Multiple sequence alignment - TraesCS3D01G183400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G183400 chr3D 100.000 4603 0 0 1 4603 168189594 168194196 0.000000e+00 8501.0
1 TraesCS3D01G183400 chr3D 88.178 516 50 8 2573 3083 594246405 594246914 5.090000e-169 604.0
2 TraesCS3D01G183400 chr3D 87.111 225 21 7 1 221 478526735 478526955 9.890000e-62 248.0
3 TraesCS3D01G183400 chr3D 85.333 225 26 5 1 221 463124760 463124981 4.630000e-55 226.0
4 TraesCS3D01G183400 chr3D 100.000 30 0 0 508 537 328379373 328379344 6.430000e-04 56.5
5 TraesCS3D01G183400 chr3B 94.568 1436 45 15 639 2050 243243767 243245193 0.000000e+00 2189.0
6 TraesCS3D01G183400 chr3B 97.466 1263 28 2 2608 3867 243245694 243246955 0.000000e+00 2152.0
7 TraesCS3D01G183400 chr3B 90.520 327 31 0 1724 2050 243245193 243245519 2.540000e-117 433.0
8 TraesCS3D01G183400 chr3B 85.174 344 39 10 309 643 243242319 243242659 4.410000e-90 342.0
9 TraesCS3D01G183400 chr3B 93.956 182 11 0 1724 1905 243245519 243245700 4.540000e-70 276.0
10 TraesCS3D01G183400 chr3B 86.404 228 26 4 1 224 400307647 400307421 1.280000e-60 244.0
11 TraesCS3D01G183400 chr3B 82.022 178 27 2 322 499 11459025 11458853 3.710000e-31 147.0
12 TraesCS3D01G183400 chr3B 78.613 173 22 7 339 499 166403874 166403705 2.930000e-17 100.0
13 TraesCS3D01G183400 chr3B 84.810 79 12 0 317 395 441483767 441483689 3.820000e-11 80.5
14 TraesCS3D01G183400 chr3A 96.518 1321 38 4 2554 3867 199695496 199694177 0.000000e+00 2178.0
15 TraesCS3D01G183400 chr3A 95.168 1283 37 10 804 2077 199697370 199696104 0.000000e+00 2002.0
16 TraesCS3D01G183400 chr3A 95.595 454 17 3 2104 2555 199696112 199695660 0.000000e+00 725.0
17 TraesCS3D01G183400 chr3A 85.526 228 29 3 1 224 405973526 405973299 7.700000e-58 235.0
18 TraesCS3D01G183400 chr3A 96.970 33 1 0 504 536 574325103 574325071 6.430000e-04 56.5
19 TraesCS3D01G183400 chr1A 81.257 859 144 15 2769 3621 557191198 557190351 0.000000e+00 678.0
20 TraesCS3D01G183400 chr1A 90.046 432 38 4 1162 1589 557117092 557117522 5.200000e-154 555.0
21 TraesCS3D01G183400 chr1A 87.657 478 43 12 1126 1589 557193060 557192585 4.050000e-150 542.0
22 TraesCS3D01G183400 chr1A 100.000 29 0 0 511 539 558981488 558981460 2.000000e-03 54.7
23 TraesCS3D01G183400 chr1B 83.359 637 106 0 2967 3603 641552135 641552771 1.430000e-164 590.0
24 TraesCS3D01G183400 chr1B 90.909 418 33 4 1162 1575 641550126 641550542 1.450000e-154 556.0
25 TraesCS3D01G183400 chr1B 91.489 47 3 1 431 476 561302028 561302074 3.840000e-06 63.9
26 TraesCS3D01G183400 chr1D 88.445 476 41 10 1127 1589 464835137 464835611 3.110000e-156 562.0
27 TraesCS3D01G183400 chr1D 86.000 100 14 0 1922 2021 427590099 427590000 1.750000e-19 108.0
28 TraesCS3D01G183400 chr1D 96.970 33 1 0 511 543 467523593 467523625 6.430000e-04 56.5
29 TraesCS3D01G183400 chr1D 100.000 29 0 0 509 537 466370188 466370216 2.000000e-03 54.7
30 TraesCS3D01G183400 chr5B 90.291 412 20 4 4194 4603 548977243 548977636 5.280000e-144 521.0
31 TraesCS3D01G183400 chr5B 85.455 110 11 5 1255 1362 263521843 263521737 4.870000e-20 110.0
32 TraesCS3D01G183400 chr4D 84.156 486 65 12 4126 4603 308588327 308588808 1.170000e-125 460.0
33 TraesCS3D01G183400 chr4D 86.486 222 26 3 7 224 342831073 342830852 1.650000e-59 241.0
34 TraesCS3D01G183400 chr5D 79.167 696 99 33 3888 4572 510916858 510916198 1.520000e-119 440.0
35 TraesCS3D01G183400 chr5D 77.778 216 26 15 1153 1362 240084925 240085124 3.760000e-21 113.0
36 TraesCS3D01G183400 chr7D 91.718 326 6 7 4283 4599 634174233 634174546 2.540000e-117 433.0
37 TraesCS3D01G183400 chr7D 98.667 225 2 1 4380 4603 395326298 395326522 9.280000e-107 398.0
38 TraesCS3D01G183400 chr7D 86.222 225 26 2 1 221 588257595 588257818 5.950000e-59 239.0
39 TraesCS3D01G183400 chr7D 93.793 145 5 1 4070 4210 634174091 634174235 1.000000e-51 215.0
40 TraesCS3D01G183400 chr7D 86.207 87 11 1 339 424 95961856 95961770 4.900000e-15 93.5
41 TraesCS3D01G183400 chr7D 82.407 108 17 2 339 445 95967945 95967839 4.900000e-15 93.5
42 TraesCS3D01G183400 chr6B 77.310 736 110 34 3888 4603 4851900 4851202 9.350000e-102 381.0
43 TraesCS3D01G183400 chr5A 77.455 723 108 25 3888 4585 412771583 412772275 9.350000e-102 381.0
44 TraesCS3D01G183400 chr5A 77.348 724 109 25 3887 4585 412776898 412777591 1.210000e-100 377.0
45 TraesCS3D01G183400 chr5A 76.934 724 110 26 3888 4585 412765379 412766071 4.380000e-95 359.0
46 TraesCS3D01G183400 chr5A 75.275 728 117 30 3888 4585 412760768 412761462 5.830000e-74 289.0
47 TraesCS3D01G183400 chr5A 85.714 224 28 3 1 221 455857719 455857941 2.770000e-57 233.0
48 TraesCS3D01G183400 chr5A 83.636 110 13 5 1255 1362 313880091 313879985 1.050000e-16 99.0
49 TraesCS3D01G183400 chr4A 78.530 517 70 19 4116 4603 493975741 493976245 7.480000e-78 302.0
50 TraesCS3D01G183400 chr6D 85.778 225 28 3 1 221 364845809 364846033 7.700000e-58 235.0
51 TraesCS3D01G183400 chr6D 100.000 29 0 0 509 537 65625819 65625791 2.000000e-03 54.7
52 TraesCS3D01G183400 chr2B 85.088 228 28 5 1 224 173759844 173759619 1.290000e-55 228.0
53 TraesCS3D01G183400 chr2D 78.049 164 26 8 318 476 315426163 315426005 1.360000e-15 95.3
54 TraesCS3D01G183400 chr2D 100.000 31 0 0 509 539 101695478 101695508 1.790000e-04 58.4
55 TraesCS3D01G183400 chr7A 94.737 38 0 2 511 547 57610130 57610166 1.790000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G183400 chr3D 168189594 168194196 4602 False 8501.0 8501 100.000000 1 4603 1 chr3D.!!$F1 4602
1 TraesCS3D01G183400 chr3D 594246405 594246914 509 False 604.0 604 88.178000 2573 3083 1 chr3D.!!$F4 510
2 TraesCS3D01G183400 chr3B 243242319 243246955 4636 False 1078.4 2189 92.336800 309 3867 5 chr3B.!!$F1 3558
3 TraesCS3D01G183400 chr3A 199694177 199697370 3193 True 1635.0 2178 95.760333 804 3867 3 chr3A.!!$R3 3063
4 TraesCS3D01G183400 chr1A 557190351 557193060 2709 True 610.0 678 84.457000 1126 3621 2 chr1A.!!$R2 2495
5 TraesCS3D01G183400 chr1B 641550126 641552771 2645 False 573.0 590 87.134000 1162 3603 2 chr1B.!!$F2 2441
6 TraesCS3D01G183400 chr5D 510916198 510916858 660 True 440.0 440 79.167000 3888 4572 1 chr5D.!!$R1 684
7 TraesCS3D01G183400 chr6B 4851202 4851900 698 True 381.0 381 77.310000 3888 4603 1 chr6B.!!$R1 715
8 TraesCS3D01G183400 chr5A 412771583 412772275 692 False 381.0 381 77.455000 3888 4585 1 chr5A.!!$F1 697
9 TraesCS3D01G183400 chr5A 412776898 412777591 693 False 377.0 377 77.348000 3887 4585 1 chr5A.!!$F2 698
10 TraesCS3D01G183400 chr5A 412760768 412766071 5303 False 324.0 359 76.104500 3888 4585 2 chr5A.!!$F4 697
11 TraesCS3D01G183400 chr4A 493975741 493976245 504 False 302.0 302 78.530000 4116 4603 1 chr4A.!!$F1 487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.035317 TCTGCACATCCACACACCTC 59.965 55.0 0.0 0.0 0.00 3.85 F
299 300 0.182299 TGCACATCCACACACCTCAA 59.818 50.0 0.0 0.0 0.00 3.02 F
2100 3596 0.389296 TGTCGTTGTATCCAGCACGG 60.389 55.0 0.0 0.0 0.00 4.94 F
2101 3597 1.082117 GTCGTTGTATCCAGCACGGG 61.082 60.0 0.0 0.0 34.36 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 3821 0.391661 AGCCATCATGGACACACGAC 60.392 55.000 8.3 0.0 40.96 4.34 R
2360 3895 3.452264 CCTGTGGTGGATGATGAACTCTA 59.548 47.826 0.0 0.0 0.00 2.43 R
3036 5391 0.323629 TCAAGGTCTGGCTTTACCCG 59.676 55.000 0.0 0.0 37.83 5.28 R
4007 10983 0.450583 TCGTCGGAATGGTCGAGAAG 59.549 55.000 0.0 0.0 37.31 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.772932 CAATCAATTGGGTTGGACGATG 58.227 45.455 5.42 0.00 38.39 3.84
25 26 2.869101 TCAATTGGGTTGGACGATGA 57.131 45.000 5.42 0.00 38.39 2.92
26 27 3.147553 TCAATTGGGTTGGACGATGAA 57.852 42.857 5.42 0.00 38.39 2.57
27 28 3.081061 TCAATTGGGTTGGACGATGAAG 58.919 45.455 5.42 0.00 38.39 3.02
28 29 3.081061 CAATTGGGTTGGACGATGAAGA 58.919 45.455 0.00 0.00 34.06 2.87
