCCGGTTTGTCACAGAT 59.962 50.000 1.9 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.860009 TGGTATGCTAGAGTACCTCCG 58.140 52.381 18.98 0.00 40.78 4.63
44 45 3.502979 GGTATGCTAGAGTACCTCCGAAG 59.497 52.174 13.78 0.00 37.85 3.79
50 51 4.338682 GCTAGAGTACCTCCGAAGATCAAA 59.661 45.833 0.00 0.00 0.00 2.69
68 69 2.083167 AAATTTTCATGTGGCAGGCG 57.917 45.000 0.00 0.00 0.00 5.52
73 74 0.745486 TTCATGTGGCAGGCGATGAG 60.745 55.000 8.12 0.00 0.00 2.90
85 86 4.899239 GATGAGGGGGCGTCTGCG 62.899 72.222 0.00 0.00 44.10 5.18
110 111 5.700832 TGCTGTTGATCAGATTAAGAAACGT 59.299 36.000 0.00 0.00 46.27 3.99
114 115 8.996024 TGTTGATCAGATTAAGAAACGTCATA 57.004 30.769 0.00 0.00 0.00 2.15
119 120 5.128827 TCAGATTAAGAAACGTCATAGCCCT 59.871 40.000 0.00 0.00 0.00 5.19
135 136 1.218316 CCTGGTACGGAGTTCTGCC 59.782 63.158 0.00 0.00 37.78 4.85
144 145 1.543429 CGGAGTTCTGCCCTCTTTGTT 60.543 52.381 0.00 0.00 0.00 2.83
171 172 0.976641 GGAGGACACTGACCACATCA 59.023 55.000 0.22 0.00 35.45 3.07
182 183 3.210227 TGACCACATCATGTTTCGTTGT 58.790 40.909 0.00 0.00 29.99 3.32
185 186 2.412716 CCACATCATGTTTCGTTGTCCG 60.413 50.000 0.00 0.00 38.13 4.79
187 188 0.802494 ATCATGTTTCGTTGTCCGCC 59.198 50.000 0.00 0.00 36.19 6.13
206 207 2.558313 GCGTCTTTGCTGTGGAGC 59.442 61.111 0.00 0.00 46.44 4.70
261 264 3.444703 TCTAATTTCTCTGCTCTCCGC 57.555 47.619 0.00 0.00 39.77 5.54
262 265 2.123342 CTAATTTCTCTGCTCTCCGCG 58.877 52.381 0.00 0.00 43.27 6.46
297 300 1.891811 CTGTCTGGTCAGCTCAAGAGA 59.108 52.381 0.32 0.00 0.00 3.10
311 314 4.354587 CTCAAGAGACTGTTTTGGTTTGC 58.645 43.478 0.00 0.00 0.00 3.68
341 344 2.281276 GTGTTGGACCCCGTGGAC 60.281 66.667 0.00 0.00 34.81 4.02
342 345 2.768769 TGTTGGACCCCGTGGACA 60.769 61.111 0.00 0.00 34.81 4.02
345 348 2.073716 TTGGACCCCGTGGACAACT 61.074 57.895 0.00 0.00 34.81 3.16
346 349 0.763604 TTGGACCCCGTGGACAACTA 60.764 55.000 0.00 0.00 34.81 2.24
347 350 1.189524 TGGACCCCGTGGACAACTAG 61.190 60.000 0.00 0.00 34.81 2.57
348 351 0.901580 GGACCCCGTGGACAACTAGA 60.902 60.000 0.00 0.00 34.81 2.43
349 352 0.971386 GACCCCGTGGACAACTAGAA 59.029 55.000 0.00 0.00 34.81 2.10
350 353 1.345415 GACCCCGTGGACAACTAGAAA 59.655 52.381 0.00 0.00 34.81 2.52
351 354 1.346722 ACCCCGTGGACAACTAGAAAG 59.653 52.381 0.00 0.00 34.81 2.62
354 357 3.007182 CCCCGTGGACAACTAGAAAGTAA 59.993 47.826 0.00 0.00 33.75 2.24
381 384 5.701290 ACAAGTTTACTATTGAGCAGGTGTC 59.299 40.000 0.00 0.00 0.00 3.67
391 394 1.218316 GCAGGTGTCCCCTAACTCG 59.782 63.158 0.00 0.00 43.86 4.18
395 398 2.036098 TGTCCCCTAACTCGGCGA 59.964 61.111 10.14 10.14 0.00 5.54
401 404 2.036733 TCCCCTAACTCGGCGATTAATG 59.963 50.000 11.27 0.00 0.00 1.90
443 446 4.405116 TTTTTGCAGCAGTGGAAATCTT 57.595 36.364 0.00 0.00 42.83 2.40
449 452 3.924686 GCAGCAGTGGAAATCTTTGATTG 59.075 43.478 0.00 0.00 0.00 2.67
456 459 5.014544 AGTGGAAATCTTTGATTGAGGAGGA 59.985 40.000 0.00 0.00 0.00 3.71
460 463 6.604795 GGAAATCTTTGATTGAGGAGGATGAA 59.395 38.462 0.00 0.00 0.00 2.57
474 477 2.548127 GATGAAAAGGCGGCTGTGGC 62.548 60.000 14.21 3.52 37.82 5.01
545 548 2.187163 GGGCCAGGTCGTCTTAGC 59.813 66.667 4.39 0.00 0.00 3.09
546 549 2.359967 GGGCCAGGTCGTCTTAGCT 61.360 63.158 4.39 0.00 0.00 3.32
572 575 1.476891 TGCATCTTCTGGTCTACCGTC 59.523 52.381 0.00 0.00 39.43 4.79
576 579 1.002888 TCTTCTGGTCTACCGTCGTCT 59.997 52.381 0.00 0.00 39.43 4.18
582 585 1.325943 GGTCTACCGTCGTCTTAGTCG 59.674 57.143 0.00 0.00 0.00 4.18
591 594 2.157085 GTCGTCTTAGTCGGCTTTTTGG 59.843 50.000 0.00 0.00 0.00 3.28
592 595 2.140717 CGTCTTAGTCGGCTTTTTGGT 58.859 47.619 0.00 0.00 0.00 3.67
594 597 2.225727 GTCTTAGTCGGCTTTTTGGTGG 59.774 50.000 0.00 0.00 0.00 4.61
596 599 0.475044 TAGTCGGCTTTTTGGTGGGT 59.525 50.000 0.00 0.00 0.00 4.51
597 600 0.396556 AGTCGGCTTTTTGGTGGGTT 60.397 50.000 0.00 0.00 0.00 4.11
598 601 0.031585 GTCGGCTTTTTGGTGGGTTC 59.968 55.000 0.00 0.00 0.00 3.62
600 603 0.750249 CGGCTTTTTGGTGGGTTCTT 59.250 50.000 0.00 0.00 0.00 2.52
624 627 3.209097 GCCCGCGTGCCATATTGT 61.209 61.111 0.66 0.00 0.00 2.71
626 629 2.542907 CCCGCGTGCCATATTGTCC 61.543 63.158 4.92 0.00 0.00 4.02
636 640 1.681780 CCATATTGTCCGTTGTGGCCT 60.682 52.381 3.32 0.00 37.80 5.19
708 716 2.241160 TGTTACTCTCGTTGCCTGGTA 58.759 47.619 0.00 0.00 0.00 3.25
736 744 7.846644 TTATTAATTTAAAGTCGGGCTTCGA 57.153 32.000 0.00 0.00 46.77 3.71
745 753 2.762535 TCGGGCTTCGATCTTTTCTT 57.237 45.000 0.00 0.00 43.74 2.52
746 754 3.880047 TCGGGCTTCGATCTTTTCTTA 57.120 42.857 0.00 0.00 43.74 2.10
747 755 4.196626 TCGGGCTTCGATCTTTTCTTAA 57.803 40.909 0.00 0.00 43.74 1.85
748 756 4.571919 TCGGGCTTCGATCTTTTCTTAAA 58.428 39.130 0.00 0.00 43.74 1.52
749 757 4.998672 TCGGGCTTCGATCTTTTCTTAAAA 59.001 37.500 0.00 0.00 43.74 1.52
750 758 5.470777 TCGGGCTTCGATCTTTTCTTAAAAA 59.529 36.000 0.00 0.00 43.74 1.94
773 781 6.496338 AAATTAGAGGTGCTTTAAGGTTCG 57.504 37.500 0.00 0.00 0.00 3.95
775 783 5.726980 TTAGAGGTGCTTTAAGGTTCGTA 57.273 39.130 0.00 0.00 0.00 3.43
777 785 3.322828 AGAGGTGCTTTAAGGTTCGTACA 59.677 43.478 0.00 0.00 0.00 2.90
781 789 4.304939 GTGCTTTAAGGTTCGTACAGACT 58.695 43.478 0.00 0.00 0.00 3.24
833 841 9.533831 AACTAATCAAATTCTTTGTATGAGGGT 57.466 29.630 0.04 0.00 41.36 4.34
834 842 9.178758 ACTAATCAAATTCTTTGTATGAGGGTC 57.821 33.333 0.04 0.00 41.36 4.46
847 855 0.400525 GAGGGTCTGGATGGGATGGA 60.401 60.000 0.00 0.00 0.00 3.41
848 856 0.695803 AGGGTCTGGATGGGATGGAC 60.696 60.000 0.00 0.00 0.00 4.02
849 857 1.447643 GGTCTGGATGGGATGGACG 59.552 63.158 0.00 0.00 0.00 4.79
850 858 1.338136 GGTCTGGATGGGATGGACGT 61.338 60.000 0.00 0.00 0.00 4.34
851 859 0.179073 GTCTGGATGGGATGGACGTG 60.179 60.000 0.00 0.00 0.00 4.49
852 860 1.146930 CTGGATGGGATGGACGTGG 59.853 63.158 0.00 0.00 0.00 4.94
853 861 2.329539 CTGGATGGGATGGACGTGGG 62.330 65.000 0.00 0.00 0.00 4.61
854 862 2.203209 GATGGGATGGACGTGGGC 60.203 66.667 0.00 0.00 0.00 5.36
855 863 3.014538 ATGGGATGGACGTGGGCA 61.015 61.111 0.00 0.00 0.00 5.36
856 864 2.550699 GATGGGATGGACGTGGGCAA 62.551 60.000 0.00 0.00 0.00 4.52
857 865 2.750237 GGGATGGACGTGGGCAAC 60.750 66.667 0.00 0.00 0.00 4.17
