Multiple sequence alignment - TraesCS3D01G185900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G185900 chr3D 100.000 3720 0 0 1 3720 171150034 171153753 0.000000e+00 6870.0
1 TraesCS3D01G185900 chr3A 92.696 2300 101 16 568 2827 208735231 208737503 0.000000e+00 3254.0
2 TraesCS3D01G185900 chr3A 89.135 497 29 11 2824 3310 208737533 208738014 2.470000e-166 595.0
3 TraesCS3D01G185900 chr3A 95.385 260 8 1 270 525 208734856 208735115 9.620000e-111 411.0
4 TraesCS3D01G185900 chr3A 89.062 128 10 4 3337 3464 208743110 208743233 4.970000e-34 156.0
5 TraesCS3D01G185900 chr3B 92.329 2164 105 18 687 2827 250144315 250146440 0.000000e+00 3020.0
6 TraesCS3D01G185900 chr3B 90.192 520 26 7 2824 3327 250146470 250146980 0.000000e+00 654.0
7 TraesCS3D01G185900 chr3B 86.267 517 36 12 20 526 250142028 250142519 2.540000e-146 529.0
8 TraesCS3D01G185900 chr1B 93.806 1340 74 2 1298 2634 332154924 332156257 0.000000e+00 2006.0
9 TraesCS3D01G185900 chr1B 91.872 1378 79 6 1252 2624 390429469 390430818 0.000000e+00 1893.0
10 TraesCS3D01G185900 chr1B 88.538 253 24 4 3469 3720 659525958 659526206 6.040000e-78 302.0
11 TraesCS3D01G185900 chr1B 87.097 62 8 0 2157 2218 536571644 536571583 1.850000e-08 71.3
12 TraesCS3D01G185900 chr6B 95.407 675 28 1 1963 2634 631947878 631947204 0.000000e+00 1072.0
13 TraesCS3D01G185900 chr6B 92.504 707 46 5 1252 1956 631948633 631947932 0.000000e+00 1005.0
14 TraesCS3D01G185900 chr6B 88.538 253 25 2 3469 3720 206023161 206023410 1.680000e-78 303.0
15 TraesCS3D01G185900 chr7D 90.476 252 21 1 3469 3720 231253220 231253468 2.770000e-86 329.0
16 TraesCS3D01G185900 chr7D 89.020 255 25 2 3463 3717 231245978 231246229 2.790000e-81 313.0
17 TraesCS3D01G185900 chr5B 90.476 252 20 2 3469 3720 335939014 335939261 2.770000e-86 329.0
18 TraesCS3D01G185900 chrUn 89.286 252 24 1 3469 3720 41811480 41811728 2.790000e-81 313.0
19 TraesCS3D01G185900 chr6A 88.583 254 25 4 3469 3720 572024485 572024736 4.670000e-79 305.0
20 TraesCS3D01G185900 chr6D 88.538 253 24 4 3469 3720 411719618 411719370 6.040000e-78 302.0
21 TraesCS3D01G185900 chr2D 88.492 252 26 1 3469 3720 106616156 106616404 6.040000e-78 302.0
22 TraesCS3D01G185900 chr2D 87.931 58 3 3 3271 3327 361241039 361240985 8.620000e-07 65.8
23 TraesCS3D01G185900 chr1D 87.097 62 8 0 2157 2218 399809845 399809784 1.850000e-08 71.3
24 TraesCS3D01G185900 chr7B 86.207 58 3 5 3270 3325 14788905 14788959 1.440000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G185900 chr3D 171150034 171153753 3719 False 6870.0 6870 100.000000 1 3720 1 chr3D.!!$F1 3719
1 TraesCS3D01G185900 chr3A 208734856 208738014 3158 False 1420.0 3254 92.405333 270 3310 3 chr3A.!!$F2 3040
2 TraesCS3D01G185900 chr3B 250142028 250146980 4952 False 1401.0 3020 89.596000 20 3327 3 chr3B.!!$F1 3307
3 TraesCS3D01G185900 chr1B 332154924 332156257 1333 False 2006.0 2006 93.806000 1298 2634 1 chr1B.!!$F1 1336
4 TraesCS3D01G185900 chr1B 390429469 390430818 1349 False 1893.0 1893 91.872000 1252 2624 1 chr1B.!!$F2 1372
5 TraesCS3D01G185900 chr6B 631947204 631948633 1429 True 1038.5 1072 93.955500 1252 2634 2 chr6B.!!$R1 1382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 241 0.103572 GTGGGGCATGCATCACAATC 59.896 55.0 26.97 7.57 0.00 2.67 F
235 244 0.248743 GGGCATGCATCACAATCGTG 60.249 55.0 21.36 0.00 45.08 4.35 F
977 2665 0.254747 CGCCCCTACAAATTCCTCCA 59.745 55.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 3488 1.522580 GAATCCGCCAGAGCTCACC 60.523 63.158 17.77 2.25 36.60 4.02 R
1848 3537 2.507992 GACGACGCTGCTGCTGAT 60.508 61.111 14.03 0.00 36.97 2.90 R
2922 4728 0.036010 AAACTCGCCTCCACTCCATG 60.036 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.125417 TGCTTGCTCTAAAGTTTGAAACACT 59.875 36.000 11.02 0.00 0.00 3.55
43 44 2.837591 AGTTTGAAACACTGGGCCTTTT 59.162 40.909 11.02 0.00 0.00 2.27
51 52 2.304470 ACACTGGGCCTTTTGTTTGTTT 59.696 40.909 4.53 0.00 0.00 2.83
61 62 6.149640 GGCCTTTTGTTTGTTTACTTTTTGGA 59.850 34.615 0.00 0.00 0.00 3.53
69 70 8.536175 TGTTTGTTTACTTTTTGGAGGATTTCT 58.464 29.630 0.00 0.00 0.00 2.52
70 71 9.378551 GTTTGTTTACTTTTTGGAGGATTTCTT 57.621 29.630 0.00 0.00 0.00 2.52
82 83 9.762933 TTTGGAGGATTTCTTTAGATGTTTTTG 57.237 29.630 0.00 0.00 0.00 2.44
83 84 7.895759 TGGAGGATTTCTTTAGATGTTTTTGG 58.104 34.615 0.00 0.00 0.00 3.28
119 127 7.824289 TCATTTCTTTCACAGGAAGGTATGTAG 59.176 37.037 0.00 0.00 33.82 2.74
123 131 6.380274 TCTTTCACAGGAAGGTATGTAGGTAG 59.620 42.308 0.00 0.00 33.82 3.18
155 163 3.305398 GGAGTGTGTCCATATCGATCC 57.695 52.381 0.00 0.00 46.10 3.36
163 171 5.542251 TGTGTCCATATCGATCCAATTCCTA 59.458 40.000 0.00 0.00 0.00 2.94
164 172 6.042666 TGTGTCCATATCGATCCAATTCCTAA 59.957 38.462 0.00 0.00 0.00 2.69
173 181 4.449068 CGATCCAATTCCTAAGGATTCGTG 59.551 45.833 0.00 0.00 42.03 4.35
179 187 4.764050 TTCCTAAGGATTCGTGCCATTA 57.236 40.909 0.00 0.00 0.00 1.90
189 197 1.801771 TCGTGCCATTAAGTGAAACCG 59.198 47.619 0.00 0.00 37.80 4.44
198 207 5.127031 CCATTAAGTGAAACCGGATGGAAAT 59.873 40.000 9.46 0.00 40.26 2.17
202 211 2.165641 GTGAAACCGGATGGAAATTCCC 59.834 50.000 9.46 0.00 39.21 3.97
205 214 2.143876 ACCGGATGGAAATTCCCAAG 57.856 50.000 9.46 0.00 40.04 3.61
206 215 1.341976 ACCGGATGGAAATTCCCAAGG 60.342 52.381 9.46 9.98 40.04 3.61
219 228 4.344237 CAAGGATTGGAGTGGGGC 57.656 61.111 0.00 0.00 43.94 5.80
220 229 1.383799 CAAGGATTGGAGTGGGGCA 59.616 57.895 0.00 0.00 43.94 5.36
224 233 1.380246 GATTGGAGTGGGGCATGCA 60.380 57.895 21.36 0.00 0.00 3.96
226 235 0.757935 ATTGGAGTGGGGCATGCATC 60.758 55.000 21.36 11.24 0.00 3.91
227 236 2.152602 TTGGAGTGGGGCATGCATCA 62.153 55.000 21.36 13.90 0.00 3.07
232 241 0.103572 GTGGGGCATGCATCACAATC 59.896 55.000 26.97 7.57 0.00 2.67
233 242 1.361271 GGGGCATGCATCACAATCG 59.639 57.895 21.36 0.00 0.00 3.34
234 243 1.386525 GGGGCATGCATCACAATCGT 61.387 55.000 21.36 0.00 0.00 3.73
235 244 0.248743 GGGCATGCATCACAATCGTG 60.249 55.000 21.36 0.00 45.08 4.35
245 254 2.036556 CACAATCGTGACCAGTTTGC 57.963 50.000 0.00 0.00 46.80 3.68
246 255 0.951558 ACAATCGTGACCAGTTTGCC 59.048 50.000 0.00 0.00 0.00 4.52
247 256 1.238439 CAATCGTGACCAGTTTGCCT 58.762 50.000 0.00 0.00 0.00 4.75
248 257 2.224426 ACAATCGTGACCAGTTTGCCTA 60.224 45.455 0.00 0.00 0.00 3.93
249 258 2.094762 ATCGTGACCAGTTTGCCTAC 57.905 50.000 0.00 0.00 0.00 3.18
315 326 5.152623 AGTGGATGGTATATTGTCATCGG 57.847 43.478 0.00 0.00 38.43 4.18
526 541 0.533491 ATGCATTGCACTTGGCGATT 59.467 45.000 14.66 0.00 44.51 3.34
527 542 0.388778 TGCATTGCACTTGGCGATTG 60.389 50.000 7.38 0.00 44.51 2.67
528 543 1.689352 GCATTGCACTTGGCGATTGC 61.689 55.000 9.96 9.96 44.51 3.56
529 544 0.388778 CATTGCACTTGGCGATTGCA 60.389 50.000 15.07 15.07 44.51 4.08
531 546 0.317799 TTGCACTTGGCGATTGCAAT 59.682 45.000 23.85 12.83 45.48 3.56
532 547 1.669502 TTGCACTTGGCGATTGCAATC 60.670 47.619 26.42 26.42 45.48 2.67
543 603 1.201414 GATTGCAATCGTTTCGGGGTT 59.799 47.619 22.90 0.00 0.00 4.11
554 615 1.030488 TTCGGGGTTTGTTCGTGCAA 61.030 50.000 0.00 0.00 0.00 4.08
581 669 1.079543 CAACCACGCTCCCAGAGAG 60.080 63.158 0.00 0.00 46.29 3.20