29 30 2.472695 TTGGGTTGGACGATGAAGAG 57.527 50.000 0.00 0.00 0.00 2.85
30 31 0.613260 TGGGTTGGACGATGAAGAGG 59.387 55.000 0.00 0.00 0.00 3.69
31 32 0.902531 GGGTTGGACGATGAAGAGGA 59.097 55.000 0.00 0.00 0.00 3.71
32 33 1.405661 GGGTTGGACGATGAAGAGGAC 60.406 57.143 0.00 0.00 0.00 3.85
33 34 1.630148 GTTGGACGATGAAGAGGACG 58.370 55.000 0.00 0.00 0.00 4.79
34 35 1.201647 GTTGGACGATGAAGAGGACGA 59.798 52.381 0.00 0.00 0.00 4.20
35 36 1.763968 TGGACGATGAAGAGGACGAT 58.236 50.000 0.00 0.00 0.00 3.73
36 37 2.927028 TGGACGATGAAGAGGACGATA 58.073 47.619 0.00 0.00 0.00 2.92
37 38 3.487372 TGGACGATGAAGAGGACGATAT 58.513 45.455 0.00 0.00 0.00 1.63
38 39 3.889538 TGGACGATGAAGAGGACGATATT 59.110 43.478 0.00 0.00 0.00 1.28
39 40 4.230657 GGACGATGAAGAGGACGATATTG 58.769 47.826 0.00 0.00 0.00 1.90
40 41 4.261656 GGACGATGAAGAGGACGATATTGT 60.262 45.833 0.00 0.00 0.00 2.71
41 42 4.861210 ACGATGAAGAGGACGATATTGTC 58.139 43.478 13.96 13.96 38.17 3.18
53 54 3.885358 CGATATTGTCGTCGAGAATGGA 58.115 45.455 23.61 8.62 45.19 3.41
54 55 4.287720 CGATATTGTCGTCGAGAATGGAA 58.712 43.478 23.61 7.97 45.19 3.53
55 56 4.380087 CGATATTGTCGTCGAGAATGGAAG 59.620 45.833 23.61 11.01 45.19 3.46
56 57 3.594603 ATTGTCGTCGAGAATGGAAGT 57.405 42.857 16.05 0.00 0.00 3.01
57 58 2.347697 TGTCGTCGAGAATGGAAGTG 57.652 50.000 0.00 0.00 0.00 3.16
58 59 0.992802 GTCGTCGAGAATGGAAGTGC 59.007 55.000 0.00 0.00 0.00 4.40
59 60 0.108804 TCGTCGAGAATGGAAGTGCC 60.109 55.000 0.00 0.00 37.10 5.01
77 78 2.153366 CCATTGTGGCAAAGGACAAC 57.847 50.000 0.00 0.00 34.98 3.32
78 79 1.270252 CCATTGTGGCAAAGGACAACC 60.270 52.381 0.00 0.00 34.98 3.77
89 90 1.901591 AGGACAACCTGCAAGTCATG 58.098 50.000 9.52 0.00 45.92 3.07
90 91 0.883833 GGACAACCTGCAAGTCATGG 59.116 55.000 9.52 0.00 34.04 3.66
91 92 0.883833 GACAACCTGCAAGTCATGGG 59.116 55.000 0.00 0.00 32.68 4.00
92 93 0.478072 ACAACCTGCAAGTCATGGGA 59.522 50.000 0.00 0.00 0.00 4.37
93 94 1.133513 ACAACCTGCAAGTCATGGGAA 60.134 47.619 0.00 0.00 0.00 3.97
94 95 1.962807 CAACCTGCAAGTCATGGGAAA 59.037 47.619 0.00 0.00 0.00 3.13
95 96 1.620822 ACCTGCAAGTCATGGGAAAC 58.379 50.000 0.00 0.00 0.00 2.78
96 97 1.133513 ACCTGCAAGTCATGGGAAACA 60.134 47.619 0.00 0.00 0.00 2.83
97 98 1.962807 CCTGCAAGTCATGGGAAACAA 59.037 47.619 0.00 0.00 0.00 2.83
98 99 2.029649 CCTGCAAGTCATGGGAAACAAG 60.030 50.000 0.00 0.00 0.00 3.16
99 100 2.624838 CTGCAAGTCATGGGAAACAAGT 59.375 45.455 0.00 0.00 0.00 3.16
100 101 2.361757 TGCAAGTCATGGGAAACAAGTG 59.638 45.455 0.00 0.00 0.00 3.16
101 102 2.622942 GCAAGTCATGGGAAACAAGTGA 59.377 45.455 0.00 0.00 0.00 3.41
102 103 3.304928 GCAAGTCATGGGAAACAAGTGAG 60.305 47.826 0.00 0.00 0.00 3.51
103 104 4.136796 CAAGTCATGGGAAACAAGTGAGA 58.863 43.478 0.00 0.00 0.00 3.27
104 105 4.013267 AGTCATGGGAAACAAGTGAGAG 57.987 45.455 0.00 0.00 0.00 3.20
105 106 3.648067 AGTCATGGGAAACAAGTGAGAGA 59.352 43.478 0.00 0.00 0.00 3.10
106 107 4.103153 AGTCATGGGAAACAAGTGAGAGAA 59.897 41.667 0.00 0.00 0.00 2.87
107 108 4.453819 GTCATGGGAAACAAGTGAGAGAAG 59.546 45.833 0.00 0.00 0.00 2.85
108 109 3.492102 TGGGAAACAAGTGAGAGAAGG 57.508 47.619 0.00 0.00 0.00 3.46
109 110 2.155279 GGGAAACAAGTGAGAGAAGGC 58.845 52.381 0.00 0.00 0.00 4.35
110 111 2.487265 GGGAAACAAGTGAGAGAAGGCA 60.487 50.000 0.00 0.00 0.00 4.75
111 112 3.214328 GGAAACAAGTGAGAGAAGGCAA 58.786 45.455 0.00 0.00 0.00 4.52
112 113 3.251972 GGAAACAAGTGAGAGAAGGCAAG 59.748 47.826 0.00 0.00 0.00 4.01
113 114 3.845781 AACAAGTGAGAGAAGGCAAGA 57.154 42.857 0.00 0.00 0.00 3.02
114 115 3.399440 ACAAGTGAGAGAAGGCAAGAG 57.601 47.619 0.00 0.00 0.00 2.85
115 116 2.075338 CAAGTGAGAGAAGGCAAGAGC 58.925 52.381 0.00 0.00 41.10 4.09
116 117 1.346062 AGTGAGAGAAGGCAAGAGCA 58.654 50.000 0.00 0.00 44.61 4.26
117 118 1.907936 AGTGAGAGAAGGCAAGAGCAT 59.092 47.619 0.00 0.00 44.61 3.79
118 119 2.093553 AGTGAGAGAAGGCAAGAGCATC 60.094 50.000 0.00 0.00 44.61 3.91
119 120 1.209019 TGAGAGAAGGCAAGAGCATCC 59.791 52.381 0.00 0.00 44.61 3.51
120 121 0.545646 AGAGAAGGCAAGAGCATCCC 59.454 55.000 0.00 0.00 44.61 3.85
121 122 0.813210 GAGAAGGCAAGAGCATCCCG 60.813 60.000 0.00 0.00 44.61 5.14
122 123 1.078143 GAAGGCAAGAGCATCCCGT 60.078 57.895 0.00 0.00 44.61 5.28
123 124 1.372087 GAAGGCAAGAGCATCCCGTG 61.372 60.000 0.00 0.00 44.61 4.94
124 125 1.841302 AAGGCAAGAGCATCCCGTGA 61.841 55.000 0.00 0.00 44.61 4.35
125 126 2.109126 GGCAAGAGCATCCCGTGAC 61.109 63.158 0.00 0.00 44.61 3.67
126 127 2.456119 GCAAGAGCATCCCGTGACG 61.456 63.158 0.00 0.00 41.58 4.35
127 128 2.125512 AAGAGCATCCCGTGACGC 60.126 61.111 0.00 0.00 33.66 5.19
128 129 3.665675 AAGAGCATCCCGTGACGCC 62.666 63.158 0.00 0.00 33.66 5.68
129 130 4.451150 GAGCATCCCGTGACGCCA 62.451 66.667 0.00 0.00 27.33 5.69
130 131 4.760047 AGCATCCCGTGACGCCAC 62.760 66.667 0.00 0.00 39.86 5.01
142 143 4.852609 GTGACGCCACGACTATAAAAAT 57.147 40.909 0.00 0.00 33.10 1.82
143 144 4.574759 GTGACGCCACGACTATAAAAATG 58.425 43.478 0.00 0.00 33.10 2.32
144 145 4.092383 GTGACGCCACGACTATAAAAATGT 59.908 41.667 0.00 0.00 33.10 2.71
145 146 4.327898 TGACGCCACGACTATAAAAATGTC 59.672 41.667 0.00 0.00 0.00 3.06
146 147 3.619929 ACGCCACGACTATAAAAATGTCC 59.380 43.478 0.00 0.00 0.00 4.02
147 148 3.869246 CGCCACGACTATAAAAATGTCCT 59.131 43.478 0.00 0.00 0.00 3.85
148 149 4.025979 CGCCACGACTATAAAAATGTCCTC 60.026 45.833 0.00 0.00 0.00 3.71
149 150 4.272748 GCCACGACTATAAAAATGTCCTCC 59.727 45.833 0.00 0.00 0.00 4.30
150 151 5.424757 CCACGACTATAAAAATGTCCTCCA 58.575 41.667 0.00 0.00 0.00 3.86
151 152 5.293569 CCACGACTATAAAAATGTCCTCCAC 59.706 44.000 0.00 0.00 0.00 4.02
152 153 5.872617 CACGACTATAAAAATGTCCTCCACA 59.127 40.000 0.00 0.00 40.18 4.17
154 155 6.538742 ACGACTATAAAAATGTCCTCCACATG 59.461 38.462 0.00 0.00 45.77 3.21
155 156 6.017934 CGACTATAAAAATGTCCTCCACATGG 60.018 42.308 0.00 0.00 45.77 3.66
156 157 6.969043 ACTATAAAAATGTCCTCCACATGGA 58.031 36.000 0.00 0.00 45.77 3.41
157 158 6.828785 ACTATAAAAATGTCCTCCACATGGAC 59.171 38.462 6.01 6.01 45.77 4.02
160 161 2.584608 GTCCTCCACATGGACGGG 59.415 66.667 13.33 7.84 43.55 5.28
161 162 3.399181 TCCTCCACATGGACGGGC 61.399 66.667 13.33 0.00 39.78 6.13
162 163 3.716195 CCTCCACATGGACGGGCA 61.716 66.667 0.00 0.00 39.78 5.36
163 164 2.591753 CTCCACATGGACGGGCAT 59.408 61.111 0.00 0.00 39.78 4.40
164 165 1.524621 CTCCACATGGACGGGCATC 60.525 63.158 0.00 0.00 39.78 3.91
165 166 2.256072 CTCCACATGGACGGGCATCA 62.256 60.000 0.00 0.00 39.78 3.07
166 167 1.152902 CCACATGGACGGGCATCAT 60.153 57.895 0.00 0.00 37.39 2.45
167 168 0.752743 CCACATGGACGGGCATCATT 60.753 55.000 0.00 0.00 37.39 2.57
168 169 1.105457 CACATGGACGGGCATCATTT 58.895 50.000 0.00 0.00 0.00 2.32
169 170 1.066002 CACATGGACGGGCATCATTTC 59.934 52.381 0.00 0.00 0.00 2.17
170 171 1.064463 ACATGGACGGGCATCATTTCT 60.064 47.619 0.00 0.00 0.00 2.52
171 172 1.335810 CATGGACGGGCATCATTTCTG 59.664 52.381 0.00 0.00 0.00 3.02
172 173 1.031571 TGGACGGGCATCATTTCTGC 61.032 55.000 0.00 0.00 38.93 4.26
173 174 1.353103 GACGGGCATCATTTCTGCG 59.647 57.895 0.00 0.00 40.59 5.18
174 175 1.078497 ACGGGCATCATTTCTGCGA 60.078 52.632 0.00 0.00 40.59 5.10
175 176 1.091771 ACGGGCATCATTTCTGCGAG 61.092 55.000 0.00 0.00 40.59 5.03
176 177 1.779025 CGGGCATCATTTCTGCGAGG 61.779 60.000 0.00 0.00 40.59 4.63
177 178 1.450531 GGGCATCATTTCTGCGAGGG 61.451 60.000 0.00 0.00 40.59 4.30
178 179 0.464373 GGCATCATTTCTGCGAGGGA 60.464 55.000 0.00 0.00 40.59 4.20
179 180 0.942962 GCATCATTTCTGCGAGGGAG 59.057 55.000 0.00 0.00 0.00 4.30
180 181 1.473965 GCATCATTTCTGCGAGGGAGA 60.474 52.381 0.00 0.00 0.00 3.71
181 182 2.910199 CATCATTTCTGCGAGGGAGAA 58.090 47.619 0.00 0.00 0.00 2.87
182 183 2.386661 TCATTTCTGCGAGGGAGAAC 57.613 50.000 0.00 0.00 0.00 3.01
183 184 1.623311 TCATTTCTGCGAGGGAGAACA 59.377 47.619 0.00 0.00 0.00 3.18
184 185 2.038426 TCATTTCTGCGAGGGAGAACAA 59.962 45.455 0.00 0.00 0.00 2.83
185 186 2.169832 TTTCTGCGAGGGAGAACAAG 57.830 50.000 0.00 0.00 0.00 3.16
