Multiple sequence alignment - TraesCS3D01G182200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G182200 chr3D 100.000 8138 0 0 1 8138 165867514 165859377 0.000000e+00 15029
1 TraesCS3D01G182200 chr3D 96.739 92 3 0 5539 5630 84113325 84113416 3.930000e-33 154
2 TraesCS3D01G182200 chr3D 95.000 100 1 3 5543 5640 112712758 112712661 3.930000e-33 154
3 TraesCS3D01G182200 chr3D 88.889 126 6 8 5525 5646 165861869 165861990 1.830000e-31 148
4 TraesCS3D01G182200 chr3D 93.976 83 5 0 3919 4001 516880548 516880466 8.570000e-25 126
5 TraesCS3D01G182200 chr3A 95.845 4164 92 23 334 4448 203997639 203993508 0.000000e+00 6656
6 TraesCS3D01G182200 chr3A 95.153 2579 52 19 5625 8138 203986255 203983685 0.000000e+00 4002
7 TraesCS3D01G182200 chr3A 95.747 917 35 4 4447 5361 203993393 203992479 0.000000e+00 1474
8 TraesCS3D01G182200 chr3A 86.269 335 45 1 1 334 204150474 204150140 6.000000e-96 363
9 TraesCS3D01G182200 chr3A 96.410 195 1 2 5353 5544 203986447 203986256 4.740000e-82 316
10 TraesCS3D01G182200 chr3A 92.135 89 7 0 3917 4005 646737342 646737254 8.570000e-25 126
11 TraesCS3D01G182200 chr3B 96.345 3611 80 28 2025 5626 241682402 241678835 0.000000e+00 5890
12 TraesCS3D01G182200 chr3B 94.829 2398 45 16 5571 7925 241678836 241676475 0.000000e+00 3668
13 TraesCS3D01G182200 chr3B 93.907 1674 28 18 334 1987 241684023 241682404 0.000000e+00 2459
14 TraesCS3D01G182200 chr3B 88.182 220 15 9 7930 8138 241670992 241670773 1.360000e-62 252
15 TraesCS3D01G182200 chr3B 95.294 85 4 0 3917 4001 126580149 126580065 1.420000e-27 135
16 TraesCS3D01G182200 chr3B 94.118 85 5 0 3917 4001 680423298 680423382 6.630000e-26 130
17 TraesCS3D01G182200 chr7D 94.000 100 6 0 5537 5636 289566443 289566344 1.410000e-32 152
18 TraesCS3D01G182200 chr6D 91.589 107 7 2 5531 5636 146072811 146072916 6.580000e-31 147
19 TraesCS3D01G182200 chr5A 90.909 110 8 2 5520 5627 390156962 390157071 6.580000e-31 147
20 TraesCS3D01G182200 chr1D 90.741 108 9 1 5520 5627 440050464 440050358 8.510000e-30 143
21 TraesCS3D01G182200 chr1B 96.386 83 3 0 3917 3999 120657843 120657925 3.960000e-28 137
22 TraesCS3D01G182200 chr2A 94.186 86 4 1 3917 4001 593655994 593655909 6.630000e-26 130
23 TraesCS3D01G182200 chr2D 93.023 86 6 0 3917 4002 299891019 299891104 8.570000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G182200 chr3D 165859377 165867514 8137 True 15029.000000 15029 100.0000 1 8138 1 chr3D.!!$R2 8137
1 TraesCS3D01G182200 chr3A 203992479 203997639 5160 True 4065.000000 6656 95.7960 334 5361 2 chr3A.!!$R4 5027
2 TraesCS3D01G182200 chr3A 203983685 203986447 2762 True 2159.000000 4002 95.7815 5353 8138 2 chr3A.!!$R3 2785
3 TraesCS3D01G182200 chr3B 241676475 241684023 7548 True 4005.666667 5890 95.0270 334 7925 3 chr3B.!!$R3 7591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.108520 GCCCGTTGACTGGTCGAATA 60.109 55.000 0.00 0.0 0.00 1.75 F
143 144 0.174845 TTGACTGGTCGAATAGCCGG 59.825 55.000 0.00 0.0 37.18 6.13 F
1758 1794 0.173481 TGATTCGCTTCTCCACTCCG 59.827 55.000 0.00 0.0 0.00 4.63 F
2767 2829 2.961062 AGCATCCTGCCCATTTTATGTC 59.039 45.455 0.00 0.0 46.52 3.06 F
4241 4303 1.408822 GGGCTAGGTGGACCTTCAATG 60.409 57.143 3.03 0.0 46.09 2.82 F
4901 5080 3.149196 GAGTCTCACCTGGCATTTTTCA 58.851 45.455 0.00 0.0 0.00 2.69 F
6514 6781 0.477795 AAAACTGTAGGGGAGGCCCT 60.478 55.000 0.00 0.0 44.66 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1547 1.208358 CGCTGTGGATTGCAGTGTG 59.792 57.895 0.00 0.0 39.02 3.82 R
1929 1985 3.064207 GTTCATGCGACTACCAAAGACA 58.936 45.455 0.00 0.0 0.00 3.41 R
3455 3517 3.660501 TCTATGATCGCATACACCACC 57.339 47.619 0.00 0.0 35.94 4.61 R
4366 4428 1.160137 GAACATGCAACGCCTCTCTT 58.840 50.000 0.00 0.0 0.00 2.85 R
5106 5285 4.394729 TGGTTGATCTGGGTCTAAACAAC 58.605 43.478 0.00 0.0 36.47 3.32 R
6873 7140 1.457346 GCATGTCAGACAGGGGAAAG 58.543 55.000 16.72 0.0 29.37 2.62 R
8037 8318 0.888619 ATCAGAGAAGACGCCAACGA 59.111 50.000 0.00 0.0 43.93 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.288992 ATCATAGGGTCGGGGCCA 59.711 61.111 4.39 0.00 0.00 5.36
18 19 1.151810 ATCATAGGGTCGGGGCCAT 60.152 57.895 4.39 0.00 0.00 4.40
19 20 1.201429 ATCATAGGGTCGGGGCCATC 61.201 60.000 4.39 0.00 0.00 3.51
20 21 2.923035 ATAGGGTCGGGGCCATCG 60.923 66.667 4.39 8.42 0.00 3.84
21 22 3.768833 ATAGGGTCGGGGCCATCGT 62.769 63.158 15.68 0.00 0.00 3.73
25 26 4.446413 GTCGGGGCCATCGTCGTT 62.446 66.667 15.68 0.00 0.00 3.85
26 27 4.444838 TCGGGGCCATCGTCGTTG 62.445 66.667 15.68 0.00 0.00 4.10
27 28 4.752879 CGGGGCCATCGTCGTTGT 62.753 66.667 4.39 0.00 0.00 3.32
28 29 2.818274 GGGGCCATCGTCGTTGTC 60.818 66.667 4.39 0.00 0.00 3.18
29 30 3.186047 GGGCCATCGTCGTTGTCG 61.186 66.667 4.39 0.00 38.55 4.35
30 31 3.849953 GGCCATCGTCGTTGTCGC 61.850 66.667 0.00 0.27 36.96 5.19
31 32 2.809601 GCCATCGTCGTTGTCGCT 60.810 61.111 2.82 0.00 36.96 4.93
32 33 3.071459 GCCATCGTCGTTGTCGCTG 62.071 63.158 2.82 0.00 36.96 5.18