590 678 2.183679 GCTCCCAGAGAGAAGGAAGAA 58.816 52.381 0.00 0.00 46.50 2.52
614 1957 1.590932 CAGAATTGGGCGATCAGAGG 58.409 55.000 0.00 0.00 0.00 3.69
657 2005 1.332552 GCGCGAAAACGAAAAGACTGA 60.333 47.619 12.10 0.00 34.06 3.41
977 2665 0.254747 CGCCCCTACAAATTCCTCCA 59.745 55.000 0.00 0.00 0.00 3.86
989 2677 1.059584 TTCCTCCACTCAACCAGCCA 61.060 55.000 0.00 0.00 0.00 4.75
1038 2727 3.414700 CGAGTGACCCAAGCGTGC 61.415 66.667 0.00 0.00 0.00 5.34
1187 2876 1.226974 CGACATCTTCACGGCCGAT 60.227 57.895 35.90 12.06 0.00 4.18
1650 3339 2.442272 GGCTGCCTCCTCCGTCTA 60.442 66.667 12.43 0.00 0.00 2.59
1740 3429 1.756950 AACATCCTCGCTCCGGCTA 60.757 57.895 0.00 0.00 36.09 3.93
1763 3452 1.630126 ATCATGGGACCAGCGCTTCT 61.630 55.000 7.50 0.00 0.00 2.85
1766 3455 0.678048 ATGGGACCAGCGCTTCTTTC 60.678 55.000 7.50 0.87 0.00 2.62
1787 3476 4.517815 GCATTCCCGCCCGACGTA 62.518 66.667 0.00 0.00 41.42 3.57
1852 3541 2.124570 CCCGTCCAAGGCCATCAG 60.125 66.667 5.01 0.00 0.00 2.90
2130 3869 2.282674 ACGACCTGGAGTACGCCA 60.283 61.111 17.98 17.98 36.30 5.69
2829 4630 2.413371 GCACGCTTGATTGAGAAGGAAC 60.413 50.000 0.00 0.00 0.00 3.62
2926 4732 2.880879 CGTCGAGCGTGGACATGG 60.881 66.667 0.00 0.00 34.04 3.66
2927 4733 2.571757 GTCGAGCGTGGACATGGA 59.428 61.111 0.00 0.00 34.56 3.41
2971 4777 4.230603 GCCTGATGCTGCTGCTAA 57.769 55.556 17.00 0.00 40.48 3.09
3136 4951 1.890174 CGGATGAACCCCTTTTGGC 59.110 57.895 0.00 0.00 38.58 4.52
3140 4955 0.190815 ATGAACCCCTTTTGGCCTGT 59.809 50.000 3.32 0.00 38.58 4.00
3141 4956 0.854218 TGAACCCCTTTTGGCCTGTA 59.146 50.000 3.32 0.00 38.58 2.74
3172 4989 2.124403 GCAGGTGAGATGGGCCAG 60.124 66.667 13.78 0.00 0.00 4.85
3221 5039 4.232221 GCAGACAATGTGGTTGATGAAAG 58.768 43.478 0.00 0.00 40.37 2.62
3231 5049 2.096496 GGTTGATGAAAGAGTGCGGATG 59.904 50.000 0.00 0.00 0.00 3.51
3257 5075 1.459209 TCTTTAACTGACACATGCGCG 59.541 47.619 0.00 0.00 0.00 6.86
3268 5086 3.134127 ATGCGCGGGGAGCTTTTC 61.134 61.111 8.83 0.00 45.59 2.29
3327 5145 8.097038 TCAAGCAACATAGTTATCAAGAGTCTT 58.903 33.333 0.00 0.00 0.00 3.01
3328 5146 8.386606 CAAGCAACATAGTTATCAAGAGTCTTC 58.613 37.037 1.26 0.00 0.00 2.87
3329 5147 7.846066 AGCAACATAGTTATCAAGAGTCTTCT 58.154 34.615 1.26 0.00 34.29 2.85
3330 5148 7.978975 AGCAACATAGTTATCAAGAGTCTTCTC 59.021 37.037 1.26 0.00 40.70 2.87
3331 5149 7.223777 GCAACATAGTTATCAAGAGTCTTCTCC 59.776 40.741 1.26 0.00 41.26 3.71
3332 5150 7.354751 ACATAGTTATCAAGAGTCTTCTCCC 57.645 40.000 1.26 0.00 41.26 4.30
3333 5151 4.993029 AGTTATCAAGAGTCTTCTCCCG 57.007 45.455 1.26 0.00 41.26 5.14
3334 5152 3.131400 AGTTATCAAGAGTCTTCTCCCGC 59.869 47.826 1.26 0.00 41.26 6.13
3335 5153 1.561643 ATCAAGAGTCTTCTCCCGCA 58.438 50.000 1.26 0.00 41.26 5.69
3336 5154 1.338107 TCAAGAGTCTTCTCCCGCAA 58.662 50.000 1.26 0.00 41.26 4.85
3337 5155 1.691976 TCAAGAGTCTTCTCCCGCAAA 59.308 47.619 1.26 0.00 41.26 3.68
3338 5156 2.104111 TCAAGAGTCTTCTCCCGCAAAA 59.896 45.455 1.26 0.00 41.26 2.44
3339 5157 2.171341 AGAGTCTTCTCCCGCAAAAC 57.829 50.000 0.00 0.00 41.26 2.43
3340 5158 1.416401 AGAGTCTTCTCCCGCAAAACA 59.584 47.619 0.00 0.00 41.26 2.83
3341 5159 2.158813 AGAGTCTTCTCCCGCAAAACAA 60.159 45.455 0.00 0.00 41.26 2.83
3342 5160 2.616842 GAGTCTTCTCCCGCAAAACAAA 59.383 45.455 0.00 0.00 34.87 2.83
3343 5161 3.020984 AGTCTTCTCCCGCAAAACAAAA 58.979 40.909 0.00 0.00 0.00 2.44
3344 5162 3.445805 AGTCTTCTCCCGCAAAACAAAAA 59.554 39.130 0.00 0.00 0.00 1.94
3364 5182 6.944234 AAAAAGTTACCAAGAGTCTCCAAG 57.056 37.500 0.00 0.00 0.00 3.61
3365 5183 5.888982 AAAGTTACCAAGAGTCTCCAAGA 57.111 39.130 0.00 0.00 0.00 3.02
3366 5184 6.441088 AAAGTTACCAAGAGTCTCCAAGAT 57.559 37.500 0.00 0.00 0.00 2.40
3367 5185 7.554959 AAAGTTACCAAGAGTCTCCAAGATA 57.445 36.000 0.00 0.00 0.00 1.98
3368 5186 6.532988 AGTTACCAAGAGTCTCCAAGATAC 57.467 41.667 0.00 0.00 0.00 2.24
3369 5187 6.017192 AGTTACCAAGAGTCTCCAAGATACA 58.983 40.000 0.00 0.00 0.00 2.29
3370 5188 6.497259 AGTTACCAAGAGTCTCCAAGATACAA 59.503 38.462 0.00 0.00 0.00 2.41
3371 5189 7.181125 AGTTACCAAGAGTCTCCAAGATACAAT 59.819 37.037 0.00 0.00 0.00 2.71
3372 5190 8.475639 GTTACCAAGAGTCTCCAAGATACAATA 58.524 37.037 0.00 0.00 0.00 1.90
3373 5191 7.682787 ACCAAGAGTCTCCAAGATACAATAT 57.317 36.000 0.00 0.00 0.00 1.28
3374 5192 7.504403 ACCAAGAGTCTCCAAGATACAATATG 58.496 38.462 0.00 0.00 0.00 1.78
3375 5193 6.933521 CCAAGAGTCTCCAAGATACAATATGG 59.066 42.308 0.00 0.00 0.00 2.74
3376 5194 7.202038 CCAAGAGTCTCCAAGATACAATATGGA 60.202 40.741 0.00 0.00 39.57 3.41
3384 5202 8.547481 TCCAAGATACAATATGGAGTAGAACA 57.453 34.615 0.00 0.00 37.05 3.18
3385 5203 8.642432 TCCAAGATACAATATGGAGTAGAACAG 58.358 37.037 0.00 0.00 37.05 3.16
3386 5204 8.642432 CCAAGATACAATATGGAGTAGAACAGA 58.358 37.037 0.00 0.00 34.82 3.41
3392 5210 7.989826 ACAATATGGAGTAGAACAGAAAATGC 58.010 34.615 0.00 0.00 0.00 3.56
3393 5211 7.611467 ACAATATGGAGTAGAACAGAAAATGCA 59.389 33.333 0.00 0.00 0.00 3.96
3394 5212 8.461222 CAATATGGAGTAGAACAGAAAATGCAA 58.539 33.333 0.00 0.00 0.00 4.08
3395 5213 6.899393 ATGGAGTAGAACAGAAAATGCAAA 57.101 33.333 0.00 0.00 0.00 3.68
3396 5214 6.707440 TGGAGTAGAACAGAAAATGCAAAA 57.293 33.333 0.00 0.00 0.00 2.44
3397 5215 7.106439 TGGAGTAGAACAGAAAATGCAAAAA 57.894 32.000 0.00 0.00 0.00 1.94
3398 5216 6.978080 TGGAGTAGAACAGAAAATGCAAAAAC 59.022 34.615 0.00 0.00 0.00 2.43
3399 5217 6.420903 GGAGTAGAACAGAAAATGCAAAAACC 59.579 38.462 0.00 0.00 0.00 3.27
3400 5218 6.872920 AGTAGAACAGAAAATGCAAAAACCA 58.127 32.000 0.00 0.00 0.00 3.67
3401 5219 7.327214 AGTAGAACAGAAAATGCAAAAACCAA 58.673 30.769 0.00 0.00 0.00 3.67
3402 5220 7.986889 AGTAGAACAGAAAATGCAAAAACCAAT 59.013 29.630 0.00 0.00 0.00 3.16
3403 5221 9.255304 GTAGAACAGAAAATGCAAAAACCAATA 57.745 29.630 0.00 0.00 0.00 1.90
3404 5222 8.369218 AGAACAGAAAATGCAAAAACCAATAG 57.631 30.769 0.00 0.00 0.00 1.73
3405 5223 8.203485 AGAACAGAAAATGCAAAAACCAATAGA 58.797 29.630 0.00 0.00 0.00 1.98
3406 5224 7.951530 ACAGAAAATGCAAAAACCAATAGAG 57.048 32.000 0.00 0.00 0.00 2.43
3407 5225 7.500141 ACAGAAAATGCAAAAACCAATAGAGT 58.500 30.769 0.00 0.00 0.00 3.24
3408 5226 7.986889 ACAGAAAATGCAAAAACCAATAGAGTT 59.013 29.630 0.00 0.00 0.00 3.01
3409 5227 8.490355 CAGAAAATGCAAAAACCAATAGAGTTC 58.510 33.333 0.00 0.00 0.00 3.01
3410 5228 8.203485 AGAAAATGCAAAAACCAATAGAGTTCA 58.797 29.630 0.00 0.00 0.00 3.18
3411 5229 8.907222 AAAATGCAAAAACCAATAGAGTTCAT 57.093 26.923 0.00 0.00 0.00 2.57
3412 5230 9.995003 AAAATGCAAAAACCAATAGAGTTCATA 57.005 25.926 0.00 0.00 0.00 2.15
3413 5231 8.986477 AATGCAAAAACCAATAGAGTTCATAC 57.014 30.769 0.00 0.00 0.00 2.39
3414 5232 7.517614 TGCAAAAACCAATAGAGTTCATACA 57.482 32.000 0.00 0.00 0.00 2.29
3415 5233 7.946207 TGCAAAAACCAATAGAGTTCATACAA 58.054 30.769 0.00 0.00 0.00 2.41
3416 5234 8.081633 TGCAAAAACCAATAGAGTTCATACAAG 58.918 33.333 0.00 0.00 0.00 3.16
3417 5235 8.296713 GCAAAAACCAATAGAGTTCATACAAGA 58.703 33.333 0.00 0.00 0.00 3.02
3418 5236 9.612620 CAAAAACCAATAGAGTTCATACAAGAC 57.387 33.333 0.00 0.00 0.00 3.01
3419 5237 9.574516 AAAAACCAATAGAGTTCATACAAGACT 57.425 29.630 0.00 0.00 0.00 3.24