903 919 3.602390 AATGTCAGTCGTCGTTTTTGG 57.398 42.857 0.00 0.00 0.00 3.28
955 971 3.201290 GACCCTATTGCTGTCATCACTG 58.799 50.000 0.00 0.00 0.00 3.66
963 979 1.626747 CTGTCATCACTGCTCAGTCG 58.373 55.000 0.00 0.00 40.20 4.18
998 1014 1.973281 CCGTGCCACTGCCAAATCT 60.973 57.895 0.00 0.00 36.33 2.40
1709 1726 2.065906 TTGGCTCCGTTCCGTTTTGC 62.066 55.000 0.00 0.00 0.00 3.68
1747 1764 8.789881 AAATGATGCAAAACATGTGAATTTTG 57.210 26.923 13.89 13.89 44.85 2.44
1755 1772 9.697250 GCAAAACATGTGAATTTTGATATGATG 57.303 29.630 19.94 0.00 44.85 3.07
1800 1817 3.928992 GCAGCTCAAAGAAAATTTAGGGC 59.071 43.478 0.00 0.00 0.00 5.19
1815 1832 7.978099 AATTTAGGGCTAACTGAAATCCATT 57.022 32.000 0.00 0.00 0.00 3.16
1885 1902 5.120830 CACCTGCAGTCTATGTTAACTGAAC 59.879 44.000 13.81 0.58 44.54 3.18
1906 1923 8.153479 TGAACAATAATGGATCAGGAATAACG 57.847 34.615 0.00 0.00 0.00 3.18
2013 2032 7.543868 AGATCACAGTTAGAAACTTCAGAATCG 59.456 37.037 0.00 0.00 40.46 3.34
2073 2092 7.616935 TGAGCTGATTCTCCATCCTTTATTTTT 59.383 33.333 0.00 0.00 32.22 1.94
2136 2155 5.382618 AGATTTGAGATGCTTGTTTGACC 57.617 39.130 0.00 0.00 0.00 4.02
2289 2308 4.018324 GTCAGAAAATAGGGGAGAAAGGGT 60.018 45.833 0.00 0.00 0.00 4.34
2294 2313 6.450352 AGAAAATAGGGGAGAAAGGGTGATAA 59.550 38.462 0.00 0.00 0.00 1.75
2320 2339 8.956426 ACTTTCTTTTAATGCCTTATCGATGAA 58.044 29.630 8.54 0.00 0.00 2.57
2356 2380 2.293399 GGAAATCATGTAACCCGATGCC 59.707 50.000 0.00 0.00 0.00 4.40
2501 2525 4.022416 GTGCATGGTTTATCTTGTGTTCCA 60.022 41.667 0.00 0.00 0.00 3.53
2620 2644 7.715249 GTCATAACATCTCCTTGCTACCAATAA 59.285 37.037 0.00 0.00 0.00 1.40
2760 2784 3.788227 ACTGTATTTGGGAGACTTGCA 57.212 42.857 0.00 0.00 0.00 4.08
3251 3359 7.489435 GTCTCAGATTTCGATATTTGTCTCACA 59.511 37.037 6.34 0.00 0.00 3.58
3252 3360 8.200120 TCTCAGATTTCGATATTTGTCTCACAT 58.800 33.333 6.34 0.00 0.00 3.21
3445 3553 7.003402 AGGCACACCATACAATACAATTTTT 57.997 32.000 0.00 0.00 39.06 1.94
3562 3670 6.208402 TCAGTGTGTACAATGTTATTTGCCAT 59.792 34.615 11.57 0.00 42.03 4.40
3606 3714 1.312815 AGCAGCTTGGTCTTGTTCAC 58.687 50.000 0.00 0.00 0.00 3.18
3757 3868 3.004734 GCTGCTTTTGTTACCATGTCTGT 59.995 43.478 0.00 0.00 0.00 3.41
3758 3869 4.539870 CTGCTTTTGTTACCATGTCTGTG 58.460 43.478 0.00 0.00 0.00 3.66
4023 4137 3.365472 ACCCCTTTACATGCTCCAATTC 58.635 45.455 0.00 0.00 0.00 2.17
4025 4139 3.382546 CCCCTTTACATGCTCCAATTCTG 59.617 47.826 0.00 0.00 0.00 3.02
4047 4161 3.054065 GGATGAATCTCACTTTCCCAGGT 60.054 47.826 0.00 0.00 0.00 4.00
4066 4180 9.310449 TCCCAGGTCATATTATAGAGTTTAGAC 57.690 37.037 0.00 0.00 0.00 2.59
4294 4409 3.846588 AGCTCTCCAGAAAGTTTATCCCA 59.153 43.478 0.00 0.00 0.00 4.37
4305 4420 9.757227 CAGAAAGTTTATCCCAATGTTTTGTAA 57.243 29.630 0.00 0.00 0.00 2.41
4424 4541 2.881074 CACTGCTGTCGCTGTAATACT 58.119 47.619 0.00 0.00 45.06 2.12
4465 4582 4.972440 GCTTTAGATTTGCCGATGAATGAC 59.028 41.667 0.00 0.00 0.00 3.06
4475 4592 3.873952 GCCGATGAATGACTCTTAGCTTT 59.126 43.478 0.00 0.00 0.00 3.51
4566 4683 6.397391 TCAGGCGATGAAATGGAAACAAGC 62.397 45.833 0.00 0.00 38.57 4.01
4589 4706 4.354208 AATGGAGTTTAGGGAGAGGAGA 57.646 45.455 0.00 0.00 0.00 3.71
4595 4712 5.537295 GGAGTTTAGGGAGAGGAGAGTATTC 59.463 48.000 0.00 0.00 0.00 1.75
4640 4757 8.641498 ATGAGAATTGGAGTATTTGTTTGTCT 57.359 30.769 0.00 0.00 0.00 3.41
4667 4784 7.551585 TCTTCAAGAGCTAGAGTAAAATGAGG 58.448 38.462 0.00 0.00 0.00 3.86
4719 4836 7.031226 TGATCTAAATATGCTTTTGTGCCTC 57.969 36.000 0.00 0.00 0.00 4.70
4761 4878 5.290158 GCATGTCAATTGTCATGGTGAAATC 59.710 40.000 32.44 18.30 40.33 2.17
4793 4910 7.455638 CCAGATCATATTATGAAATGGGGGTTT 59.544 37.037 21.78 2.25 43.50 3.27
4794 4911 8.526147 CAGATCATATTATGAAATGGGGGTTTC 58.474 37.037 10.30 0.55 43.50 2.78
4804 4921 5.430417 TGAAATGGGGGTTTCTATACTGCTA 59.570 40.000 0.00 0.00 38.58 3.49
4819 4936 1.952296 CTGCTAGAATTGGATGCCACC 59.048 52.381 0.00 0.00 30.78 4.61
4836 4958 3.668447 CCACCGGATGATCTGGAATAAG 58.332 50.000 26.38 10.09 45.95 1.73
4843 4965 5.336372 CGGATGATCTGGAATAAGTCTCTCC 60.336 48.000 0.00 0.00 0.00 3.71
4853 4976 1.388065 AAGTCTCTCCGGCCTCATCG 61.388 60.000 0.00 0.00 0.00 3.84
4863 4986 2.202797 CCTCATCGCACCTGACGG 60.203 66.667 0.00 0.00 0.00 4.79
4873 4996 4.363990 CCTGACGGTGTGCGCTCT 62.364 66.667 9.73 0.00 0.00 4.09
4880 5003 0.109458 CGGTGTGCGCTCTAACACTA 60.109 55.000 22.96 0.00 44.86 2.74
4884 5007 1.883926 TGTGCGCTCTAACACTAGTGA 59.116 47.619 29.30 7.00 37.68 3.41
4885 5008 2.095212 TGTGCGCTCTAACACTAGTGAG 60.095 50.000 29.30 16.68 37.68 3.51
4886 5009 1.472878 TGCGCTCTAACACTAGTGAGG 59.527 52.381 29.30 16.79 0.00 3.86
4888 5011 2.093106 CGCTCTAACACTAGTGAGGGT 58.907 52.381 29.30 13.00 42.98 4.34
4889 5012 2.159366 CGCTCTAACACTAGTGAGGGTG 60.159 54.545 29.30 18.59 38.88 4.61
4890 5013 2.417515 GCTCTAACACTAGTGAGGGTGC 60.418 54.545 29.30 21.65 38.88 5.01
4891 5014 3.093057 CTCTAACACTAGTGAGGGTGCT 58.907 50.000 29.30 1.64 38.88 4.40
4898 5032 0.976641 TAGTGAGGGTGCTGTTCCAG 59.023 55.000 0.00 0.00 34.12 3.86
4938 5072 2.914695 AGCATCTCCAGAAGCTCATC 57.085 50.000 0.38 0.00 44.68 2.92
4939 5073 2.400573 AGCATCTCCAGAAGCTCATCT 58.599 47.619 0.38 0.00 44.68 2.90
4940 5074 2.103432 AGCATCTCCAGAAGCTCATCTG 59.897 50.000 8.25 8.25 44.68 2.90
4942 5076 5.486039 AGCATCTCCAGAAGCTCATCTGAT 61.486 45.833 15.63 0.57 44.68 2.90
4949 5083 3.779759 AGAAGCTCATCTGATCGTTGTC 58.220 45.455 0.00 0.00 0.00 3.18
4951 5085 4.642437 AGAAGCTCATCTGATCGTTGTCTA 59.358 41.667 0.00 0.00 0.00 2.59
4960 5094 8.672815 TCATCTGATCGTTGTCTATATGAGATC 58.327 37.037 0.00 0.00 36.29 2.75
4961 5095 7.384439 TCTGATCGTTGTCTATATGAGATCC 57.616 40.000 0.00 0.00 36.29 3.36
4975 5109 2.093288 TGAGATCCAGACAACATGAGGC 60.093 50.000 0.00 0.00 0.00 4.70
5005 5139 4.248859 GCTCTTCAGCAGATTGTCTGTAA 58.751 43.478 8.58 1.55 45.94 2.41
5008 5142 7.125293 GCTCTTCAGCAGATTGTCTGTAAGAT 61.125 42.308 15.30 0.00 45.88 2.40
5043 5177 6.867550 GGAAAAATTCCTATGGAGTCCTTTG 58.132 40.000 11.33 5.12 46.57 2.77
5044 5178 6.127338 GGAAAAATTCCTATGGAGTCCTTTGG 60.127 42.308 16.46 16.46 46.57 3.28
5045 5179 5.536497 AAATTCCTATGGAGTCCTTTGGT 57.464 39.130 20.16 4.66 31.21 3.67