33 34 1.733041 CCATCGTCGTTGTCGCTGT 60.733 57.895 2.82 0.00 36.96 4.40
34 35 1.674611 CCATCGTCGTTGTCGCTGTC 61.675 60.000 2.82 0.00 36.96 3.51
35 36 1.796355 ATCGTCGTTGTCGCTGTCG 60.796 57.895 0.00 0.00 36.96 4.35
36 37 2.453773 ATCGTCGTTGTCGCTGTCGT 62.454 55.000 0.00 0.00 36.96 4.34
37 38 2.694615 CGTCGTTGTCGCTGTCGTC 61.695 63.158 0.00 0.00 36.96 4.20
38 39 1.656263 GTCGTTGTCGCTGTCGTCA 60.656 57.895 0.00 0.00 36.96 4.35
39 40 1.656263 TCGTTGTCGCTGTCGTCAC 60.656 57.895 0.00 0.00 33.84 3.67
40 41 1.657487 CGTTGTCGCTGTCGTCACT 60.657 57.895 0.00 0.00 33.84 3.41
41 42 1.846648 GTTGTCGCTGTCGTCACTG 59.153 57.895 0.00 0.00 33.84 3.66
42 43 0.870307 GTTGTCGCTGTCGTCACTGT 60.870 55.000 0.00 0.00 33.84 3.55
43 44 0.594028 TTGTCGCTGTCGTCACTGTC 60.594 55.000 0.00 0.00 33.84 3.51
44 45 2.075489 GTCGCTGTCGTCACTGTCG 61.075 63.158 0.00 0.00 36.96 4.35
45 46 2.801162 CGCTGTCGTCACTGTCGG 60.801 66.667 0.00 0.00 0.00 4.79
46 47 3.106407 GCTGTCGTCACTGTCGGC 61.106 66.667 0.00 0.00 0.00 5.54
47 48 2.335011 CTGTCGTCACTGTCGGCA 59.665 61.111 3.05 3.05 40.54 5.69
48 49 1.080501 CTGTCGTCACTGTCGGCAT 60.081 57.895 3.48 0.00 41.85 4.40
49 50 1.073216 CTGTCGTCACTGTCGGCATC 61.073 60.000 3.48 0.00 41.85 3.91
50 51 1.080772 GTCGTCACTGTCGGCATCA 60.081 57.895 0.00 0.00 32.96 3.07
51 52 0.458543 GTCGTCACTGTCGGCATCAT 60.459 55.000 0.00 0.00 32.96 2.45
52 53 0.246360 TCGTCACTGTCGGCATCATT 59.754 50.000 0.00 0.00 0.00 2.57
53 54 1.078709 CGTCACTGTCGGCATCATTT 58.921 50.000 0.00 0.00 0.00 2.32
54 55 1.061131 CGTCACTGTCGGCATCATTTC 59.939 52.381 0.00 0.00 0.00 2.17
55 56 1.398390 GTCACTGTCGGCATCATTTCC 59.602 52.381 0.00 0.00 0.00 3.13
56 57 1.003003 TCACTGTCGGCATCATTTCCA 59.997 47.619 0.00 0.00 0.00 3.53
57 58 1.131126 CACTGTCGGCATCATTTCCAC 59.869 52.381 0.00 0.00 0.00 4.02
58 59 0.734889 CTGTCGGCATCATTTCCACC 59.265 55.000 0.00 0.00 0.00 4.61
59 60 1.024046 TGTCGGCATCATTTCCACCG 61.024 55.000 0.00 0.00 45.15 4.94
60 61 2.112198 TCGGCATCATTTCCACCGC 61.112 57.895 0.00 0.00 43.50 5.68
61 62 2.807622 GGCATCATTTCCACCGCC 59.192 61.111 0.00 0.00 0.00 6.13
62 63 2.051518 GGCATCATTTCCACCGCCA 61.052 57.895 0.00 0.00 39.38 5.69
63 64 1.394266 GGCATCATTTCCACCGCCAT 61.394 55.000 0.00 0.00 39.38 4.40
64 65 0.461135 GCATCATTTCCACCGCCATT 59.539 50.000 0.00 0.00 0.00 3.16
65 66 1.803625 GCATCATTTCCACCGCCATTG 60.804 52.381 0.00 0.00 0.00 2.82
66 67 1.477700 CATCATTTCCACCGCCATTGT 59.522 47.619 0.00 0.00 0.00 2.71
67 68 1.626686 TCATTTCCACCGCCATTGTT 58.373 45.000 0.00 0.00 0.00 2.83
68 69 1.271934 TCATTTCCACCGCCATTGTTG 59.728 47.619 0.00 0.00 0.00 3.33
69 70 1.000731 CATTTCCACCGCCATTGTTGT 59.999 47.619 0.00 0.00 0.00 3.32
70 71 1.115467 TTTCCACCGCCATTGTTGTT 58.885 45.000 0.00 0.00 0.00 2.83
71 72 0.387202 TTCCACCGCCATTGTTGTTG 59.613 50.000 0.00 0.00 0.00 3.33
72 73 1.664333 CCACCGCCATTGTTGTTGC 60.664 57.895 0.00 0.00 0.00 4.17
73 74 1.664333 CACCGCCATTGTTGTTGCC 60.664 57.895 0.00 0.00 0.00 4.52
74 75 1.832167 ACCGCCATTGTTGTTGCCT 60.832 52.632 0.00 0.00 0.00 4.75
75 76 1.367102 CCGCCATTGTTGTTGCCTT 59.633 52.632 0.00 0.00 0.00 4.35
76 77 0.667184 CCGCCATTGTTGTTGCCTTC 60.667 55.000 0.00 0.00 0.00 3.46
77 78 1.003262 CGCCATTGTTGTTGCCTTCG 61.003 55.000 0.00 0.00 0.00 3.79
78 79 1.284297 GCCATTGTTGTTGCCTTCGC 61.284 55.000 0.00 0.00 0.00 4.70
79 80 0.667184 CCATTGTTGTTGCCTTCGCC 60.667 55.000 0.00 0.00 0.00 5.54
80 81 1.003262 CATTGTTGTTGCCTTCGCCG 61.003 55.000 0.00 0.00 0.00 6.46
81 82 1.452145 ATTGTTGTTGCCTTCGCCGT 61.452 50.000 0.00 0.00 0.00 5.68
82 83 2.054140 TTGTTGTTGCCTTCGCCGTC 62.054 55.000 0.00 0.00 0.00 4.79
83 84 2.203084 TTGTTGCCTTCGCCGTCA 60.203 55.556 0.00 0.00 0.00 4.35
84 85 2.250939 TTGTTGCCTTCGCCGTCAG 61.251 57.895 0.00 0.00 0.00 3.51
85 86 2.357034 GTTGCCTTCGCCGTCAGA 60.357 61.111 0.00 0.00 0.00 3.27
86 87 2.048222 TTGCCTTCGCCGTCAGAG 60.048 61.111 0.00 0.00 0.00 3.35
87 88 2.867855 TTGCCTTCGCCGTCAGAGT 61.868 57.895 0.00 0.00 0.00 3.24
88 89 2.507324 GCCTTCGCCGTCAGAGTC 60.507 66.667 0.00 0.00 0.00 3.36
89 90 2.202492 CCTTCGCCGTCAGAGTCG 60.202 66.667 0.00 0.00 0.00 4.18
90 91 2.876645 CTTCGCCGTCAGAGTCGC 60.877 66.667 0.00 0.00 0.00 5.19
91 92 3.329688 CTTCGCCGTCAGAGTCGCT 62.330 63.158 0.00 0.00 0.00 4.93
92 93 1.978712 CTTCGCCGTCAGAGTCGCTA 61.979 60.000 0.00 0.00 0.00 4.26
93 94 1.978712 TTCGCCGTCAGAGTCGCTAG 61.979 60.000 0.00 0.00 0.00 3.42
94 95 2.461945 CGCCGTCAGAGTCGCTAGA 61.462 63.158 0.00 0.00 0.00 2.43
105 106 2.826979 GTCGCTAGACAGAACGATGA 57.173 50.000 0.00 0.00 46.32 2.92
106 107 2.442424 GTCGCTAGACAGAACGATGAC 58.558 52.381 0.00 0.00 46.32 3.06
107 108 1.062148 TCGCTAGACAGAACGATGACG 59.938 52.381 0.00 0.00 45.75 4.35
135 136 4.351938 CGCCCGTTGACTGGTCGA 62.352 66.667 0.00 0.00 0.00 4.20
136 137 2.029964 GCCCGTTGACTGGTCGAA 59.970 61.111 0.00 0.00 0.00 3.71
137 138 1.375523 GCCCGTTGACTGGTCGAAT 60.376 57.895 0.00 0.00 0.00 3.34
138 139 0.108520 GCCCGTTGACTGGTCGAATA 60.109 55.000 0.00 0.00 0.00 1.75