3420 5238 9.574516 AAAACCAATAGAGTTCATACAAGACTT 57.425 29.630 0.00 0.00 0.00 3.01
3422 5240 9.877178 AACCAATAGAGTTCATACAAGACTTAG 57.123 33.333 0.00 0.00 0.00 2.18
3423 5241 7.982354 ACCAATAGAGTTCATACAAGACTTAGC 59.018 37.037 0.00 0.00 0.00 3.09
3424 5242 7.981789 CCAATAGAGTTCATACAAGACTTAGCA 59.018 37.037 0.00 0.00 0.00 3.49
3425 5243 9.371136 CAATAGAGTTCATACAAGACTTAGCAA 57.629 33.333 0.00 0.00 0.00 3.91
3426 5244 9.593134 AATAGAGTTCATACAAGACTTAGCAAG 57.407 33.333 0.00 0.00 0.00 4.01
3427 5245 7.233389 AGAGTTCATACAAGACTTAGCAAGA 57.767 36.000 3.37 0.00 0.00 3.02
3428 5246 7.671302 AGAGTTCATACAAGACTTAGCAAGAA 58.329 34.615 3.37 0.00 0.00 2.52
3429 5247 8.317679 AGAGTTCATACAAGACTTAGCAAGAAT 58.682 33.333 3.37 0.00 0.00 2.40
3430 5248 9.587772 GAGTTCATACAAGACTTAGCAAGAATA 57.412 33.333 3.37 0.00 0.00 1.75
3434 5252 9.755804 TCATACAAGACTTAGCAAGAATATGAG 57.244 33.333 3.37 0.00 0.00 2.90
3435 5253 6.917217 ACAAGACTTAGCAAGAATATGAGC 57.083 37.500 3.37 0.00 0.00 4.26
3436 5254 6.648192 ACAAGACTTAGCAAGAATATGAGCT 58.352 36.000 0.00 0.00 40.92 4.09
3437 5255 6.538021 ACAAGACTTAGCAAGAATATGAGCTG 59.462 38.462 0.00 0.00 37.94 4.24
3438 5256 6.477053 AGACTTAGCAAGAATATGAGCTGA 57.523 37.500 0.00 0.00 37.94 4.26
3439 5257 6.882656 AGACTTAGCAAGAATATGAGCTGAA 58.117 36.000 0.00 0.00 37.94 3.02
3440 5258 7.334090 AGACTTAGCAAGAATATGAGCTGAAA 58.666 34.615 0.00 0.00 37.94 2.69
3441 5259 7.279758 AGACTTAGCAAGAATATGAGCTGAAAC 59.720 37.037 0.00 0.00 37.94 2.78
3442 5260 6.881065 ACTTAGCAAGAATATGAGCTGAAACA 59.119 34.615 0.00 0.00 37.94 2.83
3443 5261 7.555554 ACTTAGCAAGAATATGAGCTGAAACAT 59.444 33.333 0.00 0.00 37.94 2.71
3444 5262 6.770746 AGCAAGAATATGAGCTGAAACATT 57.229 33.333 0.00 0.00 35.72 2.71
3445 5263 7.870509 AGCAAGAATATGAGCTGAAACATTA 57.129 32.000 0.00 0.00 35.72 1.90
3446 5264 8.284945 AGCAAGAATATGAGCTGAAACATTAA 57.715 30.769 0.00 0.00 35.72 1.40
3447 5265 8.742777 AGCAAGAATATGAGCTGAAACATTAAA 58.257 29.630 0.00 0.00 35.72 1.52
3448 5266 8.801913 GCAAGAATATGAGCTGAAACATTAAAC 58.198 33.333 0.00 0.00 0.00 2.01
3451 5269 9.453572 AGAATATGAGCTGAAACATTAAACTGA 57.546 29.630 0.00 0.00 0.00 3.41
3452 5270 9.495754 GAATATGAGCTGAAACATTAAACTGAC 57.504 33.333 0.00 0.00 0.00 3.51
3453 5271 5.689383 TGAGCTGAAACATTAAACTGACC 57.311 39.130 0.00 0.00 0.00 4.02
3454 5272 4.213270 TGAGCTGAAACATTAAACTGACCG 59.787 41.667 0.00 0.00 0.00 4.79
3455 5273 4.385825 AGCTGAAACATTAAACTGACCGA 58.614 39.130 0.00 0.00 0.00 4.69
3456 5274 4.213482 AGCTGAAACATTAAACTGACCGAC 59.787 41.667 0.00 0.00 0.00 4.79
3457 5275 4.698276 CTGAAACATTAAACTGACCGACG 58.302 43.478 0.00 0.00 0.00 5.12
3458 5276 4.370049 TGAAACATTAAACTGACCGACGA 58.630 39.130 0.00 0.00 0.00 4.20
3459 5277 4.809958 TGAAACATTAAACTGACCGACGAA 59.190 37.500 0.00 0.00 0.00 3.85
3460 5278 5.467399 TGAAACATTAAACTGACCGACGAAT 59.533 36.000 0.00 0.00 0.00 3.34
3461 5279 6.645827 TGAAACATTAAACTGACCGACGAATA 59.354 34.615 0.00 0.00 0.00 1.75
3462 5280 7.332430 TGAAACATTAAACTGACCGACGAATAT 59.668 33.333 0.00 0.00 0.00 1.28
3463 5281 6.583912 ACATTAAACTGACCGACGAATATG 57.416 37.500 0.00 0.00 0.00 1.78
3464 5282 6.103997 ACATTAAACTGACCGACGAATATGT 58.896 36.000 0.00 0.00 0.00 2.29
3465 5283 7.259882 ACATTAAACTGACCGACGAATATGTA 58.740 34.615 0.00 0.00 0.00 2.29
3466 5284 7.760794 ACATTAAACTGACCGACGAATATGTAA 59.239 33.333 0.00 0.00 0.00 2.41
3467 5285 8.597227 CATTAAACTGACCGACGAATATGTAAA 58.403 33.333 0.00 0.00 0.00 2.01
3468 5286 8.531622 TTAAACTGACCGACGAATATGTAAAA 57.468 30.769 0.00 0.00 0.00 1.52
3469 5287 7.424227 AAACTGACCGACGAATATGTAAAAA 57.576 32.000 0.00 0.00 0.00 1.94
3499 5317 9.601217 TTAGCACTTTTCTGACTAATCTAATCC 57.399 33.333 0.00 0.00 0.00 3.01
3500 5318 7.624549 AGCACTTTTCTGACTAATCTAATCCA 58.375 34.615 0.00 0.00 0.00 3.41
3501 5319 7.550906 AGCACTTTTCTGACTAATCTAATCCAC 59.449 37.037 0.00 0.00 0.00 4.02
3502 5320 7.464710 GCACTTTTCTGACTAATCTAATCCACG 60.465 40.741 0.00 0.00 0.00 4.94
3503 5321 7.759886 CACTTTTCTGACTAATCTAATCCACGA 59.240 37.037 0.00 0.00 0.00 4.35
3504 5322 7.976734 ACTTTTCTGACTAATCTAATCCACGAG 59.023 37.037 0.00 0.00 0.00 4.18
3505 5323 7.406031 TTTCTGACTAATCTAATCCACGAGT 57.594 36.000 0.00 0.00 0.00 4.18
3506 5324 8.515695 TTTCTGACTAATCTAATCCACGAGTA 57.484 34.615 0.00 0.00 0.00 2.59
3507 5325 8.515695 TTCTGACTAATCTAATCCACGAGTAA 57.484 34.615 0.00 0.00 0.00 2.24
3508 5326 8.155821 TCTGACTAATCTAATCCACGAGTAAG 57.844 38.462 0.00 0.00 0.00 2.34
3509 5327 6.736123 TGACTAATCTAATCCACGAGTAAGC 58.264 40.000 0.00 0.00 0.00 3.09
3510 5328 6.320418 TGACTAATCTAATCCACGAGTAAGCA 59.680 38.462 0.00 0.00 0.00 3.91
3511 5329 7.108841 ACTAATCTAATCCACGAGTAAGCAA 57.891 36.000 0.00 0.00 0.00 3.91
3512 5330 7.727181 ACTAATCTAATCCACGAGTAAGCAAT 58.273 34.615 0.00 0.00 0.00 3.56
3513 5331 8.857098 ACTAATCTAATCCACGAGTAAGCAATA 58.143 33.333 0.00 0.00 0.00 1.90
3514 5332 9.692749 CTAATCTAATCCACGAGTAAGCAATAA 57.307 33.333 0.00 0.00 0.00 1.40
3515 5333 8.958119 AATCTAATCCACGAGTAAGCAATAAA 57.042 30.769 0.00 0.00 0.00 1.40
3516 5334 7.766219 TCTAATCCACGAGTAAGCAATAAAC 57.234 36.000 0.00 0.00 0.00 2.01
3517 5335 7.324935 TCTAATCCACGAGTAAGCAATAAACA 58.675 34.615 0.00 0.00 0.00 2.83
3518 5336 7.985184 TCTAATCCACGAGTAAGCAATAAACAT 59.015 33.333 0.00 0.00 0.00 2.71
3519 5337 5.794687 TCCACGAGTAAGCAATAAACATG 57.205 39.130 0.00 0.00 0.00 3.21
3520 5338 4.634004 TCCACGAGTAAGCAATAAACATGG 59.366 41.667 0.00 0.00 0.00 3.66
3521 5339 4.342772 CACGAGTAAGCAATAAACATGGC 58.657 43.478 0.00 0.00 0.00 4.40
3522 5340 3.063452 ACGAGTAAGCAATAAACATGGCG 59.937 43.478 0.00 0.00 0.00 5.69
3523 5341 3.308595 CGAGTAAGCAATAAACATGGCGA 59.691 43.478 0.00 0.00 0.00 5.54
3524 5342 4.201773 CGAGTAAGCAATAAACATGGCGAA 60.202 41.667 0.00 0.00 0.00 4.70
3525 5343 5.504010 CGAGTAAGCAATAAACATGGCGAAT 60.504 40.000 0.00 0.00 0.00 3.34
3526 5344 6.292649 CGAGTAAGCAATAAACATGGCGAATA 60.293 38.462 0.00 0.00 0.00 1.75
3527 5345 6.725246 AGTAAGCAATAAACATGGCGAATAC 58.275 36.000 0.00 0.00 0.00 1.89
3528 5346 4.209452 AGCAATAAACATGGCGAATACG 57.791 40.909 0.00 0.00 42.93 3.06
3529 5347 3.003275 AGCAATAAACATGGCGAATACGG 59.997 43.478 0.00 0.00 40.15 4.02
3530 5348 3.242936 GCAATAAACATGGCGAATACGGT 60.243 43.478 0.00 0.00 40.15 4.83
3531 5349 4.024725 GCAATAAACATGGCGAATACGGTA 60.025 41.667 0.00 0.00 40.15 4.02
3532 5350 5.334569 GCAATAAACATGGCGAATACGGTAT 60.335 40.000 0.00 0.00 40.15 2.73
3533 5351 5.856126 ATAAACATGGCGAATACGGTATG 57.144 39.130 0.58 0.00 40.15 2.39
3534 5352 1.508632 ACATGGCGAATACGGTATGC 58.491 50.000 0.58 0.00 40.15 3.14
3535 5353 1.202592 ACATGGCGAATACGGTATGCA 60.203 47.619 6.92 0.00 40.15 3.96
3536 5354 2.076100 CATGGCGAATACGGTATGCAT 58.924 47.619 3.79 3.79 40.15 3.96
3537 5355 1.790755 TGGCGAATACGGTATGCATC 58.209 50.000 0.19 0.00 40.15 3.91
3538 5356 1.343142 TGGCGAATACGGTATGCATCT 59.657 47.619 0.19 0.00 40.15 2.90
3539 5357 1.993370 GGCGAATACGGTATGCATCTC 59.007 52.381 0.19 0.00 40.15 2.75
3540 5358 2.609491 GGCGAATACGGTATGCATCTCA 60.609 50.000 0.19 0.00 40.15 3.27
3541 5359 3.254060 GCGAATACGGTATGCATCTCAT 58.746 45.455 0.19 0.00 40.15 2.90