5046 5180 5.536497 AATTCCTATGGAGTCCTTTGGTT 57.464 39.130 20.16 9.46 31.21 3.67
5047 5181 5.536497 ATTCCTATGGAGTCCTTTGGTTT 57.464 39.130 20.16 9.89 31.21 3.27
5048 5182 4.301072 TCCTATGGAGTCCTTTGGTTTG 57.699 45.455 20.16 1.34 0.00 2.93
5049 5183 3.655777 TCCTATGGAGTCCTTTGGTTTGT 59.344 43.478 20.16 0.00 0.00 2.83
5050 5184 4.847512 TCCTATGGAGTCCTTTGGTTTGTA 59.152 41.667 20.16 3.48 0.00 2.41
5051 5185 5.045869 TCCTATGGAGTCCTTTGGTTTGTAG 60.046 44.000 20.16 3.63 0.00 2.74
5052 5186 3.502123 TGGAGTCCTTTGGTTTGTAGG 57.498 47.619 11.33 0.00 0.00 3.18
5053 5187 3.050089 TGGAGTCCTTTGGTTTGTAGGA 58.950 45.455 11.33 0.00 35.75 2.94
5054 5188 3.460340 TGGAGTCCTTTGGTTTGTAGGAA 59.540 43.478 11.33 0.00 39.65 3.36
5055 5189 4.105697 TGGAGTCCTTTGGTTTGTAGGAAT 59.894 41.667 11.33 0.00 39.65 3.01
5056 5190 4.459337 GGAGTCCTTTGGTTTGTAGGAATG 59.541 45.833 0.41 0.00 39.65 2.67
5057 5191 4.407365 AGTCCTTTGGTTTGTAGGAATGG 58.593 43.478 0.00 0.00 39.65 3.16
5058 5192 4.105697 AGTCCTTTGGTTTGTAGGAATGGA 59.894 41.667 0.00 0.00 39.65 3.41
5059 5193 5.016831 GTCCTTTGGTTTGTAGGAATGGAT 58.983 41.667 0.00 0.00 39.65 3.41
5060 5194 5.480422 GTCCTTTGGTTTGTAGGAATGGATT 59.520 40.000 0.00 0.00 39.65 3.01
5061 5195 5.714806 TCCTTTGGTTTGTAGGAATGGATTC 59.285 40.000 0.00 0.00 35.20 2.52
5107 5241 9.371136 GATCCAATCCTTCAAAGTAAAAATTCC 57.629 33.333 0.00 0.00 0.00 3.01
5108 5242 8.491045 TCCAATCCTTCAAAGTAAAAATTCCT 57.509 30.769 0.00 0.00 0.00 3.36
5109 5243 9.594936 TCCAATCCTTCAAAGTAAAAATTCCTA 57.405 29.630 0.00 0.00 0.00 2.94
5113 5247 9.997172 ATCCTTCAAAGTAAAAATTCCTATCCT 57.003 29.630 0.00 0.00 0.00 3.24
5118 5252 9.693739 TCAAAGTAAAAATTCCTATCCTATGCA 57.306 29.630 0.00 0.00 0.00 3.96
5121 5255 9.866655 AAGTAAAAATTCCTATCCTATGCATCA 57.133 29.630 0.19 0.00 0.00 3.07
5122 5256 9.866655 AGTAAAAATTCCTATCCTATGCATCAA 57.133 29.630 0.19 0.00 0.00 2.57
5125 5259 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
5126 5260 7.713734 AATTCCTATCCTATGCATCAAATGG 57.286 36.000 0.19 0.08 0.00 3.16
5127 5261 4.592942 TCCTATCCTATGCATCAAATGGC 58.407 43.478 0.19 0.00 0.00 4.40
5128 5262 4.043184 TCCTATCCTATGCATCAAATGGCA 59.957 41.667 0.19 0.00 45.23 4.92
5136 5270 4.380841 TGCATCAAATGGCATCTCTTTC 57.619 40.909 0.00 0.00 34.58 2.62
5137 5271 4.021229 TGCATCAAATGGCATCTCTTTCT 58.979 39.130 0.00 0.00 34.58 2.52
5138 5272 4.464951 TGCATCAAATGGCATCTCTTTCTT 59.535 37.500 0.00 0.00 34.58 2.52
5139 5273 5.046878 TGCATCAAATGGCATCTCTTTCTTT 60.047 36.000 0.00 0.00 34.58 2.52
5140 5274 6.153170 TGCATCAAATGGCATCTCTTTCTTTA 59.847 34.615 0.00 0.00 34.58 1.85
5141 5275 7.147794 TGCATCAAATGGCATCTCTTTCTTTAT 60.148 33.333 0.00 0.00 34.58 1.40
5142 5276 8.355169 GCATCAAATGGCATCTCTTTCTTTATA 58.645 33.333 0.00 0.00 0.00 0.98
5143 5277 9.894783 CATCAAATGGCATCTCTTTCTTTATAG 57.105 33.333 0.00 0.00 0.00 1.31
5144 5278 9.857656 ATCAAATGGCATCTCTTTCTTTATAGA 57.142 29.630 0.00 0.00 0.00 1.98
5145 5279 9.685276 TCAAATGGCATCTCTTTCTTTATAGAA 57.315 29.630 0.00 0.00 38.61 2.10
5150 5284 9.685276 TGGCATCTCTTTCTTTATAGAAATTGA 57.315 29.630 8.55 9.77 46.40 2.57
5161 5295 9.617523 TCTTTATAGAAATTGAGATGCATGTCA 57.382 29.630 21.70 21.70 0.00 3.58
5176 5310 7.976135 ATGCATGTCATCTTCCTATTCTTAC 57.024 36.000 0.00 0.00 0.00 2.34
5177 5311 6.888105 TGCATGTCATCTTCCTATTCTTACA 58.112 36.000 0.00 0.00 0.00 2.41
5178 5312 7.337938 TGCATGTCATCTTCCTATTCTTACAA 58.662 34.615 0.00 0.00 0.00 2.41
5179 5313 7.994911 TGCATGTCATCTTCCTATTCTTACAAT 59.005 33.333 0.00 0.00 0.00 2.71
5180 5314 9.494271 GCATGTCATCTTCCTATTCTTACAATA 57.506 33.333 0.00 0.00 0.00 1.90
5206 5340 6.773638 TCCTATCCTATGAATCAAAGAAGGC 58.226 40.000 0.00 0.00 0.00 4.35
5207 5341 5.942826 CCTATCCTATGAATCAAAGAAGGCC 59.057 44.000 0.00 0.00 0.00 5.19
5208 5342 5.659849 ATCCTATGAATCAAAGAAGGCCT 57.340 39.130 0.00 0.00 0.00 5.19
5209 5343 6.770286 ATCCTATGAATCAAAGAAGGCCTA 57.230 37.500 5.16 0.00 0.00 3.93
5210 5344 6.575244 TCCTATGAATCAAAGAAGGCCTAA 57.425 37.500 5.16 0.00 0.00 2.69
5211 5345 6.969043 TCCTATGAATCAAAGAAGGCCTAAA 58.031 36.000 5.16 0.00 0.00 1.85
5212 5346 7.586349 TCCTATGAATCAAAGAAGGCCTAAAT 58.414 34.615 5.16 0.00 0.00 1.40
5213 5347 7.503566 TCCTATGAATCAAAGAAGGCCTAAATG 59.496 37.037 5.16 3.26 0.00 2.32
5214 5348 7.286316 CCTATGAATCAAAGAAGGCCTAAATGT 59.714 37.037 5.16 0.00 0.00 2.71
5215 5349 6.515272 TGAATCAAAGAAGGCCTAAATGTC 57.485 37.500 5.16 0.00 0.00 3.06
5216 5350 6.248433 TGAATCAAAGAAGGCCTAAATGTCT 58.752 36.000 5.16 0.61 0.00 3.41
5217 5351 7.402054 TGAATCAAAGAAGGCCTAAATGTCTA 58.598 34.615 5.16 0.00 0.00 2.59
5218 5352 7.888021 TGAATCAAAGAAGGCCTAAATGTCTAA 59.112 33.333 5.16 0.00 0.00 2.10
5219 5353 8.650143 AATCAAAGAAGGCCTAAATGTCTAAA 57.350 30.769 5.16 0.00 0.00 1.85
5220 5354 8.829373 ATCAAAGAAGGCCTAAATGTCTAAAT 57.171 30.769 5.16 0.00 0.00 1.40
5221 5355 8.055279 TCAAAGAAGGCCTAAATGTCTAAATG 57.945 34.615 5.16 5.64 0.00 2.32
5222 5356 7.669722 TCAAAGAAGGCCTAAATGTCTAAATGT 59.330 33.333 5.16 0.00 0.00 2.71
5223 5357 7.396540 AAGAAGGCCTAAATGTCTAAATGTG 57.603 36.000 5.16 0.00 0.00 3.21
5224 5358 5.888161 AGAAGGCCTAAATGTCTAAATGTGG 59.112 40.000 5.16 0.00 0.00 4.17
5225 5359 5.450818 AGGCCTAAATGTCTAAATGTGGA 57.549 39.130 1.29 0.00 0.00 4.02
5226 5360 5.193679 AGGCCTAAATGTCTAAATGTGGAC 58.806 41.667 1.29 0.00 35.86 4.02
5228 5362 5.417580 GGCCTAAATGTCTAAATGTGGACAA 59.582 40.000 6.13 0.00 46.87 3.18
5229 5363 6.096846 GGCCTAAATGTCTAAATGTGGACAAT 59.903 38.462 6.13 0.00 46.87 2.71
5230 5364 7.196331 GCCTAAATGTCTAAATGTGGACAATC 58.804 38.462 6.13 0.00 46.87 2.67
5231 5365 7.409697 CCTAAATGTCTAAATGTGGACAATCG 58.590 38.462 6.13 0.00 46.87 3.34
5232 5366 7.279981 CCTAAATGTCTAAATGTGGACAATCGA 59.720 37.037 6.13 0.00 46.87 3.59
5233 5367 7.630242 AAATGTCTAAATGTGGACAATCGAT 57.370 32.000 6.13 0.00 46.87 3.59
5234 5368 8.731275 AAATGTCTAAATGTGGACAATCGATA 57.269 30.769 6.13 0.00 46.87 2.92
5235 5369 7.715265 ATGTCTAAATGTGGACAATCGATAC 57.285 36.000 6.13 0.00 46.87 2.24
5236 5370 6.635755 TGTCTAAATGTGGACAATCGATACA 58.364 36.000 0.00 0.00 41.78 2.29
5237 5371 6.533723 TGTCTAAATGTGGACAATCGATACAC 59.466 38.462 0.00 6.90 41.78 2.90