139 140 1.922570 CCCGTTGACTGGTCGAATAG 58.077 55.000 0.00 0.00 0.00 1.73
140 141 1.278238 CCGTTGACTGGTCGAATAGC 58.722 55.000 0.00 0.00 0.00 2.97
141 142 1.278238 CGTTGACTGGTCGAATAGCC 58.722 55.000 0.00 0.00 0.00 3.93
142 143 1.278238 GTTGACTGGTCGAATAGCCG 58.722 55.000 0.00 0.00 0.00 5.52
143 144 0.174845 TTGACTGGTCGAATAGCCGG 59.825 55.000 0.00 0.00 37.18 6.13
144 145 0.968901 TGACTGGTCGAATAGCCGGT 60.969 55.000 1.90 4.02 46.20 5.28
145 146 0.527817 GACTGGTCGAATAGCCGGTG 60.528 60.000 8.88 0.00 43.80 4.94
146 147 1.883084 CTGGTCGAATAGCCGGTGC 60.883 63.158 1.90 0.00 37.95 5.01
159 160 3.138798 GGTGCTCCGCCTCGACTA 61.139 66.667 0.00 0.00 0.00 2.59
160 161 2.409651 GTGCTCCGCCTCGACTAG 59.590 66.667 0.00 0.00 0.00 2.57
161 162 3.518998 TGCTCCGCCTCGACTAGC 61.519 66.667 0.00 0.00 0.00 3.42
162 163 3.213402 GCTCCGCCTCGACTAGCT 61.213 66.667 0.00 0.00 0.00 3.32
163 164 3.027292 CTCCGCCTCGACTAGCTC 58.973 66.667 0.00 0.00 0.00 4.09
164 165 2.516460 TCCGCCTCGACTAGCTCC 60.516 66.667 0.00 0.00 0.00 4.70
165 166 3.955101 CCGCCTCGACTAGCTCCG 61.955 72.222 0.00 0.00 0.00 4.63
166 167 3.955101 CGCCTCGACTAGCTCCGG 61.955 72.222 0.00 0.00 0.00 5.14
167 168 3.597728 GCCTCGACTAGCTCCGGG 61.598 72.222 0.00 0.00 0.00 5.73
168 169 2.124236 CCTCGACTAGCTCCGGGT 60.124 66.667 0.00 0.00 0.00 5.28
169 170 1.147824 CCTCGACTAGCTCCGGGTA 59.852 63.158 0.00 0.00 0.00 3.69
170 171 0.885596 CCTCGACTAGCTCCGGGTAG 60.886 65.000 0.00 3.09 45.78 3.18
171 172 1.508808 CTCGACTAGCTCCGGGTAGC 61.509 65.000 7.05 7.05 44.63 3.58
196 197 3.403936 GGAGCTCCGCCATGTAATT 57.596 52.632 19.06 0.00 0.00 1.40
197 198 1.230324 GGAGCTCCGCCATGTAATTC 58.770 55.000 19.06 0.00 0.00 2.17
198 199 1.202698 GGAGCTCCGCCATGTAATTCT 60.203 52.381 19.06 0.00 0.00 2.40
199 200 2.139118 GAGCTCCGCCATGTAATTCTC 58.861 52.381 0.87 0.00 0.00 2.87
200 201 1.486310 AGCTCCGCCATGTAATTCTCA 59.514 47.619 0.00 0.00 0.00 3.27
201 202 2.105477 AGCTCCGCCATGTAATTCTCAT 59.895 45.455 0.00 0.00 0.00 2.90
202 203 2.880890 GCTCCGCCATGTAATTCTCATT 59.119 45.455 0.00 0.00 0.00 2.57
203 204 3.316308 GCTCCGCCATGTAATTCTCATTT 59.684 43.478 0.00 0.00 0.00 2.32
204 205 4.790766 GCTCCGCCATGTAATTCTCATTTG 60.791 45.833 0.00 0.00 0.00 2.32
205 206 3.066621 TCCGCCATGTAATTCTCATTTGC 59.933 43.478 0.00 0.00 0.00 3.68
206 207 3.067180 CCGCCATGTAATTCTCATTTGCT 59.933 43.478 0.00 0.00 0.00 3.91
207 208 4.440525 CCGCCATGTAATTCTCATTTGCTT 60.441 41.667 0.00 0.00 0.00 3.91
208 209 4.501559 CGCCATGTAATTCTCATTTGCTTG 59.498 41.667 0.00 0.00 0.00 4.01
209 210 5.653507 GCCATGTAATTCTCATTTGCTTGA 58.346 37.500 0.00 0.00 0.00 3.02
210 211 6.278363 GCCATGTAATTCTCATTTGCTTGAT 58.722 36.000 0.00 0.00 0.00 2.57
211 212 6.420008 GCCATGTAATTCTCATTTGCTTGATC 59.580 38.462 0.00 0.00 0.00 2.92
212 213 7.683704 GCCATGTAATTCTCATTTGCTTGATCT 60.684 37.037 0.00 0.00 0.00 2.75
213 214 7.648112 CCATGTAATTCTCATTTGCTTGATCTG 59.352 37.037 0.00 0.00 0.00 2.90
214 215 6.558009 TGTAATTCTCATTTGCTTGATCTGC 58.442 36.000 0.00 0.00 0.00 4.26
215 216 5.916661 AATTCTCATTTGCTTGATCTGCT 57.083 34.783 11.38 0.00 0.00 4.24
216 217 5.916661 ATTCTCATTTGCTTGATCTGCTT 57.083 34.783 11.38 0.00 0.00 3.91
217 218 4.959596 TCTCATTTGCTTGATCTGCTTC 57.040 40.909 11.38 0.00 0.00 3.86
218 219 4.329392 TCTCATTTGCTTGATCTGCTTCA 58.671 39.130 11.38 0.00 0.00 3.02
219 220 4.763279 TCTCATTTGCTTGATCTGCTTCAA 59.237 37.500 11.38 0.00 34.55 2.69
220 221 5.417894 TCTCATTTGCTTGATCTGCTTCAAT 59.582 36.000 11.38 5.83 35.20 2.57
221 222 5.407502 TCATTTGCTTGATCTGCTTCAATG 58.592 37.500 11.38 14.09 35.20 2.82
222 223 2.933495 TGCTTGATCTGCTTCAATGC 57.067 45.000 11.38 0.00 35.20 3.56
223 224 1.131693 TGCTTGATCTGCTTCAATGCG 59.868 47.619 11.38 0.00 35.20 4.73
224 225 1.823828 CTTGATCTGCTTCAATGCGC 58.176 50.000 0.00 0.00 35.20 6.09
225 226 1.400846 CTTGATCTGCTTCAATGCGCT 59.599 47.619 9.73 0.00 35.20 5.92
226 227 1.456296 TGATCTGCTTCAATGCGCTT 58.544 45.000 9.73 0.00 35.36 4.68
227 228 1.131693 TGATCTGCTTCAATGCGCTTG 59.868 47.619 9.73 11.02 36.09 4.01
228 229 1.399440 GATCTGCTTCAATGCGCTTGA 59.601 47.619 9.73 13.31 42.15 3.02
229 230 0.800631 TCTGCTTCAATGCGCTTGAG 59.199 50.000 9.73 10.70 44.48 3.02
230 231 0.179171 CTGCTTCAATGCGCTTGAGG 60.179 55.000 19.81 19.81 44.48 3.86
231 232 1.138247 GCTTCAATGCGCTTGAGGG 59.862 57.895 22.96 18.28 44.48 4.30
239 240 4.479993 CGCTTGAGGGCCTCCAGG 62.480 72.222 29.80 20.54 38.53 4.45
240 241 3.334054 GCTTGAGGGCCTCCAGGT 61.334 66.667 29.80 0.00 37.57 4.00
241 242 2.911926 GCTTGAGGGCCTCCAGGTT 61.912 63.158 29.80 0.00 37.57 3.50
242 243 1.301293 CTTGAGGGCCTCCAGGTTC 59.699 63.158 30.03 5.35 37.57 3.62
243 244 1.151810 TTGAGGGCCTCCAGGTTCT 60.152 57.895 30.03 0.00 37.57 3.01
244 245 1.201429 TTGAGGGCCTCCAGGTTCTC 61.201 60.000 30.03 3.75 37.10 2.87
245 246 2.285743 AGGGCCTCCAGGTTCTCC 60.286 66.667 0.00 0.00 37.57 3.71
246 247 3.412408 GGGCCTCCAGGTTCTCCC 61.412 72.222 0.84 0.00 37.57 4.30