186 187 1.338107 TTCTGCGAGGGAGAACAAGA 58.662 50.000 0.00 0.00 0.00 3.02
187 188 0.603569 TCTGCGAGGGAGAACAAGAC 59.396 55.000 0.00 0.00 0.00 3.01
188 189 0.734253 CTGCGAGGGAGAACAAGACG 60.734 60.000 0.00 0.00 0.00 4.18
189 190 1.176619 TGCGAGGGAGAACAAGACGA 61.177 55.000 0.00 0.00 0.00 4.20
190 191 0.456995 GCGAGGGAGAACAAGACGAG 60.457 60.000 0.00 0.00 0.00 4.18
191 192 1.166129 CGAGGGAGAACAAGACGAGA 58.834 55.000 0.00 0.00 0.00 4.04
192 193 1.131504 CGAGGGAGAACAAGACGAGAG 59.868 57.143 0.00 0.00 0.00 3.20
193 194 2.438411 GAGGGAGAACAAGACGAGAGA 58.562 52.381 0.00 0.00 0.00 3.10
194 195 3.020984 GAGGGAGAACAAGACGAGAGAT 58.979 50.000 0.00 0.00 0.00 2.75
195 196 4.200874 GAGGGAGAACAAGACGAGAGATA 58.799 47.826 0.00 0.00 0.00 1.98
196 197 3.949113 AGGGAGAACAAGACGAGAGATAC 59.051 47.826 0.00 0.00 0.00 2.24
197 198 3.695060 GGGAGAACAAGACGAGAGATACA 59.305 47.826 0.00 0.00 0.00 2.29
198 199 4.158025 GGGAGAACAAGACGAGAGATACAA 59.842 45.833 0.00 0.00 0.00 2.41
199 200 5.336531 GGGAGAACAAGACGAGAGATACAAA 60.337 44.000 0.00 0.00 0.00 2.83
200 201 5.573669 GGAGAACAAGACGAGAGATACAAAC 59.426 44.000 0.00 0.00 0.00 2.93
201 202 6.334102 AGAACAAGACGAGAGATACAAACT 57.666 37.500 0.00 0.00 0.00 2.66
202 203 6.383415 AGAACAAGACGAGAGATACAAACTC 58.617 40.000 0.00 0.00 34.95 3.01
208 209 4.807754 CGAGAGATACAAACTCGTGTTG 57.192 45.455 3.24 1.53 45.23 3.33
209 210 3.608506 CGAGAGATACAAACTCGTGTTGG 59.391 47.826 3.24 3.22 45.23 3.77
210 211 4.615223 CGAGAGATACAAACTCGTGTTGGA 60.615 45.833 11.57 0.16 45.23 3.53
211 212 5.407407 AGAGATACAAACTCGTGTTGGAT 57.593 39.130 11.57 4.79 39.12 3.41
212 213 5.171476 AGAGATACAAACTCGTGTTGGATG 58.829 41.667 11.57 5.50 39.12 3.51
213 214 3.684788 AGATACAAACTCGTGTTGGATGC 59.315 43.478 11.57 0.71 36.39 3.91
214 215 0.586319 ACAAACTCGTGTTGGATGCG 59.414 50.000 11.57 0.00 36.39 4.73
215 216 0.725784 CAAACTCGTGTTGGATGCGC 60.726 55.000 0.00 0.00 36.39 6.09
216 217 1.163420 AAACTCGTGTTGGATGCGCA 61.163 50.000 14.96 14.96 36.39 6.09
217 218 1.163420 AACTCGTGTTGGATGCGCAA 61.163 50.000 17.11 0.00 34.71 4.85
218 219 1.163420 ACTCGTGTTGGATGCGCAAA 61.163 50.000 17.11 0.01 0.00 3.68
219 220 0.040514 CTCGTGTTGGATGCGCAAAA 60.041 50.000 17.11 6.83 0.00 2.44
220 221 0.040514 TCGTGTTGGATGCGCAAAAG 60.041 50.000 17.11 0.08 0.00 2.27
221 222 0.317770 CGTGTTGGATGCGCAAAAGT 60.318 50.000 17.11 0.00 0.00 2.66
222 223 1.069568 CGTGTTGGATGCGCAAAAGTA 60.070 47.619 17.11 0.00 0.00 2.24
223 224 2.584791 GTGTTGGATGCGCAAAAGTAG 58.415 47.619 17.11 0.00 0.00 2.57
224 225 2.031157 GTGTTGGATGCGCAAAAGTAGT 60.031 45.455 17.11 0.00 0.00 2.73
225 226 2.621055 TGTTGGATGCGCAAAAGTAGTT 59.379 40.909 17.11 0.00 0.00 2.24
226 227 3.067461 TGTTGGATGCGCAAAAGTAGTTT 59.933 39.130 17.11 0.00 0.00 2.66
239 240 7.993238 CAAAAGTAGTTTGTATCATGACGTG 57.007 36.000 0.00 0.00 41.55 4.49
240 241 7.572759 CAAAAGTAGTTTGTATCATGACGTGT 58.427 34.615 0.00 0.00 41.55 4.49
241 242 8.705134 CAAAAGTAGTTTGTATCATGACGTGTA 58.295 33.333 0.00 0.00 41.55 2.90
242 243 8.997621 AAAGTAGTTTGTATCATGACGTGTAT 57.002 30.769 0.00 0.00 0.00 2.29
243 244 7.987268 AGTAGTTTGTATCATGACGTGTATG 57.013 36.000 0.00 0.00 0.00 2.39
244 245 6.978659 AGTAGTTTGTATCATGACGTGTATGG 59.021 38.462 0.00 0.00 0.00 2.74
245 246 5.972935 AGTTTGTATCATGACGTGTATGGA 58.027 37.500 0.00 0.00 0.00 3.41
246 247 6.042777 AGTTTGTATCATGACGTGTATGGAG 58.957 40.000 0.00 0.00 0.00 3.86
247 248 5.592104 TTGTATCATGACGTGTATGGAGT 57.408 39.130 0.00 0.00 0.00 3.85
248 249 5.592104 TGTATCATGACGTGTATGGAGTT 57.408 39.130 0.00 0.00 0.00 3.01
249 250 5.972935 TGTATCATGACGTGTATGGAGTTT 58.027 37.500 0.00 0.00 0.00 2.66
250 251 7.102847 TGTATCATGACGTGTATGGAGTTTA 57.897 36.000 0.00 0.00 0.00 2.01
251 252 7.722363 TGTATCATGACGTGTATGGAGTTTAT 58.278 34.615 0.00 0.00 0.00 1.40
252 253 8.201464 TGTATCATGACGTGTATGGAGTTTATT 58.799 33.333 0.00 0.00 0.00 1.40
253 254 6.902224 TCATGACGTGTATGGAGTTTATTG 57.098 37.500 0.00 0.00 0.00 1.90
254 255 6.403049 TCATGACGTGTATGGAGTTTATTGT 58.597 36.000 0.00 0.00 0.00 2.71
255 256 6.876789 TCATGACGTGTATGGAGTTTATTGTT 59.123 34.615 0.00 0.00 0.00 2.83
256 257 7.389330 TCATGACGTGTATGGAGTTTATTGTTT 59.611 33.333 0.00 0.00 0.00 2.83
257 258 7.124347 TGACGTGTATGGAGTTTATTGTTTC 57.876 36.000 0.00 0.00 0.00 2.78
258 259 6.706716 TGACGTGTATGGAGTTTATTGTTTCA 59.293 34.615 0.00 0.00 0.00 2.69
259 260 7.389330 TGACGTGTATGGAGTTTATTGTTTCAT 59.611 33.333 0.00 0.00 0.00 2.57
260 261 7.748847 ACGTGTATGGAGTTTATTGTTTCATC 58.251 34.615 0.00 0.00 0.00 2.92
261 262 6.899771 CGTGTATGGAGTTTATTGTTTCATCG 59.100 38.462 0.00 0.00 0.00 3.84
262 263 7.186804 GTGTATGGAGTTTATTGTTTCATCGG 58.813 38.462 0.00 0.00 0.00 4.18
263 264 7.065324 GTGTATGGAGTTTATTGTTTCATCGGA 59.935 37.037 0.00 0.00 0.00 4.55
264 265 5.873179 TGGAGTTTATTGTTTCATCGGAC 57.127 39.130 0.00 0.00 0.00 4.79
265 266 4.390603 TGGAGTTTATTGTTTCATCGGACG 59.609 41.667 0.00 0.00 0.00 4.79
266 267 4.628333 GGAGTTTATTGTTTCATCGGACGA 59.372 41.667 0.00 0.00 0.00 4.20
267 268 5.220416 GGAGTTTATTGTTTCATCGGACGAG 60.220 44.000 0.00 0.00 0.00 4.18
268 269 5.475719 AGTTTATTGTTTCATCGGACGAGA 58.524 37.500 0.00 0.00 0.00 4.04
269 270 5.577164 AGTTTATTGTTTCATCGGACGAGAG 59.423 40.000 0.00 0.00 0.00 3.20
270 271 3.868757 ATTGTTTCATCGGACGAGAGA 57.131 42.857 0.00 0.00 0.00 3.10
271 272 3.868757 TTGTTTCATCGGACGAGAGAT 57.131 42.857 0.00 0.00 0.00 2.75
272 273 4.976224 TTGTTTCATCGGACGAGAGATA 57.024 40.909 0.00 0.00 0.00 1.98
273 274 4.288670 TGTTTCATCGGACGAGAGATAC 57.711 45.455 0.00 6.98 0.00 2.24
274 275 3.692593 TGTTTCATCGGACGAGAGATACA 59.307 43.478 14.26 14.26 0.00 2.29
275 276 4.157105 TGTTTCATCGGACGAGAGATACAA 59.843 41.667 15.21 1.86 0.00 2.41
276 277 4.976224 TTCATCGGACGAGAGATACAAA 57.024 40.909 0.00 0.00 0.00 2.83
277 278 4.288670 TCATCGGACGAGAGATACAAAC 57.711 45.455 0.00 0.00 0.00 2.93
278 279 3.945921 TCATCGGACGAGAGATACAAACT 59.054 43.478 0.00 0.00 0.00 2.66
279 280 4.035324 TCATCGGACGAGAGATACAAACTC 59.965 45.833 0.00 0.00 34.95 3.01
280 281 3.607741 TCGGACGAGAGATACAAACTCT 58.392 45.455 0.00 0.00 45.74 3.24
281 282 3.374367 TCGGACGAGAGATACAAACTCTG 59.626 47.826 0.00 0.00 43.55 3.35
282 283 3.440228 GGACGAGAGATACAAACTCTGC 58.560 50.000 0.00 0.00 43.55 4.26
283 284 3.119459 GGACGAGAGATACAAACTCTGCA 60.119 47.826 0.00 0.00 43.55 4.41
284 285 3.839293 ACGAGAGATACAAACTCTGCAC 58.161 45.455 0.00 0.00 43.55 4.57
285 286 3.255888 ACGAGAGATACAAACTCTGCACA 59.744 43.478 0.00 0.00 43.55 4.57
286 287 4.081972 ACGAGAGATACAAACTCTGCACAT 60.082 41.667 0.00 0.00 43.55 3.21
287 288 4.502282 CGAGAGATACAAACTCTGCACATC 59.498 45.833 0.00 0.00 43.55 3.06
288 289 4.764172 AGAGATACAAACTCTGCACATCC 58.236 43.478 0.00 0.00 42.20 3.51
289 290 4.223700 AGAGATACAAACTCTGCACATCCA 59.776 41.667 0.00 0.00 42.20 3.41
290 291 4.256920 AGATACAAACTCTGCACATCCAC 58.743 43.478 0.00 0.00 0.00 4.02
291 292 2.346766 ACAAACTCTGCACATCCACA 57.653 45.000 0.00 0.00 0.00 4.17
292 293 1.949525 ACAAACTCTGCACATCCACAC 59.050 47.619 0.00 0.00 0.00 3.82
293 294 1.948834 CAAACTCTGCACATCCACACA 59.051 47.619 0.00 0.00 0.00 3.72
294 295 1.597742 AACTCTGCACATCCACACAC 58.402 50.000 0.00 0.00 0.00 3.82
295 296 0.250467 ACTCTGCACATCCACACACC 60.250 55.000 0.00 0.00 0.00 4.16
296 297 0.035881 CTCTGCACATCCACACACCT 59.964 55.000 0.00 0.00 0.00 4.00
297 298 0.035317 TCTGCACATCCACACACCTC 59.965 55.000 0.00 0.00 0.00 3.85
298 299 0.250424 CTGCACATCCACACACCTCA 60.250 55.000 0.00 0.00 0.00 3.86
299 300 0.182299 TGCACATCCACACACCTCAA 59.818 50.000 0.00 0.00 0.00 3.02
300 301 0.877071 GCACATCCACACACCTCAAG 59.123 55.000 0.00 0.00 0.00 3.02
301 302 1.543208 GCACATCCACACACCTCAAGA 60.543 52.381 0.00 0.00 0.00 3.02
302 303 2.420642 CACATCCACACACCTCAAGAG 58.579 52.381 0.00 0.00 0.00 2.85
303 304 1.271054 ACATCCACACACCTCAAGAGC 60.271 52.381 0.00 0.00 0.00 4.09
