Multiple sequence alignment - TraesCS3D01G185100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G185100 chr3D 100.000 3811 0 0 1 3811 170657585 170661395 0.000000e+00 7038
1 TraesCS3D01G185100 chr3D 89.468 864 74 13 1932 2789 170558159 170557307 0.000000e+00 1075
2 TraesCS3D01G185100 chr3D 88.605 588 67 0 2202 2789 170564231 170563644 0.000000e+00 715
3 TraesCS3D01G185100 chr3D 93.151 292 16 2 1043 1334 170558820 170558533 3.520000e-115 425
4 TraesCS3D01G185100 chr3D 89.049 347 24 10 1039 1377 170565212 170564872 5.890000e-113 418
5 TraesCS3D01G185100 chr3D 89.048 210 23 0 1925 2134 170564546 170564337 1.050000e-65 261
6 TraesCS3D01G185100 chr3B 93.318 1691 60 21 523 2177 246127352 246129025 0.000000e+00 2447
7 TraesCS3D01G185100 chr3B 89.541 1090 52 29 2174 3222 246129306 246130374 0.000000e+00 1325
8 TraesCS3D01G185100 chr3B 92.881 590 42 0 2200 2789 245963882 245963293 0.000000e+00 857
9 TraesCS3D01G185100 chr3B 88.225 586 69 0 2202 2787 245969581 245968996 0.000000e+00 701
10 TraesCS3D01G185100 chr3B 87.973 582 70 0 2202 2783 246146565 246147146 0.000000e+00 688
11 TraesCS3D01G185100 chr3B 89.610 385 28 10 961 1337 245964861 245964481 2.660000e-131 479
12 TraesCS3D01G185100 chr3B 89.944 358 17 9 98 438 246119010 246119365 9.710000e-121 444
13 TraesCS3D01G185100 chr3B 87.919 298 28 6 1032 1324 245970573 245970279 1.010000e-90 344
14 TraesCS3D01G185100 chr3B 94.170 223 6 2 3419 3634 246130401 246130623 2.190000e-87 333
15 TraesCS3D01G185100 chr3B 95.122 205 9 1 1932 2135 245964145 245963941 4.750000e-84 322
16 TraesCS3D01G185100 chr3B 89.352 216 23 0 1919 2134 245969902 245969687 4.850000e-69 272
17 TraesCS3D01G185100 chr3B 91.444 187 13 3 3233 3418 786911618 786911802 1.760000e-63 254
18 TraesCS3D01G185100 chr3B 93.069 101 7 0 1 101 426124186 426124086 8.530000e-32 148
19 TraesCS3D01G185100 chr3B 92.308 91 3 4 3724 3811 101312427 101312516 4.000000e-25 126
20 TraesCS3D01G185100 chr3B 90.526 95 6 1 425 519 246127145 246127236 5.170000e-24 122
21 TraesCS3D01G185100 chr3B 89.157 83 8 1 3653 3734 246130684 246130766 6.740000e-18 102
22 TraesCS3D01G185100 chr3A 90.756 1785 69 41 1485 3222 208221508 208223243 0.000000e+00 2294
23 TraesCS3D01G185100 chr3A 89.984 1268 79 31 98 1334 208220257 208221507 0.000000e+00 1594
24 TraesCS3D01G185100 chr3A 88.568 866 86 8 1932 2789 208086395 208085535 0.000000e+00 1038
25 TraesCS3D01G185100 chr3A 89.116 588 64 0 2202 2789 208089570 208088983 0.000000e+00 732
26 TraesCS3D01G185100 chr3A 96.875 256 8 0 1082 1337 208087002 208086747 2.720000e-116 429
27 TraesCS3D01G185100 chr3A 90.508 295 20 6 1032 1324 208090567 208090279 2.150000e-102 383
28 TraesCS3D01G185100 chr3A 88.095 210 25 0 1925 2134 208089883 208089674 2.270000e-62 250
29 TraesCS3D01G185100 chr3A 97.500 80 2 0 3732 3811 206588468 206588547 1.850000e-28 137
30 TraesCS3D01G185100 chr3A 91.489 94 5 2 3718 3811 730804067 730804157 4.000000e-25 126
31 TraesCS3D01G185100 chr4D 91.579 190 13 3 3230 3418 3288522 3288335 3.780000e-65 259
32 TraesCS3D01G185100 chr7D 91.351 185 13 3 3234 3418 37750432 37750613 2.270000e-62 250
33 TraesCS3D01G185100 chr6B 90.374 187 15 3 3232 3418 696922436 696922619 3.800000e-60 243
34 TraesCS3D01G185100 chr6B 88.832 197 16 6 3223 3418 49310552 49310743 1.770000e-58 237
35 TraesCS3D01G185100 chr6B 91.262 103 9 0 1 103 553269429 553269327 1.430000e-29 141
36 TraesCS3D01G185100 chr6B 91.089 101 9 0 1 101 704954232 704954332 1.850000e-28 137
37 TraesCS3D01G185100 chr6B 89.691 97 8 2 2018 2113 147056480 147056575 5.170000e-24 122
38 TraesCS3D01G185100 chr2D 89.947 189 17 2 3230 3418 306338866 306339052 3.800000e-60 243
39 TraesCS3D01G185100 chr2D 97.436 78 2 0 3734 3811 125439254 125439177 2.390000e-27 134
40 TraesCS3D01G185100 chr1A 90.323 186 16 2 3233 3418 551160684 551160501 3.800000e-60 243
41 TraesCS3D01G185100 chr2B 90.217 184 16 2 3235 3418 748501116 748500935 4.920000e-59 239
42 TraesCS3D01G185100 chr2B 93.684 95 6 0 1 95 620604730 620604824 3.970000e-30 143
43 TraesCS3D01G185100 chr2B 89.091 110 12 0 1 110 223099216 223099107 1.850000e-28 137
44 TraesCS3D01G185100 chr7B 89.674 184 13 4 3235 3418 645382748 645382925 2.960000e-56 230
45 TraesCS3D01G185100 chr7B 97.468 79 2 0 3733 3811 633674614 633674536 6.640000e-28 135
46 TraesCS3D01G185100 chr5B 90.435 115 9 2 1 115 507803825 507803713 2.370000e-32 150
47 TraesCS3D01G185100 chr5B 93.684 95 6 0 1 95 379309514 379309608 3.970000e-30 143
48 TraesCS3D01G185100 chr5B 90.291 103 10 0 1 103 655145308 655145206 6.640000e-28 135
49 TraesCS3D01G185100 chr1B 94.737 95 5 0 1 95 2406531 2406625 8.530000e-32 148
50 TraesCS3D01G185100 chr1B 96.386 83 2 1 3729 3811 297475507 297475588 6.640000e-28 135
51 TraesCS3D01G185100 chr5A 96.386 83 2 1 3729 3811 665445579 665445660 6.640000e-28 135
52 TraesCS3D01G185100 chr5A 91.000 100 6 2 3715 3811 502785580 502785679 8.590000e-27 132
53 TraesCS3D01G185100 chr6A 96.250 80 2 1 3732 3811 31260002 31259924 3.090000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G185100 chr3D 170657585 170661395 3810 False 7038.000000 7038 100.000000 1 3811 1 chr3D.!!$F1 3810
1 TraesCS3D01G185100 chr3D 170557307 170558820 1513 True 750.000000 1075 91.309500 1043 2789 2 chr3D.!!$R1 1746
2 TraesCS3D01G185100 chr3D 170563644 170565212 1568 True 464.666667 715 88.900667 1039 2789 3 chr3D.!!$R2 1750
3 TraesCS3D01G185100 chr3B 246127145 246130766 3621 False 865.800000 2447 91.342400 425 3734 5 chr3B.!!$F5 3309
4 TraesCS3D01G185100 chr3B 246146565 246147146 581 False 688.000000 688 87.973000 2202 2783 1 chr3B.!!$F3 581
5 TraesCS3D01G185100 chr3B 245963293 245964861 1568 True 552.666667 857 92.537667 961 2789 3 chr3B.!!$R2 1828
6 TraesCS3D01G185100 chr3B 245968996 245970573 1577 True 439.000000 701 88.498667 1032 2787 3 chr3B.!!$R3 1755
7 TraesCS3D01G185100 chr3A 208220257 208223243 2986 False 1944.000000 2294 90.370000 98 3222 2 chr3A.!!$F3 3124
8 TraesCS3D01G185100 chr3A 208085535 208090567 5032 True 566.400000 1038 90.632400 1032 2789 5 chr3A.!!$R1 1757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 310 0.250295 TTAGTGTGTGTCTGCCTGCC 60.250 55.0 0.0 0.0 0.00 4.85 F
1359 1541 0.108424 CCTCTCTGCTGTACCAGTGC 60.108 60.0 0.0 0.0 33.43 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1865 2.489938 TTCCTGATACCAAGGTGCAC 57.510 50.0 8.80 8.8 0.0 4.57 R
2906 6773 0.036388 GTTGGGGCTCGATCACAAGA 60.036 55.0 4.15 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.644966 AATACTTGCCGGAGAAATGGA 57.355 42.857 5.05 0.00 0.00 3.41
21 22 3.864789 ATACTTGCCGGAGAAATGGAT 57.135 42.857 5.05 0.00 0.00 3.41