3542 5360 3.061295 GCGAATACGGTATGCATCTCATG 59.939 47.826 0.19 0.00 40.15 3.07
3543 5361 3.061295 CGAATACGGTATGCATCTCATGC 59.939 47.826 0.19 1.31 45.08 4.06
3544 5362 5.147721 CGAATACGGTATGCATCTCATGCT 61.148 45.833 0.19 0.00 45.09 3.79
3545 5363 7.127734 CGAATACGGTATGCATCTCATGCTG 62.128 48.000 0.19 0.00 45.92 4.41
3555 5373 3.397482 CATCTCATGCTGGTACCTAAGC 58.603 50.000 15.66 15.66 39.96 3.09
3560 5378 2.401583 TGCTGGTACCTAAGCATGTG 57.598 50.000 20.10 0.00 44.26 3.21
3561 5379 1.905894 TGCTGGTACCTAAGCATGTGA 59.094 47.619 20.10 0.69 44.26 3.58
3562 5380 2.093500 TGCTGGTACCTAAGCATGTGAG 60.093 50.000 20.10 3.80 44.26 3.51
3563 5381 2.555199 CTGGTACCTAAGCATGTGAGC 58.445 52.381 14.36 0.00 34.44 4.26
3564 5382 1.905894 TGGTACCTAAGCATGTGAGCA 59.094 47.619 14.36 0.00 36.85 4.26
3565 5383 2.280628 GGTACCTAAGCATGTGAGCAC 58.719 52.381 4.06 0.00 36.85 4.40
3566 5384 1.927174 GTACCTAAGCATGTGAGCACG 59.073 52.381 0.00 0.00 36.85 5.34
3567 5385 0.321671 ACCTAAGCATGTGAGCACGT 59.678 50.000 0.00 0.00 36.85 4.49
3568 5386 1.548719 ACCTAAGCATGTGAGCACGTA 59.451 47.619 0.00 0.00 36.85 3.57
3569 5387 1.927174 CCTAAGCATGTGAGCACGTAC 59.073 52.381 0.00 0.00 36.85 3.67
3570 5388 2.606108 CTAAGCATGTGAGCACGTACA 58.394 47.619 0.00 0.00 36.85 2.90
3571 5389 1.432514 AAGCATGTGAGCACGTACAG 58.567 50.000 0.00 0.00 36.85 2.74
3572 5390 0.318441 AGCATGTGAGCACGTACAGT 59.682 50.000 0.00 0.00 36.85 3.55
3573 5391 1.544246 AGCATGTGAGCACGTACAGTA 59.456 47.619 0.00 0.00 36.85 2.74
3574 5392 1.654105 GCATGTGAGCACGTACAGTAC 59.346 52.381 0.00 0.00 0.00 2.73
3575 5393 2.924880 GCATGTGAGCACGTACAGTACA 60.925 50.000 11.37 0.00 0.00 2.90
3576 5394 3.511699 CATGTGAGCACGTACAGTACAT 58.488 45.455 11.37 0.00 30.70 2.29
3577 5395 4.668289 CATGTGAGCACGTACAGTACATA 58.332 43.478 11.37 0.00 29.83 2.29
3578 5396 4.351131 TGTGAGCACGTACAGTACATAG 57.649 45.455 11.37 1.17 0.00 2.23
3579 5397 4.004982 TGTGAGCACGTACAGTACATAGA 58.995 43.478 11.37 0.00 0.00 1.98
3580 5398 4.456566 TGTGAGCACGTACAGTACATAGAA 59.543 41.667 11.37 0.00 0.00 2.10
3581 5399 4.792189 GTGAGCACGTACAGTACATAGAAC 59.208 45.833 11.37 0.00 0.00 3.01
3582 5400 4.142534 TGAGCACGTACAGTACATAGAACC 60.143 45.833 11.37 0.00 0.00 3.62
3583 5401 3.760151 AGCACGTACAGTACATAGAACCA 59.240 43.478 11.37 0.00 0.00 3.67
3584 5402 4.219070 AGCACGTACAGTACATAGAACCAA 59.781 41.667 11.37 0.00 0.00 3.67
3585 5403 4.925054 GCACGTACAGTACATAGAACCAAA 59.075 41.667 11.37 0.00 0.00 3.28
3586 5404 5.406175 GCACGTACAGTACATAGAACCAAAA 59.594 40.000 11.37 0.00 0.00 2.44
3587 5405 6.617105 GCACGTACAGTACATAGAACCAAAAC 60.617 42.308 11.37 0.00 0.00 2.43
3588 5406 6.421501 CACGTACAGTACATAGAACCAAAACA 59.578 38.462 11.37 0.00 0.00 2.83
3589 5407 7.117236 CACGTACAGTACATAGAACCAAAACAT 59.883 37.037 11.37 0.00 0.00 2.71
3590 5408 7.330208 ACGTACAGTACATAGAACCAAAACATC 59.670 37.037 11.37 0.00 0.00 3.06
3591 5409 7.544566 CGTACAGTACATAGAACCAAAACATCT 59.455 37.037 11.37 0.00 0.00 2.90
3592 5410 9.865321 GTACAGTACATAGAACCAAAACATCTA 57.135 33.333 5.79 0.00 0.00 1.98
3601 5419 7.581213 AGAACCAAAACATCTATGAACAACA 57.419 32.000 0.00 0.00 0.00 3.33
3602 5420 8.181904 AGAACCAAAACATCTATGAACAACAT 57.818 30.769 0.00 0.00 42.39 2.71
3603 5421 9.295825 AGAACCAAAACATCTATGAACAACATA 57.704 29.630 0.00 0.00 40.07 2.29
3611 5429 8.703604 ACATCTATGAACAACATATATACGGC 57.296 34.615 0.00 0.00 40.18 5.68
3612 5430 8.531982 ACATCTATGAACAACATATATACGGCT 58.468 33.333 0.00 0.00 40.18 5.52
3615 5433 8.188799 TCTATGAACAACATATATACGGCTAGC 58.811 37.037 6.04 6.04 40.18 3.42
3616 5434 6.091718 TGAACAACATATATACGGCTAGCA 57.908 37.500 18.24 0.00 0.00 3.49
3617 5435 5.924254 TGAACAACATATATACGGCTAGCAC 59.076 40.000 18.24 5.06 0.00 4.40
3618 5436 5.462530 ACAACATATATACGGCTAGCACA 57.537 39.130 18.24 0.28 0.00 4.57
3619 5437 6.037786 ACAACATATATACGGCTAGCACAT 57.962 37.500 18.24 8.51 0.00 3.21
3620 5438 5.869344 ACAACATATATACGGCTAGCACATG 59.131 40.000 18.24 10.23 0.00 3.21
3621 5439 5.661056 ACATATATACGGCTAGCACATGT 57.339 39.130 18.24 11.32 0.00 3.21
3622 5440 5.651530 ACATATATACGGCTAGCACATGTC 58.348 41.667 18.24 0.00 0.00 3.06
3623 5441 3.594603 ATATACGGCTAGCACATGTCC 57.405 47.619 18.24 0.00 0.00 4.02
3624 5442 0.032130 ATACGGCTAGCACATGTCCG 59.968 55.000 18.24 18.40 45.04 4.79
3625 5443 1.033202 TACGGCTAGCACATGTCCGA 61.033 55.000 24.74 9.52 42.43 4.55
3626 5444 1.589993 CGGCTAGCACATGTCCGAG 60.590 63.158 18.24 4.81 42.43 4.63
3627 5445 1.517832 GGCTAGCACATGTCCGAGT 59.482 57.895 18.24 0.00 0.00 4.18
3628 5446 0.744874 GGCTAGCACATGTCCGAGTA 59.255 55.000 18.24 0.00 0.00 2.59
3629 5447 1.136305 GGCTAGCACATGTCCGAGTAA 59.864 52.381 18.24 0.00 0.00 2.24
3630 5448 2.418197 GGCTAGCACATGTCCGAGTAAA 60.418 50.000 18.24 0.00 0.00 2.01
3631 5449 3.458189 GCTAGCACATGTCCGAGTAAAT 58.542 45.455 10.63 0.00 0.00 1.40
3632 5450 3.246226 GCTAGCACATGTCCGAGTAAATG 59.754 47.826 10.63 0.00 0.00 2.32
3633 5451 3.610040 AGCACATGTCCGAGTAAATGA 57.390 42.857 0.00 0.00 0.00 2.57
3634 5452 3.525537 AGCACATGTCCGAGTAAATGAG 58.474 45.455 0.00 0.00 0.00 2.90
3635 5453 2.609459 GCACATGTCCGAGTAAATGAGG 59.391 50.000 0.00 0.00 0.00 3.86
3636 5454 3.198068 CACATGTCCGAGTAAATGAGGG 58.802 50.000 0.00 0.00 0.00 4.30
3637 5455 3.104512 ACATGTCCGAGTAAATGAGGGA 58.895 45.455 0.00 0.00 0.00 4.20
3638 5456 3.711704 ACATGTCCGAGTAAATGAGGGAT 59.288 43.478 0.00 0.00 0.00 3.85
3639 5457 3.819564 TGTCCGAGTAAATGAGGGATG 57.180 47.619 0.00 0.00 0.00 3.51
3640 5458 3.371034 TGTCCGAGTAAATGAGGGATGA 58.629 45.455 0.00 0.00 0.00 2.92
3641 5459 3.772572 TGTCCGAGTAAATGAGGGATGAA 59.227 43.478 0.00 0.00 0.00 2.57
3642 5460 4.120589 GTCCGAGTAAATGAGGGATGAAC 58.879 47.826 0.00 0.00 0.00 3.18
3643 5461 3.772572 TCCGAGTAAATGAGGGATGAACA 59.227 43.478 0.00 0.00 0.00 3.18
3644 5462 4.122776 CCGAGTAAATGAGGGATGAACAG 58.877 47.826 0.00 0.00 0.00 3.16
3645 5463 4.141937 CCGAGTAAATGAGGGATGAACAGA 60.142 45.833 0.00 0.00 0.00 3.41
3646 5464 5.453903 CCGAGTAAATGAGGGATGAACAGAT 60.454 44.000 0.00 0.00 0.00 2.90
3647 5465 5.694006 CGAGTAAATGAGGGATGAACAGATC 59.306 44.000 0.00 0.00 0.00 2.75
3648 5466 6.566079 AGTAAATGAGGGATGAACAGATCA 57.434 37.500 0.00 0.00 43.67 2.92
3658 5476 3.751479 TGAACAGATCATACCATCCGG 57.249 47.619 0.00 0.00 33.20 5.14
3659 5477 3.038280 TGAACAGATCATACCATCCGGT 58.962 45.455 0.00 0.00 40.48 5.28
3660 5478 3.454447 TGAACAGATCATACCATCCGGTT 59.546 43.478 0.00 0.00 38.91 4.44
3661 5479 4.651962 TGAACAGATCATACCATCCGGTTA 59.348 41.667 0.00 0.00 38.91 2.85
3662 5480 4.873746 ACAGATCATACCATCCGGTTAG 57.126 45.455 0.00 0.00 46.31 2.34
3663 5481 3.006967 ACAGATCATACCATCCGGTTAGC 59.993 47.826 0.00 0.00 46.31 3.09
3664 5482 2.567615 AGATCATACCATCCGGTTAGCC 59.432 50.000 0.00 0.00 46.31 3.93
3665 5483 1.796017 TCATACCATCCGGTTAGCCA 58.204 50.000 0.00 0.00 46.31 4.75
3666 5484 1.691976 TCATACCATCCGGTTAGCCAG 59.308 52.381 0.00 0.00 46.31 4.85
3667 5485 1.056660 ATACCATCCGGTTAGCCAGG 58.943 55.000 0.00 0.00 46.31 4.45
3668 5486 1.692173 TACCATCCGGTTAGCCAGGC 61.692 60.000 1.84 1.84 46.31 4.85
3669 5487 2.203209 CATCCGGTTAGCCAGGCC 60.203 66.667 8.22 0.00 34.09 5.19