5238 5372 6.757010 GTCTAAATGTGGACAATCGATACACT 59.243 38.462 17.52 0.07 35.40 3.55
5239 5373 7.919091 GTCTAAATGTGGACAATCGATACACTA 59.081 37.037 17.52 6.45 35.40 2.74
5240 5374 8.638873 TCTAAATGTGGACAATCGATACACTAT 58.361 33.333 17.52 10.27 33.44 2.12
5241 5375 7.482654 AAATGTGGACAATCGATACACTATG 57.517 36.000 17.52 7.29 33.44 2.23
5242 5376 4.368315 TGTGGACAATCGATACACTATGC 58.632 43.478 17.52 2.83 33.44 3.14
5243 5377 4.142049 TGTGGACAATCGATACACTATGCA 60.142 41.667 17.52 0.00 33.44 3.96
5244 5378 4.808895 GTGGACAATCGATACACTATGCAA 59.191 41.667 0.00 0.00 0.00 4.08
5245 5379 5.293324 GTGGACAATCGATACACTATGCAAA 59.707 40.000 0.00 0.00 0.00 3.68
5246 5380 6.017934 GTGGACAATCGATACACTATGCAAAT 60.018 38.462 0.00 0.00 0.00 2.32
5247 5381 6.018016 TGGACAATCGATACACTATGCAAATG 60.018 38.462 0.00 0.00 0.00 2.32
5248 5382 6.017934 GGACAATCGATACACTATGCAAATGT 60.018 38.462 0.00 0.00 0.00 2.71
5249 5383 6.948353 ACAATCGATACACTATGCAAATGTC 58.052 36.000 0.00 0.00 0.00 3.06
5250 5384 6.538381 ACAATCGATACACTATGCAAATGTCA 59.462 34.615 0.00 0.00 0.00 3.58
5251 5385 6.775939 ATCGATACACTATGCAAATGTCAG 57.224 37.500 0.00 0.00 0.00 3.51
5252 5386 4.507756 TCGATACACTATGCAAATGTCAGC 59.492 41.667 4.31 0.00 0.00 4.26
5253 5387 4.270808 CGATACACTATGCAAATGTCAGCA 59.729 41.667 4.31 0.00 45.92 4.41
5254 5388 3.837213 ACACTATGCAAATGTCAGCAC 57.163 42.857 0.00 0.00 44.49 4.40
5255 5389 3.148412 ACACTATGCAAATGTCAGCACA 58.852 40.909 0.00 0.00 44.49 4.57
5256 5390 3.569277 ACACTATGCAAATGTCAGCACAA 59.431 39.130 0.00 0.00 44.49 3.33
5257 5391 4.163552 CACTATGCAAATGTCAGCACAAG 58.836 43.478 0.00 0.00 44.49 3.16
5258 5392 2.074547 ATGCAAATGTCAGCACAAGC 57.925 45.000 0.00 0.00 44.49 4.01
5259 5393 0.745468 TGCAAATGTCAGCACAAGCA 59.255 45.000 0.00 0.00 45.49 3.91
5260 5394 1.134226 GCAAATGTCAGCACAAGCAC 58.866 50.000 0.00 0.00 45.49 4.40
5261 5395 1.536496 GCAAATGTCAGCACAAGCACA 60.536 47.619 0.00 0.00 45.49 4.57
5262 5396 2.811855 CAAATGTCAGCACAAGCACAA 58.188 42.857 0.00 0.00 45.49 3.33
5263 5397 3.386486 CAAATGTCAGCACAAGCACAAT 58.614 40.909 0.00 0.00 45.49 2.71
5264 5398 3.293311 AATGTCAGCACAAGCACAATC 57.707 42.857 0.00 0.00 45.49 2.67
5265 5399 1.971481 TGTCAGCACAAGCACAATCT 58.029 45.000 0.00 0.00 45.49 2.40
5266 5400 1.605232 TGTCAGCACAAGCACAATCTG 59.395 47.619 0.00 0.00 45.49 2.90
5267 5401 1.605710 GTCAGCACAAGCACAATCTGT 59.394 47.619 0.00 0.00 45.49 3.41
5268 5402 6.334225 ATGTCAGCACAAGCACAATCTGTG 62.334 45.833 2.35 2.35 42.88 3.66
5278 5412 0.951558 ACAATCTGTGACAAACCGGC 59.048 50.000 0.00 0.00 0.00 6.13
5279 5413 0.240945 CAATCTGTGACAAACCGGCC 59.759 55.000 0.00 0.00 0.00 6.13
5280 5414 0.179004 AATCTGTGACAAACCGGCCA 60.179 50.000 0.00 0.00 0.00 5.36
5281 5415 0.038166 ATCTGTGACAAACCGGCCAT 59.962 50.000 0.00 0.00 0.00 4.40
5282 5416 0.179004 TCTGTGACAAACCGGCCATT 60.179 50.000 0.00 0.00 0.00 3.16
5283 5417 0.673437 CTGTGACAAACCGGCCATTT 59.327 50.000 0.00 0.00 0.00 2.32
5284 5418 0.671251 TGTGACAAACCGGCCATTTC 59.329 50.000 0.00 0.00 0.00 2.17
5285 5419 0.386731 GTGACAAACCGGCCATTTCG 60.387 55.000 0.00 0.97 0.00 3.46
5286 5420 1.443702 GACAAACCGGCCATTTCGC 60.444 57.895 0.00 0.00 0.00 4.70
5287 5421 2.136196 GACAAACCGGCCATTTCGCA 62.136 55.000 0.00 0.00 0.00 5.10
5288 5422 1.444212 CAAACCGGCCATTTCGCAG 60.444 57.895 0.00 0.00 0.00 5.18
5294 5428 2.751436 GCCATTTCGCAGGGCAGA 60.751 61.111 5.35 0.00 46.92 4.26
5295 5429 3.056313 GCCATTTCGCAGGGCAGAC 62.056 63.158 5.35 0.00 46.92 3.51
5296 5430 2.753966 CCATTTCGCAGGGCAGACG 61.754 63.158 0.00 0.00 0.00 4.18
5297 5431 2.436646 ATTTCGCAGGGCAGACGG 60.437 61.111 0.00 0.00 0.00 4.79
5298 5432 3.976701 ATTTCGCAGGGCAGACGGG 62.977 63.158 0.00 0.00 0.00 5.28
5303 5437 4.641645 CAGGGCAGACGGGTGCAA 62.642 66.667 12.65 0.00 45.93 4.08
5304 5438 3.884774 AGGGCAGACGGGTGCAAA 61.885 61.111 12.65 0.00 45.93 3.68
5305 5439 3.365265 GGGCAGACGGGTGCAAAG 61.365 66.667 12.65 0.00 45.93 2.77
5306 5440 2.281484 GGCAGACGGGTGCAAAGA 60.281 61.111 12.65 0.00 45.93 2.52
5307 5441 2.617274 GGCAGACGGGTGCAAAGAC 61.617 63.158 12.65 0.00 45.93 3.01
5308 5442 1.598130 GCAGACGGGTGCAAAGACT 60.598 57.895 6.40 0.00 43.41 3.24
5309 5443 1.845809 GCAGACGGGTGCAAAGACTG 61.846 60.000 6.40 10.64 43.41 3.51
5325 5459 2.281414 TGCAAAGTAGCAGCGGCA 60.281 55.556 12.44 0.00 44.61 5.69
5326 5460 2.327343 TGCAAAGTAGCAGCGGCAG 61.327 57.895 12.44 0.00 44.61 4.85
5327 5461 2.034879 GCAAAGTAGCAGCGGCAGA 61.035 57.895 12.44 0.00 44.61 4.26
5328 5462 1.372087 GCAAAGTAGCAGCGGCAGAT 61.372 55.000 12.44 0.00 44.61 2.90
5329 5463 0.654683 CAAAGTAGCAGCGGCAGATC 59.345 55.000 12.44 0.00 44.61 2.75
5330 5464 0.250234 AAAGTAGCAGCGGCAGATCA 59.750 50.000 12.44 0.00 44.61 2.92
5331 5465 0.250234 AAGTAGCAGCGGCAGATCAA 59.750 50.000 12.44 0.00 44.61 2.57
5332 5466 0.250234 AGTAGCAGCGGCAGATCAAA 59.750 50.000 12.44 0.00 44.61 2.69
5333 5467 1.134280 AGTAGCAGCGGCAGATCAAAT 60.134 47.619 12.44 0.00 44.61 2.32
5334 5468 1.003116 GTAGCAGCGGCAGATCAAATG 60.003 52.381 12.44 0.00 44.61 2.32
5335 5469 1.065273 GCAGCGGCAGATCAAATGG 59.935 57.895 3.18 0.00 40.72 3.16
5336 5470 1.660560 GCAGCGGCAGATCAAATGGT 61.661 55.000 3.18 0.00 40.72 3.55
5337 5471 0.099968 CAGCGGCAGATCAAATGGTG 59.900 55.000 1.45 0.00 0.00 4.17
5338 5472 1.226773 GCGGCAGATCAAATGGTGC 60.227 57.895 0.00 0.00 35.07 5.01
5339 5473 1.660560 GCGGCAGATCAAATGGTGCT 61.661 55.000 0.00 0.00 36.15 4.40
5340 5474 0.379669 CGGCAGATCAAATGGTGCTC 59.620 55.000 0.00 0.00 36.15 4.26
5341 5475 0.379669 GGCAGATCAAATGGTGCTCG 59.620 55.000 0.00 0.00 36.15 5.03
5342 5476 0.248377 GCAGATCAAATGGTGCTCGC 60.248 55.000 0.00 0.00 32.97 5.03
5343 5477 1.376543 CAGATCAAATGGTGCTCGCT 58.623 50.000 0.00 0.00 0.00 4.93
5344 5478 1.329906 CAGATCAAATGGTGCTCGCTC 59.670 52.381 0.00 0.00 0.00 5.03
5345 5479 1.065926 AGATCAAATGGTGCTCGCTCA 60.066 47.619 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.209391 ACATGAAAATTTTGATCTTCGGAGGT 59.791 34.615 8.47 0.00 0.00 3.85
41 42 6.091713 CCTGCCACATGAAAATTTTGATCTTC 59.908 38.462 8.47 0.00 0.00 2.87