247 248 2.610859 GGCCTCCAGGTTCTCCCA 60.611 66.667 0.00 0.00 37.57 4.37
248 249 2.671682 GCCTCCAGGTTCTCCCAC 59.328 66.667 0.00 0.00 37.57 4.61
249 250 2.972819 GCCTCCAGGTTCTCCCACC 61.973 68.421 0.00 0.00 37.57 4.61
251 252 1.268283 CCTCCAGGTTCTCCCACCTC 61.268 65.000 0.00 0.00 44.63 3.85
252 253 0.252467 CTCCAGGTTCTCCCACCTCT 60.252 60.000 0.00 0.00 44.63 3.69
253 254 0.252284 TCCAGGTTCTCCCACCTCTC 60.252 60.000 0.00 0.00 44.63 3.20
254 255 1.608717 CCAGGTTCTCCCACCTCTCG 61.609 65.000 0.00 0.00 44.63 4.04
255 256 1.985116 AGGTTCTCCCACCTCTCGC 60.985 63.158 0.00 0.00 44.63 5.03
256 257 2.182030 GTTCTCCCACCTCTCGCG 59.818 66.667 0.00 0.00 0.00 5.87
257 258 2.282958 TTCTCCCACCTCTCGCGT 60.283 61.111 5.77 0.00 0.00 6.01
258 259 2.636412 TTCTCCCACCTCTCGCGTG 61.636 63.158 5.77 3.13 0.00 5.34
259 260 3.062466 CTCCCACCTCTCGCGTGA 61.062 66.667 10.80 10.80 32.77 4.35
260 261 2.599281 TCCCACCTCTCGCGTGAA 60.599 61.111 12.41 0.00 32.77 3.18
261 262 2.125912 CCCACCTCTCGCGTGAAG 60.126 66.667 12.41 8.76 32.77 3.02
262 263 2.636412 CCCACCTCTCGCGTGAAGA 61.636 63.158 13.29 4.85 32.77 2.87
263 264 1.153939 CCACCTCTCGCGTGAAGAG 60.154 63.158 13.29 13.98 37.09 2.85
264 265 1.587043 CCACCTCTCGCGTGAAGAGA 61.587 60.000 21.20 9.27 41.91 3.10
265 266 0.455295 CACCTCTCGCGTGAAGAGAC 60.455 60.000 21.20 0.00 39.57 3.36
266 267 1.137825 CCTCTCGCGTGAAGAGACC 59.862 63.158 21.20 0.00 39.57 3.85
267 268 1.587043 CCTCTCGCGTGAAGAGACCA 61.587 60.000 21.20 0.00 39.57 4.02
268 269 0.455295 CTCTCGCGTGAAGAGACCAC 60.455 60.000 16.09 0.00 39.57 4.16
269 270 1.444553 CTCGCGTGAAGAGACCACC 60.445 63.158 5.77 0.00 37.93 4.61
270 271 2.432628 CGCGTGAAGAGACCACCC 60.433 66.667 0.00 0.00 0.00 4.61
271 272 2.432628 GCGTGAAGAGACCACCCG 60.433 66.667 0.00 0.00 0.00 5.28
272 273 2.432628 CGTGAAGAGACCACCCGC 60.433 66.667 0.00 0.00 0.00 6.13
273 274 2.932234 CGTGAAGAGACCACCCGCT 61.932 63.158 0.00 0.00 0.00 5.52
274 275 1.374758 GTGAAGAGACCACCCGCTG 60.375 63.158 0.00 0.00 0.00 5.18
282 283 4.838152 CCACCCGCTGGTCGATGG 62.838 72.222 0.00 0.00 45.57 3.51
283 284 4.838152 CACCCGCTGGTCGATGGG 62.838 72.222 0.00 7.76 45.57 4.00
286 287 4.899239 CCGCTGGTCGATGGGCTC 62.899 72.222 0.00 0.00 41.67 4.70
287 288 3.842923 CGCTGGTCGATGGGCTCT 61.843 66.667 0.00 0.00 41.67 4.09
288 289 2.202987 GCTGGTCGATGGGCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
289 290 2.725312 GCTGGTCGATGGGCTCTGA 61.725 63.158 0.00 0.00 0.00 3.27
290 291 1.142748 CTGGTCGATGGGCTCTGAC 59.857 63.158 0.00 0.00 0.00 3.51
291 292 2.303549 CTGGTCGATGGGCTCTGACC 62.304 65.000 14.11 14.11 42.72 4.02
292 293 2.105128 GTCGATGGGCTCTGACCG 59.895 66.667 0.00 0.00 29.56 4.79
293 294 3.838271 TCGATGGGCTCTGACCGC 61.838 66.667 0.00 0.00 29.56 5.68
295 296 4.899239 GATGGGCTCTGACCGCGG 62.899 72.222 26.86 26.86 29.56 6.46
300 301 4.521062 GCTCTGACCGCGGCATCT 62.521 66.667 28.58 4.99 0.00 2.90
301 302 2.279120 CTCTGACCGCGGCATCTC 60.279 66.667 28.58 16.39 0.00 2.75
302 303 3.781770 CTCTGACCGCGGCATCTCC 62.782 68.421 28.58 8.18 0.00 3.71
303 304 4.899239 CTGACCGCGGCATCTCCC 62.899 72.222 28.58 6.28 0.00 4.30
307 308 4.794648 CCGCGGCATCTCCCCAAA 62.795 66.667 14.67 0.00 0.00 3.28
308 309 2.749839 CGCGGCATCTCCCCAAAA 60.750 61.111 0.00 0.00 0.00 2.44
309 310 2.339556 CGCGGCATCTCCCCAAAAA 61.340 57.895 0.00 0.00 0.00 1.94
327 328 3.323751 AAAAATGTTCTGGCAGCCATC 57.676 42.857 16.64 9.43 30.82 3.51
328 329 0.813184 AAATGTTCTGGCAGCCATCG 59.187 50.000 16.64 4.11 30.82 3.84
329 330 1.033746 AATGTTCTGGCAGCCATCGG 61.034 55.000 16.64 3.24 30.82 4.18
341 342 2.034879 CCATCGGCACTGTGTCACC 61.035 63.158 13.41 3.11 0.00 4.02
360 361 4.276431 TCACCGTAAATGTGTTTTTCTCCC 59.724 41.667 0.00 0.00 35.25 4.30
499 500 4.339814 GTGTGTCAATAAAACCAAGGACCA 59.660 41.667 0.00 0.00 0.00 4.02
500 501 5.010617 GTGTGTCAATAAAACCAAGGACCAT 59.989 40.000 0.00 0.00 0.00 3.55
791 800 5.171516 GCGAAAAAGAAGAAGAAAAAGGACG 59.828 40.000 0.00 0.00 0.00 4.79
818 827 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
819 828 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
820 829 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
821 830 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
822 831 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
823 832 2.363680 AGAGAGAGAGAGAGAGAGAGCG 59.636 54.545 0.00 0.00 0.00 5.03
824 833 1.202580 AGAGAGAGAGAGAGAGAGCGC 60.203 57.143 0.00 0.00 0.00 5.92
825 834 0.530650 AGAGAGAGAGAGAGAGCGCG 60.531 60.000 0.00 0.00 0.00 6.86
826 835 0.529773 GAGAGAGAGAGAGAGCGCGA 60.530 60.000 12.10 0.00 0.00 5.87
827 836 0.530650 AGAGAGAGAGAGAGCGCGAG 60.531 60.000 12.10 0.00 0.00 5.03
865 874 3.328050 AGTGGTAGAAAGGAAACCAGAGG 59.672 47.826 0.00 0.00 43.73 3.69
1010 1019 2.187946 GACACCCATGGAGCCTCG 59.812 66.667 15.22 0.00 0.00 4.63
1401 1437 3.804193 CTCCCTTTTGCGCGCTCC 61.804 66.667 33.29 3.49 0.00 4.70
1483 1519 2.595977 GAGCCAGCTTTACGTTACGTAC 59.404 50.000 17.53 6.51 42.13 3.67