22 23 4.974645 ATACTTGCCGGAGAAATGGATA 57.025 40.909 5.05 0.00 0.00 2.59
23 24 3.644966 ACTTGCCGGAGAAATGGATAA 57.355 42.857 5.05 0.00 0.00 1.75
24 25 3.963129 ACTTGCCGGAGAAATGGATAAA 58.037 40.909 5.05 0.00 0.00 1.40
25 26 4.340617 ACTTGCCGGAGAAATGGATAAAA 58.659 39.130 5.05 0.00 0.00 1.52
26 27 4.770010 ACTTGCCGGAGAAATGGATAAAAA 59.230 37.500 5.05 0.00 0.00 1.94
27 28 5.422012 ACTTGCCGGAGAAATGGATAAAAAT 59.578 36.000 5.05 0.00 0.00 1.82
28 29 5.261209 TGCCGGAGAAATGGATAAAAATG 57.739 39.130 5.05 0.00 0.00 2.32
29 30 4.099266 TGCCGGAGAAATGGATAAAAATGG 59.901 41.667 5.05 0.00 0.00 3.16
30 31 4.501400 GCCGGAGAAATGGATAAAAATGGG 60.501 45.833 5.05 0.00 0.00 4.00
31 32 4.649218 CCGGAGAAATGGATAAAAATGGGT 59.351 41.667 0.00 0.00 0.00 4.51
32 33 5.451798 CCGGAGAAATGGATAAAAATGGGTG 60.452 44.000 0.00 0.00 0.00 4.61
33 34 5.127031 CGGAGAAATGGATAAAAATGGGTGT 59.873 40.000 0.00 0.00 0.00 4.16
34 35 6.340522 GGAGAAATGGATAAAAATGGGTGTG 58.659 40.000 0.00 0.00 0.00 3.82
35 36 6.070824 GGAGAAATGGATAAAAATGGGTGTGT 60.071 38.462 0.00 0.00 0.00 3.72
36 37 6.935167 AGAAATGGATAAAAATGGGTGTGTC 58.065 36.000 0.00 0.00 0.00 3.67
37 38 6.725834 AGAAATGGATAAAAATGGGTGTGTCT 59.274 34.615 0.00 0.00 0.00 3.41
38 39 7.893302 AGAAATGGATAAAAATGGGTGTGTCTA 59.107 33.333 0.00 0.00 0.00 2.59
39 40 7.645058 AATGGATAAAAATGGGTGTGTCTAG 57.355 36.000 0.00 0.00 0.00 2.43
40 41 6.381498 TGGATAAAAATGGGTGTGTCTAGA 57.619 37.500 0.00 0.00 0.00 2.43
41 42 6.785076 TGGATAAAAATGGGTGTGTCTAGAA 58.215 36.000 0.00 0.00 0.00 2.10
42 43 7.410174 TGGATAAAAATGGGTGTGTCTAGAAT 58.590 34.615 0.00 0.00 0.00 2.40
43 44 7.893302 TGGATAAAAATGGGTGTGTCTAGAATT 59.107 33.333 0.00 0.00 0.00 2.17
44 45 9.403583 GGATAAAAATGGGTGTGTCTAGAATTA 57.596 33.333 0.00 0.00 0.00 1.40
49 50 9.927668 AAAATGGGTGTGTCTAGAATTAAATTG 57.072 29.630 0.00 0.00 0.00 2.32
50 51 6.509418 TGGGTGTGTCTAGAATTAAATTGC 57.491 37.500 0.00 0.00 0.00 3.56
51 52 5.123186 TGGGTGTGTCTAGAATTAAATTGCG 59.877 40.000 0.00 0.00 0.00 4.85
52 53 5.123344 GGGTGTGTCTAGAATTAAATTGCGT 59.877 40.000 0.00 0.00 0.00 5.24
53 54 6.248631 GGTGTGTCTAGAATTAAATTGCGTC 58.751 40.000 0.00 0.00 0.00 5.19
54 55 6.092259 GGTGTGTCTAGAATTAAATTGCGTCT 59.908 38.462 0.00 0.00 0.00 4.18
55 56 7.277098 GGTGTGTCTAGAATTAAATTGCGTCTA 59.723 37.037 0.00 0.00 0.00 2.59
56 57 8.321716 GTGTGTCTAGAATTAAATTGCGTCTAG 58.678 37.037 0.00 8.43 39.33 2.43
57 58 8.248253 TGTGTCTAGAATTAAATTGCGTCTAGA 58.752 33.333 11.53 11.53 42.72 2.43
58 59 9.250624 GTGTCTAGAATTAAATTGCGTCTAGAT 57.749 33.333 15.77 0.00 45.12 1.98
64 65 9.209175 AGAATTAAATTGCGTCTAGATACATCC 57.791 33.333 0.00 0.00 0.00 3.51
65 66 8.902540 AATTAAATTGCGTCTAGATACATCCA 57.097 30.769 0.00 0.00 0.00 3.41
66 67 9.507329 AATTAAATTGCGTCTAGATACATCCAT 57.493 29.630 0.00 0.00 0.00 3.41
67 68 8.902540 TTAAATTGCGTCTAGATACATCCATT 57.097 30.769 0.00 0.00 0.00 3.16
68 69 7.426929 AAATTGCGTCTAGATACATCCATTC 57.573 36.000 0.00 0.00 0.00 2.67
69 70 4.521130 TGCGTCTAGATACATCCATTCC 57.479 45.455 0.00 0.00 0.00 3.01
70 71 4.152647 TGCGTCTAGATACATCCATTCCT 58.847 43.478 0.00 0.00 0.00 3.36
71 72 4.588951 TGCGTCTAGATACATCCATTCCTT 59.411 41.667 0.00 0.00 0.00 3.36
72 73 5.164954 GCGTCTAGATACATCCATTCCTTC 58.835 45.833 0.00 0.00 0.00 3.46
73 74 5.394802 CGTCTAGATACATCCATTCCTTCG 58.605 45.833 0.00 0.00 0.00 3.79
74 75 5.181433 CGTCTAGATACATCCATTCCTTCGA 59.819 44.000 0.00 0.00 0.00 3.71
75 76 6.383415 GTCTAGATACATCCATTCCTTCGAC 58.617 44.000 0.00 0.00 0.00 4.20
76 77 6.016192 GTCTAGATACATCCATTCCTTCGACA 60.016 42.308 0.00 0.00 0.00 4.35
77 78 5.614324 AGATACATCCATTCCTTCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
78 79 5.605534 AGATACATCCATTCCTTCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
79 80 3.703001 ACATCCATTCCTTCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
80 81 4.819105 ACATCCATTCCTTCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
81 82 5.359194 ACATCCATTCCTTCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
82 83 5.745227 ACATCCATTCCTTCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
83 84 6.180472 ACATCCATTCCTTCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
84 85 6.659242 ACATCCATTCCTTCGACAAGTATTTT 59.341 34.615 0.00 0.00 0.00 1.82
85 86 6.737254 TCCATTCCTTCGACAAGTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
86 87 5.350365 TCCATTCCTTCGACAAGTATTTTCG 59.650 40.000 0.00 0.00 0.00 3.46
87 88 5.447279 CCATTCCTTCGACAAGTATTTTCGG 60.447 44.000 0.00 0.00 33.50 4.30
88 89 4.524316 TCCTTCGACAAGTATTTTCGGA 57.476 40.909 0.00 0.00 33.50 4.55
89 90 4.240096 TCCTTCGACAAGTATTTTCGGAC 58.760 43.478 0.00 0.00 33.50 4.79
90 91 3.060363 CCTTCGACAAGTATTTTCGGACG 59.940 47.826 0.00 0.00 33.50 4.79
91 92 2.598589 TCGACAAGTATTTTCGGACGG 58.401 47.619 0.00 0.00 33.50 4.79
92 93 2.228582 TCGACAAGTATTTTCGGACGGA 59.771 45.455 0.00 0.00 33.50 4.69
93 94 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
94 95 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
95 96 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
96 97 3.007182 ACAAGTATTTTCGGACGGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
105 106 6.854496 TTTCGGACGGAGGAAATATATTTG 57.146 37.500 15.39 3.50 0.00 2.32
112 113 6.588204 ACGGAGGAAATATATTTGTAGCACA 58.412 36.000 15.39 0.00 0.00 4.57
115 116 7.173218 CGGAGGAAATATATTTGTAGCACATGT 59.827 37.037 15.39 0.00 0.00 3.21
116 117 8.292448 GGAGGAAATATATTTGTAGCACATGTG 58.708 37.037 21.83 21.83 0.00 3.21
141 142 7.278424 TGCTATTCCCTACGTATAAAACAACAC 59.722 37.037 0.00 0.00 0.00 3.32
142 143 7.278424 GCTATTCCCTACGTATAAAACAACACA 59.722 37.037 0.00 0.00 0.00 3.72
171 174 6.572167 TTGTACATCTCACATCAAAATGCA 57.428 33.333 0.00 0.00 36.26 3.96
176 179 6.693466 ACATCTCACATCAAAATGCATTTCA 58.307 32.000 24.28 14.59 36.26 2.69
177 180 7.327975 ACATCTCACATCAAAATGCATTTCAT 58.672 30.769 24.28 16.10 36.26 2.57
178 181 8.471609 ACATCTCACATCAAAATGCATTTCATA 58.528 29.630 24.28 13.21 36.26 2.15
179 182 8.968242 CATCTCACATCAAAATGCATTTCATAG 58.032 33.333 24.28 16.50 36.26 2.23
180 183 8.058667 TCTCACATCAAAATGCATTTCATAGT 57.941 30.769 24.28 17.08 36.26 2.12
181 184 9.176460 TCTCACATCAAAATGCATTTCATAGTA 57.824 29.630 24.28 7.63 36.26 1.82
182 185 9.961265 CTCACATCAAAATGCATTTCATAGTAT 57.039 29.630 24.28 4.82 36.26 2.12
198 201 9.929180 TTTCATAGTATACATCTCTATGTTGGC 57.071 33.333 5.50 0.00 44.07 4.52
211 214 8.592105 TCTCTATGTTGGCTTTTGAATTTTTG 57.408 30.769 0.00 0.00 0.00 2.44
218 221 9.702494 TGTTGGCTTTTGAATTTTTGAAAATTT 57.298 22.222 13.80 4.63 45.70 1.82
227 230 5.687770 ATTTTTGAAAATTTGGGGCTTCG 57.312 34.783 0.00 0.00 35.16 3.79
248 251 2.296190 GTCGAAGCCCAAGAACCAAAAT 59.704 45.455 0.00 0.00 0.00 1.82