44 45 4.093850 GCCTGCCACATGAAAATTTTGATC 59.906 41.667 8.47 0.00 0.00 2.92
50 51 1.255882 TCGCCTGCCACATGAAAATT 58.744 45.000 0.00 0.00 0.00 1.82
68 69 4.899239 CGCAGACGCCCCCTCATC 62.899 72.222 0.00 0.00 33.11 2.92
77 78 2.554365 GATCAACAGCACGCAGACGC 62.554 60.000 0.00 0.00 45.53 5.19
85 86 6.017933 CGTTTCTTAATCTGATCAACAGCAC 58.982 40.000 0.00 0.00 45.38 4.40
91 92 7.224753 GGCTATGACGTTTCTTAATCTGATCAA 59.775 37.037 0.00 0.00 0.00 2.57
110 111 0.260816 ACTCCGTACCAGGGCTATGA 59.739 55.000 0.00 0.00 0.00 2.15
114 115 1.078710 AGAACTCCGTACCAGGGCT 59.921 57.895 0.00 0.00 0.00 5.19
119 120 1.229082 AGGGCAGAACTCCGTACCA 60.229 57.895 0.00 0.00 0.00 3.25
135 136 2.157738 CTCCAAGCTCCAACAAAGAGG 58.842 52.381 0.00 0.00 0.00 3.69
144 145 0.471780 TCAGTGTCCTCCAAGCTCCA 60.472 55.000 0.00 0.00 0.00 3.86
185 186 4.389576 CACAGCAAAGACGCCGGC 62.390 66.667 19.07 19.07 0.00 6.13
187 188 2.664851 TCCACAGCAAAGACGCCG 60.665 61.111 0.00 0.00 0.00 6.46
206 207 1.680522 CCATCCACTCCCTGAGACCG 61.681 65.000 0.00 0.00 33.32 4.79
207 208 1.341156 CCCATCCACTCCCTGAGACC 61.341 65.000 0.00 0.00 33.32 3.85
212 213 3.324713 GACCCCATCCACTCCCTG 58.675 66.667 0.00 0.00 0.00 4.45
261 264 4.388499 AGGGTGGCCGCAAGTACG 62.388 66.667 19.98 0.00 0.00 3.67
262 265 2.746277 CAGGGTGGCCGCAAGTAC 60.746 66.667 19.98 0.00 0.00 2.73
297 300 2.099098 CGAGAAGGCAAACCAAAACAGT 59.901 45.455 0.00 0.00 39.06 3.55
311 314 1.308069 CCAACACATGGCCGAGAAGG 61.308 60.000 0.00 0.00 43.80 3.46
335 338 7.007313 TGTTTTTACTTTCTAGTTGTCCACG 57.993 36.000 0.00 0.00 35.78 4.94
351 354 9.394477 CCTGCTCAATAGTAAACTTGTTTTTAC 57.606 33.333 4.00 0.00 40.75 2.01
354 357 7.068226 ACACCTGCTCAATAGTAAACTTGTTTT 59.932 33.333 4.00 0.00 0.00 2.43
381 384 2.224209 ACATTAATCGCCGAGTTAGGGG 60.224 50.000 0.00 0.00 44.59 4.79
391 394 5.967674 CAGTTTGAAGATGACATTAATCGCC 59.032 40.000 0.00 0.00 0.00 5.54
395 398 8.585471 ATGGACAGTTTGAAGATGACATTAAT 57.415 30.769 0.00 0.00 0.00 1.40
401 404 9.132521 CAAAAATATGGACAGTTTGAAGATGAC 57.867 33.333 0.00 0.00 32.18 3.06
443 446 4.019174 GCCTTTTCATCCTCCTCAATCAA 58.981 43.478 0.00 0.00 0.00 2.57
449 452 1.098129 GCCGCCTTTTCATCCTCCTC 61.098 60.000 0.00 0.00 0.00 3.71
456 459 2.639327 GCCACAGCCGCCTTTTCAT 61.639 57.895 0.00 0.00 0.00 2.57
477 480 2.887568 GCACACGAGCGATGAGGG 60.888 66.667 0.00 0.00 0.00 4.30
499 502 4.223953 TCCCGGAGATAGAAGTAGCAAAT 58.776 43.478 0.73 0.00 0.00 2.32
501 504 3.223435 CTCCCGGAGATAGAAGTAGCAA 58.777 50.000 9.01 0.00 0.00 3.91
502 505 2.489255 CCTCCCGGAGATAGAAGTAGCA 60.489 54.545 16.69 0.00 0.00 3.49
545 548 1.467734 GACCAGAAGATGCAGCACAAG 59.532 52.381 4.07 0.00 0.00 3.16
546 549 1.072806 AGACCAGAAGATGCAGCACAA 59.927 47.619 4.07 0.00 0.00 3.33
553 556 1.534175 CGACGGTAGACCAGAAGATGC 60.534 57.143 0.00 0.00 35.14 3.91
572 575 2.096417 CACCAAAAAGCCGACTAAGACG 60.096 50.000 0.00 0.00 0.00 4.18
576 579 1.133730 ACCCACCAAAAAGCCGACTAA 60.134 47.619 0.00 0.00 0.00 2.24
582 585 1.070134 GGAAGAACCCACCAAAAAGCC 59.930 52.381 0.00 0.00 0.00 4.35
594 597 4.426313 CGGGCCAGGGGAAGAACC 62.426 72.222 4.39 0.00 38.08 3.62
610 613 1.701545 AACGGACAATATGGCACGCG 61.702 55.000 3.53 3.53 0.00 6.01
641 645 7.759489 AGTATCAAACCAACAAGCAAAGATA 57.241 32.000 0.00 0.00 0.00 1.98
642 646 6.655078 AGTATCAAACCAACAAGCAAAGAT 57.345 33.333 0.00 0.00 0.00 2.40
645 649 5.293079 GCAAAGTATCAAACCAACAAGCAAA 59.707 36.000 0.00 0.00 0.00 3.68
646 650 4.808364 GCAAAGTATCAAACCAACAAGCAA 59.192 37.500 0.00 0.00 0.00 3.91
648 652 3.425193 CGCAAAGTATCAAACCAACAAGC 59.575 43.478 0.00 0.00 0.00 4.01
649 653 4.440758 CACGCAAAGTATCAAACCAACAAG 59.559 41.667 0.00 0.00 0.00 3.16
650 654 4.142359 ACACGCAAAGTATCAAACCAACAA 60.142 37.500 0.00 0.00 0.00 2.83
652 656 3.728718 CACACGCAAAGTATCAAACCAAC 59.271 43.478 0.00 0.00 0.00 3.77
654 658 2.287308 GCACACGCAAAGTATCAAACCA 60.287 45.455 0.00 0.00 38.36 3.67
656 660 2.973224 CAGCACACGCAAAGTATCAAAC 59.027 45.455 0.00 0.00 42.27 2.93
657 661 2.031245 CCAGCACACGCAAAGTATCAAA 60.031 45.455 0.00 0.00 42.27 2.69
708 716 7.640597 AGCCCGACTTTAAATTAATAAAGCT 57.359 32.000 9.63 1.41 43.53 3.74
748 756 7.013942 ACGAACCTTAAAGCACCTCTAATTTTT 59.986 33.333 0.00 0.00 0.00 1.94
749 757 6.489022 ACGAACCTTAAAGCACCTCTAATTTT 59.511 34.615 0.00 0.00 0.00 1.82
750 758 6.002082 ACGAACCTTAAAGCACCTCTAATTT 58.998 36.000 0.00 0.00 0.00 1.82
751 759 5.557866 ACGAACCTTAAAGCACCTCTAATT 58.442 37.500 0.00 0.00 0.00 1.40
752 760 5.161943 ACGAACCTTAAAGCACCTCTAAT 57.838 39.130 0.00 0.00 0.00 1.73
753 761 4.612264 ACGAACCTTAAAGCACCTCTAA 57.388 40.909 0.00 0.00 0.00 2.10
754 762 4.523943 TGTACGAACCTTAAAGCACCTCTA 59.476 41.667 0.00 0.00 0.00 2.43
791 799 2.900122 AGTTTGATTGATTGGTCGCG 57.100 45.000 0.00 0.00 0.00 5.87
823 831 1.293763 TCCCATCCAGACCCTCATACA 59.706 52.381 0.00 0.00 0.00 2.29
824 832 2.103153 TCCCATCCAGACCCTCATAC 57.897 55.000 0.00 0.00 0.00 2.39
827 835 0.695462 CCATCCCATCCAGACCCTCA 60.695 60.000 0.00 0.00 0.00 3.86
831 839 1.338136 ACGTCCATCCCATCCAGACC 61.338 60.000 0.00 0.00 0.00 3.85
832 840 0.179073 CACGTCCATCCCATCCAGAC 60.179 60.000 0.00 0.00 0.00 3.51
833 841 1.337384 CCACGTCCATCCCATCCAGA 61.337 60.000 0.00 0.00 0.00 3.86
834 842 1.146930 CCACGTCCATCCCATCCAG 59.853 63.158 0.00 0.00 0.00 3.86
847 855 3.894947 GCGTTTGGTTGCCCACGT 61.895 61.111 8.22 0.00 41.67 4.49
848 856 4.973360 CGCGTTTGGTTGCCCACG 62.973 66.667 0.00 3.50 41.67 4.94
849 857 2.892542 AAACGCGTTTGGTTGCCCAC 62.893 55.000 34.36 0.00 41.67 4.61
850 858 2.711922 AAACGCGTTTGGTTGCCCA 61.712 52.632 34.36 0.00 39.65 5.36
851 859 2.105328 AAACGCGTTTGGTTGCCC 59.895 55.556 34.36 0.00 0.00 5.36
852 860 3.304613 CAAACGCGTTTGGTTGCC 58.695 55.556 42.59 0.00 44.47 4.52
859 867 1.375551 AAGAGACACCAAACGCGTTT 58.624 45.000 30.36 30.36 0.00 3.60
860 868 2.228138 TAAGAGACACCAAACGCGTT 57.772 45.000 20.79 20.79 0.00 4.84
861 869 2.228138 TTAAGAGACACCAAACGCGT 57.772 45.000 5.58 5.58 0.00 6.01
862 870 3.595709 TTTTAAGAGACACCAAACGCG 57.404 42.857 3.53 3.53 0.00 6.01
887 903 0.934496 CTGCCAAAAACGACGACTGA 59.066 50.000 0.00 0.00 0.00 3.41