1499 1535 6.034790 CGTTACGTACAAGTATTTGCCATGTA 59.965 38.462 0.00 0.48 37.85 2.29
1758 1794 0.173481 TGATTCGCTTCTCCACTCCG 59.827 55.000 0.00 0.00 0.00 4.63
1837 1879 4.161001 TGGGCTACTAAGTTTACTAGGTGC 59.839 45.833 0.00 0.00 0.00 5.01
1987 2043 6.530887 TGTCAAATGCATGGAAAAACGATATG 59.469 34.615 0.00 0.00 0.00 1.78
2015 2071 7.047891 TGTATAACCATCAATCACAGAGGTTC 58.952 38.462 0.00 0.00 39.77 3.62
2153 2209 7.041916 TGGATTAAATGCTTTTTGACTTGCTTG 60.042 33.333 2.59 0.00 0.00 4.01
2171 2227 6.100404 TGCTTGATTTGCCAAAGATACTTT 57.900 33.333 0.00 0.00 0.00 2.66
2330 2386 4.301072 GCATGGGCCTAGGATATTGTTA 57.699 45.455 14.75 0.00 0.00 2.41
2457 2517 7.320443 TGCAATAGATGACAAATGGAGTAAC 57.680 36.000 0.00 0.00 0.00 2.50
2474 2535 7.235079 TGGAGTAACCACTGATTCCATTTTTA 58.765 34.615 0.00 0.00 44.64 1.52
2767 2829 2.961062 AGCATCCTGCCCATTTTATGTC 59.039 45.455 0.00 0.00 46.52 3.06
3409 3471 6.163476 TCACATGTCATACCAACTGACTTAC 58.837 40.000 0.00 0.00 42.78 2.34
3927 3989 3.887621 TGTATGTTGTACTCCCTCTGC 57.112 47.619 0.00 0.00 0.00 4.26
3974 4036 5.680619 ACACTGTCATGGACTCTAAAAACA 58.319 37.500 0.00 0.00 33.15 2.83
4060 4122 3.841255 ACCTGGAAGCTAGCTAGAACTTT 59.159 43.478 25.15 11.72 0.00 2.66
4241 4303 1.408822 GGGCTAGGTGGACCTTCAATG 60.409 57.143 3.03 0.00 46.09 2.82
4279 4341 9.288576 TCTAGTCATGAATTGAGAACATTTGTT 57.711 29.630 0.00 0.00 41.64 2.83
4295 4357 4.829064 TTTGTTGTCCATAAGCAGTGAC 57.171 40.909 0.00 0.00 0.00 3.67
4308 4370 7.173735 CCATAAGCAGTGACTTGATTGCATATA 59.826 37.037 9.27 0.00 38.97 0.86
4352 4414 4.378459 GGAGACAAATGACCTTTTAGTGCG 60.378 45.833 0.00 0.00 0.00 5.34
4366 4428 8.096414 ACCTTTTAGTGCGAAGTAAATAGGTTA 58.904 33.333 20.71 2.66 32.09 2.85
4431 4493 4.424711 TCATGCCACCGCCCCTTC 62.425 66.667 0.00 0.00 0.00 3.46
4460 4638 6.601613 TGCTTAAGACATATTTGGTTACCTGG 59.398 38.462 6.67 0.00 0.00 4.45
4504 4682 6.484308 ACTTGCTTAGCTTAAAGGTTCGTAAA 59.516 34.615 5.60 0.00 0.00 2.01
4505 4683 7.174426 ACTTGCTTAGCTTAAAGGTTCGTAAAT 59.826 33.333 5.60 0.00 0.00 1.40
4620 4798 8.500837 TGTGAAGCTGTTTGTAAAATTTATCG 57.499 30.769 0.00 0.00 0.00 2.92
4647 4825 6.471976 TTGAATGAAACTCTCATGAAGTCG 57.528 37.500 9.89 0.00 44.43 4.18
4649 4827 3.385193 TGAAACTCTCATGAAGTCGCA 57.615 42.857 9.89 8.71 0.00 5.10
4669 4847 5.637810 TCGCAATAGTTCGAAAAATGTCTCT 59.362 36.000 0.00 0.00 0.00 3.10
4751 4929 9.613428 TGTACTTAGAAGAATACATCCCATTTG 57.387 33.333 0.00 0.00 0.00 2.32
4876 5055 3.417101 ACAATTTACTGCCGATCAACCA 58.583 40.909 0.00 0.00 0.00 3.67
4890 5069 4.583871 GATCAACCATTTGAGTCTCACCT 58.416 43.478 0.78 0.00 45.07 4.00
4901 5080 3.149196 GAGTCTCACCTGGCATTTTTCA 58.851 45.455 0.00 0.00 0.00 2.69
5106 5285 2.967599 TCATGTGACCAAGATCCTCG 57.032 50.000 0.00 0.00 0.00 4.63
5171 5350 1.911357 AGCCTCACATTGACCAGATGA 59.089 47.619 0.00 0.00 0.00 2.92
5513 5696 2.951642 CGTCTTGGGTTCATTGCCATAT 59.048 45.455 0.00 0.00 0.00 1.78
5514 5697 4.133820 CGTCTTGGGTTCATTGCCATATA 58.866 43.478 0.00 0.00 0.00 0.86
5515 5698 4.024048 CGTCTTGGGTTCATTGCCATATAC 60.024 45.833 0.00 0.00 0.00 1.47
5585 5768 9.865321 AATATAAGAGCGTTTTTGACACTAGTA 57.135 29.630 0.00 0.00 0.00 1.82
5623 5860 5.019657 TCTTATATTATGGGACGGAGGGT 57.980 43.478 0.00 0.00 0.00 4.34
5648 5885 9.453325 GTGTAGTTCTTTATACTGCAGTATCTC 57.547 37.037 36.39 21.73 41.18 2.75
6119 6386 5.482908 ACTCATTGACTCTCGCAAACTATT 58.517 37.500 0.00 0.00 0.00 1.73
6345 6612 7.520451 AGCGAAAAACTTTAGGTCCTAATTT 57.480 32.000 12.25 9.49 0.00 1.82
6398 6665 6.329986 AGTGTCCCATCTATCATGGAATTGTA 59.670 38.462 1.96 0.00 41.64 2.41
6514 6781 0.477795 AAAACTGTAGGGGAGGCCCT 60.478 55.000 0.00 0.00 44.66 5.19
6541 6808 5.928976 TCAGTGTGGTATCCTGGATTATTG 58.071 41.667 15.55 4.90 0.00 1.90
6544 6811 5.191722 AGTGTGGTATCCTGGATTATTGTGT 59.808 40.000 15.55 0.00 0.00 3.72
6873 7140 2.911484 CTTGGCTACAGTTCATCTCCC 58.089 52.381 0.00 0.00 0.00 4.30
6889 7156 0.104672 TCCCTTTCCCCTGTCTGACA 60.105 55.000 10.50 10.50 0.00 3.58
7018 7285 0.824109 CCAAGTAGGATCGCCAGTGA 59.176 55.000 0.00 0.00 41.22 3.41
7226 7493 7.675619 AGGTAGATTTGAACCTTCCATGATTTT 59.324 33.333 0.00 0.00 43.77 1.82
7321 7588 2.618709 GCCCCTCCGATGTGAATAAAAG 59.381 50.000 0.00 0.00 0.00 2.27
7483 7751 5.952347 GGAAGGTTTTTGGATATCAGGTTCT 59.048 40.000 4.83 0.00 0.00 3.01
7571 7839 6.515272 AATCGCCACATGAAGAAATTACTT 57.485 33.333 0.00 0.00 0.00 2.24
7746 8016 8.912658 ACGTTTATATAATGAAGTATCGCTGTG 58.087 33.333 0.00 0.00 0.00 3.66
7792 8062 4.222145 ACCGGTGTCTATTTCTTTGCTAGA 59.778 41.667 6.12 0.00 0.00 2.43
7794 8064 5.063564 CCGGTGTCTATTTCTTTGCTAGAAC 59.936 44.000 0.00 0.00 42.50 3.01
7820 8090 1.454653 GTTACCGCTTCGAACTGACAC 59.545 52.381 0.00 0.00 0.00 3.67
7984 8264 0.394352 GCCCGATGGGTCTTCAACAT 60.394 55.000 3.40 0.00 46.51 2.71
8037 8318 4.266714 CATTACCCCGTGGATAAACAACT 58.733 43.478 0.00 0.00 34.81 3.16
8038 8319 2.484742 ACCCCGTGGATAAACAACTC 57.515 50.000 0.00 0.00 34.81 3.01
8039 8320 1.338389 ACCCCGTGGATAAACAACTCG 60.338 52.381 0.00 0.00 34.81 4.18