249 252 2.556622 TCGAAGCCCAAGAACCAAAATC 59.443 45.455 0.00 0.00 0.00 2.17
251 254 2.702270 AGCCCAAGAACCAAAATCCT 57.298 45.000 0.00 0.00 0.00 3.24
255 258 3.815757 GCCCAAGAACCAAAATCCTCTCT 60.816 47.826 0.00 0.00 0.00 3.10
282 285 5.909610 GCTGCTTGTCACTTGTTACTTTTAG 59.090 40.000 0.00 0.00 0.00 1.85
297 309 1.593196 TTTAGTGTGTGTCTGCCTGC 58.407 50.000 0.00 0.00 0.00 4.85
298 310 0.250295 TTAGTGTGTGTCTGCCTGCC 60.250 55.000 0.00 0.00 0.00 4.85
301 313 3.349006 GTGTGTCTGCCTGCCGTG 61.349 66.667 0.00 0.00 0.00 4.94
337 349 8.452868 AGTTAAAAGGCAATATGGATATACCCA 58.547 33.333 0.00 0.00 41.05 4.51
341 353 3.527665 GGCAATATGGATATACCCAGGGT 59.472 47.826 17.82 17.82 39.97 4.34
346 358 2.600790 TGGATATACCCAGGGTGTACG 58.399 52.381 23.01 0.00 36.19 3.67
357 369 6.183360 TACCCAGGGTGTACGAAAGTATAATG 60.183 42.308 23.01 0.00 42.26 1.90
403 415 4.854291 GTGATGATTCTACGATAAGAGCGG 59.146 45.833 0.00 0.00 0.00 5.52
406 418 5.109662 TGATTCTACGATAAGAGCGGAAG 57.890 43.478 0.00 0.00 0.00 3.46
440 458 5.108742 CGCGAATGATGATTATACGTATCCG 60.109 44.000 12.24 0.00 40.83 4.18
469 490 2.203056 TTGGATGATGGCTCCGCG 60.203 61.111 0.00 0.00 35.41 6.46
514 535 4.060038 AACACGGTCCGGCGGTAG 62.060 66.667 27.32 19.66 0.00 3.18
594 729 1.739562 GTGTTGCTCGAGGCCTGAG 60.740 63.158 12.00 18.49 40.92 3.35
606 741 3.136123 CCTGAGCATGGTTGGCCG 61.136 66.667 0.00 0.00 37.67 6.13
632 768 5.352569 GGGTTAAAGTGAGACATGTGATGAG 59.647 44.000 1.15 0.00 0.00 2.90
699 835 2.618709 GTTTAATCTTCCATGGAGCCCG 59.381 50.000 15.53 5.38 0.00 6.13
700 836 0.764890 TAATCTTCCATGGAGCCCGG 59.235 55.000 15.53 0.00 0.00 5.73
701 837 2.631012 AATCTTCCATGGAGCCCGGC 62.631 60.000 15.53 0.00 0.00 6.13
702 838 4.883354 CTTCCATGGAGCCCGGCC 62.883 72.222 15.53 0.00 0.00 6.13
746 885 3.990469 CAGAGTACTGGTAGCACTTTGTG 59.010 47.826 0.00 0.00 40.14 3.33
806 948 0.523072 CGTTGGAGTTGCTTGATGGG 59.477 55.000 0.00 0.00 0.00 4.00
1079 1254 5.273944 CAAAGCAAAGTAGTTTCCTCACAC 58.726 41.667 0.00 0.00 0.00 3.82
1129 1304 3.602513 CTGGTTGCGCTCTGCCTCT 62.603 63.158 9.73 0.00 45.60 3.69
1359 1541 0.108424 CCTCTCTGCTGTACCAGTGC 60.108 60.000 0.00 0.00 33.43 4.40
1455 1696 2.161831 CAGCGAATTCGTTGCCTCA 58.838 52.632 27.72 0.00 43.01 3.86
1478 1719 7.191551 TCAGATTATTTACTCTACGTTCACCG 58.808 38.462 0.00 0.00 44.03 4.94
1524 1807 3.190744 TGTGTTAGCACTCTTACCTCTCG 59.809 47.826 11.22 0.00 45.44 4.04
1537 1820 3.594603 ACCTCTCGGAACACATAACTG 57.405 47.619 0.00 0.00 0.00 3.16
1548 1831 3.947626 ACACATAACTGAACGTGCAAAC 58.052 40.909 0.00 0.00 32.53 2.93
1679 1973 5.751243 AACTGTTTAACCAGTGATGTGAC 57.249 39.130 6.41 0.00 44.74 3.67
1771 2095 5.187186 AGTCAGTACCGTGATTGATTAACCT 59.813 40.000 0.00 0.00 0.00 3.50
2149 2551 1.331447 GTCACCGTTAAACACCACCAC 59.669 52.381 0.00 0.00 0.00 4.16
2150 2552 0.664224 CACCGTTAAACACCACCACC 59.336 55.000 0.00 0.00 0.00 4.61
2151 2553 0.255318 ACCGTTAAACACCACCACCA 59.745 50.000 0.00 0.00 0.00 4.17
2607 6453 3.710722 AGGGGCCTGCTCAGTTCG 61.711 66.667 0.84 0.00 0.00 3.95
2846 6694 3.622612 GCTTTGTGTGTGCCTTGATTTTT 59.377 39.130 0.00 0.00 0.00 1.94
2940 6807 4.646492 AGCCCCAACTTCATAATTGATCAC 59.354 41.667 0.00 0.00 0.00 3.06
2944 6811 6.317642 CCCCAACTTCATAATTGATCACGTAA 59.682 38.462 0.00 0.00 0.00 3.18
2946 6813 8.240682 CCCAACTTCATAATTGATCACGTAAAA 58.759 33.333 0.00 0.00 0.00 1.52
2947 6814 9.277565 CCAACTTCATAATTGATCACGTAAAAG 57.722 33.333 0.00 2.58 0.00 2.27
2978 6859 4.440250 CGATCGGATCTTAACTTGAGGTGT 60.440 45.833 15.50 0.00 0.00 4.16
2979 6860 4.451629 TCGGATCTTAACTTGAGGTGTC 57.548 45.455 0.00 0.00 0.00 3.67
2980 6861 3.830178 TCGGATCTTAACTTGAGGTGTCA 59.170 43.478 0.00 0.00 0.00 3.58
3032 6916 2.717639 ATACCTACCGACTACCGTGT 57.282 50.000 0.00 0.00 36.31 4.49
3033 6917 3.838244 ATACCTACCGACTACCGTGTA 57.162 47.619 0.00 0.00 36.31 2.90
3034 6918 1.739067 ACCTACCGACTACCGTGTAC 58.261 55.000 0.00 0.00 36.31 2.90
3036 6920 1.936547 CCTACCGACTACCGTGTACTC 59.063 57.143 0.00 0.00 36.31 2.59
3037 6921 2.621338 CTACCGACTACCGTGTACTCA 58.379 52.381 0.00 0.00 36.31 3.41
3038 6922 1.160137 ACCGACTACCGTGTACTCAC 58.840 55.000 0.00 0.00 40.79 3.51
3039 6923 1.271054 ACCGACTACCGTGTACTCACT 60.271 52.381 0.00 0.00 41.89 3.41
3040 6924 1.129998 CCGACTACCGTGTACTCACTG 59.870 57.143 0.00 0.00 41.89 3.66
3041 6925 1.129998 CGACTACCGTGTACTCACTGG 59.870 57.143 0.00 0.00 41.89 4.00
3042 6926 0.886563 ACTACCGTGTACTCACTGGC 59.113 55.000 0.00 0.00 41.89 4.85
3043 6927 0.179171 CTACCGTGTACTCACTGGCG 60.179 60.000 0.00 0.00 41.89 5.69
3044 6928 0.890542 TACCGTGTACTCACTGGCGT 60.891 55.000 0.00 0.00 41.89 5.68
3045 6929 1.733041 CCGTGTACTCACTGGCGTG 60.733 63.158 0.00 3.58 41.89 5.34
3053 6937 4.332637 CACTGGCGTGGCAGTTGC 62.333 66.667 24.42 0.00 37.50 4.17
3075 6975 2.037053 TTCACGTTACCGTCGGGAA 58.963 52.632 17.28 11.30 46.28 3.97
3076 6976 0.387202 TTCACGTTACCGTCGGGAAA 59.613 50.000 11.43 3.65 46.28 3.13
3078 6978 0.508213 CACGTTACCGTCGGGAAAAC 59.492 55.000 11.43 12.72 46.28 2.43
3080 6980 1.611491 ACGTTACCGTCGGGAAAACTA 59.389 47.619 11.43 0.00 46.28 2.24
3081 6981 2.035321 ACGTTACCGTCGGGAAAACTAA 59.965 45.455 11.43 0.00 46.28 2.24
3082 6982 3.253230 CGTTACCGTCGGGAAAACTAAT 58.747 45.455 11.43 0.00 36.97 1.73
3083 6983 3.304293 CGTTACCGTCGGGAAAACTAATC 59.696 47.826 11.43 0.00 36.97 1.75
3084 6984 4.244862 GTTACCGTCGGGAAAACTAATCA 58.755 43.478 11.43 0.00 36.97 2.57
3085 6985 2.968675 ACCGTCGGGAAAACTAATCAG 58.031 47.619 17.28 0.00 36.97 2.90
3086 6986 2.301009 ACCGTCGGGAAAACTAATCAGT 59.699 45.455 17.28 0.00 36.97 3.41
3087 6987 3.511146 ACCGTCGGGAAAACTAATCAGTA 59.489 43.478 17.28 0.00 33.63 2.74
3088 6988 4.110482 CCGTCGGGAAAACTAATCAGTAG 58.890 47.826 2.34 0.00 31.82 2.57
3089 6989 4.110482 CGTCGGGAAAACTAATCAGTAGG 58.890 47.826 0.00 0.00 33.48 3.18
3090 6990 4.142315 CGTCGGGAAAACTAATCAGTAGGA 60.142 45.833 0.00 0.00 33.48 2.94
3091 6991 5.349809 GTCGGGAAAACTAATCAGTAGGAG 58.650 45.833 0.00 0.00 33.48 3.69
3092 6992 5.021458 TCGGGAAAACTAATCAGTAGGAGT 58.979 41.667 0.00 0.00 33.48 3.85
3093 6993 6.096001 GTCGGGAAAACTAATCAGTAGGAGTA 59.904 42.308 0.00 0.00 33.48 2.59
3094 6994 6.320672 TCGGGAAAACTAATCAGTAGGAGTAG 59.679 42.308 0.00 0.00 46.85 2.57
3137 7037 4.864334 GAGCACCTCGCATGGGGG 62.864 72.222 10.21 6.25 46.13 5.40
3157 7057 2.286872 GTCATGTGGAATCTGGCTCAG 58.713 52.381 0.00 0.00 0.00 3.35
3201 7104 3.286329 TGCCAAGCATATGTGTCATCT 57.714 42.857 4.29 0.00 31.71 2.90
3206 7109 4.036027 CCAAGCATATGTGTCATCTTGGTC 59.964 45.833 20.76 0.00 43.20 4.02
3247 7157 7.727578 CTAATAATTAGGGGGTGTTTGGTTT 57.272 36.000 0.00 0.00 0.00 3.27
3248 7158 6.614694 AATAATTAGGGGGTGTTTGGTTTC 57.385 37.500 0.00 0.00 0.00 2.78
3249 7159 3.621682 ATTAGGGGGTGTTTGGTTTCA 57.378 42.857 0.00 0.00 0.00 2.69