888 904 0.934496 TCTGCCAAAAACGACGACTG 59.066 50.000 0.00 0.00 0.00 3.51
903 919 1.064654 GGAAAACGAGCATGGATCTGC 59.935 52.381 0.00 0.00 42.62 4.26
955 971 1.062294 CGTAGTGACTACCGACTGAGC 59.938 57.143 16.45 0.00 33.79 4.26
1563 1580 4.578516 CAGAAACATCAGTTACACACCCAA 59.421 41.667 0.00 0.00 36.84 4.12
1755 1772 6.976349 TGCAGTTCTGAATTTATGCATTGATC 59.024 34.615 3.54 0.00 38.64 2.92
1843 1860 5.048083 GCAGGTGTATGGAAGAACATTCAAA 60.048 40.000 0.00 0.00 31.39 2.69
1885 1902 9.450807 GTTTTCGTTATTCCTGATCCATTATTG 57.549 33.333 0.00 0.00 0.00 1.90
1956 1975 6.903340 AGGACCTTTTTATCTTAGCCCTTA 57.097 37.500 0.00 0.00 0.00 2.69
2013 2032 6.421405 CAAATAAAGCAAAACAAGACTTGGC 58.579 36.000 19.16 12.24 34.12 4.52
2136 2155 5.192927 TCCATGGTTAAGCTTATCCAGTTG 58.807 41.667 30.41 25.38 36.32 3.16
2177 2196 3.390967 TGAAAATGACCTGACACAGAGGA 59.609 43.478 0.00 0.00 34.37 3.71
2294 2313 8.506168 TCATCGATAAGGCATTAAAAGAAAGT 57.494 30.769 0.00 0.00 0.00 2.66
2501 2525 2.615912 GCAGAAGAAACAAGTCAGCACT 59.384 45.455 0.00 0.00 0.00 4.40
2698 2722 8.098286 TCTCCGGAATACTTTCTGAAAACAATA 58.902 33.333 5.23 0.00 40.14 1.90
2810 2834 7.201530 CGAACAGCCATTTACTAGAAAGTTAGG 60.202 40.741 0.00 0.00 37.15 2.69
2823 2847 6.483974 TGAAACTAGAAACGAACAGCCATTTA 59.516 34.615 0.00 0.00 0.00 1.40
2861 2885 6.877611 ATAAGAATGAACGGAAACACAAGT 57.122 33.333 0.00 0.00 0.00 3.16
2862 2886 7.535258 CAGAATAAGAATGAACGGAAACACAAG 59.465 37.037 0.00 0.00 0.00 3.16
3445 3553 1.134007 CAGCTACCTGGAATGGCATCA 60.134 52.381 0.00 0.00 35.38 3.07
3562 3670 7.972832 AATGAGTACGTAGAATGGTGAAAAA 57.027 32.000 0.00 0.00 0.00 1.94
3606 3714 8.991026 TCAAAAATGCTTCAATTTGGTCAATAG 58.009 29.630 0.00 0.00 34.39 1.73
3710 3819 7.253422 CACCTGCTATTTGGTAGATTTTTCAG 58.747 38.462 0.00 0.00 34.79 3.02
3999 4111 2.557869 TGGAGCATGTAAAGGGGTAGT 58.442 47.619 0.00 0.00 0.00 2.73
4023 4137 4.197750 CTGGGAAAGTGAGATTCATCCAG 58.802 47.826 0.00 0.00 34.22 3.86
4025 4139 3.054065 ACCTGGGAAAGTGAGATTCATCC 60.054 47.826 0.00 0.00 0.00 3.51
4047 4161 9.143155 TGTGCCTGTCTAAACTCTATAATATGA 57.857 33.333 0.00 0.00 0.00 2.15
4066 4180 3.956199 AGGGAACATCAAATATGTGCCTG 59.044 43.478 13.58 0.00 45.24 4.85
4305 4420 9.775854 CTCTCCATTGTATTTCATAGATCTGTT 57.224 33.333 5.18 0.00 0.00 3.16
4366 4481 5.462398 CCTGTAGAACAAGGATGTATTACGC 59.538 44.000 0.00 0.00 39.40 4.42
4367 4482 5.983720 CCCTGTAGAACAAGGATGTATTACG 59.016 44.000 0.00 0.00 39.40 3.18
4413 4530 4.209288 GCATACAAGACCAGTATTACAGCG 59.791 45.833 0.00 0.00 30.08 5.18
4414 4531 5.235186 CAGCATACAAGACCAGTATTACAGC 59.765 44.000 0.00 0.00 30.08 4.40
4424 4541 3.423539 AGCTTTCAGCATACAAGACCA 57.576 42.857 0.00 0.00 45.56 4.02
4452 4569 2.432146 AGCTAAGAGTCATTCATCGGCA 59.568 45.455 0.00 0.00 0.00 5.69
4465 4582 3.440522 GGTGCCCAAACTAAAGCTAAGAG 59.559 47.826 3.13 0.00 0.00 2.85
4475 4592 2.912956 AGAAGAGATGGTGCCCAAACTA 59.087 45.455 0.00 0.00 36.95 2.24
4489 4606 9.613428 TGAAAGAGAAACAAATTACAGAAGAGA 57.387 29.630 0.00 0.00 0.00 3.10
4562 4679 4.335416 TCTCCCTAAACTCCATTTGCTTG 58.665 43.478 0.00 0.00 0.00 4.01
4566 4683 4.471386 TCTCCTCTCCCTAAACTCCATTTG 59.529 45.833 0.00 0.00 0.00 2.32
4572 4689 5.537295 GGAATACTCTCCTCTCCCTAAACTC 59.463 48.000 0.00 0.00 32.21 3.01
4625 4742 9.657121 CTCTTGAAGAAAGACAAACAAATACTC 57.343 33.333 0.00 0.00 40.09 2.59
4640 4757 9.429359 CTCATTTTACTCTAGCTCTTGAAGAAA 57.571 33.333 0.00 0.00 0.00 2.52
4667 4784 4.568152 AGCAGTACACAATTTGTCCAAC 57.432 40.909 0.00 0.00 39.91 3.77
4719 4836 4.746611 ACATGCACATGATACATCAGTACG 59.253 41.667 17.19 0.00 41.20 3.67
4761 4878 7.913821 CCATTTCATAATATGATCTGGAATGCG 59.086 37.037 19.05 10.02 40.73 4.73
4793 4910 5.543790 TGGCATCCAATTCTAGCAGTATAGA 59.456 40.000 0.00 0.00 0.00 1.98
4794 4911 5.641209 GTGGCATCCAATTCTAGCAGTATAG 59.359 44.000 0.00 0.00 34.18 1.31
4804 4921 0.552848 ATCCGGTGGCATCCAATTCT 59.447 50.000 0.00 0.00 34.18 2.40
4819 4936 5.336372 GGAGAGACTTATTCCAGATCATCCG 60.336 48.000 0.00 0.00 0.00 4.18
4836 4958 2.725008 CGATGAGGCCGGAGAGAC 59.275 66.667 5.05 0.00 0.00 3.36
4843 4965 4.147449 TCAGGTGCGATGAGGCCG 62.147 66.667 0.00 0.00 0.00 6.13
4863 4986 1.986378 CACTAGTGTTAGAGCGCACAC 59.014 52.381 18.13 18.13 43.17 3.82
4873 4996 2.605257 ACAGCACCCTCACTAGTGTTA 58.395 47.619 21.99 3.39 36.35 2.41
4880 5003 3.986054 TGGAACAGCACCCTCACT 58.014 55.556 0.00 0.00 0.00 3.41
4898 5032 0.535335 TAACACGCTGTCCAGATCCC 59.465 55.000 0.00 0.00 0.00 3.85
4929 5063 3.779759 AGACAACGATCAGATGAGCTTC 58.220 45.455 0.00 0.00 0.00 3.86
4930 5064 3.883830 AGACAACGATCAGATGAGCTT 57.116 42.857 0.00 0.00 0.00 3.74
4936 5070 7.613411 TGGATCTCATATAGACAACGATCAGAT 59.387 37.037 0.00 0.00 36.93 2.90
4938 5072 7.120432 TCTGGATCTCATATAGACAACGATCAG 59.880 40.741 0.00 0.00 36.93 2.90
4939 5073 6.942576 TCTGGATCTCATATAGACAACGATCA 59.057 38.462 0.00 0.00 36.93 2.92
4940 5074 7.094592 TGTCTGGATCTCATATAGACAACGATC 60.095 40.741 0.00 0.00 43.20 3.69
4942 5076 6.062095 TGTCTGGATCTCATATAGACAACGA 58.938 40.000 0.00 0.00 43.20 3.85
4946 5080 7.506938 TCATGTTGTCTGGATCTCATATAGACA 59.493 37.037 0.00 0.00 44.12 3.41
4947 5081 7.890515 TCATGTTGTCTGGATCTCATATAGAC 58.109 38.462 0.00 0.00 36.93 2.59
4949 5083 7.321908 CCTCATGTTGTCTGGATCTCATATAG 58.678 42.308 0.00 0.00 0.00 1.31
4951 5085 5.512749 GCCTCATGTTGTCTGGATCTCATAT 60.513 44.000 0.00 0.00 0.00 1.78
4960 5094 1.522668 TTTCGCCTCATGTTGTCTGG 58.477 50.000 0.00 0.00 0.00 3.86
4961 5095 3.300009 GTTTTTCGCCTCATGTTGTCTG 58.700 45.455 0.00 0.00 0.00 3.51
5020 5154 6.437477 ACCAAAGGACTCCATAGGAATTTTTC 59.563 38.462 0.00 0.00 0.00 2.29
5021 5155 6.322931 ACCAAAGGACTCCATAGGAATTTTT 58.677 36.000 0.00 0.00 0.00 1.94
5022 5156 5.903923 ACCAAAGGACTCCATAGGAATTTT 58.096 37.500 0.00 0.00 0.00 1.82
5023 5157 5.536497 ACCAAAGGACTCCATAGGAATTT 57.464 39.130 0.00 0.00 0.00 1.82
5024 5158 5.536497 AACCAAAGGACTCCATAGGAATT 57.464 39.130 0.00 0.00 0.00 2.17
5025 5159 5.222337 ACAAACCAAAGGACTCCATAGGAAT 60.222 40.000 0.00 0.00 0.00 3.01
5026 5160 4.105697 ACAAACCAAAGGACTCCATAGGAA 59.894 41.667 0.00 0.00 0.00 3.36
5027 5161 3.655777 ACAAACCAAAGGACTCCATAGGA 59.344 43.478 0.00 0.00 0.00 2.94