304 305 1.059098 ATCCACACACCTCAAGAGCA 58.941 50.000 0.00 0.00 0.00 4.26
305 306 1.059098 TCCACACACCTCAAGAGCAT 58.941 50.000 0.00 0.00 0.00 3.79
306 307 1.002430 TCCACACACCTCAAGAGCATC 59.998 52.381 0.00 0.00 0.00 3.91
327 328 8.129211 AGCATCTACAAAGTTTACTGTTTTGAC 58.871 33.333 9.07 0.00 36.09 3.18
328 329 8.129211 GCATCTACAAAGTTTACTGTTTTGACT 58.871 33.333 9.07 0.00 36.09 3.41
329 330 9.651718 CATCTACAAAGTTTACTGTTTTGACTC 57.348 33.333 9.07 0.00 36.09 3.36
383 384 3.629855 TGTCCGAACAAGCTGAAATTTGA 59.370 39.130 0.00 0.00 30.70 2.69
387 388 3.418619 CGAACAAGCTGAAATTTGACACG 59.581 43.478 0.00 0.00 0.00 4.49
396 397 4.522877 TGAAATTTGACACGAACATCACG 58.477 39.130 0.00 0.00 0.00 4.35
399 400 0.579630 TTGACACGAACATCACGCAC 59.420 50.000 0.00 0.00 0.00 5.34
404 405 0.944311 ACGAACATCACGCACTGGAC 60.944 55.000 0.00 0.00 0.00 4.02
415 416 1.172812 GCACTGGACCAACTTCCACC 61.173 60.000 0.00 0.00 41.00 4.61
478 483 3.548745 TCATCGGATGCAGATGAGTTT 57.451 42.857 13.15 0.00 46.52 2.66
479 484 3.200483 TCATCGGATGCAGATGAGTTTG 58.800 45.455 13.15 0.00 46.52 2.93
481 486 1.554617 TCGGATGCAGATGAGTTTGGA 59.445 47.619 0.00 0.00 0.00 3.53
484 489 2.421424 GGATGCAGATGAGTTTGGACAC 59.579 50.000 0.00 0.00 0.00 3.67
499 504 4.495690 TGGACACCGAATTGAATATCCA 57.504 40.909 0.00 0.00 32.62 3.41
500 505 5.047566 TGGACACCGAATTGAATATCCAT 57.952 39.130 0.00 0.00 30.08 3.41
502 507 5.890985 TGGACACCGAATTGAATATCCATTT 59.109 36.000 0.00 0.00 30.08 2.32
544 549 6.272558 ACTTTACAGAGGGAGTACCAATTTCT 59.727 38.462 0.00 0.00 43.89 2.52
549 554 6.070710 ACAGAGGGAGTACCAATTTCTTACTC 60.071 42.308 0.00 8.47 43.89 2.59
550 555 5.127356 AGAGGGAGTACCAATTTCTTACTCG 59.873 44.000 0.00 0.00 41.78 4.18
551 556 5.021458 AGGGAGTACCAATTTCTTACTCGA 58.979 41.667 0.00 0.00 41.78 4.04
553 558 6.156429 AGGGAGTACCAATTTCTTACTCGATT 59.844 38.462 0.00 0.00 41.78 3.34
554 559 7.343833 AGGGAGTACCAATTTCTTACTCGATTA 59.656 37.037 0.00 0.00 41.78 1.75
575 584 7.116948 CGATTAACATTTTTACATGGTGCCAAA 59.883 33.333 0.00 0.00 0.00 3.28
583 592 7.721286 TTTTACATGGTGCCAAATTTTACAG 57.279 32.000 0.00 0.00 0.00 2.74
589 598 7.602265 ACATGGTGCCAAATTTTACAGTTTATC 59.398 33.333 0.00 0.00 0.00 1.75
637 646 4.080638 TGGAAAATGCAACCCAAGAAAAGT 60.081 37.500 0.00 0.00 0.00 2.66
643 652 1.341209 CAACCCAAGAAAAGTCAGGGC 59.659 52.381 0.00 0.00 42.37 5.19
645 654 1.217942 ACCCAAGAAAAGTCAGGGCTT 59.782 47.619 0.00 0.00 42.37 4.35
646 655 1.889170 CCCAAGAAAAGTCAGGGCTTC 59.111 52.381 0.00 0.00 35.37 3.86
667 1789 3.940221 TCCGAAAACGGTTCTTTCAAAGA 59.060 39.130 8.46 0.00 33.25 2.52
669 1791 4.034742 CCGAAAACGGTTCTTTCAAAGAGA 59.965 41.667 0.00 0.00 39.03 3.10
672 1794 2.495084 ACGGTTCTTTCAAAGAGAGGC 58.505 47.619 0.00 0.00 39.03 4.70
673 1795 1.461127 CGGTTCTTTCAAAGAGAGGCG 59.539 52.381 0.00 0.00 39.03 5.52
907 2040 4.534141 TTAATCGACGGCGGGGGC 62.534 66.667 12.58 0.00 38.28 5.80
945 2083 4.449743 CACAGGCTCTATACTCTCGACTAC 59.550 50.000 0.00 0.00 0.00 2.73
957 2101 6.390987 ACTCTCGACTACTTAAATTTTGCG 57.609 37.500 0.00 0.00 0.00 4.85
958 2102 5.924825 ACTCTCGACTACTTAAATTTTGCGT 59.075 36.000 0.00 0.00 0.00 5.24
960 2104 6.586751 TCTCGACTACTTAAATTTTGCGTTG 58.413 36.000 0.00 0.00 0.00 4.10
961 2105 5.681880 TCGACTACTTAAATTTTGCGTTGG 58.318 37.500 0.00 0.00 0.00 3.77
962 2106 5.466058 TCGACTACTTAAATTTTGCGTTGGA 59.534 36.000 0.00 0.00 0.00 3.53
963 2107 6.148150 TCGACTACTTAAATTTTGCGTTGGAT 59.852 34.615 0.00 0.00 0.00 3.41
964 2108 6.464834 CGACTACTTAAATTTTGCGTTGGATC 59.535 38.462 0.00 0.00 0.00 3.36
965 2109 7.448748 ACTACTTAAATTTTGCGTTGGATCT 57.551 32.000 0.00 0.00 0.00 2.75
966 2110 8.556213 ACTACTTAAATTTTGCGTTGGATCTA 57.444 30.769 0.00 0.00 0.00 1.98
967 2111 8.665685 ACTACTTAAATTTTGCGTTGGATCTAG 58.334 33.333 0.00 0.00 0.00 2.43
968 2112 7.681939 ACTTAAATTTTGCGTTGGATCTAGA 57.318 32.000 0.00 0.00 0.00 2.43
992 2136 1.089920 CCTGCCAGTCTTTGATTCGG 58.910 55.000 0.00 0.00 0.00 4.30
1020 2164 3.838271 GAGATGGTCCTCGCCGCA 61.838 66.667 0.00 0.00 0.00 5.69
1671 2827 8.871862 TGTTGAAACTGTCATCAATTTCTTTTG 58.128 29.630 10.82 0.00 39.53 2.44
1708 2864 4.527509 AGGATCTTGACGTAGCATATGG 57.472 45.455 4.56 0.00 0.00 2.74
1709 2865 3.259374 AGGATCTTGACGTAGCATATGGG 59.741 47.826 4.56 0.00 0.00 4.00
1710 2866 3.589988 GATCTTGACGTAGCATATGGGG 58.410 50.000 4.56 0.00 0.00 4.96
1711 2867 2.394632 TCTTGACGTAGCATATGGGGT 58.605 47.619 4.56 0.00 0.00 4.95
1800 2956 5.590530 AATTGTGCTTTCTTGTGGTACAA 57.409 34.783 0.00 0.00 44.16 2.41
1840 2996 3.241701 GCAACCCATGACGTATTTGTTG 58.758 45.455 11.06 11.06 33.75 3.33
1843 2999 5.387279 CAACCCATGACGTATTTGTTGTAC 58.613 41.667 0.00 0.00 0.00 2.90
1911 3074 4.103153 ACCACCTCTCTCTTGATGAAAACA 59.897 41.667 0.00 0.00 0.00 2.83
1995 3165 5.894298 TCCTGATATGCTGGAAGTACAAT 57.106 39.130 0.00 0.00 41.13 2.71
2065 3561 1.109609 CCCTAGTGAACTCGGTACCC 58.890 60.000 6.25 0.00 0.00 3.69
2068 3564 2.165845 CCTAGTGAACTCGGTACCCAAG 59.834 54.545 6.25 6.87 0.00 3.61
2097 3593 2.670905 CGATTTGTCGTTGTATCCAGCA 59.329 45.455 0.00 0.00 0.00 4.41
2098 3594 3.483574 CGATTTGTCGTTGTATCCAGCAC 60.484 47.826 0.00 0.00 0.00 4.40
2099 3595 1.424403 TTGTCGTTGTATCCAGCACG 58.576 50.000 0.00 0.00 0.00 5.34
2100 3596 0.389296 TGTCGTTGTATCCAGCACGG 60.389 55.000 0.00 0.00 0.00 4.94
2101 3597 1.082117 GTCGTTGTATCCAGCACGGG 61.082 60.000 0.00 0.00 34.36 5.28
2102 3598 2.461110 CGTTGTATCCAGCACGGGC 61.461 63.158 0.00 0.00 41.61 6.13
2167 3665 6.892310 AAACTTGTTGAAATGCTTGAACTC 57.108 33.333 0.00 0.00 30.74 3.01
2222 3721 8.477984 TTTGAACTTTGAACAATCTGAAAAGG 57.522 30.769 0.00 0.00 33.20 3.11
2239 3769 9.801873 TCTGAAAAGGAATAGTTTCAAAAACTG 57.198 29.630 13.83 0.00 33.64 3.16
2421 4051 8.677148 AAACAACAGTGAACACTATAATGACT 57.323 30.769 7.15 0.00 40.20 3.41
2450 4083 6.653273 AATCACCATATAATTCGATGCTCG 57.347 37.500 0.00 0.00 42.10 5.03
2503 4136 2.731217 GACAAAATGTCAGTGCACACC 58.269 47.619 21.04 6.54 46.22 4.16
2528 4164 4.766891 CACACTACCCCAAGACATGAAAAT 59.233 41.667 0.00 0.00 0.00 1.82
2590 4424 3.077359 GCTTGACAATGGTCTACAGCTT 58.923 45.455 1.02 0.00 44.61 3.74
2598 4432 1.270625 TGGTCTACAGCTTTGGGTTCG 60.271 52.381 0.00 0.00 0.00 3.95
2604 4438 2.711542 ACAGCTTTGGGTTCGGATTAG 58.288 47.619 0.00 0.00 0.00 1.73
2609 4837 2.051334 TTGGGTTCGGATTAGCATGG 57.949 50.000 0.00 0.00 0.00 3.66
2677 5007 5.105106 TGAGGTTAACTTTGTCTCACAGTGA 60.105 40.000 2.48 2.48 30.58 3.41
3036 5391 5.046288 AGATTTCCTCCAGAATGACATCC 57.954 43.478 0.00 0.00 39.69 3.51
3572 5927 4.397417 GCAGTGAAGGCTTCTATTGACAAT 59.603 41.667 26.26 5.87 0.00 2.71
3804 6164 3.463944 AGTGTTTTCTACGTCAACCTGG 58.536 45.455 0.00 0.00 0.00 4.45
3844 6204 4.022935 CAGAAAGCTGTAAAATGGCACTCA 60.023 41.667 0.00 0.00 37.37 3.41
3850 6210 4.439289 GCTGTAAAATGGCACTCAGATTCC 60.439 45.833 0.00 0.00 0.00 3.01
3867 6227 3.433306 TTCCGGTTTCCTCAATGTGAT 57.567 42.857 0.00 0.00 0.00 3.06
3868 6228 4.561500 TTCCGGTTTCCTCAATGTGATA 57.438 40.909 0.00 0.00 0.00 2.15
3869 6229 4.771114 TCCGGTTTCCTCAATGTGATAT 57.229 40.909 0.00 0.00 0.00 1.63
3870 6230 5.110814 TCCGGTTTCCTCAATGTGATATT 57.889 39.130 0.00 0.00 0.00 1.28
3871 6231 6.241882 TCCGGTTTCCTCAATGTGATATTA 57.758 37.500 0.00 0.00 0.00 0.98
3872 6232 6.053005 TCCGGTTTCCTCAATGTGATATTAC 58.947 40.000 0.00 0.00 0.00 1.89
3873 6233 5.820423 CCGGTTTCCTCAATGTGATATTACA 59.180 40.000 2.42 2.42 34.63 2.41
3874 6234 6.317642 CCGGTTTCCTCAATGTGATATTACAA 59.682 38.462 4.23 0.00 33.69 2.41
3875 6235 7.148154 CCGGTTTCCTCAATGTGATATTACAAA 60.148 37.037 4.23 0.00 33.69 2.83
3876 6236 8.240682 CGGTTTCCTCAATGTGATATTACAAAA 58.759 33.333 4.23 0.00 33.69 2.44
3877 6237 9.573133 GGTTTCCTCAATGTGATATTACAAAAG 57.427 33.333 4.23 3.02 33.69 2.27
3952 10924 2.487532 CCCTACCCACGCGTCCTAG 61.488 68.421 9.86 8.09 0.00 3.02
3982 10956 1.546548 GCACTGCCCTCTTTCCTTTCT 60.547 52.381 0.00 0.00 0.00 2.52