3670 5488 2.690881 ATCCGGTTAGCCAGGCCA 60.691 61.111 8.22 0.00 34.09 5.36
3671 5489 2.305607 ATCCGGTTAGCCAGGCCAA 61.306 57.895 8.22 0.00 34.09 4.52
3672 5490 2.552231 ATCCGGTTAGCCAGGCCAAC 62.552 60.000 14.00 14.00 34.09 3.77
3673 5491 3.124921 CGGTTAGCCAGGCCAACG 61.125 66.667 15.62 10.26 34.09 4.10
3674 5492 3.440415 GGTTAGCCAGGCCAACGC 61.440 66.667 15.62 2.42 34.09 4.84
3675 5493 3.799755 GTTAGCCAGGCCAACGCG 61.800 66.667 8.22 3.53 35.02 6.01
3712 5530 4.394078 CCTCGGCGTCGTTCGTGA 62.394 66.667 10.18 0.00 42.13 4.35
3713 5531 3.164011 CTCGGCGTCGTTCGTGAC 61.164 66.667 10.18 0.00 42.13 3.67
3714 5532 4.688419 TCGGCGTCGTTCGTGACC 62.688 66.667 10.18 0.00 42.13 4.02
3715 5533 4.695231 CGGCGTCGTTCGTGACCT 62.695 66.667 0.00 0.00 42.13 3.85
3716 5534 2.355481 GGCGTCGTTCGTGACCTT 60.355 61.111 0.00 0.00 42.13 3.50
3717 5535 2.370393 GGCGTCGTTCGTGACCTTC 61.370 63.158 0.00 0.00 42.13 3.46
3718 5536 1.371389 GCGTCGTTCGTGACCTTCT 60.371 57.895 0.00 0.00 42.13 2.85
3719 5537 0.938168 GCGTCGTTCGTGACCTTCTT 60.938 55.000 0.00 0.00 42.13 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.464157 AGAGCAAGCACACCTAGAAC 57.536 50.000 0.00 0.00 0.00 3.01
1 2 4.040461 ACTTTAGAGCAAGCACACCTAGAA 59.960 41.667 0.00 0.00 0.00 2.10
2 3 3.578716 ACTTTAGAGCAAGCACACCTAGA 59.421 43.478 0.00 0.00 0.00 2.43
4 5 4.351874 AACTTTAGAGCAAGCACACCTA 57.648 40.909 0.00 0.00 0.00 3.08
5 6 2.938956 ACTTTAGAGCAAGCACACCT 57.061 45.000 0.00 0.00 0.00 4.00
6 7 3.315191 TCAAACTTTAGAGCAAGCACACC 59.685 43.478 0.00 0.00 0.00 4.16
7 8 4.552166 TCAAACTTTAGAGCAAGCACAC 57.448 40.909 0.00 0.00 0.00 3.82
8 9 5.105957 TGTTTCAAACTTTAGAGCAAGCACA 60.106 36.000 1.10 0.00 0.00 4.57
9 10 5.230097 GTGTTTCAAACTTTAGAGCAAGCAC 59.770 40.000 1.10 0.00 0.00 4.40
10 11 5.125417 AGTGTTTCAAACTTTAGAGCAAGCA 59.875 36.000 1.10 0.00 0.00 3.91
11 12 5.456822 CAGTGTTTCAAACTTTAGAGCAAGC 59.543 40.000 1.10 0.00 0.00 4.01
12 13 5.973565 CCAGTGTTTCAAACTTTAGAGCAAG 59.026 40.000 1.10 0.00 0.00 4.01
13 14 5.163561 CCCAGTGTTTCAAACTTTAGAGCAA 60.164 40.000 1.10 0.00 0.00 3.91
14 15 4.338118 CCCAGTGTTTCAAACTTTAGAGCA 59.662 41.667 1.10 0.00 0.00 4.26
15 16 4.793028 GCCCAGTGTTTCAAACTTTAGAGC 60.793 45.833 1.10 0.00 0.00 4.09
16 17 4.261614 GGCCCAGTGTTTCAAACTTTAGAG 60.262 45.833 1.10 0.00 0.00 2.43
17 18 3.634910 GGCCCAGTGTTTCAAACTTTAGA 59.365 43.478 1.10 0.00 0.00 2.10
18 19 3.636764 AGGCCCAGTGTTTCAAACTTTAG 59.363 43.478 0.00 0.00 0.00 1.85
34 35 4.828072 AAGTAAACAAACAAAAGGCCCA 57.172 36.364 0.00 0.00 0.00 5.36
43 44 8.536175 AGAAATCCTCCAAAAAGTAAACAAACA 58.464 29.630 0.00 0.00 0.00 2.83
51 52 9.807921 ACATCTAAAGAAATCCTCCAAAAAGTA 57.192 29.630 0.00 0.00 0.00 2.24
61 62 7.544804 AGCCAAAAACATCTAAAGAAATCCT 57.455 32.000 0.00 0.00 0.00 3.24
69 70 9.237187 TGACATACATAGCCAAAAACATCTAAA 57.763 29.630 0.00 0.00 0.00 1.85
70 71 8.800370 TGACATACATAGCCAAAAACATCTAA 57.200 30.769 0.00 0.00 0.00 2.10
76 77 8.986477 AAGAAATGACATACATAGCCAAAAAC 57.014 30.769 0.00 0.00 38.38 2.43
80 81 7.392953 TGTGAAAGAAATGACATACATAGCCAA 59.607 33.333 0.00 0.00 38.38 4.52
82 83 7.320443 TGTGAAAGAAATGACATACATAGCC 57.680 36.000 0.00 0.00 38.38 3.93
83 84 7.280876 TCCTGTGAAAGAAATGACATACATAGC 59.719 37.037 0.00 0.00 38.38 2.97
119 127 6.944096 ACACACTCCTAAGGAATTTACTACC 58.056 40.000 0.00 0.00 0.00 3.18
123 131 5.801380 TGGACACACTCCTAAGGAATTTAC 58.199 41.667 0.00 0.00 40.26 2.01
138 146 4.452455 GGAATTGGATCGATATGGACACAC 59.548 45.833 0.00 0.00 0.00 3.82
155 163 3.278574 TGGCACGAATCCTTAGGAATTG 58.721 45.455 4.56 3.15 34.34 2.32
163 171 3.950397 TCACTTAATGGCACGAATCCTT 58.050 40.909 0.00 0.00 0.00 3.36
164 172 3.627395 TCACTTAATGGCACGAATCCT 57.373 42.857 0.00 0.00 0.00 3.24
173 181 2.099098 CCATCCGGTTTCACTTAATGGC 59.901 50.000 0.00 0.00 0.00 4.40
179 187 3.509967 GGAATTTCCATCCGGTTTCACTT 59.490 43.478 10.67 0.00 36.28 3.16
189 197 4.677673 CAATCCTTGGGAATTTCCATCC 57.322 45.455 17.08 0.81 38.64 3.51
202 211 0.032813 ATGCCCCACTCCAATCCTTG 60.033 55.000 0.00 0.00 0.00 3.61
205 214 2.129785 GCATGCCCCACTCCAATCC 61.130 63.158 6.36 0.00 0.00 3.01
206 215 0.757935 ATGCATGCCCCACTCCAATC 60.758 55.000 16.68 0.00 0.00 2.67
216 225 2.109431 ACGATTGTGATGCATGCCC 58.891 52.632 16.68 7.77 0.00 5.36
227 236 0.951558 GGCAAACTGGTCACGATTGT 59.048 50.000 0.00 0.00 0.00 2.71
232 241 1.289109 CCGTAGGCAAACTGGTCACG 61.289 60.000 0.00 0.00 46.14 4.35
233 242 2.540145 CCGTAGGCAAACTGGTCAC 58.460 57.895 0.00 0.00 46.14 3.67
245 254 6.330278 TCGATAATCTATCAAATGCCGTAGG 58.670 40.000 0.00 0.00 42.99 3.18
246 255 7.812309 TTCGATAATCTATCAAATGCCGTAG 57.188 36.000 0.00 0.00 34.87 3.51
247 256 8.771920 AATTCGATAATCTATCAAATGCCGTA 57.228 30.769 0.00 0.00 34.87 4.02
248 257 7.672983 AATTCGATAATCTATCAAATGCCGT 57.327 32.000 0.00 0.00 34.87 5.68
249 258 9.087424 TCTAATTCGATAATCTATCAAATGCCG 57.913 33.333 0.00 0.00 34.87 5.69
261 270 8.964367 GCAATCGCTTATCTAATTCGATAATC 57.036 34.615 11.59 7.81 38.71 1.75
405 416 7.350467 TGAACGATACAAGATACAGATACGTC 58.650 38.462 0.00 0.00 0.00 4.34
526 541 0.312416 CAAACCCCGAAACGATTGCA 59.688 50.000 0.00 0.00 0.00 4.08
527 542 0.312729 ACAAACCCCGAAACGATTGC 59.687 50.000 0.00 0.00 0.00 3.56
528 543 2.657184 GAACAAACCCCGAAACGATTG 58.343 47.619 0.00 0.00 0.00 2.67
529 544 1.264826 CGAACAAACCCCGAAACGATT 59.735 47.619 0.00 0.00 0.00 3.34
530 545 0.869730 CGAACAAACCCCGAAACGAT 59.130 50.000 0.00 0.00 0.00 3.73
531 546 0.461693 ACGAACAAACCCCGAAACGA 60.462 50.000 0.00 0.00 0.00 3.85
532 547 0.316360 CACGAACAAACCCCGAAACG 60.316 55.000 0.00 0.00 0.00 3.60
543 603 0.665835 AAATCCGCTTGCACGAACAA 59.334 45.000 0.00 0.00 34.06 2.83
554 615 3.263941 GCGTGGTTGAAATCCGCT 58.736 55.556 0.00 0.00 41.06 5.52
581 669 3.365364 CCAATTCTGCGTGTTCTTCCTTC 60.365 47.826 0.00 0.00 0.00 3.46
609 1952 0.397187 CATCATCCTGCCTCCCTCTG 59.603 60.000 0.00 0.00 0.00 3.35
614 1957 0.686224 CCTCTCATCATCCTGCCTCC 59.314 60.000 0.00 0.00 0.00 4.30
855 2528 4.570663 CCTCCGCTTCCGCTACCG 62.571 72.222 0.00 0.00 0.00 4.02
856 2529 4.893601 GCCTCCGCTTCCGCTACC 62.894 72.222 0.00 0.00 0.00 3.18
857 2530 4.143333 TGCCTCCGCTTCCGCTAC 62.143 66.667 0.00 0.00 35.36 3.58
858 2531 3.838271 CTGCCTCCGCTTCCGCTA 61.838 66.667 0.00 0.00 35.36 4.26
871 2544 4.129737 TGCCGAGACGCTACTGCC 62.130 66.667 0.00 0.00 35.36 4.85
977 2665 1.484444 GGAGAGGTGGCTGGTTGAGT 61.484 60.000 0.00 0.00 0.00 3.41
989 2677 0.968393 GAGAGAGTTGGCGGAGAGGT 60.968 60.000 0.00 0.00 0.00 3.85
1038 2727 2.938838 ACAGGAGGAGAGATAAGACGG 58.061 52.381 0.00 0.00 0.00 4.79
1187 2876 2.807895 GCGGCGTTGAAGTAGCGA 60.808 61.111 9.37 0.00 34.68 4.93
1319 3008 4.586618 CTGTTCCAGCTCACCTCG 57.413 61.111 0.00 0.00 0.00 4.63
1581 3270 2.804090 GTCGAACCTCGCGTGGAC 60.804 66.667 32.11 22.20 40.21 4.02
1740 3429 1.524002 CGCTGGTCCCATGATCTGT 59.476 57.895 0.00 0.00 0.00 3.41
1772 3461 3.534056 CCTACGTCGGGCGGGAAT 61.534 66.667 7.03 0.00 46.52 3.01
1799 3488 1.522580 GAATCCGCCAGAGCTCACC 60.523 63.158 17.77 2.25 36.60 4.02
1848 3537 2.507992 GACGACGCTGCTGCTGAT 60.508 61.111 14.03 0.00 36.97 2.90