3250 7160 2.668144 TAGGGGGTGTTTGGTTTCAG 57.332 50.000 0.00 0.00 0.00 3.02
3251 7161 0.105709 AGGGGGTGTTTGGTTTCAGG 60.106 55.000 0.00 0.00 0.00 3.86
3252 7162 1.118965 GGGGGTGTTTGGTTTCAGGG 61.119 60.000 0.00 0.00 0.00 4.45
3253 7163 0.105913 GGGGTGTTTGGTTTCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
3254 7164 1.037493 GGGTGTTTGGTTTCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
3255 7165 1.411074 GGGTGTTTGGTTTCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
3256 7166 2.384828 GGTGTTTGGTTTCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
3257 7167 2.764010 GGTGTTTGGTTTCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
3258 7168 3.196901 GGTGTTTGGTTTCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
3259 7169 4.323180 GGTGTTTGGTTTCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
3299 7209 4.717279 AAAGTCCCTAGCAAACCTAACA 57.283 40.909 0.00 0.00 0.00 2.41
3300 7210 3.983044 AGTCCCTAGCAAACCTAACAG 57.017 47.619 0.00 0.00 0.00 3.16
3301 7211 2.572104 AGTCCCTAGCAAACCTAACAGG 59.428 50.000 0.00 0.00 42.49 4.00
3302 7212 1.913419 TCCCTAGCAAACCTAACAGGG 59.087 52.381 0.00 0.00 40.58 4.45
3303 7213 1.913419 CCCTAGCAAACCTAACAGGGA 59.087 52.381 0.00 0.00 40.58 4.20
3304 7214 2.092914 CCCTAGCAAACCTAACAGGGAG 60.093 54.545 0.00 0.00 40.58 4.30
3305 7215 2.838202 CCTAGCAAACCTAACAGGGAGA 59.162 50.000 0.00 0.00 40.58 3.71
3306 7216 3.118592 CCTAGCAAACCTAACAGGGAGAG 60.119 52.174 0.00 0.00 40.58 3.20
3307 7217 2.621070 AGCAAACCTAACAGGGAGAGA 58.379 47.619 0.00 0.00 40.58 3.10
3308 7218 2.303311 AGCAAACCTAACAGGGAGAGAC 59.697 50.000 0.00 0.00 40.58 3.36
3309 7219 2.303311 GCAAACCTAACAGGGAGAGACT 59.697 50.000 0.00 0.00 40.58 3.24
3310 7220 3.244596 GCAAACCTAACAGGGAGAGACTT 60.245 47.826 0.00 0.00 40.58 3.01
3311 7221 4.747009 GCAAACCTAACAGGGAGAGACTTT 60.747 45.833 0.00 0.00 40.58 2.66
3312 7222 5.377478 CAAACCTAACAGGGAGAGACTTTT 58.623 41.667 0.00 0.00 40.58 2.27
3313 7223 5.648330 AACCTAACAGGGAGAGACTTTTT 57.352 39.130 0.00 0.00 40.58 1.94
3345 7255 9.689075 CTTTTTGCTAAAAGTTCTTAAAAGCAC 57.311 29.630 20.79 0.00 43.34 4.40
3346 7256 7.764695 TTTGCTAAAAGTTCTTAAAAGCACC 57.235 32.000 12.54 0.00 38.15 5.01
3347 7257 6.709018 TGCTAAAAGTTCTTAAAAGCACCT 57.291 33.333 10.28 0.00 33.84 4.00
3348 7258 6.735130 TGCTAAAAGTTCTTAAAAGCACCTC 58.265 36.000 10.28 0.00 33.84 3.85
3349 7259 6.150318 GCTAAAAGTTCTTAAAAGCACCTCC 58.850 40.000 0.00 0.00 0.00 4.30
3350 7260 6.016192 GCTAAAAGTTCTTAAAAGCACCTCCT 60.016 38.462 0.00 0.00 0.00 3.69
3351 7261 6.791867 AAAAGTTCTTAAAAGCACCTCCTT 57.208 33.333 0.00 0.00 0.00 3.36
3352 7262 7.891498 AAAAGTTCTTAAAAGCACCTCCTTA 57.109 32.000 0.00 0.00 0.00 2.69
3353 7263 7.891498 AAAGTTCTTAAAAGCACCTCCTTAA 57.109 32.000 0.00 0.00 0.00 1.85
3354 7264 7.511959 AAGTTCTTAAAAGCACCTCCTTAAG 57.488 36.000 0.00 0.00 34.21 1.85
3355 7265 6.838382 AGTTCTTAAAAGCACCTCCTTAAGA 58.162 36.000 3.36 0.00 38.16 2.10
3356 7266 6.937465 AGTTCTTAAAAGCACCTCCTTAAGAG 59.063 38.462 3.36 0.00 39.97 2.85
3357 7267 6.435292 TCTTAAAAGCACCTCCTTAAGAGT 57.565 37.500 3.36 0.00 41.47 3.24
3358 7268 7.549147 TCTTAAAAGCACCTCCTTAAGAGTA 57.451 36.000 3.36 0.00 41.47 2.59
3359 7269 8.147244 TCTTAAAAGCACCTCCTTAAGAGTAT 57.853 34.615 3.36 0.00 41.47 2.12
3360 7270 8.603304 TCTTAAAAGCACCTCCTTAAGAGTATT 58.397 33.333 3.36 0.00 41.47 1.89
3361 7271 9.232473 CTTAAAAGCACCTCCTTAAGAGTATTT 57.768 33.333 3.36 4.32 41.47 1.40
3362 7272 9.582648 TTAAAAGCACCTCCTTAAGAGTATTTT 57.417 29.630 3.36 10.67 41.47 1.82
3363 7273 8.478775 AAAAGCACCTCCTTAAGAGTATTTTT 57.521 30.769 3.36 6.20 41.47 1.94
3364 7274 7.689446 AAGCACCTCCTTAAGAGTATTTTTC 57.311 36.000 3.36 0.00 41.47 2.29
3365 7275 6.779860 AGCACCTCCTTAAGAGTATTTTTCA 58.220 36.000 3.36 0.00 41.47 2.69
3366 7276 7.231467 AGCACCTCCTTAAGAGTATTTTTCAA 58.769 34.615 3.36 0.00 41.47 2.69
3367 7277 7.724061 AGCACCTCCTTAAGAGTATTTTTCAAA 59.276 33.333 3.36 0.00 41.47 2.69
3368 7278 8.357402 GCACCTCCTTAAGAGTATTTTTCAAAA 58.643 33.333 3.36 0.00 41.47 2.44
3390 7300 5.798239 AAATCCTAGGGGCTAGAAAAAGT 57.202 39.130 9.46 0.00 36.26 2.66
3391 7301 5.375283 AATCCTAGGGGCTAGAAAAAGTC 57.625 43.478 9.46 0.00 36.26 3.01
3392 7302 3.113043 TCCTAGGGGCTAGAAAAAGTCC 58.887 50.000 9.46 0.00 40.78 3.85
3393 7303 3.116174 CCTAGGGGCTAGAAAAAGTCCT 58.884 50.000 0.00 0.00 41.29 3.85
3394 7304 4.015918 TCCTAGGGGCTAGAAAAAGTCCTA 60.016 45.833 9.46 0.00 41.29 2.94
3395 7305 4.101274 CCTAGGGGCTAGAAAAAGTCCTAC 59.899 50.000 0.00 0.00 41.29 3.18
3396 7306 2.500504 AGGGGCTAGAAAAAGTCCTACG 59.499 50.000 0.00 0.00 41.29 3.51
3397 7307 2.498885 GGGGCTAGAAAAAGTCCTACGA 59.501 50.000 0.00 0.00 41.29 3.43
3398 7308 3.519579 GGGCTAGAAAAAGTCCTACGAC 58.480 50.000 0.00 0.00 38.29 4.34
3411 7321 4.731720 GTCCTACGACTAGAGAACCAAAC 58.268 47.826 0.00 0.00 35.99 2.93
3412 7322 4.217118 GTCCTACGACTAGAGAACCAAACA 59.783 45.833 0.00 0.00 35.99 2.83
3413 7323 4.217118 TCCTACGACTAGAGAACCAAACAC 59.783 45.833 0.00 0.00 0.00 3.32
3414 7324 3.382048 ACGACTAGAGAACCAAACACC 57.618 47.619 0.00 0.00 0.00 4.16
3415 7325 2.696707 ACGACTAGAGAACCAAACACCA 59.303 45.455 0.00 0.00 0.00 4.17
3416 7326 3.057734 CGACTAGAGAACCAAACACCAC 58.942 50.000 0.00 0.00 0.00 4.16
3417 7327 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
3468 7378 0.248784 GGTCGTAGTACGTGGATGCC 60.249 60.000 21.38 11.48 43.14 4.40
3581 7491 2.382746 CGACCACACACGCTGGATG 61.383 63.158 0.00 0.00 32.55 3.51
3582 7492 2.669569 ACCACACACGCTGGATGC 60.670 61.111 0.00 0.00 38.57 3.91
3583 7493 2.669229 CCACACACGCTGGATGCA 60.669 61.111 0.00 0.00 43.06 3.96
3584 7494 2.042259 CCACACACGCTGGATGCAT 61.042 57.895 0.00 0.00 43.06 3.96
3624 7541 0.468029 ACAAGAAAGCCCCACCACTG 60.468 55.000 0.00 0.00 0.00 3.66
3671 7630 3.650139 AGCTCTTTTGCAATGCAGAAAG 58.350 40.909 23.81 23.81 40.61 2.62
3672 7631 2.735134 GCTCTTTTGCAATGCAGAAAGG 59.265 45.455 26.46 21.24 40.61 3.11
3673 7632 3.323243 CTCTTTTGCAATGCAGAAAGGG 58.677 45.455 26.46 23.39 40.61 3.95
3674 7633 2.037511 TCTTTTGCAATGCAGAAAGGGG 59.962 45.455 26.46 12.99 40.61 4.79
3675 7634 1.422531 TTTGCAATGCAGAAAGGGGT 58.577 45.000 8.31 0.00 40.61 4.95
3685 7645 1.221021 GAAAGGGGTAGAGCCACCG 59.779 63.158 0.00 0.00 43.41 4.94
3730 7690 4.158394 ACCATGCATTTAACAAGCACTAGG 59.842 41.667 0.00 0.00 41.60 3.02
3734 7694 5.800296 TGCATTTAACAAGCACTAGGTAGA 58.200 37.500 0.00 0.00 32.55 2.59
3735 7695 6.414732 TGCATTTAACAAGCACTAGGTAGAT 58.585 36.000 0.00 0.00 32.55 1.98
3736 7696 7.561251 TGCATTTAACAAGCACTAGGTAGATA 58.439 34.615 0.00 0.00 32.55 1.98
3737 7697 7.494625 TGCATTTAACAAGCACTAGGTAGATAC 59.505 37.037 0.00 0.00 32.55 2.24
3738 7698 7.711339 GCATTTAACAAGCACTAGGTAGATACT 59.289 37.037 0.00 0.00 0.00 2.12