8045 8350 1.801771 TGGATAAACAACTCGTTGGCG 59.198 47.619 13.70 0.00 44.45 5.69
8057 8362 1.135373 TCGTTGGCGTCTTCTCTGATC 60.135 52.381 0.00 0.00 39.49 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.151810 ATGGCCCCGACCCTATGAT 60.152 57.895 0.00 0.00 0.00 2.45
2 3 2.750350 GATGGCCCCGACCCTATG 59.250 66.667 0.00 0.00 0.00 2.23
3 4 2.923035 CGATGGCCCCGACCCTAT 60.923 66.667 8.77 0.00 0.00 2.57
4 5 4.468769 ACGATGGCCCCGACCCTA 62.469 66.667 19.59 0.00 0.00 3.53
8 9 4.446413 AACGACGATGGCCCCGAC 62.446 66.667 19.59 13.02 0.00 4.79
9 10 4.444838 CAACGACGATGGCCCCGA 62.445 66.667 19.59 0.00 0.00 5.14
10 11 4.752879 ACAACGACGATGGCCCCG 62.753 66.667 10.02 12.37 0.00 5.73
11 12 2.818274 GACAACGACGATGGCCCC 60.818 66.667 10.02 0.00 0.00 5.80
12 13 3.186047 CGACAACGACGATGGCCC 61.186 66.667 10.02 0.00 42.66 5.80
13 14 3.849953 GCGACAACGACGATGGCC 61.850 66.667 10.02 0.00 42.66 5.36
14 15 2.809601 AGCGACAACGACGATGGC 60.810 61.111 10.02 5.40 42.66 4.40
15 16 3.072598 CAGCGACAACGACGATGG 58.927 61.111 10.02 0.00 42.17 3.51
17 18 1.796355 CGACAGCGACAACGACGAT 60.796 57.895 0.00 0.00 42.66 3.73
18 19 2.426261 CGACAGCGACAACGACGA 60.426 61.111 0.00 0.00 42.66 4.20
19 20 2.694615 GACGACAGCGACAACGACG 61.695 63.158 0.00 0.00 42.66 5.12
20 21 1.656263 TGACGACAGCGACAACGAC 60.656 57.895 0.00 0.00 39.08 4.34
21 22 1.656263 GTGACGACAGCGACAACGA 60.656 57.895 0.00 0.00 43.12 3.85
22 23 1.657487 AGTGACGACAGCGACAACG 60.657 57.895 0.00 0.00 43.12 4.10
23 24 0.870307 ACAGTGACGACAGCGACAAC 60.870 55.000 0.00 0.00 43.12 3.32
24 25 0.594028 GACAGTGACGACAGCGACAA 60.594 55.000 0.00 0.00 43.12 3.18
25 26 1.008881 GACAGTGACGACAGCGACA 60.009 57.895 0.00 0.00 41.64 4.35
26 27 2.075489 CGACAGTGACGACAGCGAC 61.075 63.158 9.44 0.00 41.64 5.19
27 28 2.251371 CGACAGTGACGACAGCGA 59.749 61.111 9.44 0.00 41.64 4.93
28 29 2.801162 CCGACAGTGACGACAGCG 60.801 66.667 16.51 0.00 44.79 5.18
29 30 3.106407 GCCGACAGTGACGACAGC 61.106 66.667 16.51 7.68 0.00 4.40
30 31 1.073216 GATGCCGACAGTGACGACAG 61.073 60.000 16.51 1.19 0.00 3.51
31 32 1.080772 GATGCCGACAGTGACGACA 60.081 57.895 16.51 11.53 0.00 4.35
32 33 0.458543 ATGATGCCGACAGTGACGAC 60.459 55.000 16.51 5.41 0.00 4.34
33 34 0.246360 AATGATGCCGACAGTGACGA 59.754 50.000 16.51 0.00 0.00 4.20
34 35 1.061131 GAAATGATGCCGACAGTGACG 59.939 52.381 8.06 8.06 0.00 4.35
35 36 1.398390 GGAAATGATGCCGACAGTGAC 59.602 52.381 0.00 0.00 0.00 3.67
36 37 1.003003 TGGAAATGATGCCGACAGTGA 59.997 47.619 0.00 0.00 0.00 3.41
37 38 1.131126 GTGGAAATGATGCCGACAGTG 59.869 52.381 0.00 0.00 0.00 3.66
38 39 1.453155 GTGGAAATGATGCCGACAGT 58.547 50.000 0.00 0.00 0.00 3.55
39 40 0.734889 GGTGGAAATGATGCCGACAG 59.265 55.000 0.00 0.00 0.00 3.51
40 41 1.024046 CGGTGGAAATGATGCCGACA 61.024 55.000 0.00 0.00 44.57 4.35
41 42 1.721487 CGGTGGAAATGATGCCGAC 59.279 57.895 0.00 0.00 44.57 4.79
42 43 2.112198 GCGGTGGAAATGATGCCGA 61.112 57.895 5.42 0.00 44.57 5.54
43 44 2.408835 GCGGTGGAAATGATGCCG 59.591 61.111 0.00 0.00 44.60 5.69
44 45 1.394266 ATGGCGGTGGAAATGATGCC 61.394 55.000 0.00 0.00 42.76 4.40
45 46 0.461135 AATGGCGGTGGAAATGATGC 59.539 50.000 0.00 0.00 0.00 3.91
46 47 1.477700 ACAATGGCGGTGGAAATGATG 59.522 47.619 0.00 0.00 0.00 3.07
47 48 1.851304 ACAATGGCGGTGGAAATGAT 58.149 45.000 0.00 0.00 0.00 2.45
48 49 1.271934 CAACAATGGCGGTGGAAATGA 59.728 47.619 0.00 0.00 0.00 2.57
49 50 1.000731 ACAACAATGGCGGTGGAAATG 59.999 47.619 0.00 0.00 0.00 2.32
50 51 1.337118 ACAACAATGGCGGTGGAAAT 58.663 45.000 0.00 0.00 0.00 2.17
51 52 1.115467 AACAACAATGGCGGTGGAAA 58.885 45.000 0.00 0.00 0.00 3.13
52 53 0.387202 CAACAACAATGGCGGTGGAA 59.613 50.000 0.00 0.00 0.00 3.53
53 54 2.037053 CAACAACAATGGCGGTGGA 58.963 52.632 0.00 0.00 0.00 4.02
54 55 1.664333 GCAACAACAATGGCGGTGG 60.664 57.895 0.00 0.00 0.00 4.61
55 56 1.664333 GGCAACAACAATGGCGGTG 60.664 57.895 0.00 0.00 33.46 4.94
56 57 1.398958 AAGGCAACAACAATGGCGGT 61.399 50.000 0.00 0.00 46.95 5.68
57 58 0.667184 GAAGGCAACAACAATGGCGG 60.667 55.000 0.00 0.00 46.95 6.13
58 59 1.003262 CGAAGGCAACAACAATGGCG 61.003 55.000 0.00 0.00 46.95 5.69
59 60 1.284297 GCGAAGGCAACAACAATGGC 61.284 55.000 0.00 0.00 43.17 4.40
60 61 2.813100 GCGAAGGCAACAACAATGG 58.187 52.632 0.00 0.00 39.62 3.16
72 73 2.202492 CGACTCTGACGGCGAAGG 60.202 66.667 16.62 7.49 0.00 3.46
73 74 1.978712 TAGCGACTCTGACGGCGAAG 61.979 60.000 16.62 11.20 0.00 3.79
74 75 1.978712 CTAGCGACTCTGACGGCGAA 61.979 60.000 16.62 0.00 0.00 4.70
75 76 2.435410 TAGCGACTCTGACGGCGA 60.435 61.111 16.62 0.00 0.00 5.54
76 77 2.023461 CTAGCGACTCTGACGGCG 59.977 66.667 4.80 4.80 0.00 6.46
77 78 1.062845 GTCTAGCGACTCTGACGGC 59.937 63.158 0.00 0.00 37.19 5.68
78 79 0.375454 CTGTCTAGCGACTCTGACGG 59.625 60.000 0.00 0.00 40.86 4.79
79 80 1.360820 TCTGTCTAGCGACTCTGACG 58.639 55.000 0.00 0.00 40.86 4.35
80 81 2.474856 CGTTCTGTCTAGCGACTCTGAC 60.475 54.545 0.00 0.00 40.86 3.51
81 82 1.732809 CGTTCTGTCTAGCGACTCTGA 59.267 52.381 0.00 0.00 40.86 3.27