2686 4431 9.844257 ACGATAGGAGTAACTAATTACAGTAGT 57.156 33.333 0.00 0.00 41.51 2.73
2829 4630 1.805945 GACCACGCTAGCTGGTTCG 60.806 63.158 28.33 10.91 42.42 3.95
2922 4728 0.036010 AAACTCGCCTCCACTCCATG 60.036 55.000 0.00 0.00 0.00 3.66
2923 4729 0.036010 CAAACTCGCCTCCACTCCAT 60.036 55.000 0.00 0.00 0.00 3.41
2924 4730 1.371183 CAAACTCGCCTCCACTCCA 59.629 57.895 0.00 0.00 0.00 3.86
2925 4731 2.035442 GCAAACTCGCCTCCACTCC 61.035 63.158 0.00 0.00 0.00 3.85
2926 4732 1.004440 AGCAAACTCGCCTCCACTC 60.004 57.895 0.00 0.00 0.00 3.51
2927 4733 1.302033 CAGCAAACTCGCCTCCACT 60.302 57.895 0.00 0.00 0.00 4.00
2970 4776 2.598907 CGAACGTTCGTTGCATCACTTT 60.599 45.455 35.92 0.00 45.09 2.66
2971 4777 1.070843 CGAACGTTCGTTGCATCACTT 60.071 47.619 35.92 0.00 45.09 3.16
2992 4807 2.362889 CAGGAAAATGCCCCGGCT 60.363 61.111 7.35 0.00 42.51 5.52
3136 4951 0.235665 CAAGCGCCGCAATATACAGG 59.764 55.000 13.36 0.00 0.00 4.00
3140 4955 1.506309 CCTGCAAGCGCCGCAATATA 61.506 55.000 20.96 0.48 39.30 0.86
3141 4956 2.717485 CTGCAAGCGCCGCAATAT 59.283 55.556 20.96 0.00 39.30 1.28
3172 4989 2.555547 AAGGCGCAAGTTGGTGAGC 61.556 57.895 10.83 0.00 42.86 4.26
3202 5020 5.455392 CACTCTTTCATCAACCACATTGTC 58.545 41.667 0.00 0.00 39.54 3.18
3231 5049 3.936902 TGTGTCAGTTAAAGAACGTGC 57.063 42.857 0.00 0.00 40.76 5.34
3236 5054 2.096466 CGCGCATGTGTCAGTTAAAGAA 60.096 45.455 8.75 0.00 0.00 2.52
3282 5100 6.966632 TGCTTGATTAATAAAGTGCGATGTTC 59.033 34.615 13.19 0.00 0.00 3.18
3286 5104 6.851609 TGTTGCTTGATTAATAAAGTGCGAT 58.148 32.000 13.19 0.00 0.00 4.58
3317 5135 1.338107 TTGCGGGAGAAGACTCTTGA 58.662 50.000 0.00 0.00 42.28 3.02
3322 5140 2.341846 TTGTTTTGCGGGAGAAGACT 57.658 45.000 0.00 0.00 0.00 3.24
3341 5159 6.659824 TCTTGGAGACTCTTGGTAACTTTTT 58.340 36.000 1.74 0.00 37.61 1.94
3342 5160 6.248569 TCTTGGAGACTCTTGGTAACTTTT 57.751 37.500 1.74 0.00 37.61 2.27
3343 5161 5.888982 TCTTGGAGACTCTTGGTAACTTT 57.111 39.130 1.74 0.00 37.61 2.66
3344 5162 6.497259 TGTATCTTGGAGACTCTTGGTAACTT 59.503 38.462 1.74 0.00 37.61 2.66
3345 5163 6.017192 TGTATCTTGGAGACTCTTGGTAACT 58.983 40.000 1.74 0.00 37.61 2.24
3346 5164 6.282199 TGTATCTTGGAGACTCTTGGTAAC 57.718 41.667 1.74 0.00 0.00 2.50
3347 5165 6.928348 TTGTATCTTGGAGACTCTTGGTAA 57.072 37.500 1.74 0.00 0.00 2.85
3348 5166 8.642432 CATATTGTATCTTGGAGACTCTTGGTA 58.358 37.037 1.74 0.00 0.00 3.25
3349 5167 7.419518 CCATATTGTATCTTGGAGACTCTTGGT 60.420 40.741 1.74 0.00 0.00 3.67
3350 5168 6.933521 CCATATTGTATCTTGGAGACTCTTGG 59.066 42.308 1.74 0.00 0.00 3.61
3351 5169 7.730084 TCCATATTGTATCTTGGAGACTCTTG 58.270 38.462 1.74 0.00 33.40 3.02
3352 5170 7.921041 TCCATATTGTATCTTGGAGACTCTT 57.079 36.000 1.74 0.00 33.40 2.85
3359 5177 8.547481 TGTTCTACTCCATATTGTATCTTGGA 57.453 34.615 0.00 0.00 36.81 3.53
3360 5178 8.642432 TCTGTTCTACTCCATATTGTATCTTGG 58.358 37.037 0.00 0.00 0.00 3.61
3366 5184 9.109393 GCATTTTCTGTTCTACTCCATATTGTA 57.891 33.333 0.00 0.00 0.00 2.41
3367 5185 7.611467 TGCATTTTCTGTTCTACTCCATATTGT 59.389 33.333 0.00 0.00 0.00 2.71
3368 5186 7.988737 TGCATTTTCTGTTCTACTCCATATTG 58.011 34.615 0.00 0.00 0.00 1.90
3369 5187 8.579850 TTGCATTTTCTGTTCTACTCCATATT 57.420 30.769 0.00 0.00 0.00 1.28
3370 5188 8.579850 TTTGCATTTTCTGTTCTACTCCATAT 57.420 30.769 0.00 0.00 0.00 1.78
3371 5189 7.994425 TTTGCATTTTCTGTTCTACTCCATA 57.006 32.000 0.00 0.00 0.00 2.74
3372 5190 6.899393 TTTGCATTTTCTGTTCTACTCCAT 57.101 33.333 0.00 0.00 0.00 3.41
3373 5191 6.707440 TTTTGCATTTTCTGTTCTACTCCA 57.293 33.333 0.00 0.00 0.00 3.86
3374 5192 6.420903 GGTTTTTGCATTTTCTGTTCTACTCC 59.579 38.462 0.00 0.00 0.00 3.85
3375 5193 6.978080 TGGTTTTTGCATTTTCTGTTCTACTC 59.022 34.615 0.00 0.00 0.00 2.59
3376 5194 6.872920 TGGTTTTTGCATTTTCTGTTCTACT 58.127 32.000 0.00 0.00 0.00 2.57
3377 5195 7.532682 TTGGTTTTTGCATTTTCTGTTCTAC 57.467 32.000 0.00 0.00 0.00 2.59
3378 5196 9.474920 CTATTGGTTTTTGCATTTTCTGTTCTA 57.525 29.630 0.00 0.00 0.00 2.10
3379 5197 8.203485 TCTATTGGTTTTTGCATTTTCTGTTCT 58.797 29.630 0.00 0.00 0.00 3.01
3380 5198 8.364129 TCTATTGGTTTTTGCATTTTCTGTTC 57.636 30.769 0.00 0.00 0.00 3.18
3381 5199 7.986889 ACTCTATTGGTTTTTGCATTTTCTGTT 59.013 29.630 0.00 0.00 0.00 3.16
3382 5200 7.500141 ACTCTATTGGTTTTTGCATTTTCTGT 58.500 30.769 0.00 0.00 0.00 3.41
3383 5201 7.951530 ACTCTATTGGTTTTTGCATTTTCTG 57.048 32.000 0.00 0.00 0.00 3.02
3384 5202 8.203485 TGAACTCTATTGGTTTTTGCATTTTCT 58.797 29.630 0.00 0.00 0.00 2.52
3385 5203 8.364129 TGAACTCTATTGGTTTTTGCATTTTC 57.636 30.769 0.00 0.00 0.00 2.29
3386 5204 8.907222 ATGAACTCTATTGGTTTTTGCATTTT 57.093 26.923 0.00 0.00 0.00 1.82
3387 5205 9.423061 GTATGAACTCTATTGGTTTTTGCATTT 57.577 29.630 0.00 0.00 0.00 2.32
3388 5206 8.584157 TGTATGAACTCTATTGGTTTTTGCATT 58.416 29.630 0.00 0.00 0.00 3.56
3389 5207 8.121305 TGTATGAACTCTATTGGTTTTTGCAT 57.879 30.769 0.00 0.00 0.00 3.96
3390 5208 7.517614 TGTATGAACTCTATTGGTTTTTGCA 57.482 32.000 0.00 0.00 0.00 4.08
3391 5209 8.296713 TCTTGTATGAACTCTATTGGTTTTTGC 58.703 33.333 0.00 0.00 0.00 3.68
3392 5210 9.612620 GTCTTGTATGAACTCTATTGGTTTTTG 57.387 33.333 0.00 0.00 0.00 2.44
3393 5211 9.574516 AGTCTTGTATGAACTCTATTGGTTTTT 57.425 29.630 0.00 0.00 0.00 1.94
3394 5212 9.574516 AAGTCTTGTATGAACTCTATTGGTTTT 57.425 29.630 0.00 0.00 0.00 2.43
3396 5214 9.877178 CTAAGTCTTGTATGAACTCTATTGGTT 57.123 33.333 0.00 0.00 0.00 3.67
3397 5215 7.982354 GCTAAGTCTTGTATGAACTCTATTGGT 59.018 37.037 0.00 0.00 0.00 3.67
3398 5216 7.981789 TGCTAAGTCTTGTATGAACTCTATTGG 59.018 37.037 0.00 0.00 0.00 3.16
3399 5217 8.932945 TGCTAAGTCTTGTATGAACTCTATTG 57.067 34.615 0.00 0.00 0.00 1.90
3400 5218 9.593134 CTTGCTAAGTCTTGTATGAACTCTATT 57.407 33.333 0.00 0.00 0.00 1.73
3401 5219 8.972127 TCTTGCTAAGTCTTGTATGAACTCTAT 58.028 33.333 0.00 0.00 0.00 1.98
3402 5220 8.349568 TCTTGCTAAGTCTTGTATGAACTCTA 57.650 34.615 0.00 0.00 0.00 2.43
3403 5221 7.233389 TCTTGCTAAGTCTTGTATGAACTCT 57.767 36.000 0.00 0.00 0.00 3.24
3404 5222 7.891183 TTCTTGCTAAGTCTTGTATGAACTC 57.109 36.000 0.00 0.00 0.00 3.01
3408 5226 9.755804 CTCATATTCTTGCTAAGTCTTGTATGA 57.244 33.333 0.00 0.00 0.00 2.15
3409 5227 8.494347 GCTCATATTCTTGCTAAGTCTTGTATG 58.506 37.037 0.00 0.00 0.00 2.39
3410 5228 8.428063 AGCTCATATTCTTGCTAAGTCTTGTAT 58.572 33.333 0.00 0.00 33.64 2.29
3411 5229 7.708322 CAGCTCATATTCTTGCTAAGTCTTGTA 59.292 37.037 0.00 0.00 34.10 2.41
3412 5230 6.538021 CAGCTCATATTCTTGCTAAGTCTTGT 59.462 38.462 0.00 0.00 34.10 3.16
3413 5231 6.760298 TCAGCTCATATTCTTGCTAAGTCTTG 59.240 38.462 0.00 0.00 34.10 3.02
3414 5232 6.882656 TCAGCTCATATTCTTGCTAAGTCTT 58.117 36.000 0.00 0.00 34.10 3.01
3415 5233 6.477053 TCAGCTCATATTCTTGCTAAGTCT 57.523 37.500 0.00 0.00 34.10 3.24
3416 5234 7.065085 TGTTTCAGCTCATATTCTTGCTAAGTC 59.935 37.037 0.00 0.00 34.10 3.01
3417 5235 6.881065 TGTTTCAGCTCATATTCTTGCTAAGT 59.119 34.615 0.00 0.00 34.10 2.24
3418 5236 7.312657 TGTTTCAGCTCATATTCTTGCTAAG 57.687 36.000 0.00 0.00 34.10 2.18
3419 5237 7.870509 ATGTTTCAGCTCATATTCTTGCTAA 57.129 32.000 0.00 0.00 34.10 3.09
3420 5238 7.870509 AATGTTTCAGCTCATATTCTTGCTA 57.129 32.000 0.00 0.00 34.10 3.49