5028 5162 4.034285 ACAAACCAAAGGACTCCATAGG 57.966 45.455 0.00 0.00 0.00 2.57
5029 5163 5.045869 TCCTACAAACCAAAGGACTCCATAG 60.046 44.000 0.00 0.00 34.46 2.23
5030 5164 4.847512 TCCTACAAACCAAAGGACTCCATA 59.152 41.667 0.00 0.00 34.46 2.74
5031 5165 3.655777 TCCTACAAACCAAAGGACTCCAT 59.344 43.478 0.00 0.00 34.46 3.41
5032 5166 3.050089 TCCTACAAACCAAAGGACTCCA 58.950 45.455 0.00 0.00 34.46 3.86
5033 5167 3.782656 TCCTACAAACCAAAGGACTCC 57.217 47.619 0.00 0.00 34.46 3.85
5034 5168 4.459337 CCATTCCTACAAACCAAAGGACTC 59.541 45.833 0.00 0.00 39.13 3.36
5035 5169 4.105697 TCCATTCCTACAAACCAAAGGACT 59.894 41.667 0.00 0.00 39.13 3.85
5036 5170 4.403734 TCCATTCCTACAAACCAAAGGAC 58.596 43.478 0.00 0.00 39.13 3.85
5037 5171 4.733077 TCCATTCCTACAAACCAAAGGA 57.267 40.909 0.00 0.00 37.64 3.36
5038 5172 5.965922 GAATCCATTCCTACAAACCAAAGG 58.034 41.667 0.00 0.00 0.00 3.11
5067 5201 7.986553 AGGATTGGATCTTATCCTACATAGG 57.013 40.000 20.67 0.00 46.82 2.57
5081 5215 9.371136 GGAATTTTTACTTTGAAGGATTGGATC 57.629 33.333 0.00 0.00 0.00 3.36
5082 5216 9.104713 AGGAATTTTTACTTTGAAGGATTGGAT 57.895 29.630 0.00 0.00 0.00 3.41
5083 5217 8.491045 AGGAATTTTTACTTTGAAGGATTGGA 57.509 30.769 0.00 0.00 0.00 3.53
5087 5221 9.997172 AGGATAGGAATTTTTACTTTGAAGGAT 57.003 29.630 0.00 0.00 0.00 3.24
5092 5226 9.693739 TGCATAGGATAGGAATTTTTACTTTGA 57.306 29.630 0.00 0.00 0.00 2.69
5095 5229 9.866655 TGATGCATAGGATAGGAATTTTTACTT 57.133 29.630 0.00 0.00 0.00 2.24
5096 5230 9.866655 TTGATGCATAGGATAGGAATTTTTACT 57.133 29.630 0.00 0.00 0.00 2.24
5099 5233 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
5100 5234 8.591072 CCATTTGATGCATAGGATAGGAATTTT 58.409 33.333 0.00 0.00 0.00 1.82
5101 5235 7.310237 GCCATTTGATGCATAGGATAGGAATTT 60.310 37.037 0.00 0.00 0.00 1.82
5102 5236 6.154021 GCCATTTGATGCATAGGATAGGAATT 59.846 38.462 0.00 0.00 0.00 2.17
5103 5237 5.655532 GCCATTTGATGCATAGGATAGGAAT 59.344 40.000 0.00 0.00 0.00 3.01
5104 5238 5.012239 GCCATTTGATGCATAGGATAGGAA 58.988 41.667 0.00 0.00 0.00 3.36
5105 5239 4.043184 TGCCATTTGATGCATAGGATAGGA 59.957 41.667 0.00 0.00 31.31 2.94
5106 5240 4.338012 TGCCATTTGATGCATAGGATAGG 58.662 43.478 0.00 0.00 31.31 2.57
5115 5249 4.021229 AGAAAGAGATGCCATTTGATGCA 58.979 39.130 0.00 0.00 42.52 3.96
5116 5250 4.650754 AGAAAGAGATGCCATTTGATGC 57.349 40.909 0.00 0.00 0.00 3.91
5117 5251 9.894783 CTATAAAGAAAGAGATGCCATTTGATG 57.105 33.333 0.00 0.00 0.00 3.07
5118 5252 9.857656 TCTATAAAGAAAGAGATGCCATTTGAT 57.142 29.630 0.00 0.00 0.00 2.57
5119 5253 9.685276 TTCTATAAAGAAAGAGATGCCATTTGA 57.315 29.630 0.00 0.00 38.81 2.69
5135 5269 9.617523 TGACATGCATCTCAATTTCTATAAAGA 57.382 29.630 1.73 0.00 0.00 2.52
5152 5286 7.512130 TGTAAGAATAGGAAGATGACATGCAT 58.488 34.615 0.00 0.00 40.77 3.96
5153 5287 6.888105 TGTAAGAATAGGAAGATGACATGCA 58.112 36.000 0.00 0.00 0.00 3.96
5154 5288 7.792374 TTGTAAGAATAGGAAGATGACATGC 57.208 36.000 0.00 0.00 0.00 4.06
5181 5315 7.227156 GCCTTCTTTGATTCATAGGATAGGAA 58.773 38.462 16.86 3.21 46.07 3.36
5182 5316 6.240002 GGCCTTCTTTGATTCATAGGATAGGA 60.240 42.308 16.86 0.00 0.00 2.94
5183 5317 5.942826 GGCCTTCTTTGATTCATAGGATAGG 59.057 44.000 0.00 9.21 0.00 2.57
5184 5318 6.777782 AGGCCTTCTTTGATTCATAGGATAG 58.222 40.000 0.00 1.43 0.00 2.08
5185 5319 6.770286 AGGCCTTCTTTGATTCATAGGATA 57.230 37.500 0.00 0.00 0.00 2.59
5186 5320 5.659849 AGGCCTTCTTTGATTCATAGGAT 57.340 39.130 0.00 0.00 0.00 3.24
5187 5321 6.575244 TTAGGCCTTCTTTGATTCATAGGA 57.425 37.500 12.58 0.00 0.00 2.94
5188 5322 7.286316 ACATTTAGGCCTTCTTTGATTCATAGG 59.714 37.037 12.58 3.22 0.00 2.57
5189 5323 8.230472 ACATTTAGGCCTTCTTTGATTCATAG 57.770 34.615 12.58 0.00 0.00 2.23
5190 5324 8.055181 AGACATTTAGGCCTTCTTTGATTCATA 58.945 33.333 12.58 0.00 0.00 2.15
5191 5325 6.894103 AGACATTTAGGCCTTCTTTGATTCAT 59.106 34.615 12.58 0.00 0.00 2.57
5192 5326 6.248433 AGACATTTAGGCCTTCTTTGATTCA 58.752 36.000 12.58 0.00 0.00 2.57
5193 5327 6.765915 AGACATTTAGGCCTTCTTTGATTC 57.234 37.500 12.58 0.00 0.00 2.52
5194 5328 8.650143 TTTAGACATTTAGGCCTTCTTTGATT 57.350 30.769 12.58 1.41 0.00 2.57
5195 5329 8.689972 CATTTAGACATTTAGGCCTTCTTTGAT 58.310 33.333 12.58 0.00 0.00 2.57
5196 5330 7.669722 ACATTTAGACATTTAGGCCTTCTTTGA 59.330 33.333 12.58 0.00 0.00 2.69
5197 5331 7.756722 CACATTTAGACATTTAGGCCTTCTTTG 59.243 37.037 12.58 6.86 0.00 2.77
5198 5332 7.093771 CCACATTTAGACATTTAGGCCTTCTTT 60.094 37.037 12.58 0.00 0.00 2.52
5199 5333 6.378280 CCACATTTAGACATTTAGGCCTTCTT 59.622 38.462 12.58 0.00 0.00 2.52
5200 5334 5.888161 CCACATTTAGACATTTAGGCCTTCT 59.112 40.000 12.58 10.27 0.00 2.85
5201 5335 5.885912 TCCACATTTAGACATTTAGGCCTTC 59.114 40.000 12.58 0.62 0.00 3.46
5202 5336 5.652452 GTCCACATTTAGACATTTAGGCCTT 59.348 40.000 12.58 0.00 33.08 4.35
5203 5337 5.193679 GTCCACATTTAGACATTTAGGCCT 58.806 41.667 11.78 11.78 33.08 5.19
5204 5338 4.947388 TGTCCACATTTAGACATTTAGGCC 59.053 41.667 0.00 0.00 38.07 5.19
5205 5339 6.509418 TTGTCCACATTTAGACATTTAGGC 57.491 37.500 0.00 0.00 42.32 3.93
5206 5340 7.279981 TCGATTGTCCACATTTAGACATTTAGG 59.720 37.037 0.00 0.00 42.32 2.69
5207 5341 8.196802 TCGATTGTCCACATTTAGACATTTAG 57.803 34.615 0.00 0.00 42.32 1.85
5208 5342 8.731275 ATCGATTGTCCACATTTAGACATTTA 57.269 30.769 0.00 0.00 42.32 1.40
5209 5343 7.630242 ATCGATTGTCCACATTTAGACATTT 57.370 32.000 0.00 0.00 42.32 2.32
5210 5344 7.768582 TGTATCGATTGTCCACATTTAGACATT 59.231 33.333 1.71 0.00 42.32 2.71
5211 5345 7.224753 GTGTATCGATTGTCCACATTTAGACAT 59.775 37.037 1.71 0.00 42.32 3.06
5212 5346 6.533723 GTGTATCGATTGTCCACATTTAGACA 59.466 38.462 1.71 0.00 41.13 3.41
5213 5347 6.757010 AGTGTATCGATTGTCCACATTTAGAC 59.243 38.462 1.71 0.00 0.00 2.59
5214 5348 6.873997 AGTGTATCGATTGTCCACATTTAGA 58.126 36.000 1.71 0.00 0.00 2.10
5215 5349 8.703336 CATAGTGTATCGATTGTCCACATTTAG 58.297 37.037 1.71 0.00 0.00 1.85
5216 5350 7.170828 GCATAGTGTATCGATTGTCCACATTTA 59.829 37.037 1.71 0.00 0.00 1.40
5217 5351 6.017934 GCATAGTGTATCGATTGTCCACATTT 60.018 38.462 1.71 0.00 0.00 2.32
5218 5352 5.466728 GCATAGTGTATCGATTGTCCACATT 59.533 40.000 1.71 0.59 0.00 2.71