82 83 1.732809 TCGTTCTGTCTAGCGACTCTG 59.267 52.381 0.00 0.00 40.86 3.35
83 84 2.096220 TCGTTCTGTCTAGCGACTCT 57.904 50.000 0.00 0.00 40.86 3.24
84 85 2.352034 TCATCGTTCTGTCTAGCGACTC 59.648 50.000 0.00 0.00 40.86 3.36
85 86 2.096174 GTCATCGTTCTGTCTAGCGACT 59.904 50.000 0.00 0.00 40.86 4.18
86 87 2.442424 GTCATCGTTCTGTCTAGCGAC 58.558 52.381 0.00 0.00 40.64 5.19
87 88 1.062148 CGTCATCGTTCTGTCTAGCGA 59.938 52.381 0.00 0.00 37.76 4.93
88 89 1.457738 CGTCATCGTTCTGTCTAGCG 58.542 55.000 0.00 0.00 0.00 4.26
119 120 0.108520 TATTCGACCAGTCAACGGGC 60.109 55.000 0.00 0.00 34.39 6.13
120 121 1.922570 CTATTCGACCAGTCAACGGG 58.077 55.000 0.00 0.00 37.23 5.28
121 122 1.278238 GCTATTCGACCAGTCAACGG 58.722 55.000 0.00 0.00 0.00 4.44
122 123 1.278238 GGCTATTCGACCAGTCAACG 58.722 55.000 0.00 0.00 0.00 4.10
123 124 1.278238 CGGCTATTCGACCAGTCAAC 58.722 55.000 0.00 0.00 0.00 3.18
124 125 0.174845 CCGGCTATTCGACCAGTCAA 59.825 55.000 0.00 0.00 0.00 3.18
125 126 0.968901 ACCGGCTATTCGACCAGTCA 60.969 55.000 0.00 0.00 0.00 3.41
126 127 0.527817 CACCGGCTATTCGACCAGTC 60.528 60.000 0.00 0.00 0.00 3.51
127 128 1.515954 CACCGGCTATTCGACCAGT 59.484 57.895 0.00 0.00 0.00 4.00
128 129 1.883084 GCACCGGCTATTCGACCAG 60.883 63.158 0.00 0.00 36.96 4.00
129 130 2.185867 GCACCGGCTATTCGACCA 59.814 61.111 0.00 0.00 36.96 4.02
146 147 2.548295 GGAGCTAGTCGAGGCGGAG 61.548 68.421 0.00 0.00 0.00 4.63
147 148 2.516460 GGAGCTAGTCGAGGCGGA 60.516 66.667 0.00 0.00 0.00 5.54
148 149 3.955101 CGGAGCTAGTCGAGGCGG 61.955 72.222 0.00 0.00 0.00 6.13
149 150 3.955101 CCGGAGCTAGTCGAGGCG 61.955 72.222 0.00 0.00 0.00 5.52
150 151 2.955022 TACCCGGAGCTAGTCGAGGC 62.955 65.000 0.73 0.00 0.00 4.70
151 152 0.885596 CTACCCGGAGCTAGTCGAGG 60.886 65.000 0.73 7.16 0.00 4.63
152 153 1.508808 GCTACCCGGAGCTAGTCGAG 61.509 65.000 0.73 0.00 39.50 4.04
153 154 1.525535 GCTACCCGGAGCTAGTCGA 60.526 63.158 0.73 0.00 39.50 4.20
154 155 2.894565 CGCTACCCGGAGCTAGTCG 61.895 68.421 12.83 7.91 40.51 4.18
155 156 3.032339 CGCTACCCGGAGCTAGTC 58.968 66.667 12.83 1.08 40.51 2.59
167 168 4.874977 GAGCTCCGCCACCGCTAC 62.875 72.222 0.87 0.00 33.47 3.58
182 183 4.790766 GCAAATGAGAATTACATGGCGGAG 60.791 45.833 0.00 0.00 0.00 4.63
183 184 3.066621 GCAAATGAGAATTACATGGCGGA 59.933 43.478 0.00 0.00 0.00 5.54
184 185 3.067180 AGCAAATGAGAATTACATGGCGG 59.933 43.478 0.00 0.00 35.52 6.13
185 186 4.297299 AGCAAATGAGAATTACATGGCG 57.703 40.909 0.00 0.00 35.52 5.69
186 187 5.653507 TCAAGCAAATGAGAATTACATGGC 58.346 37.500 0.00 10.91 32.73 4.40
187 188 7.648112 CAGATCAAGCAAATGAGAATTACATGG 59.352 37.037 0.00 0.00 31.76 3.66
188 189 7.167635 GCAGATCAAGCAAATGAGAATTACATG 59.832 37.037 5.41 0.00 31.76 3.21
189 190 7.068348 AGCAGATCAAGCAAATGAGAATTACAT 59.932 33.333 11.97 0.00 31.76 2.29
190 191 6.376299 AGCAGATCAAGCAAATGAGAATTACA 59.624 34.615 11.97 0.00 31.76 2.41
191 192 6.793349 AGCAGATCAAGCAAATGAGAATTAC 58.207 36.000 11.97 0.00 31.76 1.89
192 193 7.121611 TGAAGCAGATCAAGCAAATGAGAATTA 59.878 33.333 11.97 0.00 31.76 1.40
193 194 5.916661 AGCAGATCAAGCAAATGAGAATT 57.083 34.783 11.97 0.00 31.76 2.17
194 195 5.417894 TGAAGCAGATCAAGCAAATGAGAAT 59.582 36.000 11.97 0.00 31.76 2.40
195 196 4.763279 TGAAGCAGATCAAGCAAATGAGAA 59.237 37.500 11.97 0.00 31.76 2.87
196 197 4.329392 TGAAGCAGATCAAGCAAATGAGA 58.671 39.130 11.97 0.00 31.76 3.27
197 198 4.696899 TGAAGCAGATCAAGCAAATGAG 57.303 40.909 11.97 0.00 31.76 2.90
198 199 5.407502 CATTGAAGCAGATCAAGCAAATGA 58.592 37.500 18.04 0.00 42.21 2.57
199 200 4.032900 GCATTGAAGCAGATCAAGCAAATG 59.967 41.667 18.30 18.30 42.21 2.32
200 201 4.181578 GCATTGAAGCAGATCAAGCAAAT 58.818 39.130 11.97 6.48 42.21 2.32
201 202 3.581755 GCATTGAAGCAGATCAAGCAAA 58.418 40.909 11.97 4.73 42.21 3.68
202 203 2.414957 CGCATTGAAGCAGATCAAGCAA 60.415 45.455 11.97 1.84 42.21 3.91
203 204 1.131693 CGCATTGAAGCAGATCAAGCA 59.868 47.619 11.97 0.00 42.21 3.91
204 205 1.823828 CGCATTGAAGCAGATCAAGC 58.176 50.000 0.00 0.00 42.21 4.01
205 206 1.400846 AGCGCATTGAAGCAGATCAAG 59.599 47.619 11.47 0.00 42.21 3.02
206 207 1.456296 AGCGCATTGAAGCAGATCAA 58.544 45.000 11.47 2.66 43.03 2.57
207 208 1.131693 CAAGCGCATTGAAGCAGATCA 59.868 47.619 11.47 0.00 41.83 2.92
208 209 1.399440 TCAAGCGCATTGAAGCAGATC 59.601 47.619 11.47 0.00 45.00 2.75
209 210 1.456296 TCAAGCGCATTGAAGCAGAT 58.544 45.000 11.47 0.00 45.00 2.90
210 211 2.931246 TCAAGCGCATTGAAGCAGA 58.069 47.368 11.47 0.00 45.00 4.26
216 217 2.751436 GGCCCTCAAGCGCATTGA 60.751 61.111 11.47 15.40 45.79 2.57
217 218 2.753043 AGGCCCTCAAGCGCATTG 60.753 61.111 11.47 11.67 40.52 2.82
218 219 2.439156 GAGGCCCTCAAGCGCATT 60.439 61.111 11.47 0.00 0.00 3.56
219 220 4.496336 GGAGGCCCTCAAGCGCAT 62.496 66.667 13.90 0.00 31.08 4.73
222 223 4.479993 CCTGGAGGCCCTCAAGCG 62.480 72.222 13.90 1.09 30.52 4.68
223 224 2.828480 GAACCTGGAGGCCCTCAAGC 62.828 65.000 13.90 0.00 39.32 4.01
224 225 1.204113 AGAACCTGGAGGCCCTCAAG 61.204 60.000 13.90 11.08 39.32 3.02