3421 5239 6.770746 AATGTTTCAGCTCATATTCTTGCT 57.229 33.333 0.00 0.00 36.04 3.91
3422 5240 8.801913 GTTTAATGTTTCAGCTCATATTCTTGC 58.198 33.333 0.00 0.00 0.00 4.01
3425 5243 9.453572 TCAGTTTAATGTTTCAGCTCATATTCT 57.546 29.630 0.00 0.00 0.00 2.40
3426 5244 9.495754 GTCAGTTTAATGTTTCAGCTCATATTC 57.504 33.333 0.00 0.00 0.00 1.75
3427 5245 8.462016 GGTCAGTTTAATGTTTCAGCTCATATT 58.538 33.333 0.00 0.00 0.00 1.28
3428 5246 7.201644 CGGTCAGTTTAATGTTTCAGCTCATAT 60.202 37.037 0.00 0.00 0.00 1.78
3429 5247 6.092122 CGGTCAGTTTAATGTTTCAGCTCATA 59.908 38.462 0.00 0.00 0.00 2.15
3430 5248 5.106555 CGGTCAGTTTAATGTTTCAGCTCAT 60.107 40.000 0.00 0.00 0.00 2.90
3431 5249 4.213270 CGGTCAGTTTAATGTTTCAGCTCA 59.787 41.667 0.00 0.00 0.00 4.26
3432 5250 4.451096 TCGGTCAGTTTAATGTTTCAGCTC 59.549 41.667 0.00 0.00 0.00 4.09
3433 5251 4.213482 GTCGGTCAGTTTAATGTTTCAGCT 59.787 41.667 0.00 0.00 0.00 4.24
3434 5252 4.464112 GTCGGTCAGTTTAATGTTTCAGC 58.536 43.478 0.00 0.00 0.00 4.26
3435 5253 4.446385 TCGTCGGTCAGTTTAATGTTTCAG 59.554 41.667 0.00 0.00 0.00 3.02
3436 5254 4.370049 TCGTCGGTCAGTTTAATGTTTCA 58.630 39.130 0.00 0.00 0.00 2.69
3437 5255 4.977741 TCGTCGGTCAGTTTAATGTTTC 57.022 40.909 0.00 0.00 0.00 2.78
3438 5256 5.934935 ATTCGTCGGTCAGTTTAATGTTT 57.065 34.783 0.00 0.00 0.00 2.83
3439 5257 6.592607 ACATATTCGTCGGTCAGTTTAATGTT 59.407 34.615 0.00 0.00 0.00 2.71
3440 5258 6.103997 ACATATTCGTCGGTCAGTTTAATGT 58.896 36.000 0.00 0.00 0.00 2.71
3441 5259 6.583912 ACATATTCGTCGGTCAGTTTAATG 57.416 37.500 0.00 0.00 0.00 1.90
3442 5260 8.706492 TTTACATATTCGTCGGTCAGTTTAAT 57.294 30.769 0.00 0.00 0.00 1.40
3443 5261 8.531622 TTTTACATATTCGTCGGTCAGTTTAA 57.468 30.769 0.00 0.00 0.00 1.52
3444 5262 8.531622 TTTTTACATATTCGTCGGTCAGTTTA 57.468 30.769 0.00 0.00 0.00 2.01
3445 5263 7.424227 TTTTTACATATTCGTCGGTCAGTTT 57.576 32.000 0.00 0.00 0.00 2.66
3473 5291 9.601217 GGATTAGATTAGTCAGAAAAGTGCTAA 57.399 33.333 0.00 0.00 0.00 3.09
3474 5292 8.758829 TGGATTAGATTAGTCAGAAAAGTGCTA 58.241 33.333 0.00 0.00 0.00 3.49
3475 5293 7.550906 GTGGATTAGATTAGTCAGAAAAGTGCT 59.449 37.037 0.00 0.00 0.00 4.40
3476 5294 7.464710 CGTGGATTAGATTAGTCAGAAAAGTGC 60.465 40.741 0.00 0.00 0.00 4.40
3477 5295 7.759886 TCGTGGATTAGATTAGTCAGAAAAGTG 59.240 37.037 0.00 0.00 0.00 3.16
3478 5296 7.837863 TCGTGGATTAGATTAGTCAGAAAAGT 58.162 34.615 0.00 0.00 0.00 2.66
3479 5297 7.976734 ACTCGTGGATTAGATTAGTCAGAAAAG 59.023 37.037 0.00 0.00 0.00 2.27
3480 5298 7.837863 ACTCGTGGATTAGATTAGTCAGAAAA 58.162 34.615 0.00 0.00 0.00 2.29
3481 5299 7.406031 ACTCGTGGATTAGATTAGTCAGAAA 57.594 36.000 0.00 0.00 0.00 2.52
3482 5300 8.515695 TTACTCGTGGATTAGATTAGTCAGAA 57.484 34.615 0.00 0.00 0.00 3.02
3483 5301 7.255173 GCTTACTCGTGGATTAGATTAGTCAGA 60.255 40.741 0.00 0.00 0.00 3.27
3484 5302 6.858993 GCTTACTCGTGGATTAGATTAGTCAG 59.141 42.308 0.00 0.00 0.00 3.51
3485 5303 6.320418 TGCTTACTCGTGGATTAGATTAGTCA 59.680 38.462 0.00 0.00 0.00 3.41
3486 5304 6.736123 TGCTTACTCGTGGATTAGATTAGTC 58.264 40.000 0.00 0.00 0.00 2.59
3487 5305 6.710597 TGCTTACTCGTGGATTAGATTAGT 57.289 37.500 0.00 0.00 0.00 2.24
3488 5306 9.692749 TTATTGCTTACTCGTGGATTAGATTAG 57.307 33.333 0.00 0.00 0.00 1.73
3490 5308 8.827677 GTTTATTGCTTACTCGTGGATTAGATT 58.172 33.333 0.00 0.00 0.00 2.40
3491 5309 7.985184 TGTTTATTGCTTACTCGTGGATTAGAT 59.015 33.333 0.00 0.00 0.00 1.98
3492 5310 7.324935 TGTTTATTGCTTACTCGTGGATTAGA 58.675 34.615 0.00 0.00 0.00 2.10
3493 5311 7.534085 TGTTTATTGCTTACTCGTGGATTAG 57.466 36.000 0.00 0.00 0.00 1.73
3494 5312 7.011950 CCATGTTTATTGCTTACTCGTGGATTA 59.988 37.037 0.00 0.00 0.00 1.75
3495 5313 6.183360 CCATGTTTATTGCTTACTCGTGGATT 60.183 38.462 0.00 0.00 0.00 3.01
3496 5314 5.296780 CCATGTTTATTGCTTACTCGTGGAT 59.703 40.000 0.00 0.00 0.00 3.41
3497 5315 4.634004 CCATGTTTATTGCTTACTCGTGGA 59.366 41.667 0.00 0.00 0.00 4.02
3498 5316 4.730613 GCCATGTTTATTGCTTACTCGTGG 60.731 45.833 0.00 0.00 0.00 4.94
3499 5317 4.342772 GCCATGTTTATTGCTTACTCGTG 58.657 43.478 0.00 0.00 0.00 4.35
3500 5318 3.063452 CGCCATGTTTATTGCTTACTCGT 59.937 43.478 0.00 0.00 0.00 4.18
3501 5319 3.308595 TCGCCATGTTTATTGCTTACTCG 59.691 43.478 0.00 0.00 0.00 4.18
3502 5320 4.875544 TCGCCATGTTTATTGCTTACTC 57.124 40.909 0.00 0.00 0.00 2.59
3503 5321 5.835113 ATTCGCCATGTTTATTGCTTACT 57.165 34.783 0.00 0.00 0.00 2.24
3504 5322 5.619607 CGTATTCGCCATGTTTATTGCTTAC 59.380 40.000 0.00 0.00 0.00 2.34
3505 5323 5.277586 CCGTATTCGCCATGTTTATTGCTTA 60.278 40.000 0.00 0.00 35.54 3.09
3506 5324 4.497340 CCGTATTCGCCATGTTTATTGCTT 60.497 41.667 0.00 0.00 35.54 3.91
3507 5325 3.003275 CCGTATTCGCCATGTTTATTGCT 59.997 43.478 0.00 0.00 35.54 3.91
3508 5326 3.242936 ACCGTATTCGCCATGTTTATTGC 60.243 43.478 0.00 0.00 35.54 3.56
3509 5327 4.545823 ACCGTATTCGCCATGTTTATTG 57.454 40.909 0.00 0.00 35.54 1.90
3510 5328 5.334569 GCATACCGTATTCGCCATGTTTATT 60.335 40.000 0.00 0.00 35.54 1.40
3511 5329 4.153475 GCATACCGTATTCGCCATGTTTAT 59.847 41.667 0.00 0.00 35.54 1.40
3512 5330 3.495377 GCATACCGTATTCGCCATGTTTA 59.505 43.478 0.00 0.00 35.54 2.01
3513 5331 2.289547 GCATACCGTATTCGCCATGTTT 59.710 45.455 0.00 0.00 35.54 2.83
3514 5332 1.871039 GCATACCGTATTCGCCATGTT 59.129 47.619 0.00 0.00 35.54 2.71
3515 5333 1.202592 TGCATACCGTATTCGCCATGT 60.203 47.619 0.00 0.00 35.54 3.21
3516 5334 1.507562 TGCATACCGTATTCGCCATG 58.492 50.000 0.00 0.00 35.54 3.66
3517 5335 2.028112 AGATGCATACCGTATTCGCCAT 60.028 45.455 0.00 0.00 35.54 4.40
3518 5336 1.343142 AGATGCATACCGTATTCGCCA 59.657 47.619 0.00 0.00 35.54 5.69
3519 5337 1.993370 GAGATGCATACCGTATTCGCC 59.007 52.381 0.00 0.00 35.54 5.54
3520 5338 2.672714 TGAGATGCATACCGTATTCGC 58.327 47.619 0.00 0.00 35.54 4.70
3521 5339 4.830015 CATGAGATGCATACCGTATTCG 57.170 45.455 0.00 0.00 34.82 3.34
3534 5352 3.181462 TGCTTAGGTACCAGCATGAGATG 60.181 47.826 20.10 0.00 39.82 2.90
3535 5353 3.041211 TGCTTAGGTACCAGCATGAGAT 58.959 45.455 20.10 0.00 39.82 2.75
3536 5354 2.466846 TGCTTAGGTACCAGCATGAGA 58.533 47.619 20.10 0.69 39.82 3.27
3537 5355 2.988010 TGCTTAGGTACCAGCATGAG 57.012 50.000 20.10 4.79 39.82 2.90
3542 5360 2.555199 CTCACATGCTTAGGTACCAGC 58.445 52.381 15.94 15.78 35.86 4.85
3543 5361 2.093500 TGCTCACATGCTTAGGTACCAG 60.093 50.000 15.94 4.61 0.00 4.00
3544 5362 1.905894 TGCTCACATGCTTAGGTACCA 59.094 47.619 15.94 0.00 0.00 3.25
3545 5363 2.280628 GTGCTCACATGCTTAGGTACC 58.719 52.381 2.73 2.73 0.00 3.34
3546 5364 1.927174 CGTGCTCACATGCTTAGGTAC 59.073 52.381 0.00 0.00 0.00 3.34
3547 5365 1.548719 ACGTGCTCACATGCTTAGGTA 59.451 47.619 0.00 0.00 36.15 3.08
3548 5366 0.321671 ACGTGCTCACATGCTTAGGT 59.678 50.000 0.00 0.00 36.15 3.08
3549 5367 1.927174 GTACGTGCTCACATGCTTAGG 59.073 52.381 0.00 0.00 36.15 2.69
3550 5368 2.600420 CTGTACGTGCTCACATGCTTAG 59.400 50.000 4.97 0.00 36.15 2.18
3551 5369 2.029380 ACTGTACGTGCTCACATGCTTA 60.029 45.455 4.97 0.00 36.15 3.09
3552 5370 1.270305 ACTGTACGTGCTCACATGCTT 60.270 47.619 4.97 0.00 36.15 3.91
3553 5371 0.318441 ACTGTACGTGCTCACATGCT 59.682 50.000 4.97 0.00 36.15 3.79
3554 5372 1.654105 GTACTGTACGTGCTCACATGC 59.346 52.381 4.97 0.00 36.15 4.06