3983 10958 2.157738 CACTGCCCTCTTTCCTTTCTG 58.842 52.381 0.00 0.00 0.00 3.02
4007 10983 1.985895 TCCCCTTCCTCTTTCCAAGTC 59.014 52.381 0.00 0.00 0.00 3.01
4018 10994 3.578716 TCTTTCCAAGTCTTCTCGACCAT 59.421 43.478 0.00 0.00 43.91 3.55
4019 10995 4.040461 TCTTTCCAAGTCTTCTCGACCATT 59.960 41.667 0.00 0.00 43.91 3.16
4020 10996 3.594603 TCCAAGTCTTCTCGACCATTC 57.405 47.619 0.00 0.00 43.91 2.67
4021 10997 2.233922 TCCAAGTCTTCTCGACCATTCC 59.766 50.000 0.00 0.00 43.91 3.01
4022 10998 2.263077 CAAGTCTTCTCGACCATTCCG 58.737 52.381 0.00 0.00 43.91 4.30
4023 10999 1.835494 AGTCTTCTCGACCATTCCGA 58.165 50.000 0.00 0.00 43.91 4.55
4024 11000 1.473278 AGTCTTCTCGACCATTCCGAC 59.527 52.381 0.00 0.00 43.91 4.79
4025 11001 0.450583 TCTTCTCGACCATTCCGACG 59.549 55.000 0.00 0.00 32.18 5.12
4026 11002 0.450583 CTTCTCGACCATTCCGACGA 59.549 55.000 0.00 0.00 32.18 4.20
4027 11003 0.883153 TTCTCGACCATTCCGACGAA 59.117 50.000 0.00 0.00 34.50 3.85
4028 11004 0.169672 TCTCGACCATTCCGACGAAC 59.830 55.000 0.00 0.00 34.50 3.95
4029 11005 1.132199 CTCGACCATTCCGACGAACG 61.132 60.000 0.00 0.00 42.18 3.95
4030 11006 1.154169 CGACCATTCCGACGAACGA 60.154 57.895 0.00 0.00 45.77 3.85
4031 11007 0.730155 CGACCATTCCGACGAACGAA 60.730 55.000 0.00 0.00 45.77 3.85
4032 11008 0.712222 GACCATTCCGACGAACGAAC 59.288 55.000 0.00 0.00 45.77 3.95
4033 11009 0.316204 ACCATTCCGACGAACGAACT 59.684 50.000 0.00 0.00 45.77 3.01
4034 11010 1.541147 ACCATTCCGACGAACGAACTA 59.459 47.619 0.00 0.00 45.77 2.24
4035 11011 2.182825 CCATTCCGACGAACGAACTAG 58.817 52.381 0.00 0.00 45.77 2.57
4036 11012 1.582502 CATTCCGACGAACGAACTAGC 59.417 52.381 0.00 0.00 45.77 3.42
4037 11013 0.453282 TTCCGACGAACGAACTAGCG 60.453 55.000 0.00 0.00 45.77 4.26
4065 11041 0.458197 CGCAGCTCCTCTGTTCTCTG 60.458 60.000 0.00 0.00 44.66 3.35
4071 11047 0.178891 TCCTCTGTTCTCTGCCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
4085 11061 2.103373 GCCCCTTCAATCCTTCTTTCC 58.897 52.381 0.00 0.00 0.00 3.13
4105 11081 1.447317 CTTCACCACAAACGCCTGCT 61.447 55.000 0.00 0.00 0.00 4.24
4185 11175 3.663176 GCTGCTGTCGCCTTTGCA 61.663 61.111 0.00 0.00 37.32 4.08
4192 11182 2.117206 TCGCCTTTGCAATGGGGT 59.883 55.556 33.46 0.00 37.42 4.95
4205 11203 1.877672 ATGGGGTGGCCATCATGTGT 61.878 55.000 20.00 0.00 0.00 3.72
4219 11217 3.058160 GTGTTGCATGCGGCTCCT 61.058 61.111 14.09 0.00 45.15 3.69
4226 11224 1.450134 CATGCGGCTCCTGCACTTA 60.450 57.895 0.00 0.00 46.57 2.24
4240 11238 0.673644 CACTTACCGGGACTGCAAGG 60.674 60.000 6.32 0.00 39.30 3.61
4252 11251 4.410743 GCAAGGACCGCAAGCTGC 62.411 66.667 0.00 0.00 40.69 5.25
4270 11269 4.501714 GACGCGGCCGACCATGTA 62.502 66.667 33.48 0.00 38.29 2.29
4276 11284 1.146041 GGCCGACCATGTATGAGCA 59.854 57.895 0.00 0.00 35.26 4.26
4277 11285 0.882042 GGCCGACCATGTATGAGCAG 60.882 60.000 0.00 0.00 35.26 4.24
4346 11356 2.479560 GGATTTTTGCTACCACCGATGC 60.480 50.000 0.00 0.00 0.00 3.91
4370 11384 2.054799 AGGGAAGTCTGCTACAACCAA 58.945 47.619 0.00 0.00 0.00 3.67
4372 11386 2.152016 GGAAGTCTGCTACAACCAACC 58.848 52.381 0.00 0.00 0.00 3.77
4375 11389 1.666553 TCTGCTACAACCAACCGCG 60.667 57.895 0.00 0.00 0.00 6.46
4379 11393 2.032834 TACAACCAACCGCGGCAT 59.967 55.556 28.58 12.52 0.00 4.40
4384 11398 4.054825 CCAACCGCGGCATGCTTT 62.055 61.111 28.58 8.04 43.27 3.51
4423 11462 1.722011 CAAAGATGCTAACGACCGGT 58.278 50.000 6.92 6.92 0.00 5.28
4469 11510 3.297134 TTTTTGCTGGAACCAGAGAGT 57.703 42.857 22.96 0.00 46.30 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.443329 TCATCGTCCAACCCAATTGATTG 59.557 43.478 7.12 10.79 41.23 2.67
4 5 3.696045 TCATCGTCCAACCCAATTGATT 58.304 40.909 7.12 0.00 41.23 2.57
5 6 3.364460 TCATCGTCCAACCCAATTGAT 57.636 42.857 7.12 0.00 41.23 2.57
6 7 2.869101 TCATCGTCCAACCCAATTGA 57.131 45.000 7.12 0.00 41.23 2.57
7 8 3.081061 TCTTCATCGTCCAACCCAATTG 58.919 45.455 0.00 0.00 38.12 2.32
8 9 3.347216 CTCTTCATCGTCCAACCCAATT 58.653 45.455 0.00 0.00 0.00 2.32
9 10 2.356125 CCTCTTCATCGTCCAACCCAAT 60.356 50.000 0.00 0.00 0.00 3.16
10 11 1.003118 CCTCTTCATCGTCCAACCCAA 59.997 52.381 0.00 0.00 0.00 4.12
11 12 0.613260 CCTCTTCATCGTCCAACCCA 59.387 55.000 0.00 0.00 0.00 4.51
12 13 0.902531 TCCTCTTCATCGTCCAACCC 59.097 55.000 0.00 0.00 0.00 4.11
13 14 1.736032 CGTCCTCTTCATCGTCCAACC 60.736 57.143 0.00 0.00 0.00 3.77
14 15 1.201647 TCGTCCTCTTCATCGTCCAAC 59.798 52.381 0.00 0.00 0.00 3.77
15 16 1.541379 TCGTCCTCTTCATCGTCCAA 58.459 50.000 0.00 0.00 0.00 3.53
16 17 1.763968 ATCGTCCTCTTCATCGTCCA 58.236 50.000 0.00 0.00 0.00 4.02
17 18 4.230657 CAATATCGTCCTCTTCATCGTCC 58.769 47.826 0.00 0.00 0.00 4.79
18 19 4.861210 ACAATATCGTCCTCTTCATCGTC 58.139 43.478 0.00 0.00 0.00 4.20
19 20 4.554919 CGACAATATCGTCCTCTTCATCGT 60.555 45.833 0.00 0.00 46.25 3.73
20 21 3.908978 CGACAATATCGTCCTCTTCATCG 59.091 47.826 0.00 0.00 46.25 3.84
33 34 5.174035 CACTTCCATTCTCGACGACAATATC 59.826 44.000 0.00 0.00 0.00 1.63
34 35 5.043903 CACTTCCATTCTCGACGACAATAT 58.956 41.667 0.00 0.00 0.00 1.28
35 36 4.421058 CACTTCCATTCTCGACGACAATA 58.579 43.478 0.00 0.00 0.00 1.90
36 37 3.254060 CACTTCCATTCTCGACGACAAT 58.746 45.455 0.00 0.00 0.00 2.71
37 38 2.672714 CACTTCCATTCTCGACGACAA 58.327 47.619 0.00 0.00 0.00 3.18
38 39 1.668919 GCACTTCCATTCTCGACGACA 60.669 52.381 0.00 0.00 0.00 4.35
39 40 0.992802 GCACTTCCATTCTCGACGAC 59.007 55.000 0.00 0.00 0.00 4.34
40 41 0.108804 GGCACTTCCATTCTCGACGA 60.109 55.000 0.00 0.00 34.01 4.20
41 42 0.389817 TGGCACTTCCATTCTCGACG 60.390 55.000 0.00 0.00 40.72 5.12
42 43 3.532896 TGGCACTTCCATTCTCGAC 57.467 52.632 0.00 0.00 40.72 4.20
58 59 1.270252 GGTTGTCCTTTGCCACAATGG 60.270 52.381 6.02 6.02 41.55 3.16
59 60 1.688197 AGGTTGTCCTTTGCCACAATG 59.312 47.619 0.00 0.00 42.12 2.82
60 61 1.688197 CAGGTTGTCCTTTGCCACAAT 59.312 47.619 0.00 0.00 43.07 2.71
61 62 1.110442 CAGGTTGTCCTTTGCCACAA 58.890 50.000 0.00 0.00 43.07 3.33
62 63 1.391157 GCAGGTTGTCCTTTGCCACA 61.391 55.000 0.00 0.00 43.07 4.17
63 64 1.363807 GCAGGTTGTCCTTTGCCAC 59.636 57.895 0.00 0.00 43.07 5.01
64 65 0.685785 TTGCAGGTTGTCCTTTGCCA 60.686 50.000 0.00 0.00 43.07 4.92
65 66 0.032540 CTTGCAGGTTGTCCTTTGCC 59.967 55.000 0.00 0.00 43.07 4.52
66 67 0.746659 ACTTGCAGGTTGTCCTTTGC 59.253 50.000 0.00 0.00 43.07 3.68
67 68 2.023673 TGACTTGCAGGTTGTCCTTTG 58.976 47.619 1.80 0.00 43.07 2.77
68 69 2.435372 TGACTTGCAGGTTGTCCTTT 57.565 45.000 1.80 0.00 43.07 3.11
69 70 2.233271 CATGACTTGCAGGTTGTCCTT 58.767 47.619 1.80 0.00 43.07 3.36
70 71 1.546323 CCATGACTTGCAGGTTGTCCT 60.546 52.381 1.80 0.00 46.37 3.85
71 72 0.883833 CCATGACTTGCAGGTTGTCC 59.116 55.000 1.80 0.00 0.00 4.02
72 73 0.883833 CCCATGACTTGCAGGTTGTC 59.116 55.000 1.80 3.76 0.00 3.18
73 74 0.478072 TCCCATGACTTGCAGGTTGT 59.522 50.000 1.80 0.00 0.00 3.32
74 75 1.619654 TTCCCATGACTTGCAGGTTG 58.380 50.000 1.80 0.00 0.00 3.77
75 76 1.963515 GTTTCCCATGACTTGCAGGTT 59.036 47.619 1.80 0.00 0.00 3.50
76 77 1.133513 TGTTTCCCATGACTTGCAGGT 60.134 47.619 0.00 0.00 0.00 4.00
77 78 1.619654 TGTTTCCCATGACTTGCAGG 58.380 50.000 0.00 0.00 0.00 4.85
78 79 2.624838 ACTTGTTTCCCATGACTTGCAG 59.375 45.455 0.00 0.00 0.00 4.41
79 80 2.361757 CACTTGTTTCCCATGACTTGCA 59.638 45.455 0.00 0.00 0.00 4.08
80 81 2.622942 TCACTTGTTTCCCATGACTTGC 59.377 45.455 0.00 0.00 0.00 4.01
81 82 4.136796 TCTCACTTGTTTCCCATGACTTG 58.863 43.478 0.00 0.00 0.00 3.16
82 83 4.103153 TCTCTCACTTGTTTCCCATGACTT 59.897 41.667 0.00 0.00 0.00 3.01
83 84 3.648067 TCTCTCACTTGTTTCCCATGACT 59.352 43.478 0.00 0.00 0.00 3.41
84 85 4.008074 TCTCTCACTTGTTTCCCATGAC 57.992 45.455 0.00 0.00 0.00 3.06
85 86 4.505566 CCTTCTCTCACTTGTTTCCCATGA 60.506 45.833 0.00 0.00 0.00 3.07
86 87 3.755378 CCTTCTCTCACTTGTTTCCCATG 59.245 47.826 0.00 0.00 0.00 3.66
87 88 3.812167 GCCTTCTCTCACTTGTTTCCCAT 60.812 47.826 0.00 0.00 0.00 4.00
88 89 2.487265 GCCTTCTCTCACTTGTTTCCCA 60.487 50.000 0.00 0.00 0.00 4.37