3739 7699 9.250624 CATTTAACAAGCACTAGGTAGATACTC 57.749 37.037 0.00 0.00 0.00 2.59
3740 7700 5.855740 AACAAGCACTAGGTAGATACTCC 57.144 43.478 0.00 0.00 0.00 3.85
3741 7701 4.216708 ACAAGCACTAGGTAGATACTCCC 58.783 47.826 0.00 0.00 0.00 4.30
3742 7702 4.079096 ACAAGCACTAGGTAGATACTCCCT 60.079 45.833 0.00 0.00 0.00 4.20
3743 7703 4.376225 AGCACTAGGTAGATACTCCCTC 57.624 50.000 0.00 0.00 0.00 4.30
3744 7704 3.074836 AGCACTAGGTAGATACTCCCTCC 59.925 52.174 0.00 0.00 0.00 4.30
3745 7705 3.677190 CACTAGGTAGATACTCCCTCCG 58.323 54.545 0.00 0.00 0.00 4.63
3746 7706 2.643801 ACTAGGTAGATACTCCCTCCGG 59.356 54.545 0.00 0.00 0.00 5.14
3747 7707 1.532038 AGGTAGATACTCCCTCCGGT 58.468 55.000 0.00 0.00 0.00 5.28
3748 7708 1.424684 AGGTAGATACTCCCTCCGGTC 59.575 57.143 0.00 0.00 0.00 4.79
3749 7709 1.547449 GGTAGATACTCCCTCCGGTCC 60.547 61.905 0.00 0.00 0.00 4.46
3750 7710 1.424684 GTAGATACTCCCTCCGGTCCT 59.575 57.143 0.00 0.00 0.00 3.85
3751 7711 0.935194 AGATACTCCCTCCGGTCCTT 59.065 55.000 0.00 0.00 0.00 3.36
3752 7712 1.291335 AGATACTCCCTCCGGTCCTTT 59.709 52.381 0.00 0.00 0.00 3.11
3753 7713 2.117051 GATACTCCCTCCGGTCCTTTT 58.883 52.381 0.00 0.00 0.00 2.27
3754 7714 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
3755 7715 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3756 7716 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
3757 7717 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
3758 7718 1.626825 TCCCTCCGGTCCTTTTTACTG 59.373 52.381 0.00 0.00 0.00 2.74
3759 7719 1.350019 CCCTCCGGTCCTTTTTACTGT 59.650 52.381 0.00 0.00 0.00 3.55
3760 7720 2.423577 CCTCCGGTCCTTTTTACTGTG 58.576 52.381 0.00 0.00 0.00 3.66
3761 7721 1.804748 CTCCGGTCCTTTTTACTGTGC 59.195 52.381 0.00 0.00 0.00 4.57
3762 7722 1.141254 TCCGGTCCTTTTTACTGTGCA 59.859 47.619 0.00 0.00 0.00 4.57
3763 7723 1.265905 CCGGTCCTTTTTACTGTGCAC 59.734 52.381 10.75 10.75 0.00 4.57
3764 7724 1.944024 CGGTCCTTTTTACTGTGCACA 59.056 47.619 20.37 20.37 0.00 4.57
3765 7725 2.552315 CGGTCCTTTTTACTGTGCACAT 59.448 45.455 22.00 13.04 0.00 3.21
3766 7726 3.004315 CGGTCCTTTTTACTGTGCACATT 59.996 43.478 22.00 17.96 0.00 2.71
3767 7727 4.298332 GGTCCTTTTTACTGTGCACATTG 58.702 43.478 22.00 12.52 0.00 2.82
3768 7728 4.298332 GTCCTTTTTACTGTGCACATTGG 58.702 43.478 22.00 11.71 0.00 3.16
3769 7729 4.037446 GTCCTTTTTACTGTGCACATTGGA 59.963 41.667 22.00 14.00 0.00 3.53
3770 7730 4.832266 TCCTTTTTACTGTGCACATTGGAT 59.168 37.500 22.00 6.47 0.00 3.41
3771 7731 5.304101 TCCTTTTTACTGTGCACATTGGATT 59.696 36.000 22.00 3.38 0.00 3.01
3772 7732 5.990996 CCTTTTTACTGTGCACATTGGATTT 59.009 36.000 22.00 1.59 0.00 2.17
3773 7733 6.073657 CCTTTTTACTGTGCACATTGGATTTG 60.074 38.462 22.00 8.51 0.00 2.32
3774 7734 2.443887 ACTGTGCACATTGGATTTGC 57.556 45.000 22.00 0.00 36.76 3.68
3775 7735 1.001181 ACTGTGCACATTGGATTTGCC 59.999 47.619 22.00 0.00 35.26 4.52
3776 7736 0.038435 TGTGCACATTGGATTTGCCG 60.038 50.000 17.42 0.00 40.66 5.69
3777 7737 0.243365 GTGCACATTGGATTTGCCGA 59.757 50.000 13.17 0.00 40.66 5.54
3778 7738 0.964700 TGCACATTGGATTTGCCGAA 59.035 45.000 0.00 0.00 40.66 4.30
3779 7739 1.342496 TGCACATTGGATTTGCCGAAA 59.658 42.857 0.00 0.00 40.66 3.46
3780 7740 2.224137 TGCACATTGGATTTGCCGAAAA 60.224 40.909 0.00 0.00 40.66 2.29
3781 7741 3.002102 GCACATTGGATTTGCCGAAAAT 58.998 40.909 0.00 0.00 41.33 1.82
3791 7751 4.528531 TTTGCCGAAAATCAAACTTTGC 57.471 36.364 0.00 0.00 0.00 3.68
3792 7752 3.451141 TGCCGAAAATCAAACTTTGCT 57.549 38.095 0.00 0.00 0.00 3.91
3793 7753 4.576216 TGCCGAAAATCAAACTTTGCTA 57.424 36.364 0.00 0.00 0.00 3.49
3794 7754 4.938080 TGCCGAAAATCAAACTTTGCTAA 58.062 34.783 0.00 0.00 0.00 3.09
3795 7755 4.981674 TGCCGAAAATCAAACTTTGCTAAG 59.018 37.500 6.35 6.35 37.40 2.18
3796 7756 4.982295 GCCGAAAATCAAACTTTGCTAAGT 59.018 37.500 7.78 7.78 46.44 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.644966 TCCATTTCTCCGGCAAGTATT 57.355 42.857 0.00 0.00 0.00 1.89
1 2 3.864789 ATCCATTTCTCCGGCAAGTAT 57.135 42.857 0.00 0.00 0.00 2.12
3 4 3.644966 TTATCCATTTCTCCGGCAAGT 57.355 42.857 0.00 0.00 0.00 3.16
4 5 4.981806 TTTTATCCATTTCTCCGGCAAG 57.018 40.909 0.00 0.00 0.00 4.01
6 7 4.099266 CCATTTTTATCCATTTCTCCGGCA 59.901 41.667 0.00 0.00 0.00 5.69
7 8 4.501400 CCCATTTTTATCCATTTCTCCGGC 60.501 45.833 0.00 0.00 0.00 6.13
8 9 4.649218 ACCCATTTTTATCCATTTCTCCGG 59.351 41.667 0.00 0.00 0.00 5.14
9 10 5.127031 ACACCCATTTTTATCCATTTCTCCG 59.873 40.000 0.00 0.00 0.00 4.63
10 11 6.070824 ACACACCCATTTTTATCCATTTCTCC 60.071 38.462 0.00 0.00 0.00 3.71
11 12 6.935167 ACACACCCATTTTTATCCATTTCTC 58.065 36.000 0.00 0.00 0.00 2.87
12 13 6.725834 AGACACACCCATTTTTATCCATTTCT 59.274 34.615 0.00 0.00 0.00 2.52
13 14 6.935167 AGACACACCCATTTTTATCCATTTC 58.065 36.000 0.00 0.00 0.00 2.17
14 15 6.933514 AGACACACCCATTTTTATCCATTT 57.066 33.333 0.00 0.00 0.00 2.32
15 16 7.410174 TCTAGACACACCCATTTTTATCCATT 58.590 34.615 0.00 0.00 0.00 3.16
16 17 6.969043 TCTAGACACACCCATTTTTATCCAT 58.031 36.000 0.00 0.00 0.00 3.41
17 18 6.381498 TCTAGACACACCCATTTTTATCCA 57.619 37.500 0.00 0.00 0.00 3.41
18 19 7.881775 ATTCTAGACACACCCATTTTTATCC 57.118 36.000 0.00 0.00 0.00 2.59
23 24 9.927668 CAATTTAATTCTAGACACACCCATTTT 57.072 29.630 0.00 0.00 0.00 1.82
24 25 8.034804 GCAATTTAATTCTAGACACACCCATTT 58.965 33.333 0.00 0.00 0.00 2.32
25 26 7.547227 GCAATTTAATTCTAGACACACCCATT 58.453 34.615 0.00 0.00 0.00 3.16
26 27 6.183360 CGCAATTTAATTCTAGACACACCCAT 60.183 38.462 0.00 0.00 0.00 4.00
27 28 5.123186 CGCAATTTAATTCTAGACACACCCA 59.877 40.000 0.00 0.00 0.00 4.51
28 29 5.123344 ACGCAATTTAATTCTAGACACACCC 59.877 40.000 0.00 0.00 0.00 4.61
29 30 6.092259 AGACGCAATTTAATTCTAGACACACC 59.908 38.462 0.00 0.00 0.00 4.16
30 31 7.061752 AGACGCAATTTAATTCTAGACACAC 57.938 36.000 0.00 0.00 0.00 3.82
31 32 8.248253 TCTAGACGCAATTTAATTCTAGACACA 58.752 33.333 8.99 0.00 39.77 3.72
32 33 8.630278 TCTAGACGCAATTTAATTCTAGACAC 57.370 34.615 8.99 0.00 39.77 3.67
38 39 9.209175 GGATGTATCTAGACGCAATTTAATTCT 57.791 33.333 0.00 0.00 0.00 2.40
39 40 8.988934 TGGATGTATCTAGACGCAATTTAATTC 58.011 33.333 0.00 0.00 0.00 2.17
40 41 8.902540 TGGATGTATCTAGACGCAATTTAATT 57.097 30.769 0.00 0.00 0.00 1.40
41 42 9.507329 AATGGATGTATCTAGACGCAATTTAAT 57.493 29.630 0.00 0.00 0.00 1.40
42 43 8.902540 AATGGATGTATCTAGACGCAATTTAA 57.097 30.769 0.00 0.00 0.00 1.52
43 44 7.602644 GGAATGGATGTATCTAGACGCAATTTA 59.397 37.037 0.00 0.00 0.00 1.40
44 45 6.428159 GGAATGGATGTATCTAGACGCAATTT 59.572 38.462 0.00 0.00 0.00 1.82
45 46 5.934625 GGAATGGATGTATCTAGACGCAATT 59.065 40.000 0.00 0.00 0.00 2.32
46 47 5.247110 AGGAATGGATGTATCTAGACGCAAT 59.753 40.000 0.00 0.00 0.00 3.56
47 48 4.588951 AGGAATGGATGTATCTAGACGCAA 59.411 41.667 0.00 0.00 0.00 4.85