3555 5373 2.941428 TGTACTGTACGTGCTCACATG 58.059 47.619 12.87 0.00 38.85 3.21
3556 5374 3.868757 ATGTACTGTACGTGCTCACAT 57.131 42.857 11.69 8.56 0.00 3.21
3557 5375 4.004982 TCTATGTACTGTACGTGCTCACA 58.995 43.478 20.13 6.60 0.00 3.58
3558 5376 4.611310 TCTATGTACTGTACGTGCTCAC 57.389 45.455 20.13 0.85 0.00 3.51
3559 5377 4.142534 GGTTCTATGTACTGTACGTGCTCA 60.143 45.833 20.13 2.23 0.00 4.26
3560 5378 4.142534 TGGTTCTATGTACTGTACGTGCTC 60.143 45.833 20.13 9.37 0.00 4.26
3561 5379 3.760151 TGGTTCTATGTACTGTACGTGCT 59.240 43.478 20.13 5.44 0.00 4.40
3562 5380 4.100707 TGGTTCTATGTACTGTACGTGC 57.899 45.455 20.13 0.00 0.00 5.34
3563 5381 6.421501 TGTTTTGGTTCTATGTACTGTACGTG 59.578 38.462 20.13 11.47 0.00 4.49
3564 5382 6.514947 TGTTTTGGTTCTATGTACTGTACGT 58.485 36.000 16.21 16.21 0.00 3.57
3565 5383 7.544566 AGATGTTTTGGTTCTATGTACTGTACG 59.455 37.037 12.87 0.00 0.00 3.67
3566 5384 8.773404 AGATGTTTTGGTTCTATGTACTGTAC 57.227 34.615 10.98 10.98 0.00 2.90
3568 5386 9.383519 CATAGATGTTTTGGTTCTATGTACTGT 57.616 33.333 9.83 0.00 41.96 3.55
3569 5387 9.599866 TCATAGATGTTTTGGTTCTATGTACTG 57.400 33.333 15.15 0.00 44.88 2.74
3572 5390 9.952030 TGTTCATAGATGTTTTGGTTCTATGTA 57.048 29.630 15.15 6.70 44.88 2.29
3573 5391 8.862325 TGTTCATAGATGTTTTGGTTCTATGT 57.138 30.769 15.15 0.00 44.88 2.29
3574 5392 9.559958 GTTGTTCATAGATGTTTTGGTTCTATG 57.440 33.333 11.23 11.23 45.50 2.23
3575 5393 9.295825 TGTTGTTCATAGATGTTTTGGTTCTAT 57.704 29.630 0.00 0.00 33.92 1.98
3576 5394 8.684386 TGTTGTTCATAGATGTTTTGGTTCTA 57.316 30.769 0.00 0.00 0.00 2.10
3577 5395 7.581213 TGTTGTTCATAGATGTTTTGGTTCT 57.419 32.000 0.00 0.00 0.00 3.01
3585 5403 9.151471 GCCGTATATATGTTGTTCATAGATGTT 57.849 33.333 0.00 0.00 40.03 2.71
3586 5404 8.531982 AGCCGTATATATGTTGTTCATAGATGT 58.468 33.333 0.00 0.00 40.03 3.06
3587 5405 8.932945 AGCCGTATATATGTTGTTCATAGATG 57.067 34.615 0.00 0.00 40.03 2.90
3589 5407 8.188799 GCTAGCCGTATATATGTTGTTCATAGA 58.811 37.037 2.29 0.00 41.55 1.98
3590 5408 7.973944 TGCTAGCCGTATATATGTTGTTCATAG 59.026 37.037 13.29 0.00 41.55 2.23
3591 5409 7.758076 GTGCTAGCCGTATATATGTTGTTCATA 59.242 37.037 13.29 0.00 42.30 2.15
3592 5410 6.590292 GTGCTAGCCGTATATATGTTGTTCAT 59.410 38.462 13.29 0.00 40.25 2.57
3593 5411 5.924254 GTGCTAGCCGTATATATGTTGTTCA 59.076 40.000 13.29 0.00 0.00 3.18
3594 5412 5.924254 TGTGCTAGCCGTATATATGTTGTTC 59.076 40.000 13.29 0.00 0.00 3.18
3595 5413 5.849510 TGTGCTAGCCGTATATATGTTGTT 58.150 37.500 13.29 0.00 0.00 2.83
3596 5414 5.462530 TGTGCTAGCCGTATATATGTTGT 57.537 39.130 13.29 0.00 0.00 3.32
3597 5415 5.869344 ACATGTGCTAGCCGTATATATGTTG 59.131 40.000 13.29 0.00 0.00 3.33
3598 5416 6.037786 ACATGTGCTAGCCGTATATATGTT 57.962 37.500 13.29 0.00 0.00 2.71
3599 5417 5.394224 GGACATGTGCTAGCCGTATATATGT 60.394 44.000 13.29 12.67 0.00 2.29
3600 5418 5.043903 GGACATGTGCTAGCCGTATATATG 58.956 45.833 13.29 9.49 0.00 1.78
3601 5419 4.202020 CGGACATGTGCTAGCCGTATATAT 60.202 45.833 15.82 0.00 37.35 0.86
3602 5420 3.128068 CGGACATGTGCTAGCCGTATATA 59.872 47.826 15.82 0.00 37.35 0.86
3603 5421 2.094700 CGGACATGTGCTAGCCGTATAT 60.095 50.000 15.82 0.00 37.35 0.86
3604 5422 1.268625 CGGACATGTGCTAGCCGTATA 59.731 52.381 15.82 0.00 37.35 1.47
3605 5423 0.032130 CGGACATGTGCTAGCCGTAT 59.968 55.000 15.82 0.69 37.35 3.06
3606 5424 1.033202 TCGGACATGTGCTAGCCGTA 61.033 55.000 18.97 6.82 42.40 4.02
3607 5425 2.184322 CGGACATGTGCTAGCCGT 59.816 61.111 15.82 3.97 37.35 5.68
3608 5426 1.589993 CTCGGACATGTGCTAGCCG 60.590 63.158 15.82 15.33 43.11 5.52
3609 5427 0.744874 TACTCGGACATGTGCTAGCC 59.255 55.000 17.21 4.74 0.00 3.93
3610 5428 2.579207 TTACTCGGACATGTGCTAGC 57.421 50.000 17.21 8.10 0.00 3.42
3611 5429 4.682787 TCATTTACTCGGACATGTGCTAG 58.317 43.478 15.95 15.95 0.00 3.42
3612 5430 4.441495 CCTCATTTACTCGGACATGTGCTA 60.441 45.833 15.82 3.38 0.00 3.49
3613 5431 3.525537 CTCATTTACTCGGACATGTGCT 58.474 45.455 15.82 0.00 0.00 4.40
3614 5432 2.609459 CCTCATTTACTCGGACATGTGC 59.391 50.000 1.15 4.73 0.00 4.57
3615 5433 3.118775 TCCCTCATTTACTCGGACATGTG 60.119 47.826 1.15 0.00 0.00 3.21
3616 5434 3.104512 TCCCTCATTTACTCGGACATGT 58.895 45.455 0.00 0.00 0.00 3.21
3617 5435 3.819564 TCCCTCATTTACTCGGACATG 57.180 47.619 0.00 0.00 0.00 3.21
3618 5436 3.967326 TCATCCCTCATTTACTCGGACAT 59.033 43.478 0.00 0.00 0.00 3.06
3619 5437 3.371034 TCATCCCTCATTTACTCGGACA 58.629 45.455 0.00 0.00 0.00 4.02
3620 5438 4.120589 GTTCATCCCTCATTTACTCGGAC 58.879 47.826 0.00 0.00 0.00 4.79
3621 5439 3.772572 TGTTCATCCCTCATTTACTCGGA 59.227 43.478 0.00 0.00 0.00 4.55
3622 5440 4.122776 CTGTTCATCCCTCATTTACTCGG 58.877 47.826 0.00 0.00 0.00 4.63
3623 5441 5.011090 TCTGTTCATCCCTCATTTACTCG 57.989 43.478 0.00 0.00 0.00 4.18
3624 5442 6.586344 TGATCTGTTCATCCCTCATTTACTC 58.414 40.000 0.00 0.00 0.00 2.59
3625 5443 6.566079 TGATCTGTTCATCCCTCATTTACT 57.434 37.500 0.00 0.00 0.00 2.24
3626 5444 7.389053 GGTATGATCTGTTCATCCCTCATTTAC 59.611 40.741 4.57 0.00 44.13 2.01
3627 5445 7.072328 TGGTATGATCTGTTCATCCCTCATTTA 59.928 37.037 10.50 0.00 44.13 1.40
3628 5446 6.126390 TGGTATGATCTGTTCATCCCTCATTT 60.126 38.462 10.50 0.00 44.13 2.32
3629 5447 5.370584 TGGTATGATCTGTTCATCCCTCATT 59.629 40.000 10.50 0.00 44.13 2.57
3630 5448 4.909695 TGGTATGATCTGTTCATCCCTCAT 59.090 41.667 10.50 0.00 44.13 2.90
3631 5449 4.297768 TGGTATGATCTGTTCATCCCTCA 58.702 43.478 10.50 2.36 44.13 3.86
3632 5450 4.963318 TGGTATGATCTGTTCATCCCTC 57.037 45.455 10.50 0.78 44.13 4.30
3633 5451 4.288105 GGATGGTATGATCTGTTCATCCCT 59.712 45.833 19.00 4.35 44.13 4.20
3634 5452 4.583871 GGATGGTATGATCTGTTCATCCC 58.416 47.826 19.00 4.25 44.13 3.85
3635 5453 4.248859 CGGATGGTATGATCTGTTCATCC 58.751 47.826 19.42 19.42 44.13 3.51
3636 5454 4.248859 CCGGATGGTATGATCTGTTCATC 58.751 47.826 0.00 3.12 44.13 2.92
3637 5455 4.277515 CCGGATGGTATGATCTGTTCAT 57.722 45.455 0.00 6.48 46.86 2.57
3638 5456 3.751479 CCGGATGGTATGATCTGTTCA 57.249 47.619 0.00 0.00 39.12 3.18
3651 5469 2.203209 GCCTGGCTAACCGGATGG 60.203 66.667 9.46 0.00 46.41 3.51
3652 5470 2.203209 GGCCTGGCTAACCGGATG 60.203 66.667 19.68 0.00 46.41 3.51
3653 5471 2.305607 TTGGCCTGGCTAACCGGAT 61.306 57.895 19.68 0.00 46.41 4.18
3654 5472 2.931105 TTGGCCTGGCTAACCGGA 60.931 61.111 19.68 0.00 46.41 5.14
3655 5473 2.750237 GTTGGCCTGGCTAACCGG 60.750 66.667 30.83 0.00 42.72 5.28
3656 5474 3.124921 CGTTGGCCTGGCTAACCG 61.125 66.667 33.25 25.63 45.03 4.44
3657 5475 3.440415 GCGTTGGCCTGGCTAACC 61.440 66.667 33.25 24.36 45.03 2.85
3658 5476 3.799755 CGCGTTGGCCTGGCTAAC 61.800 66.667 31.04 31.04 44.53 2.34
3695 5513 4.394078 TCACGAACGACGCCGAGG 62.394 66.667 15.53 8.24 46.94 4.63
3696 5514 3.164011 GTCACGAACGACGCCGAG 61.164 66.667 15.53 8.82 46.94 4.63
3697 5515 4.688419 GGTCACGAACGACGCCGA 62.688 66.667 15.53 0.00 46.94 5.54
3698 5516 4.695231 AGGTCACGAACGACGCCG 62.695 66.667 8.41 8.41 46.94 6.46
3699 5517 2.355481 AAGGTCACGAACGACGCC 60.355 61.111 0.14 0.06 46.94 5.68
3700 5518 0.938168 AAGAAGGTCACGAACGACGC 60.938 55.000 0.14 0.00 46.94 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.