89 90 2.155279 GCCTTCTCTCACTTGTTTCCC 58.845 52.381 0.00 0.00 0.00 3.97
90 91 2.851195 TGCCTTCTCTCACTTGTTTCC 58.149 47.619 0.00 0.00 0.00 3.13
91 92 4.130118 TCTTGCCTTCTCTCACTTGTTTC 58.870 43.478 0.00 0.00 0.00 2.78
92 93 4.133078 CTCTTGCCTTCTCTCACTTGTTT 58.867 43.478 0.00 0.00 0.00 2.83
93 94 3.737850 CTCTTGCCTTCTCTCACTTGTT 58.262 45.455 0.00 0.00 0.00 2.83
94 95 2.549778 GCTCTTGCCTTCTCTCACTTGT 60.550 50.000 0.00 0.00 0.00 3.16
95 96 2.075338 GCTCTTGCCTTCTCTCACTTG 58.925 52.381 0.00 0.00 0.00 3.16
96 97 1.696336 TGCTCTTGCCTTCTCTCACTT 59.304 47.619 0.00 0.00 38.71 3.16
97 98 1.346062 TGCTCTTGCCTTCTCTCACT 58.654 50.000 0.00 0.00 38.71 3.41
98 99 2.278854 GATGCTCTTGCCTTCTCTCAC 58.721 52.381 0.00 0.00 38.71 3.51
99 100 1.209019 GGATGCTCTTGCCTTCTCTCA 59.791 52.381 0.00 0.00 38.71 3.27
100 101 1.474855 GGGATGCTCTTGCCTTCTCTC 60.475 57.143 0.00 0.00 38.71 3.20
101 102 0.545646 GGGATGCTCTTGCCTTCTCT 59.454 55.000 0.00 0.00 38.71 3.10
102 103 0.813210 CGGGATGCTCTTGCCTTCTC 60.813 60.000 0.00 0.00 38.71 2.87
103 104 1.222936 CGGGATGCTCTTGCCTTCT 59.777 57.895 0.00 0.00 38.71 2.85
104 105 1.078143 ACGGGATGCTCTTGCCTTC 60.078 57.895 0.00 0.00 38.71 3.46
105 106 1.377725 CACGGGATGCTCTTGCCTT 60.378 57.895 0.00 0.00 38.71 4.35
106 107 2.270205 CACGGGATGCTCTTGCCT 59.730 61.111 0.00 0.00 38.71 4.75
107 108 2.109126 GTCACGGGATGCTCTTGCC 61.109 63.158 0.00 0.00 38.71 4.52
108 109 2.456119 CGTCACGGGATGCTCTTGC 61.456 63.158 0.00 0.00 40.20 4.01
109 110 3.786101 CGTCACGGGATGCTCTTG 58.214 61.111 0.00 0.00 0.00 3.02
121 122 4.092383 ACATTTTTATAGTCGTGGCGTCAC 59.908 41.667 10.89 10.89 40.36 3.67
122 123 4.247258 ACATTTTTATAGTCGTGGCGTCA 58.753 39.130 0.00 0.00 0.00 4.35
123 124 4.260091 GGACATTTTTATAGTCGTGGCGTC 60.260 45.833 0.00 0.00 33.18 5.19
124 125 3.619929 GGACATTTTTATAGTCGTGGCGT 59.380 43.478 0.00 0.00 33.18 5.68
125 126 3.869246 AGGACATTTTTATAGTCGTGGCG 59.131 43.478 0.00 0.00 33.18 5.69
126 127 4.272748 GGAGGACATTTTTATAGTCGTGGC 59.727 45.833 0.00 0.00 33.18 5.01
127 128 5.293569 GTGGAGGACATTTTTATAGTCGTGG 59.706 44.000 0.00 0.00 33.18 4.94
128 129 5.872617 TGTGGAGGACATTTTTATAGTCGTG 59.127 40.000 0.00 0.00 33.18 4.35
129 130 6.045072 TGTGGAGGACATTTTTATAGTCGT 57.955 37.500 0.00 0.00 33.18 4.34
130 131 6.017934 CCATGTGGAGGACATTTTTATAGTCG 60.018 42.308 0.00 0.00 43.20 4.18
131 132 7.054124 TCCATGTGGAGGACATTTTTATAGTC 58.946 38.462 0.00 0.00 43.20 2.59
132 133 6.969043 TCCATGTGGAGGACATTTTTATAGT 58.031 36.000 0.00 0.00 43.20 2.12
145 146 2.947938 GATGCCCGTCCATGTGGAGG 62.948 65.000 13.42 13.42 46.49 4.30
146 147 1.524621 GATGCCCGTCCATGTGGAG 60.525 63.158 1.07 0.00 46.49 3.86
147 148 1.634865 ATGATGCCCGTCCATGTGGA 61.635 55.000 0.00 0.00 43.08 4.02
148 149 0.752743 AATGATGCCCGTCCATGTGG 60.753 55.000 0.00 0.00 0.00 4.17
149 150 1.066002 GAAATGATGCCCGTCCATGTG 59.934 52.381 0.00 0.00 0.00 3.21
150 151 1.064463 AGAAATGATGCCCGTCCATGT 60.064 47.619 0.00 0.00 0.00 3.21
151 152 1.335810 CAGAAATGATGCCCGTCCATG 59.664 52.381 0.00 0.00 0.00 3.66
152 153 1.683943 CAGAAATGATGCCCGTCCAT 58.316 50.000 0.00 0.00 0.00 3.41
153 154 1.031571 GCAGAAATGATGCCCGTCCA 61.032 55.000 0.00 0.00 37.73 4.02
154 155 1.729881 GCAGAAATGATGCCCGTCC 59.270 57.895 0.00 0.00 37.73 4.79
155 156 1.089481 TCGCAGAAATGATGCCCGTC 61.089 55.000 0.00 0.00 40.67 4.79
156 157 1.078497 TCGCAGAAATGATGCCCGT 60.078 52.632 0.00 0.00 40.67 5.28
157 158 1.645455 CTCGCAGAAATGATGCCCG 59.355 57.895 0.00 0.00 40.67 6.13
158 159 1.450531 CCCTCGCAGAAATGATGCCC 61.451 60.000 0.00 0.00 40.67 5.36
159 160 0.464373 TCCCTCGCAGAAATGATGCC 60.464 55.000 0.00 0.00 40.67 4.40
160 161 0.942962 CTCCCTCGCAGAAATGATGC 59.057 55.000 0.00 0.00 40.35 3.91
161 162 2.609427 TCTCCCTCGCAGAAATGATG 57.391 50.000 0.00 0.00 34.09 3.07
162 163 2.237143 TGTTCTCCCTCGCAGAAATGAT 59.763 45.455 0.00 0.00 34.09 2.45
163 164 1.623311 TGTTCTCCCTCGCAGAAATGA 59.377 47.619 0.00 0.00 34.09 2.57
164 165 2.099141 TGTTCTCCCTCGCAGAAATG 57.901 50.000 0.00 0.00 34.09 2.32
165 166 2.303022 TCTTGTTCTCCCTCGCAGAAAT 59.697 45.455 0.00 0.00 34.09 2.17
166 167 1.691976 TCTTGTTCTCCCTCGCAGAAA 59.308 47.619 0.00 0.00 34.09 2.52
167 168 1.000955 GTCTTGTTCTCCCTCGCAGAA 59.999 52.381 0.00 0.00 34.09 3.02
168 169 0.603569 GTCTTGTTCTCCCTCGCAGA 59.396 55.000 0.00 0.00 0.00 4.26
169 170 0.734253 CGTCTTGTTCTCCCTCGCAG 60.734 60.000 0.00 0.00 0.00 5.18
170 171 1.176619 TCGTCTTGTTCTCCCTCGCA 61.177 55.000 0.00 0.00 0.00 5.10
171 172 0.456995 CTCGTCTTGTTCTCCCTCGC 60.457 60.000 0.00 0.00 0.00 5.03
172 173 1.131504 CTCTCGTCTTGTTCTCCCTCG 59.868 57.143 0.00 0.00 0.00 4.63
173 174 2.438411 TCTCTCGTCTTGTTCTCCCTC 58.562 52.381 0.00 0.00 0.00 4.30
174 175 2.588464 TCTCTCGTCTTGTTCTCCCT 57.412 50.000 0.00 0.00 0.00 4.20
175 176 3.695060 TGTATCTCTCGTCTTGTTCTCCC 59.305 47.826 0.00 0.00 0.00 4.30
176 177 4.966965 TGTATCTCTCGTCTTGTTCTCC 57.033 45.455 0.00 0.00 0.00 3.71
177 178 6.383415 AGTTTGTATCTCTCGTCTTGTTCTC 58.617 40.000 0.00 0.00 0.00 2.87
178 179 6.334102 AGTTTGTATCTCTCGTCTTGTTCT 57.666 37.500 0.00 0.00 0.00 3.01
179 180 5.284188 CGAGTTTGTATCTCTCGTCTTGTTC 59.716 44.000 0.00 0.00 43.69 3.18
180 181 5.154932 CGAGTTTGTATCTCTCGTCTTGTT 58.845 41.667 0.00 0.00 43.69 2.83
181 182 4.724303 CGAGTTTGTATCTCTCGTCTTGT 58.276 43.478 0.00 0.00 43.69 3.16
188 189 4.806330 TCCAACACGAGTTTGTATCTCTC 58.194 43.478 0.00 0.00 35.28 3.20
189 190 4.866508 TCCAACACGAGTTTGTATCTCT 57.133 40.909 0.00 0.00 35.28 3.10
190 191 4.201724 GCATCCAACACGAGTTTGTATCTC 60.202 45.833 0.00 0.00 35.28 2.75
191 192 3.684788 GCATCCAACACGAGTTTGTATCT 59.315 43.478 0.00 0.00 35.28 1.98
192 193 3.483574 CGCATCCAACACGAGTTTGTATC 60.484 47.826 0.00 0.00 35.28 2.24
193 194 2.415168 CGCATCCAACACGAGTTTGTAT 59.585 45.455 0.00 0.00 35.28 2.29
194 195 1.795872 CGCATCCAACACGAGTTTGTA 59.204 47.619 0.00 0.00 35.28 2.41
195 196 0.586319 CGCATCCAACACGAGTTTGT 59.414 50.000 0.00 0.00 35.28 2.83
196 197 0.725784 GCGCATCCAACACGAGTTTG 60.726 55.000 0.30 0.00 35.28 2.93
197 198 1.163420 TGCGCATCCAACACGAGTTT 61.163 50.000 5.66 0.00 35.28 2.66
198 199 1.163420 TTGCGCATCCAACACGAGTT 61.163 50.000 12.75 0.00 38.88 3.01
199 200 1.163420 TTTGCGCATCCAACACGAGT 61.163 50.000 12.75 0.00 0.00 4.18
200 201 0.040514 TTTTGCGCATCCAACACGAG 60.041 50.000 12.75 0.00 0.00 4.18
201 202 0.040514 CTTTTGCGCATCCAACACGA 60.041 50.000 12.75 0.00 0.00 4.35
202 203 0.317770 ACTTTTGCGCATCCAACACG 60.318 50.000 12.75 0.00 0.00 4.49
203 204 2.031157 ACTACTTTTGCGCATCCAACAC 60.031 45.455 12.75 0.00 0.00 3.32
204 205 2.226330 ACTACTTTTGCGCATCCAACA 58.774 42.857 12.75 0.00 0.00 3.33
205 206 2.989422 ACTACTTTTGCGCATCCAAC 57.011 45.000 12.75 0.00 0.00 3.77
206 207 3.637432 CAAACTACTTTTGCGCATCCAA 58.363 40.909 12.75 0.00 38.37 3.53
207 208 3.281341 CAAACTACTTTTGCGCATCCA 57.719 42.857 12.75 0.00 38.37 3.41
216 217 7.724305 ACACGTCATGATACAAACTACTTTT 57.276 32.000 0.00 0.00 0.00 2.27
217 218 8.869897 CATACACGTCATGATACAAACTACTTT 58.130 33.333 0.00 0.00 0.00 2.66
218 219 7.491372 CCATACACGTCATGATACAAACTACTT 59.509 37.037 0.00 0.00 0.00 2.24
219 220 6.978659 CCATACACGTCATGATACAAACTACT 59.021 38.462 0.00 0.00 0.00 2.57
220 221 6.976349 TCCATACACGTCATGATACAAACTAC 59.024 38.462 0.00 0.00 0.00 2.73
221 222 7.102847 TCCATACACGTCATGATACAAACTA 57.897 36.000 0.00 0.00 0.00 2.24
222 223 5.972935 TCCATACACGTCATGATACAAACT 58.027 37.500 0.00 0.00 0.00 2.66
223 224 5.810587 ACTCCATACACGTCATGATACAAAC 59.189 40.000 0.00 0.00 0.00 2.93
224 225 5.972935 ACTCCATACACGTCATGATACAAA 58.027 37.500 0.00 0.00 0.00 2.83
225 226 5.592104 ACTCCATACACGTCATGATACAA 57.408 39.130 0.00 0.00 0.00 2.41
226 227 5.592104 AACTCCATACACGTCATGATACA 57.408 39.130 0.00 0.00 0.00 2.29
227 228 8.487970 CAATAAACTCCATACACGTCATGATAC 58.512 37.037 0.00 0.00 0.00 2.24