48 49 4.152647 AGGAATGGATGTATCTAGACGCA 58.847 43.478 0.00 0.00 0.00 5.24
49 50 4.792521 AGGAATGGATGTATCTAGACGC 57.207 45.455 0.00 0.00 0.00 5.19
50 51 5.181433 TCGAAGGAATGGATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
51 52 6.016192 TGTCGAAGGAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 0.00 2.59
52 53 6.068670 TGTCGAAGGAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
53 54 6.332735 TGTCGAAGGAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
54 55 6.323996 ACTTGTCGAAGGAATGGATGTATCTA 59.676 38.462 0.00 0.00 32.95 1.98
55 56 5.129485 ACTTGTCGAAGGAATGGATGTATCT 59.871 40.000 0.00 0.00 32.95 1.98
56 57 5.360591 ACTTGTCGAAGGAATGGATGTATC 58.639 41.667 0.00 0.00 32.95 2.24
57 58 5.359194 ACTTGTCGAAGGAATGGATGTAT 57.641 39.130 0.00 0.00 32.95 2.29
58 59 4.819105 ACTTGTCGAAGGAATGGATGTA 57.181 40.909 0.00 0.00 32.95 2.29
59 60 3.703001 ACTTGTCGAAGGAATGGATGT 57.297 42.857 0.00 0.00 32.95 3.06
60 61 6.683974 AAATACTTGTCGAAGGAATGGATG 57.316 37.500 0.00 0.00 32.95 3.51
61 62 6.037172 CGAAAATACTTGTCGAAGGAATGGAT 59.963 38.462 0.00 0.00 36.92 3.41
62 63 5.350365 CGAAAATACTTGTCGAAGGAATGGA 59.650 40.000 0.00 0.00 36.92 3.41
63 64 5.447279 CCGAAAATACTTGTCGAAGGAATGG 60.447 44.000 1.13 0.00 36.92 3.16
64 65 5.350365 TCCGAAAATACTTGTCGAAGGAATG 59.650 40.000 1.13 0.00 36.92 2.67
65 66 5.350640 GTCCGAAAATACTTGTCGAAGGAAT 59.649 40.000 1.13 0.00 36.92 3.01
66 67 4.687483 GTCCGAAAATACTTGTCGAAGGAA 59.313 41.667 1.13 0.00 36.92 3.36
67 68 4.240096 GTCCGAAAATACTTGTCGAAGGA 58.760 43.478 1.13 0.00 36.92 3.36
68 69 3.060363 CGTCCGAAAATACTTGTCGAAGG 59.940 47.826 1.13 0.00 36.92 3.46
69 70 3.060363 CCGTCCGAAAATACTTGTCGAAG 59.940 47.826 1.13 0.00 36.92 3.79
70 71 2.988493 CCGTCCGAAAATACTTGTCGAA 59.012 45.455 1.13 0.00 36.92 3.71
71 72 2.228582 TCCGTCCGAAAATACTTGTCGA 59.771 45.455 1.13 0.00 36.92 4.20
72 73 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
73 74 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
74 75 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
75 76 3.241067 TCCTCCGTCCGAAAATACTTG 57.759 47.619 0.00 0.00 0.00 3.16
76 77 3.967332 TTCCTCCGTCCGAAAATACTT 57.033 42.857 0.00 0.00 0.00 2.24
77 78 3.967332 TTTCCTCCGTCCGAAAATACT 57.033 42.857 0.00 0.00 0.00 2.12
78 79 8.543862 AATATATTTCCTCCGTCCGAAAATAC 57.456 34.615 0.00 0.00 32.08 1.89
79 80 8.995220 CAAATATATTTCCTCCGTCCGAAAATA 58.005 33.333 7.76 0.00 32.08 1.40
80 81 7.501225 ACAAATATATTTCCTCCGTCCGAAAAT 59.499 33.333 7.76 0.00 32.08 1.82
81 82 6.824704 ACAAATATATTTCCTCCGTCCGAAAA 59.175 34.615 7.76 0.00 32.08 2.29
82 83 6.350906 ACAAATATATTTCCTCCGTCCGAAA 58.649 36.000 7.76 0.00 32.82 3.46
83 84 5.920903 ACAAATATATTTCCTCCGTCCGAA 58.079 37.500 7.76 0.00 0.00 4.30
84 85 5.540400 ACAAATATATTTCCTCCGTCCGA 57.460 39.130 7.76 0.00 0.00 4.55
85 86 5.347907 GCTACAAATATATTTCCTCCGTCCG 59.652 44.000 7.76 0.00 0.00 4.79
86 87 6.147328 GTGCTACAAATATATTTCCTCCGTCC 59.853 42.308 7.76 0.32 0.00 4.79
87 88 6.704493 TGTGCTACAAATATATTTCCTCCGTC 59.296 38.462 7.76 0.00 0.00 4.79
88 89 6.588204 TGTGCTACAAATATATTTCCTCCGT 58.412 36.000 7.76 5.69 0.00 4.69
89 90 7.173218 ACATGTGCTACAAATATATTTCCTCCG 59.827 37.037 7.76 0.00 0.00 4.63
90 91 8.292448 CACATGTGCTACAAATATATTTCCTCC 58.708 37.037 13.94 0.00 0.00 4.30
112 113 7.502696 TGTTTTATACGTAGGGAATAGCACAT 58.497 34.615 0.08 0.00 0.00 3.21
115 116 7.278424 GTGTTGTTTTATACGTAGGGAATAGCA 59.722 37.037 0.08 0.00 0.00 3.49
116 117 7.278424 TGTGTTGTTTTATACGTAGGGAATAGC 59.722 37.037 0.08 0.00 0.00 2.97
177 180 9.764363 CAAAAGCCAACATAGAGATGTATACTA 57.236 33.333 4.17 0.00 45.93 1.82
178 181 8.486210 TCAAAAGCCAACATAGAGATGTATACT 58.514 33.333 4.17 0.00 45.93 2.12
179 182 8.662781 TCAAAAGCCAACATAGAGATGTATAC 57.337 34.615 0.00 0.00 45.93 1.47
180 183 9.851686 ATTCAAAAGCCAACATAGAGATGTATA 57.148 29.630 0.00 0.00 45.93 1.47
181 184 8.757982 ATTCAAAAGCCAACATAGAGATGTAT 57.242 30.769 0.00 0.00 45.93 2.29
182 185 8.579850 AATTCAAAAGCCAACATAGAGATGTA 57.420 30.769 0.00 0.00 45.93 2.29
184 187 8.767478 AAAATTCAAAAGCCAACATAGAGATG 57.233 30.769 0.00 0.00 39.16 2.90
185 188 9.211485 CAAAAATTCAAAAGCCAACATAGAGAT 57.789 29.630 0.00 0.00 0.00 2.75
186 189 8.420222 TCAAAAATTCAAAAGCCAACATAGAGA 58.580 29.630 0.00 0.00 0.00 3.10
191 194 9.872721 AATTTTCAAAAATTCAAAAGCCAACAT 57.127 22.222 7.47 0.00 43.12 2.71
192 195 9.702494 AAATTTTCAAAAATTCAAAAGCCAACA 57.298 22.222 12.48 0.00 45.16 3.33
193 196 9.955310 CAAATTTTCAAAAATTCAAAAGCCAAC 57.045 25.926 12.48 0.00 45.16 3.77
195 198 7.763071 CCCAAATTTTCAAAAATTCAAAAGCCA 59.237 29.630 12.48 0.00 45.16 4.75
196 199 7.224362 CCCCAAATTTTCAAAAATTCAAAAGCC 59.776 33.333 12.48 0.00 45.16 4.35
197 200 7.254387 GCCCCAAATTTTCAAAAATTCAAAAGC 60.254 33.333 12.48 9.27 45.16 3.51
198 201 7.980662 AGCCCCAAATTTTCAAAAATTCAAAAG 59.019 29.630 12.48 4.61 45.16 2.27
211 214 1.538075 TCGACGAAGCCCCAAATTTTC 59.462 47.619 0.00 0.00 0.00 2.29
227 230 1.314730 TTTGGTTCTTGGGCTTCGAC 58.685 50.000 0.00 0.00 0.00 4.20
237 240 4.042684 AGCAGAGAGAGGATTTTGGTTCTT 59.957 41.667 0.00 0.00 0.00 2.52
248 251 0.894141 GACAAGCAGCAGAGAGAGGA 59.106 55.000 0.00 0.00 0.00 3.71
249 252 0.607112 TGACAAGCAGCAGAGAGAGG 59.393 55.000 0.00 0.00 0.00 3.69
251 254 1.336131 AGTGACAAGCAGCAGAGAGA 58.664 50.000 0.00 0.00 0.00 3.10
255 258 2.042686 AACAAGTGACAAGCAGCAGA 57.957 45.000 0.00 0.00 0.00 4.26
282 285 3.349006 CGGCAGGCAGACACACAC 61.349 66.667 0.00 0.00 0.00 3.82
297 309 4.976116 CCTTTTAACTTTCTTGCTTCACGG 59.024 41.667 0.00 0.00 0.00 4.94
298 310 4.441087 GCCTTTTAACTTTCTTGCTTCACG 59.559 41.667 0.00 0.00 0.00 4.35
301 313 8.650714 CATATTGCCTTTTAACTTTCTTGCTTC 58.349 33.333 0.00 0.00 0.00 3.86
337 349 7.356089 TCATCATTATACTTTCGTACACCCT 57.644 36.000 0.00 0.00 0.00 4.34
341 353 6.987992 GGGGTTCATCATTATACTTTCGTACA 59.012 38.462 0.00 0.00 0.00 2.90
346 358 5.617252 TCCGGGGTTCATCATTATACTTTC 58.383 41.667 0.00 0.00 0.00 2.62
357 369 0.748450 TCGTGTATCCGGGGTTCATC 59.252 55.000 0.00 0.00 0.00 2.92
362 374 0.906775 ACAATTCGTGTATCCGGGGT 59.093 50.000 0.00 0.00 39.29 4.95
411 423 2.599739 TAATCATCATTCGCGCATGC 57.400 45.000 14.13 7.91 37.91 4.06
412 424 4.201618 ACGTATAATCATCATTCGCGCATG 60.202 41.667 12.75 12.75 0.00 4.06
413 425 3.926527 ACGTATAATCATCATTCGCGCAT 59.073 39.130 8.75 0.00 0.00 4.73
414 426 3.313690 ACGTATAATCATCATTCGCGCA 58.686 40.909 8.75 0.00 0.00 6.09
415 427 3.972706 ACGTATAATCATCATTCGCGC 57.027 42.857 0.00 0.00 0.00 6.86
416 428 6.186554 GGATACGTATAATCATCATTCGCG 57.813 41.667 8.34 0.00 0.00 5.87
440 458 4.752101 GCCATCATCCAACACATACTACTC 59.248 45.833 0.00 0.00 0.00 2.59
514 535 7.322222 GTGATCAAGCTTACAAATTGCGATATC 59.678 37.037 0.00 0.00 0.00 1.63