5219 5353 4.991056 GCATAGTGTATCGATTGTCCACAT 59.009 41.667 1.71 1.05 0.00 3.21
5220 5354 4.142049 TGCATAGTGTATCGATTGTCCACA 60.142 41.667 1.71 0.00 0.00 4.17
5221 5355 4.368315 TGCATAGTGTATCGATTGTCCAC 58.632 43.478 1.71 6.18 0.00 4.02
5222 5356 4.664150 TGCATAGTGTATCGATTGTCCA 57.336 40.909 1.71 0.00 0.00 4.02
5223 5357 5.984233 TTTGCATAGTGTATCGATTGTCC 57.016 39.130 1.71 0.00 0.00 4.02
5224 5358 6.948353 ACATTTGCATAGTGTATCGATTGTC 58.052 36.000 1.71 0.00 0.00 3.18
5225 5359 6.538381 TGACATTTGCATAGTGTATCGATTGT 59.462 34.615 1.71 0.00 0.00 2.71
5226 5360 6.947258 TGACATTTGCATAGTGTATCGATTG 58.053 36.000 1.71 0.00 0.00 2.67
5227 5361 6.293081 GCTGACATTTGCATAGTGTATCGATT 60.293 38.462 1.71 0.00 0.00 3.34
5228 5362 5.178252 GCTGACATTTGCATAGTGTATCGAT 59.822 40.000 2.16 2.16 0.00 3.59
5229 5363 4.507756 GCTGACATTTGCATAGTGTATCGA 59.492 41.667 0.00 0.00 0.00 3.59
5230 5364 4.270808 TGCTGACATTTGCATAGTGTATCG 59.729 41.667 0.00 0.00 33.94 2.92
5231 5365 5.065090 TGTGCTGACATTTGCATAGTGTATC 59.935 40.000 0.00 0.00 41.45 2.24
5232 5366 4.943093 TGTGCTGACATTTGCATAGTGTAT 59.057 37.500 0.00 0.00 41.45 2.29
5233 5367 4.322567 TGTGCTGACATTTGCATAGTGTA 58.677 39.130 0.00 0.00 41.45 2.90
5234 5368 3.148412 TGTGCTGACATTTGCATAGTGT 58.852 40.909 0.00 0.00 41.45 3.55
5235 5369 3.835378 TGTGCTGACATTTGCATAGTG 57.165 42.857 0.00 0.00 41.45 2.74
5236 5370 3.366679 GCTTGTGCTGACATTTGCATAGT 60.367 43.478 0.00 0.00 41.45 2.12
5237 5371 3.176708 GCTTGTGCTGACATTTGCATAG 58.823 45.455 0.00 0.00 41.45 2.23
5238 5372 2.557490 TGCTTGTGCTGACATTTGCATA 59.443 40.909 0.00 0.00 41.45 3.14
5239 5373 1.341852 TGCTTGTGCTGACATTTGCAT 59.658 42.857 0.00 0.00 41.45 3.96
5240 5374 0.745468 TGCTTGTGCTGACATTTGCA 59.255 45.000 0.00 0.00 40.48 4.08
5241 5375 1.134226 GTGCTTGTGCTGACATTTGC 58.866 50.000 0.00 0.00 40.48 3.68
5242 5376 2.495409 TGTGCTTGTGCTGACATTTG 57.505 45.000 0.00 0.00 40.48 2.32
5243 5377 3.319972 AGATTGTGCTTGTGCTGACATTT 59.680 39.130 0.00 0.00 40.48 2.32
5244 5378 2.889045 AGATTGTGCTTGTGCTGACATT 59.111 40.909 0.00 0.00 40.48 2.71
5245 5379 2.228103 CAGATTGTGCTTGTGCTGACAT 59.772 45.455 0.00 0.00 40.48 3.06
5246 5380 1.605232 CAGATTGTGCTTGTGCTGACA 59.395 47.619 0.00 0.00 40.48 3.58
5247 5381 1.605710 ACAGATTGTGCTTGTGCTGAC 59.394 47.619 0.00 0.00 40.48 3.51
5248 5382 1.605232 CACAGATTGTGCTTGTGCTGA 59.395 47.619 0.00 0.00 41.89 4.26
5249 5383 2.046283 CACAGATTGTGCTTGTGCTG 57.954 50.000 0.00 0.00 41.89 4.41
5259 5393 0.951558 GCCGGTTTGTCACAGATTGT 59.048 50.000 1.90 0.00 0.00 2.71
5260 5394 0.240945 GGCCGGTTTGTCACAGATTG 59.759 55.000 1.90 0.00 0.00 2.67
5261 5395 0.179004 TGGCCGGTTTGTCACAGATT 60.179 50.000 1.90 0.00 0.00 2.40
5262 5396 0.038166 ATGGCCGGTTTGTCACAGAT 59.962 50.000 1.90 0.00 0.00 2.90
5263 5397 0.179004 AATGGCCGGTTTGTCACAGA 60.179 50.000 1.90 0.00 0.00 3.41
5264 5398 0.673437 AAATGGCCGGTTTGTCACAG 59.327 50.000 1.90 0.00 0.00 3.66
5265 5399 0.671251 GAAATGGCCGGTTTGTCACA 59.329 50.000 10.33 0.00 0.00 3.58
5266 5400 0.386731 CGAAATGGCCGGTTTGTCAC 60.387 55.000 10.33 0.00 0.00 3.67
5267 5401 1.953017 CGAAATGGCCGGTTTGTCA 59.047 52.632 10.33 0.00 0.00 3.58
5268 5402 1.443702 GCGAAATGGCCGGTTTGTC 60.444 57.895 10.33 0.00 0.00 3.18
5269 5403 2.141122 CTGCGAAATGGCCGGTTTGT 62.141 55.000 10.33 0.00 0.00 2.83
5270 5404 1.444212 CTGCGAAATGGCCGGTTTG 60.444 57.895 10.33 5.95 0.00 2.93
5271 5405 2.635443 CCTGCGAAATGGCCGGTTT 61.635 57.895 1.90 5.69 33.17 3.27
5272 5406 3.061848 CCTGCGAAATGGCCGGTT 61.062 61.111 1.90 0.00 33.17 4.44
5276 5410 3.830192 CTGCCCTGCGAAATGGCC 61.830 66.667 0.00 0.00 44.72 5.36
5277 5411 2.751436 TCTGCCCTGCGAAATGGC 60.751 61.111 0.00 0.00 45.56 4.40
5278 5412 2.753966 CGTCTGCCCTGCGAAATGG 61.754 63.158 0.00 0.00 0.00 3.16
5279 5413 2.753966 CCGTCTGCCCTGCGAAATG 61.754 63.158 0.00 0.00 0.00 2.32
5280 5414 2.436646 CCGTCTGCCCTGCGAAAT 60.437 61.111 0.00 0.00 0.00 2.17
5281 5415 4.697756 CCCGTCTGCCCTGCGAAA 62.698 66.667 0.00 0.00 0.00 3.46
5286 5420 4.641645 TTGCACCCGTCTGCCCTG 62.642 66.667 0.00 0.00 36.21 4.45
5287 5421 3.850098 CTTTGCACCCGTCTGCCCT 62.850 63.158 0.00 0.00 36.21 5.19
5288 5422 3.365265 CTTTGCACCCGTCTGCCC 61.365 66.667 0.00 0.00 36.21 5.36
5289 5423 2.281484 TCTTTGCACCCGTCTGCC 60.281 61.111 0.00 0.00 36.21 4.85
5290 5424 1.598130 AGTCTTTGCACCCGTCTGC 60.598 57.895 0.00 0.00 37.70 4.26
5291 5425 2.238353 CAGTCTTTGCACCCGTCTG 58.762 57.895 0.00 0.00 0.00 3.51
5292 5426 4.779475 CAGTCTTTGCACCCGTCT 57.221 55.556 0.00 0.00 0.00 4.18
5308 5442 2.281414 TGCCGCTGCTACTTTGCA 60.281 55.556 0.70 0.00 41.05 4.08
5309 5443 1.372087 ATCTGCCGCTGCTACTTTGC 61.372 55.000 0.70 0.00 38.71 3.68
5310 5444 0.654683 GATCTGCCGCTGCTACTTTG 59.345 55.000 0.70 0.00 38.71 2.77
5311 5445 0.250234 TGATCTGCCGCTGCTACTTT 59.750 50.000 0.70 0.00 38.71 2.66
5312 5446 0.250234 TTGATCTGCCGCTGCTACTT 59.750 50.000 0.70 0.00 38.71 2.24
5313 5447 0.250234 TTTGATCTGCCGCTGCTACT 59.750 50.000 0.70 0.00 38.71 2.57
5314 5448 1.003116 CATTTGATCTGCCGCTGCTAC 60.003 52.381 0.70 0.00 38.71 3.58
5315 5449 1.302366 CATTTGATCTGCCGCTGCTA 58.698 50.000 0.70 0.00 38.71 3.49
5316 5450 1.381928 CCATTTGATCTGCCGCTGCT 61.382 55.000 0.70 0.00 38.71 4.24
5317 5451 1.065273 CCATTTGATCTGCCGCTGC 59.935 57.895 0.00 0.00 38.26 5.25
5318 5452 0.099968 CACCATTTGATCTGCCGCTG 59.900 55.000 0.00 0.00 0.00 5.18
5319 5453 1.660560 GCACCATTTGATCTGCCGCT 61.661 55.000 0.00 0.00 0.00 5.52
5320 5454 1.226773 GCACCATTTGATCTGCCGC 60.227 57.895 0.00 0.00 0.00 6.53
5321 5455 0.379669 GAGCACCATTTGATCTGCCG 59.620 55.000 0.00 0.00 37.67 5.69
5322 5456 0.379669 CGAGCACCATTTGATCTGCC 59.620 55.000 0.00 0.00 38.59 4.85
5323 5457 0.248377 GCGAGCACCATTTGATCTGC 60.248 55.000 0.00 0.00 38.59 4.26
5324 5458 1.329906 GAGCGAGCACCATTTGATCTG 59.670 52.381 0.00 0.00 38.59 2.90
5325 5459 1.065926 TGAGCGAGCACCATTTGATCT 60.066 47.619 0.00 0.00 38.59 2.75
5326 5460 1.372582 TGAGCGAGCACCATTTGATC 58.627 50.000 0.00 0.00 37.27 2.92
5327 5461 3.556817 TGAGCGAGCACCATTTGAT 57.443 47.368 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.