228 229 8.201464 ACAATAAACTCCATACACGTCATGATA 58.799 33.333 0.00 0.00 0.00 2.15
229 230 7.047891 ACAATAAACTCCATACACGTCATGAT 58.952 34.615 0.00 0.00 0.00 2.45
230 231 6.403049 ACAATAAACTCCATACACGTCATGA 58.597 36.000 8.00 0.00 0.00 3.07
231 232 6.662414 ACAATAAACTCCATACACGTCATG 57.338 37.500 0.00 0.00 0.00 3.07
232 233 7.389330 TGAAACAATAAACTCCATACACGTCAT 59.611 33.333 0.00 0.00 0.00 3.06
233 234 6.706716 TGAAACAATAAACTCCATACACGTCA 59.293 34.615 0.00 0.00 0.00 4.35
234 235 7.124347 TGAAACAATAAACTCCATACACGTC 57.876 36.000 0.00 0.00 0.00 4.34
235 236 7.412563 CGATGAAACAATAAACTCCATACACGT 60.413 37.037 0.00 0.00 0.00 4.49
236 237 6.899771 CGATGAAACAATAAACTCCATACACG 59.100 38.462 0.00 0.00 0.00 4.49
237 238 7.065324 TCCGATGAAACAATAAACTCCATACAC 59.935 37.037 0.00 0.00 0.00 2.90
238 239 7.065324 GTCCGATGAAACAATAAACTCCATACA 59.935 37.037 0.00 0.00 0.00 2.29
239 240 7.407337 GTCCGATGAAACAATAAACTCCATAC 58.593 38.462 0.00 0.00 0.00 2.39
240 241 6.256975 CGTCCGATGAAACAATAAACTCCATA 59.743 38.462 0.00 0.00 0.00 2.74
241 242 5.064707 CGTCCGATGAAACAATAAACTCCAT 59.935 40.000 0.00 0.00 0.00 3.41
242 243 4.390603 CGTCCGATGAAACAATAAACTCCA 59.609 41.667 0.00 0.00 0.00 3.86
243 244 4.628333 TCGTCCGATGAAACAATAAACTCC 59.372 41.667 0.00 0.00 0.00 3.85
244 245 5.575606 TCTCGTCCGATGAAACAATAAACTC 59.424 40.000 0.00 0.00 0.00 3.01
245 246 5.475719 TCTCGTCCGATGAAACAATAAACT 58.524 37.500 0.00 0.00 0.00 2.66
246 247 5.575606 TCTCTCGTCCGATGAAACAATAAAC 59.424 40.000 0.00 0.00 0.00 2.01
247 248 5.716094 TCTCTCGTCCGATGAAACAATAAA 58.284 37.500 0.00 0.00 0.00 1.40
248 249 5.319140 TCTCTCGTCCGATGAAACAATAA 57.681 39.130 0.00 0.00 0.00 1.40
249 250 4.976224 TCTCTCGTCCGATGAAACAATA 57.024 40.909 0.00 0.00 0.00 1.90
250 251 3.868757 TCTCTCGTCCGATGAAACAAT 57.131 42.857 0.00 0.00 0.00 2.71
251 252 3.868757 ATCTCTCGTCCGATGAAACAA 57.131 42.857 0.00 0.00 0.00 2.83
252 253 3.692593 TGTATCTCTCGTCCGATGAAACA 59.307 43.478 0.00 0.00 0.00 2.83
253 254 4.288670 TGTATCTCTCGTCCGATGAAAC 57.711 45.455 0.00 0.00 0.00 2.78
254 255 4.976224 TTGTATCTCTCGTCCGATGAAA 57.024 40.909 0.00 0.00 0.00 2.69
255 256 4.398358 AGTTTGTATCTCTCGTCCGATGAA 59.602 41.667 0.00 0.00 0.00 2.57
256 257 3.945921 AGTTTGTATCTCTCGTCCGATGA 59.054 43.478 0.00 0.00 0.00 2.92
257 258 4.035792 AGAGTTTGTATCTCTCGTCCGATG 59.964 45.833 0.00 0.00 37.70 3.84
258 259 4.035792 CAGAGTTTGTATCTCTCGTCCGAT 59.964 45.833 0.00 0.00 39.84 4.18
259 260 3.374367 CAGAGTTTGTATCTCTCGTCCGA 59.626 47.826 0.00 0.00 39.84 4.55
260 261 3.686128 CAGAGTTTGTATCTCTCGTCCG 58.314 50.000 0.00 0.00 39.84 4.79
261 262 3.119459 TGCAGAGTTTGTATCTCTCGTCC 60.119 47.826 0.00 0.00 39.84 4.79
262 263 3.854809 GTGCAGAGTTTGTATCTCTCGTC 59.145 47.826 0.00 0.00 39.84 4.20
263 264 3.255888 TGTGCAGAGTTTGTATCTCTCGT 59.744 43.478 0.00 0.00 39.84 4.18
264 265 3.838120 TGTGCAGAGTTTGTATCTCTCG 58.162 45.455 0.00 0.00 39.84 4.04
265 266 4.808364 GGATGTGCAGAGTTTGTATCTCTC 59.192 45.833 0.00 0.00 39.84 3.20
266 267 4.223700 TGGATGTGCAGAGTTTGTATCTCT 59.776 41.667 0.00 0.00 42.16 3.10
267 268 4.331168 GTGGATGTGCAGAGTTTGTATCTC 59.669 45.833 0.00 0.00 0.00 2.75
268 269 4.256920 GTGGATGTGCAGAGTTTGTATCT 58.743 43.478 0.00 0.00 0.00 1.98
269 270 4.002982 TGTGGATGTGCAGAGTTTGTATC 58.997 43.478 0.00 0.00 0.00 2.24
270 271 3.753272 GTGTGGATGTGCAGAGTTTGTAT 59.247 43.478 0.00 0.00 0.00 2.29
271 272 3.138304 GTGTGGATGTGCAGAGTTTGTA 58.862 45.455 0.00 0.00 0.00 2.41
272 273 1.949525 GTGTGGATGTGCAGAGTTTGT 59.050 47.619 0.00 0.00 0.00 2.83
273 274 1.948834 TGTGTGGATGTGCAGAGTTTG 59.051 47.619 0.00 0.00 0.00 2.93
274 275 1.949525 GTGTGTGGATGTGCAGAGTTT 59.050 47.619 0.00 0.00 0.00 2.66
275 276 1.597742 GTGTGTGGATGTGCAGAGTT 58.402 50.000 0.00 0.00 0.00 3.01
276 277 0.250467 GGTGTGTGGATGTGCAGAGT 60.250 55.000 0.00 0.00 0.00 3.24
277 278 0.035881 AGGTGTGTGGATGTGCAGAG 59.964 55.000 0.00 0.00 0.00 3.35
278 279 0.035317 GAGGTGTGTGGATGTGCAGA 59.965 55.000 0.00 0.00 0.00 4.26
279 280 0.250424 TGAGGTGTGTGGATGTGCAG 60.250 55.000 0.00 0.00 0.00 4.41
280 281 0.182299 TTGAGGTGTGTGGATGTGCA 59.818 50.000 0.00 0.00 0.00 4.57
281 282 0.877071 CTTGAGGTGTGTGGATGTGC 59.123 55.000 0.00 0.00 0.00 4.57
282 283 2.420642 CTCTTGAGGTGTGTGGATGTG 58.579 52.381 0.00 0.00 0.00 3.21
283 284 1.271054 GCTCTTGAGGTGTGTGGATGT 60.271 52.381 0.00 0.00 0.00 3.06
284 285 1.271001 TGCTCTTGAGGTGTGTGGATG 60.271 52.381 0.00 0.00 0.00 3.51
285 286 1.059098 TGCTCTTGAGGTGTGTGGAT 58.941 50.000 0.00 0.00 0.00 3.41
286 287 1.002430 GATGCTCTTGAGGTGTGTGGA 59.998 52.381 0.00 0.00 0.00 4.02
287 288 1.002888 AGATGCTCTTGAGGTGTGTGG 59.997 52.381 0.00 0.00 0.00 4.17
288 289 2.469274 AGATGCTCTTGAGGTGTGTG 57.531 50.000 0.00 0.00 0.00 3.82
289 290 2.899900 TGTAGATGCTCTTGAGGTGTGT 59.100 45.455 0.00 0.00 0.00 3.72
290 291 3.599730 TGTAGATGCTCTTGAGGTGTG 57.400 47.619 0.00 0.00 0.00 3.82
291 292 4.040952 ACTTTGTAGATGCTCTTGAGGTGT 59.959 41.667 0.00 0.00 0.00 4.16
292 293 4.573900 ACTTTGTAGATGCTCTTGAGGTG 58.426 43.478 0.00 0.00 0.00 4.00
293 294 4.899352 ACTTTGTAGATGCTCTTGAGGT 57.101 40.909 0.00 0.00 0.00 3.85
294 295 6.876257 AGTAAACTTTGTAGATGCTCTTGAGG 59.124 38.462 0.00 0.00 0.00 3.86
295 296 7.386299 ACAGTAAACTTTGTAGATGCTCTTGAG 59.614 37.037 0.00 0.00 0.00 3.02
296 297 7.217200 ACAGTAAACTTTGTAGATGCTCTTGA 58.783 34.615 0.00 0.00 0.00 3.02
297 298 7.426929 ACAGTAAACTTTGTAGATGCTCTTG 57.573 36.000 0.00 0.00 0.00 3.02
298 299 8.451908 AAACAGTAAACTTTGTAGATGCTCTT 57.548 30.769 0.00 0.00 0.00 2.85
299 300 8.345565 CAAAACAGTAAACTTTGTAGATGCTCT 58.654 33.333 0.00 0.00 0.00 4.09
300 301 8.342634 TCAAAACAGTAAACTTTGTAGATGCTC 58.657 33.333 0.00 0.00 32.92 4.26
301 302 8.129211 GTCAAAACAGTAAACTTTGTAGATGCT 58.871 33.333 0.00 0.00 32.92 3.79
302 303 8.129211 AGTCAAAACAGTAAACTTTGTAGATGC 58.871 33.333 0.00 0.00 32.92 3.91
303 304 9.651718 GAGTCAAAACAGTAAACTTTGTAGATG 57.348 33.333 0.00 0.00 32.92 2.90
304 305 9.391006 TGAGTCAAAACAGTAAACTTTGTAGAT 57.609 29.630 0.00 0.00 32.92 1.98
305 306 8.780846 TGAGTCAAAACAGTAAACTTTGTAGA 57.219 30.769 0.00 0.00 32.92 2.59
343 344 3.389329 GGACATCTAAGAAGCTCATGGGA 59.611 47.826 0.00 0.00 0.00 4.37
346 347 4.313277 TCGGACATCTAAGAAGCTCATG 57.687 45.455 0.00 0.00 0.00 3.07
347 348 4.160439 TGTTCGGACATCTAAGAAGCTCAT 59.840 41.667 0.00 0.00 0.00 2.90
348 349 3.509967 TGTTCGGACATCTAAGAAGCTCA 59.490 43.478 0.00 0.00 0.00 4.26
349 350 4.111375 TGTTCGGACATCTAAGAAGCTC 57.889 45.455 0.00 0.00 0.00 4.09
350 351 4.499183 CTTGTTCGGACATCTAAGAAGCT 58.501 43.478 0.00 0.00 35.29 3.74
351 352 3.062774 GCTTGTTCGGACATCTAAGAAGC 59.937 47.826 0.00 0.00 40.71 3.86
353 354 4.021456 TCAGCTTGTTCGGACATCTAAGAA 60.021 41.667 0.00 0.00 35.29 2.52
356 357 3.953712 TCAGCTTGTTCGGACATCTAA 57.046 42.857 0.00 0.00 35.29 2.10
357 358 3.953712 TTCAGCTTGTTCGGACATCTA 57.046 42.857 0.00 0.00 35.29 1.98
358 359 2.839486 TTCAGCTTGTTCGGACATCT 57.161 45.000 0.00 0.00 35.29 2.90
383 384 1.221466 CCAGTGCGTGATGTTCGTGT 61.221 55.000 0.00 0.00 0.00 4.49
387 388 0.602638 TGGTCCAGTGCGTGATGTTC 60.603 55.000 0.00 0.00 0.00 3.18
396 397 4.898607 TGGAAGTTGGTCCAGTGC 57.101 55.556 0.00 0.00 42.97 4.40
447 451 7.658179 TCTGCATCCGATGAATAGTAAATTC 57.342 36.000 12.79 0.00 0.00 2.17
456 460 3.766068 ACTCATCTGCATCCGATGAAT 57.234 42.857 12.79 5.74 44.62 2.57
459 463 2.289820 CCAAACTCATCTGCATCCGATG 59.710 50.000 7.87 7.87 39.62 3.84
460 464 2.171237 TCCAAACTCATCTGCATCCGAT 59.829 45.455 0.00 0.00 0.00 4.18
461 465 1.554617 TCCAAACTCATCTGCATCCGA 59.445 47.619 0.00 0.00 0.00 4.55
465 470 2.440409 GGTGTCCAAACTCATCTGCAT 58.560 47.619 0.00 0.00 0.00 3.96
476 481 5.257262 TGGATATTCAATTCGGTGTCCAAA 58.743 37.500 0.00 0.00 32.02 3.28
477 482 4.849518 TGGATATTCAATTCGGTGTCCAA 58.150 39.130 0.00 0.00 32.02 3.53
478 483 4.495690 TGGATATTCAATTCGGTGTCCA 57.504 40.909 0.00 0.00 32.48 4.02