521 542 9.016623 CATATGTGTGATCAAGCTTACAAATTG 57.983 33.333 7.83 0.00 0.00 2.32
606 741 3.081804 CACATGTCTCACTTTAACCCCC 58.918 50.000 0.00 0.00 0.00 5.40
632 768 5.684550 TTGCAATATGCTGATCTGTCATC 57.315 39.130 0.00 1.96 45.31 2.92
701 837 3.357079 GTGCGTGCCTTGTCTGGG 61.357 66.667 0.00 0.00 0.00 4.45
702 838 2.591429 TGTGCGTGCCTTGTCTGG 60.591 61.111 0.00 0.00 0.00 3.86
714 850 1.010935 CAGTACTCTGCCAGTGTGCG 61.011 60.000 9.58 1.98 36.43 5.34
746 885 0.813821 CAAGCCAAGGCCTAAAGAGC 59.186 55.000 5.16 4.84 43.17 4.09
788 930 1.815003 CTCCCATCAAGCAACTCCAAC 59.185 52.381 0.00 0.00 0.00 3.77
806 948 6.992063 TCAACTGCTTCCTCAATAATTCTC 57.008 37.500 0.00 0.00 0.00 2.87
1079 1254 0.606401 GGTCGCCATGGATGTATGGG 60.606 60.000 18.40 0.00 46.23 4.00
1129 1304 2.973899 GAGGAGCAGCGGAGACAA 59.026 61.111 0.00 0.00 0.00 3.18
1441 1681 7.920738 AGTAAATAATCTGAGGCAACGAATTC 58.079 34.615 0.00 0.00 46.39 2.17
1446 1686 6.142480 CGTAGAGTAAATAATCTGAGGCAACG 59.858 42.308 0.92 0.00 34.97 4.10
1455 1696 5.975939 GCGGTGAACGTAGAGTAAATAATCT 59.024 40.000 0.00 0.00 46.52 2.40
1478 1719 9.398170 ACATAAAATGCACATCTTAATTATCGC 57.602 29.630 0.00 0.00 0.00 4.58
1524 1807 2.546368 TGCACGTTCAGTTATGTGTTCC 59.454 45.455 0.00 0.00 37.36 3.62
1537 1820 5.507077 TGAAATAGAACAGTTTGCACGTTC 58.493 37.500 8.66 8.66 37.02 3.95
1582 1865 2.489938 TTCCTGATACCAAGGTGCAC 57.510 50.000 8.80 8.80 0.00 4.57
1614 1897 5.105392 CCTCCATGCTCCTAGAGTTCATATC 60.105 48.000 0.00 0.00 31.39 1.63
1679 1973 3.367498 GGCAATGTAGGTAGGCTATCTCG 60.367 52.174 11.33 0.00 0.00 4.04
1771 2095 4.640364 TGCATGGATATCAGCGTTATTCA 58.360 39.130 4.83 0.00 0.00 2.57
1813 2137 3.058160 GGCAGAGGCACATGCGTT 61.058 61.111 0.00 0.00 43.49 4.84
2149 2551 2.747446 CCGGGAATAGAAGTGTTGTTGG 59.253 50.000 0.00 0.00 0.00 3.77
2150 2552 3.408634 ACCGGGAATAGAAGTGTTGTTG 58.591 45.455 6.32 0.00 0.00 3.33
2151 2553 3.782656 ACCGGGAATAGAAGTGTTGTT 57.217 42.857 6.32 0.00 0.00 2.83
2598 6444 1.444553 CACCTCGTCCGAACTGAGC 60.445 63.158 0.00 0.00 0.00 4.26
2604 6450 3.303135 AGCAGCACCTCGTCCGAA 61.303 61.111 0.00 0.00 0.00 4.30
2607 6453 2.433318 GTCAGCAGCACCTCGTCC 60.433 66.667 0.00 0.00 0.00 4.79
2656 6502 2.726912 CACGTCGTTGGCGTACGT 60.727 61.111 17.90 0.00 46.70 3.57
2846 6694 9.528018 CACTTGCTTATTACAAAGAAAGGAAAA 57.472 29.630 8.75 0.00 43.74 2.29
2906 6773 0.036388 GTTGGGGCTCGATCACAAGA 60.036 55.000 4.15 0.00 0.00 3.02
3036 6920 4.332637 GCAACTGCCACGCCAGTG 62.333 66.667 4.96 0.00 44.86 3.66
3080 6980 8.993424 ACCATGAAATTACTACTCCTACTGATT 58.007 33.333 0.00 0.00 0.00 2.57
3081 6981 8.424918 CACCATGAAATTACTACTCCTACTGAT 58.575 37.037 0.00 0.00 0.00 2.90
3082 6982 7.147724 CCACCATGAAATTACTACTCCTACTGA 60.148 40.741 0.00 0.00 0.00 3.41
3083 6983 6.986817 CCACCATGAAATTACTACTCCTACTG 59.013 42.308 0.00 0.00 0.00 2.74
3084 6984 6.672657 ACCACCATGAAATTACTACTCCTACT 59.327 38.462 0.00 0.00 0.00 2.57
3085 6985 6.761714 CACCACCATGAAATTACTACTCCTAC 59.238 42.308 0.00 0.00 0.00 3.18
3086 6986 6.126883 CCACCACCATGAAATTACTACTCCTA 60.127 42.308 0.00 0.00 0.00 2.94
3087 6987 5.339200 CCACCACCATGAAATTACTACTCCT 60.339 44.000 0.00 0.00 0.00 3.69
3088 6988 4.881850 CCACCACCATGAAATTACTACTCC 59.118 45.833 0.00 0.00 0.00 3.85
3089 6989 4.335594 GCCACCACCATGAAATTACTACTC 59.664 45.833 0.00 0.00 0.00 2.59
3090 6990 4.263727 TGCCACCACCATGAAATTACTACT 60.264 41.667 0.00 0.00 0.00 2.57
3091 6991 4.013728 TGCCACCACCATGAAATTACTAC 58.986 43.478 0.00 0.00 0.00 2.73
3092 6992 4.263727 ACTGCCACCACCATGAAATTACTA 60.264 41.667 0.00 0.00 0.00 1.82
3093 6993 3.091545 CTGCCACCACCATGAAATTACT 58.908 45.455 0.00 0.00 0.00 2.24
3094 6994 2.825532 ACTGCCACCACCATGAAATTAC 59.174 45.455 0.00 0.00 0.00 1.89
3095 6995 2.824936 CACTGCCACCACCATGAAATTA 59.175 45.455 0.00 0.00 0.00 1.40
3096 6996 1.619827 CACTGCCACCACCATGAAATT 59.380 47.619 0.00 0.00 0.00 1.82
3097 6997 1.203038 TCACTGCCACCACCATGAAAT 60.203 47.619 0.00 0.00 0.00 2.17
3101 7001 2.338015 GCTCACTGCCACCACCATG 61.338 63.158 0.00 0.00 35.15 3.66
3136 7036 1.065199 TGAGCCAGATTCCACATGACC 60.065 52.381 0.00 0.00 0.00 4.02
3137 7037 2.286872 CTGAGCCAGATTCCACATGAC 58.713 52.381 0.00 0.00 32.44 3.06
3234 7144 0.105913 TCCCTGAAACCAAACACCCC 60.106 55.000 0.00 0.00 0.00 4.95
3235 7145 1.037493 GTCCCTGAAACCAAACACCC 58.963 55.000 0.00 0.00 0.00 4.61
3236 7146 2.067365 AGTCCCTGAAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
3276 7186 5.451354 TGTTAGGTTTGCTAGGGACTTTTT 58.549 37.500 0.00 0.00 41.75 1.94
3277 7187 5.056553 TGTTAGGTTTGCTAGGGACTTTT 57.943 39.130 0.00 0.00 41.75 2.27
3278 7188 4.506802 CCTGTTAGGTTTGCTAGGGACTTT 60.507 45.833 0.00 0.00 41.75 2.66
3279 7189 3.009143 CCTGTTAGGTTTGCTAGGGACTT 59.991 47.826 0.00 0.00 41.75 3.01
3280 7190 2.572104 CCTGTTAGGTTTGCTAGGGACT 59.428 50.000 0.00 0.00 46.37 3.85
3281 7191 2.355818 CCCTGTTAGGTTTGCTAGGGAC 60.356 54.545 0.00 0.00 46.19 4.46
3282 7192 1.913419 CCCTGTTAGGTTTGCTAGGGA 59.087 52.381 0.00 0.00 46.19 4.20
3283 7193 1.913419 TCCCTGTTAGGTTTGCTAGGG 59.087 52.381 0.00 0.00 44.96 3.53
3284 7194 2.838202 TCTCCCTGTTAGGTTTGCTAGG 59.162 50.000 0.00 0.00 31.93 3.02
3285 7195 3.769844 TCTCTCCCTGTTAGGTTTGCTAG 59.230 47.826 0.00 0.00 31.93 3.42
3286 7196 3.514309 GTCTCTCCCTGTTAGGTTTGCTA 59.486 47.826 0.00 0.00 31.93 3.49
3287 7197 2.303311 GTCTCTCCCTGTTAGGTTTGCT 59.697 50.000 0.00 0.00 31.93 3.91
3288 7198 2.303311 AGTCTCTCCCTGTTAGGTTTGC 59.697 50.000 0.00 0.00 31.93 3.68
3289 7199 4.625607 AAGTCTCTCCCTGTTAGGTTTG 57.374 45.455 0.00 0.00 31.93 2.93
3290 7200 5.648330 AAAAGTCTCTCCCTGTTAGGTTT 57.352 39.130 0.00 0.00 31.93 3.27
3291 7201 5.648330 AAAAAGTCTCTCCCTGTTAGGTT 57.352 39.130 0.00 0.00 31.93 3.50
3320 7230 8.661257 GGTGCTTTTAAGAACTTTTAGCAAAAA 58.339 29.630 14.46 5.56 34.81 1.94
3321 7231 8.038351 AGGTGCTTTTAAGAACTTTTAGCAAAA 58.962 29.630 14.46 6.05 34.81 2.44
3322 7232 7.552459 AGGTGCTTTTAAGAACTTTTAGCAAA 58.448 30.769 14.46 0.00 34.81 3.68
3323 7233 7.107639 AGGTGCTTTTAAGAACTTTTAGCAA 57.892 32.000 14.46 0.00 34.81 3.91
3324 7234 6.238925 GGAGGTGCTTTTAAGAACTTTTAGCA 60.239 38.462 0.84 11.11 34.81 3.49
3325 7235 6.016192 AGGAGGTGCTTTTAAGAACTTTTAGC 60.016 38.462 0.84 0.00 34.81 3.09
3326 7236 7.511959 AGGAGGTGCTTTTAAGAACTTTTAG 57.488 36.000 0.84 0.00 34.81 1.85
3327 7237 7.891498 AAGGAGGTGCTTTTAAGAACTTTTA 57.109 32.000 0.84 0.00 34.81 1.52
3328 7238 6.791867 AAGGAGGTGCTTTTAAGAACTTTT 57.208 33.333 0.84 0.00 34.81 2.27
3329 7239 7.778382 TCTTAAGGAGGTGCTTTTAAGAACTTT 59.222 33.333 1.85 0.00 38.49 2.66
3330 7240 7.287810 TCTTAAGGAGGTGCTTTTAAGAACTT 58.712 34.615 1.85 0.00 38.49 2.66
3331 7241 6.838382 TCTTAAGGAGGTGCTTTTAAGAACT 58.162 36.000 1.85 0.00 38.49 3.01
3332 7242 6.711194 ACTCTTAAGGAGGTGCTTTTAAGAAC 59.289 38.462 1.85 0.00 45.83 3.01
3333 7243 6.838382 ACTCTTAAGGAGGTGCTTTTAAGAA 58.162 36.000 1.85 0.00 45.83 2.52
3334 7244 6.435292 ACTCTTAAGGAGGTGCTTTTAAGA 57.565 37.500 1.85 5.68 45.83 2.10
3335 7245 8.794335 AATACTCTTAAGGAGGTGCTTTTAAG 57.206 34.615 1.85 0.00 45.83 1.85
3336 7246 9.582648 AAAATACTCTTAAGGAGGTGCTTTTAA 57.417 29.630 1.85 0.00 45.83 1.52
3337 7247 9.582648 AAAAATACTCTTAAGGAGGTGCTTTTA 57.417 29.630 1.85 0.00 45.83 1.52
3338 7248 8.478775 AAAAATACTCTTAAGGAGGTGCTTTT 57.521 30.769 1.85 7.61 45.83 2.27
3339 7249 7.724061 TGAAAAATACTCTTAAGGAGGTGCTTT 59.276 33.333 1.85 2.90 45.83 3.51
3340 7250 7.231467 TGAAAAATACTCTTAAGGAGGTGCTT 58.769 34.615 1.85 0.00 45.83 3.91
3341 7251 6.779860 TGAAAAATACTCTTAAGGAGGTGCT 58.220 36.000 1.85 0.00 45.83 4.40
3342 7252 7.448748 TTGAAAAATACTCTTAAGGAGGTGC 57.551 36.000 1.85 0.00 45.83 5.01
3366 7276 6.562228 ACTTTTTCTAGCCCCTAGGATTTTT 58.438 36.000 11.48 0.00 35.03 1.94
3367 7277 6.153942 ACTTTTTCTAGCCCCTAGGATTTT 57.846 37.500 11.48 0.00 35.03 1.82
3368 7278 5.340110 GGACTTTTTCTAGCCCCTAGGATTT 60.340 44.000 11.48 0.00 35.03 2.17
3369 7279 4.166337 GGACTTTTTCTAGCCCCTAGGATT 59.834 45.833 11.48 0.00 35.03 3.01
3370 7280 3.717392 GGACTTTTTCTAGCCCCTAGGAT 59.283 47.826 11.48 0.00 35.03 3.24
3371 7281 3.113043 GGACTTTTTCTAGCCCCTAGGA 58.887 50.000 11.48 0.00 35.03 2.94
3372 7282 3.116174 AGGACTTTTTCTAGCCCCTAGG 58.884 50.000 0.06 0.06 35.03 3.02
3373 7283 4.202131 CGTAGGACTTTTTCTAGCCCCTAG 60.202 50.000 0.00 0.00 35.57 3.02
3374 7284 3.703052 CGTAGGACTTTTTCTAGCCCCTA 59.297 47.826 0.00 0.00 0.00 3.53
3375 7285 2.500504 CGTAGGACTTTTTCTAGCCCCT 59.499 50.000 0.00 0.00 0.00 4.79
3376 7286 2.498885 TCGTAGGACTTTTTCTAGCCCC 59.501 50.000 0.00 0.00 0.00 5.80
3377 7287 3.519579 GTCGTAGGACTTTTTCTAGCCC 58.480 50.000 8.31 0.00 40.15 5.19
3389 7299 4.217118 TGTTTGGTTCTCTAGTCGTAGGAC 59.783 45.833 7.49 7.49 43.76 3.85
3390 7300 4.217118 GTGTTTGGTTCTCTAGTCGTAGGA 59.783 45.833 0.00 0.00 0.00 2.94
3391 7301 4.483311 GTGTTTGGTTCTCTAGTCGTAGG 58.517 47.826 0.00 0.00 0.00 3.18
3392 7302 4.022589 TGGTGTTTGGTTCTCTAGTCGTAG 60.023 45.833 0.00 0.00 0.00 3.51
3393 7303 3.890756 TGGTGTTTGGTTCTCTAGTCGTA 59.109 43.478 0.00 0.00 0.00 3.43
3394 7304 2.696707 TGGTGTTTGGTTCTCTAGTCGT 59.303 45.455 0.00 0.00 0.00 4.34
3395 7305 3.057734 GTGGTGTTTGGTTCTCTAGTCG 58.942 50.000 0.00 0.00 0.00 4.18
3396 7306 3.400255 GGTGGTGTTTGGTTCTCTAGTC 58.600 50.000 0.00 0.00 0.00 2.59
3397 7307 2.224209 CGGTGGTGTTTGGTTCTCTAGT 60.224 50.000 0.00 0.00 0.00 2.57
3398 7308 2.224209 ACGGTGGTGTTTGGTTCTCTAG 60.224 50.000 0.00 0.00 0.00 2.43
3399 7309 1.764134 ACGGTGGTGTTTGGTTCTCTA 59.236 47.619 0.00 0.00 0.00 2.43
3400 7310 0.544697 ACGGTGGTGTTTGGTTCTCT 59.455 50.000 0.00 0.00 0.00 3.10
3401 7311 1.385528 AACGGTGGTGTTTGGTTCTC 58.614 50.000 0.00 0.00 0.00 2.87
3402 7312 1.842052 AAACGGTGGTGTTTGGTTCT 58.158 45.000 0.00 0.00 40.40 3.01
3414 7324 2.073816 CTACCTAACCAGCAAACGGTG 58.926 52.381 0.00 0.00 36.67 4.94
3415 7325 1.002773 CCTACCTAACCAGCAAACGGT 59.997 52.381 0.00 0.00 38.85 4.83
3416 7326 1.002773 ACCTACCTAACCAGCAAACGG 59.997 52.381 0.00 0.00 0.00 4.44
3417 7327 2.467566 ACCTACCTAACCAGCAAACG 57.532 50.000 0.00 0.00 0.00 3.60
3574 7484 2.648059 GGATGGGTATATGCATCCAGC 58.352 52.381 0.19 7.21 42.23 4.85
3578 7488 4.103785 AGCTATGGGATGGGTATATGCATC 59.896 45.833 0.19 0.00 0.00 3.91
3581 7491 4.510167 AAGCTATGGGATGGGTATATGC 57.490 45.455 0.00 0.00 0.00 3.14
3582 7492 5.882557 GTGAAAGCTATGGGATGGGTATATG 59.117 44.000 0.00 0.00 0.00 1.78
3583 7493 5.551583 TGTGAAAGCTATGGGATGGGTATAT 59.448 40.000 0.00 0.00 0.00 0.86
3584 7494 4.910913 TGTGAAAGCTATGGGATGGGTATA 59.089 41.667 0.00 0.00 0.00 1.47
3624 7541 5.065704 TCTCTCCGAGCTTATATGAATGC 57.934 43.478 0.00 0.00 0.00 3.56
3646 7587 2.488545 CTGCATTGCAAAAGAGCTCTCT 59.511 45.455 18.55 0.00 38.92 3.10
3650 7591 3.554337 CCTTTCTGCATTGCAAAAGAGCT 60.554 43.478 28.40 0.00 38.41 4.09
3663 7622 0.840288 TGGCTCTACCCCTTTCTGCA 60.840 55.000 0.00 0.00 37.83 4.41
3671 7630 0.392595 CTTTTCGGTGGCTCTACCCC 60.393 60.000 0.00 0.00 37.44 4.95
3672 7631 0.611714 TCTTTTCGGTGGCTCTACCC 59.388 55.000 0.00 0.00 37.44 3.69
3673 7632 2.007547 GCTCTTTTCGGTGGCTCTACC 61.008 57.143 0.00 0.00 37.37 3.18
3674 7633 1.066787 AGCTCTTTTCGGTGGCTCTAC 60.067 52.381 0.00 0.00 0.00 2.59
3675 7634 1.204941 GAGCTCTTTTCGGTGGCTCTA 59.795 52.381 6.43 0.00 43.92 2.43
3685 7645 0.321996 ACCGGGAGTGAGCTCTTTTC 59.678 55.000 16.19 9.44 41.38 2.29
3741 7701 1.804748 GCACAGTAAAAAGGACCGGAG 59.195 52.381 9.46 0.00 0.00 4.63
3742 7702 1.141254 TGCACAGTAAAAAGGACCGGA 59.859 47.619 9.46 0.00 0.00 5.14
3743 7703 1.265905 GTGCACAGTAAAAAGGACCGG 59.734 52.381 13.17 0.00 0.00 5.28
3744 7704 1.944024 TGTGCACAGTAAAAAGGACCG 59.056 47.619 17.42 0.00 0.00 4.79
3745 7705 4.298332 CAATGTGCACAGTAAAAAGGACC 58.702 43.478 25.84 0.00 0.00 4.46
3746 7706 4.037446 TCCAATGTGCACAGTAAAAAGGAC 59.963 41.667 25.84 0.00 0.00 3.85
3747 7707 4.211125 TCCAATGTGCACAGTAAAAAGGA 58.789 39.130 25.84 20.63 0.00 3.36
3748 7708 4.582701 TCCAATGTGCACAGTAAAAAGG 57.417 40.909 25.84 18.67 0.00 3.11
3749 7709 6.564499 GCAAATCCAATGTGCACAGTAAAAAG 60.564 38.462 25.84 10.04 38.19 2.27
3750 7710 5.236047 GCAAATCCAATGTGCACAGTAAAAA 59.764 36.000 25.84 8.92 38.19 1.94
3751 7711 4.749099 GCAAATCCAATGTGCACAGTAAAA 59.251 37.500 25.84 11.43 38.19 1.52
3752 7712 4.305769 GCAAATCCAATGTGCACAGTAAA 58.694 39.130 25.84 13.98 38.19 2.01
3753 7713 3.305950 GGCAAATCCAATGTGCACAGTAA 60.306 43.478 25.84 14.35 40.12 2.24
3754 7714 2.230992 GGCAAATCCAATGTGCACAGTA 59.769 45.455 25.84 9.09 40.12 2.74
3755 7715 1.001181 GGCAAATCCAATGTGCACAGT 59.999 47.619 25.84 20.88 40.12 3.55
3756 7716 1.717194 GGCAAATCCAATGTGCACAG 58.283 50.000 25.84 12.40 40.12 3.66
3757 7717 0.038435 CGGCAAATCCAATGTGCACA 60.038 50.000 24.08 24.08 40.12 4.57
3758 7718 0.243365 TCGGCAAATCCAATGTGCAC 59.757 50.000 10.75 10.75 40.12 4.57
3759 7719 0.964700 TTCGGCAAATCCAATGTGCA 59.035 45.000 4.59 0.00 40.12 4.57
3760 7720 2.077413 TTTCGGCAAATCCAATGTGC 57.923 45.000 0.00 0.00 37.55 4.57
3761 7721 4.845621 GATTTTCGGCAAATCCAATGTG 57.154 40.909 2.22 0.00 43.65 3.21
3769 7729 4.815846 AGCAAAGTTTGATTTTCGGCAAAT 59.184 33.333 19.82 0.00 37.84 2.32
3770 7730 4.187694 AGCAAAGTTTGATTTTCGGCAAA 58.812 34.783 19.82 0.00 0.00 3.68
3771 7731 3.791245 AGCAAAGTTTGATTTTCGGCAA 58.209 36.364 19.82 0.00 0.00 4.52
3772 7732 3.451141 AGCAAAGTTTGATTTTCGGCA 57.549 38.095 19.82 0.00 0.00 5.69
3773 7733 4.982295 ACTTAGCAAAGTTTGATTTTCGGC 59.018 37.500 19.82 0.98 43.60 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.