479 484 6.391227 AAATGGATATTCAATTCGGTGTCC 57.609 37.500 0.00 0.00 0.00 4.02
481 486 8.966868 ACTTAAAATGGATATTCAATTCGGTGT 58.033 29.630 0.00 0.00 0.00 4.16
528 533 5.021458 TCGAGTAAGAAATTGGTACTCCCT 58.979 41.667 13.68 0.00 40.33 4.20
549 554 6.096036 TGGCACCATGTAAAAATGTTAATCG 58.904 36.000 0.00 0.00 0.00 3.34
550 555 7.897575 TTGGCACCATGTAAAAATGTTAATC 57.102 32.000 0.00 0.00 0.00 1.75
551 556 8.860780 ATTTGGCACCATGTAAAAATGTTAAT 57.139 26.923 0.00 0.00 0.00 1.40
553 558 8.682936 AAATTTGGCACCATGTAAAAATGTTA 57.317 26.923 0.00 0.00 0.00 2.41
554 559 7.579761 AAATTTGGCACCATGTAAAAATGTT 57.420 28.000 0.00 0.00 0.00 2.71
565 574 7.906327 AGATAAACTGTAAAATTTGGCACCAT 58.094 30.769 0.00 0.00 0.00 3.55
589 598 9.994432 CAAAGTTATCTAGAAAAATGGCACTAG 57.006 33.333 0.00 0.00 35.19 2.57
625 634 0.853530 AGCCCTGACTTTTCTTGGGT 59.146 50.000 0.00 0.00 38.04 4.51
637 646 4.371975 CGTTTTCGGAAGCCCTGA 57.628 55.556 0.00 0.00 39.94 3.86
667 1789 0.537653 GGAGCTAAACTTCCGCCTCT 59.462 55.000 0.00 0.00 0.00 3.69
669 1791 1.218316 CGGAGCTAAACTTCCGCCT 59.782 57.895 0.00 0.00 38.95 5.52
672 1794 0.459759 GGGTCGGAGCTAAACTTCCG 60.460 60.000 7.19 6.59 46.06 4.30
673 1795 0.107800 GGGGTCGGAGCTAAACTTCC 60.108 60.000 7.19 0.00 0.00 3.46
687 1809 2.358737 CACAACAGAGGCGGGGTC 60.359 66.667 0.00 0.00 0.00 4.46
750 1876 9.851043 GTATAACAAAATTATTCAGCTCGACTC 57.149 33.333 0.00 0.00 0.00 3.36
779 1905 0.396974 AGCTTCTCTCTCGCCTCCAT 60.397 55.000 0.00 0.00 0.00 3.41
907 2040 0.322975 CTGTGGAGTGGAAGTGGAGG 59.677 60.000 0.00 0.00 0.00 4.30
945 2083 8.450964 TCTTCTAGATCCAACGCAAAATTTAAG 58.549 33.333 0.00 0.00 0.00 1.85
954 2098 1.137086 GGCTCTTCTAGATCCAACGCA 59.863 52.381 0.00 0.00 31.05 5.24
956 2100 2.801342 GCAGGCTCTTCTAGATCCAACG 60.801 54.545 0.00 0.00 33.06 4.10
957 2101 2.484594 GGCAGGCTCTTCTAGATCCAAC 60.485 54.545 0.00 0.00 33.06 3.77
958 2102 1.765314 GGCAGGCTCTTCTAGATCCAA 59.235 52.381 0.00 0.00 33.06 3.53
960 2104 1.344114 CTGGCAGGCTCTTCTAGATCC 59.656 57.143 6.61 0.00 30.80 3.36
961 2105 2.035832 GACTGGCAGGCTCTTCTAGATC 59.964 54.545 20.34 0.00 0.00 2.75
962 2106 2.038659 GACTGGCAGGCTCTTCTAGAT 58.961 52.381 20.34 0.00 0.00 1.98
963 2107 1.006519 AGACTGGCAGGCTCTTCTAGA 59.993 52.381 19.53 0.00 0.00 2.43
964 2108 1.484038 AGACTGGCAGGCTCTTCTAG 58.516 55.000 19.53 0.00 0.00 2.43
965 2109 1.944177 AAGACTGGCAGGCTCTTCTA 58.056 50.000 25.89 0.00 27.04 2.10
966 2110 1.063183 AAAGACTGGCAGGCTCTTCT 58.937 50.000 25.89 11.23 27.04 2.85
967 2111 1.163554 CAAAGACTGGCAGGCTCTTC 58.836 55.000 25.89 8.77 27.04 2.87
968 2112 0.767375 TCAAAGACTGGCAGGCTCTT 59.233 50.000 25.89 18.34 27.04 2.85
992 2136 2.019984 GGACCATCTCCATTGTTGAGC 58.980 52.381 0.00 0.00 39.21 4.26
1020 2164 0.884704 CACCGGTACAGTTTGCTGCT 60.885 55.000 6.87 0.00 46.30 4.24
1666 2822 9.631452 GATCCTAAAGAAAACTGGATTCAAAAG 57.369 33.333 0.00 0.00 37.62 2.27
1671 2827 8.454894 GTCAAGATCCTAAAGAAAACTGGATTC 58.545 37.037 0.00 0.00 37.62 2.52
1708 2864 1.401905 GCAACATGATTCGAAGGACCC 59.598 52.381 3.35 0.00 0.00 4.46
1709 2865 2.083774 TGCAACATGATTCGAAGGACC 58.916 47.619 3.35 0.00 0.00 4.46
1710 2866 2.474526 CGTGCAACATGATTCGAAGGAC 60.475 50.000 3.35 0.00 35.74 3.85
1711 2867 1.731709 CGTGCAACATGATTCGAAGGA 59.268 47.619 3.35 0.00 35.74 3.36
1773 2929 8.293867 TGTACCACAAGAAAGCACAATTATAAC 58.706 33.333 0.00 0.00 0.00 1.89
1800 2956 8.037758 TGGGTTGCATCGACAATTAAATATTTT 58.962 29.630 5.91 0.00 0.00 1.82
1878 3041 3.840666 AGAGAGAGGTGGTAGCATTTTGA 59.159 43.478 0.00 0.00 0.00 2.69
1952 3115 7.015098 TCAGGAATCAAACCACATGTTTAACAT 59.985 33.333 4.56 4.56 45.35 2.71
1995 3165 3.917629 TGTTTGGATGGTTAGGAGGGTAA 59.082 43.478 0.00 0.00 0.00 2.85
2065 3561 2.762472 CGACAAATCGCAACTAGCTTG 58.238 47.619 0.00 0.00 42.43 4.01
2151 3649 5.065914 AGTAGCAGAGTTCAAGCATTTCAA 58.934 37.500 0.00 0.00 0.00 2.69
2239 3769 2.301346 CCCCAAGTCATATTCTGGCAC 58.699 52.381 0.00 0.00 0.00 5.01
2268 3802 8.869897 CACACGACATTAGTACTTTGTAATGAT 58.130 33.333 18.61 6.88 38.43 2.45
2287 3821 0.391661 AGCCATCATGGACACACGAC 60.392 55.000 8.30 0.00 40.96 4.34
2360 3895 3.452264 CCTGTGGTGGATGATGAACTCTA 59.548 47.826 0.00 0.00 0.00 2.43
2450 4083 0.954452 CCTTTGGAGTGTGAGCAACC 59.046 55.000 0.00 0.00 0.00 3.77
2503 4136 0.036388 ATGTCTTGGGGTAGTGTGCG 60.036 55.000 0.00 0.00 0.00 5.34
2509 4142 6.588719 TTTCATTTTCATGTCTTGGGGTAG 57.411 37.500 0.00 0.00 0.00 3.18
2552 4352 4.331168 GTCAAGCTGTTGTATCCTGCTTAG 59.669 45.833 0.00 0.00 42.77 2.18
2590 4424 1.283613 ACCATGCTAATCCGAACCCAA 59.716 47.619 0.00 0.00 0.00 4.12
2604 4438 2.042686 TTCCAGCAGTATCACCATGC 57.957 50.000 0.00 0.00 40.29 4.06
2609 4837 5.627499 TTCAACATTTCCAGCAGTATCAC 57.373 39.130 0.00 0.00 0.00 3.06
2960 5315 4.753233 TCTGAAGCAGCATAAGAGAGAAC 58.247 43.478 0.00 0.00 0.00 3.01
3036 5391 0.323629 TCAAGGTCTGGCTTTACCCG 59.676 55.000 0.00 0.00 37.83 5.28
3197 5552 2.123854 TCGGCCCAGTAGAGCGAT 60.124 61.111 0.00 0.00 0.00 4.58
3572 5927 1.548719 ACATCGACGGACTCAAATCCA 59.451 47.619 0.00 0.00 38.87 3.41
3745 6104 5.541258 AGCATCCATATTCCCCATGTATT 57.459 39.130 0.00 0.00 0.00 1.89
3804 6164 5.578336 GCTTTCTGGGATTATTTCAGTTTGC 59.422 40.000 0.00 0.00 0.00 3.68
3844 6204 3.009033 TCACATTGAGGAAACCGGAATCT 59.991 43.478 9.46 0.00 0.00 2.40
3850 6210 6.918892 TGTAATATCACATTGAGGAAACCG 57.081 37.500 0.00 0.00 0.00 4.44
3933 10905 2.898920 CTAGGACGCGTGGGTAGGGA 62.899 65.000 20.70 0.00 0.00 4.20
3938 10910 3.379445 CCACTAGGACGCGTGGGT 61.379 66.667 20.70 6.84 45.39 4.51
3964 10936 1.777272 ACAGAAAGGAAAGAGGGCAGT 59.223 47.619 0.00 0.00 0.00 4.40
3966 10938 4.567747 GGATAACAGAAAGGAAAGAGGGCA 60.568 45.833 0.00 0.00 0.00 5.36
3982 10956 3.537337 TGGAAAGAGGAAGGGGATAACA 58.463 45.455 0.00 0.00 0.00 2.41
3983 10958 4.586306 TTGGAAAGAGGAAGGGGATAAC 57.414 45.455 0.00 0.00 0.00 1.89
4007 10983 0.450583 TCGTCGGAATGGTCGAGAAG 59.549 55.000 0.00 0.00 37.31 2.85
4018 10994 0.453282 CGCTAGTTCGTTCGTCGGAA 60.453 55.000 0.00 0.00 40.32 4.30
4019 10995 1.133253 CGCTAGTTCGTTCGTCGGA 59.867 57.895 0.00 0.00 40.32 4.55
4020 10996 1.154338 ACGCTAGTTCGTTCGTCGG 60.154 57.895 0.00 0.00 40.07 4.79
4021 10997 4.429561 ACGCTAGTTCGTTCGTCG 57.570 55.556 0.00 0.00 40.07 5.12
4065 11041 2.103373 GGAAAGAAGGATTGAAGGGGC 58.897 52.381 0.00 0.00 0.00 5.80
4071 11047 3.397618 TGGTGAAGGGAAAGAAGGATTGA 59.602 43.478 0.00 0.00 0.00 2.57
4085 11061 1.654220 CAGGCGTTTGTGGTGAAGG 59.346 57.895 0.00 0.00 0.00 3.46
4105 11081 2.835705 GCTACGGCGCTCTAGCTGA 61.836 63.158 22.12 0.00 45.94 4.26
4174 11164 2.275380 ACCCCATTGCAAAGGCGAC 61.275 57.895 15.33 0.00 45.35 5.19
4192 11182 2.979058 ATGCAACACATGATGGCCA 58.021 47.368 8.56 8.56 37.70 5.36
4219 11217 2.345991 GCAGTCCCGGTAAGTGCA 59.654 61.111 22.47 0.00 41.68 4.57
4226 11224 3.637273 GGTCCTTGCAGTCCCGGT 61.637 66.667 0.00 0.00 0.00 5.28
4263 11262 0.462581 CGTGCCTGCTCATACATGGT 60.463 55.000 0.00 0.00 0.00 3.55
4269 11268 0.321564 ACTTTGCGTGCCTGCTCATA 60.322 50.000 0.00 0.00 35.36 2.15
4270 11269 1.601759 ACTTTGCGTGCCTGCTCAT 60.602 52.632 0.00 0.00 35.36 2.90
4346 11356 0.888619 TGTAGCAGACTTCCCTGTCG 59.111 55.000 0.00 0.00 41.47 4.35
4382 11396 1.207339 CGTGATGCAGCTTCGCAAA 59.793 52.632 18.93 0.00 46.87 3.68
4383 11397 1.629345 CTCGTGATGCAGCTTCGCAA 61.629 55.000 18.93 2.89 46.87 4.85
4387 11401 1.300971 TTGCCTCGTGATGCAGCTTC 61.301 55.000 2.53 1.18 38.95 3.86
4423 11462 1.081509 GTCGAAGCATTTTGGCGCA 60.082 52.632 10.83 0.00 39.27 6.09
4465 11506 2.673341 TCTCGCAGCCGACACTCT 60.673 61.111 0.00 0.00 38.82 3.24
4466 11507 2.202544 CTCTCGCAGCCGACACTC 60.203 66.667 0.00 0.00 38.82 3.51
4469 11510 4.103103 CGACTCTCGCAGCCGACA 62.103 66.667 0.00 0.00 38.82 4.35
4562 11605 1.863662 GACGCTCGACTGGTTCCAGA 61.864 60.000 23.45 2.86 37.49 3.86
4585 11628 2.049433 CTCCGTCTCGCCGTTGTT 60.049 61.111 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.