225 226 1.151810 AGAACCTGGAGGCCCTCAA 60.152 57.895 13.90 0.00 39.32 3.02
226 227 1.613630 GAGAACCTGGAGGCCCTCA 60.614 63.158 13.90 0.00 39.32 3.86
227 228 2.371259 GGAGAACCTGGAGGCCCTC 61.371 68.421 0.73 0.73 39.32 4.30
228 229 2.285743 GGAGAACCTGGAGGCCCT 60.286 66.667 0.00 0.00 39.32 5.19
229 230 3.412408 GGGAGAACCTGGAGGCCC 61.412 72.222 0.00 1.63 39.32 5.80
230 231 2.610859 TGGGAGAACCTGGAGGCC 60.611 66.667 0.00 0.00 41.11 5.19
231 232 2.671682 GTGGGAGAACCTGGAGGC 59.328 66.667 0.00 0.00 41.11 4.70
232 233 3.404773 GGTGGGAGAACCTGGAGG 58.595 66.667 0.00 0.00 41.11 4.30
238 239 2.579738 GCGAGAGGTGGGAGAACC 59.420 66.667 0.00 0.00 40.85 3.62
239 240 2.182030 CGCGAGAGGTGGGAGAAC 59.818 66.667 0.00 0.00 0.00 3.01
240 241 2.282958 ACGCGAGAGGTGGGAGAA 60.283 61.111 15.93 0.00 0.00 2.87
241 242 3.062466 CACGCGAGAGGTGGGAGA 61.062 66.667 15.93 0.00 0.00 3.71
242 243 2.549611 CTTCACGCGAGAGGTGGGAG 62.550 65.000 15.93 0.00 40.27 4.30
243 244 2.599281 TTCACGCGAGAGGTGGGA 60.599 61.111 15.93 0.00 36.60 4.37
244 245 2.125912 CTTCACGCGAGAGGTGGG 60.126 66.667 15.93 0.00 36.09 4.61
245 246 1.153939 CTCTTCACGCGAGAGGTGG 60.154 63.158 15.93 5.09 37.56 4.61
246 247 0.455295 GTCTCTTCACGCGAGAGGTG 60.455 60.000 15.93 12.54 40.78 4.00
247 248 1.587933 GGTCTCTTCACGCGAGAGGT 61.588 60.000 15.93 0.00 40.78 3.85
248 249 1.137825 GGTCTCTTCACGCGAGAGG 59.862 63.158 15.93 12.06 40.78 3.69
249 250 0.455295 GTGGTCTCTTCACGCGAGAG 60.455 60.000 15.93 15.48 41.57 3.20
250 251 1.579932 GTGGTCTCTTCACGCGAGA 59.420 57.895 15.93 7.99 35.29 4.04
251 252 1.444553 GGTGGTCTCTTCACGCGAG 60.445 63.158 15.93 4.59 36.09 5.03
252 253 2.649034 GGTGGTCTCTTCACGCGA 59.351 61.111 15.93 0.00 36.09 5.87
253 254 2.432628 GGGTGGTCTCTTCACGCG 60.433 66.667 3.53 3.53 38.08 6.01
254 255 2.432628 CGGGTGGTCTCTTCACGC 60.433 66.667 0.00 0.00 42.32 5.34
255 256 2.432628 GCGGGTGGTCTCTTCACG 60.433 66.667 0.00 0.00 36.09 4.35
256 257 1.374758 CAGCGGGTGGTCTCTTCAC 60.375 63.158 0.00 0.00 34.61 3.18
257 258 2.583441 CCAGCGGGTGGTCTCTTCA 61.583 63.158 17.92 0.00 42.17 3.02
258 259 2.266055 CCAGCGGGTGGTCTCTTC 59.734 66.667 17.92 0.00 42.17 2.87
269 270 4.899239 GAGCCCATCGACCAGCGG 62.899 72.222 0.00 0.00 41.33 5.52
270 271 3.842923 AGAGCCCATCGACCAGCG 61.843 66.667 0.00 0.00 42.69 5.18
271 272 2.202987 CAGAGCCCATCGACCAGC 60.203 66.667 0.00 0.00 0.00 4.85
272 273 1.142748 GTCAGAGCCCATCGACCAG 59.857 63.158 0.00 0.00 0.00 4.00
273 274 2.359169 GGTCAGAGCCCATCGACCA 61.359 63.158 0.00 0.00 44.33 4.02
274 275 2.501610 GGTCAGAGCCCATCGACC 59.498 66.667 0.00 0.00 41.25 4.79
275 276 2.105128 CGGTCAGAGCCCATCGAC 59.895 66.667 0.00 0.00 33.47 4.20
276 277 3.838271 GCGGTCAGAGCCCATCGA 61.838 66.667 0.00 0.00 0.00 3.59
278 279 4.899239 CCGCGGTCAGAGCCCATC 62.899 72.222 19.50 0.00 0.00 3.51
283 284 4.521062 AGATGCCGCGGTCAGAGC 62.521 66.667 28.70 16.89 0.00 4.09
284 285 2.279120 GAGATGCCGCGGTCAGAG 60.279 66.667 28.70 0.00 0.00 3.35
285 286 3.838271 GGAGATGCCGCGGTCAGA 61.838 66.667 28.70 8.98 0.00 3.27
286 287 4.899239 GGGAGATGCCGCGGTCAG 62.899 72.222 28.70 0.27 37.63 3.51
307 308 2.353011 CGATGGCTGCCAGAACATTTTT 60.353 45.455 27.20 6.42 36.75 1.94
308 309 1.203052 CGATGGCTGCCAGAACATTTT 59.797 47.619 27.20 7.23 36.75 1.82
309 310 0.813184 CGATGGCTGCCAGAACATTT 59.187 50.000 27.20 8.06 36.75 2.32
310 311 1.033746 CCGATGGCTGCCAGAACATT 61.034 55.000 27.20 8.88 36.75 2.71
311 312 1.452651 CCGATGGCTGCCAGAACAT 60.453 57.895 27.20 9.71 36.75 2.71
312 313 2.046023 CCGATGGCTGCCAGAACA 60.046 61.111 27.20 2.30 36.75 3.18
313 314 3.512516 GCCGATGGCTGCCAGAAC 61.513 66.667 27.20 18.20 46.69 3.01
323 324 2.034879 GGTGACACAGTGCCGATGG 61.035 63.158 8.08 0.00 0.00 3.51
324 325 2.382746 CGGTGACACAGTGCCGATG 61.383 63.158 11.54 0.00 46.33 3.84
325 326 1.529152 TACGGTGACACAGTGCCGAT 61.529 55.000 20.96 10.27 46.33 4.18
326 327 1.736365 TTACGGTGACACAGTGCCGA 61.736 55.000 20.96 0.00 46.33 5.54
328 329 1.196808 CATTTACGGTGACACAGTGCC 59.803 52.381 19.90 0.00 0.00 5.01
329 330 1.871039 ACATTTACGGTGACACAGTGC 59.129 47.619 19.90 0.00 0.00 4.40
330 331 2.869801 ACACATTTACGGTGACACAGTG 59.130 45.455 19.90 11.67 39.53 3.66
331 332 3.188159 ACACATTTACGGTGACACAGT 57.812 42.857 15.70 15.70 39.53 3.55
332 333 4.545823 AAACACATTTACGGTGACACAG 57.454 40.909 8.08 6.00 39.53 3.66
341 342 7.061789 GCTATTTGGGAGAAAAACACATTTACG 59.938 37.037 0.00 0.00 0.00 3.18
360 361 5.845985 TCTCAAGACTCGTTTGCTATTTG 57.154 39.130 0.00 0.00 0.00 2.32
481 482 5.362430 GCCATATGGTCCTTGGTTTTATTGA 59.638 40.000 22.79 0.00 37.57 2.57
499 500 3.751893 GCCCCAGTTATGTTGAGCCATAT 60.752 47.826 0.00 0.00 0.00 1.78
500 501 2.422803 GCCCCAGTTATGTTGAGCCATA 60.423 50.000 0.00 0.00 0.00 2.74
678 681 0.317160 TGGTGTTTGTCTCTCGCGAT 59.683 50.000 10.36 0.00 0.00 4.58
679 682 0.103390 TTGGTGTTTGTCTCTCGCGA 59.897 50.000 9.26 9.26 0.00 5.87
682 686 2.240493 AGGTTGGTGTTTGTCTCTCG 57.760 50.000 0.00 0.00 0.00 4.04
687 691 1.612676 GGGGTAGGTTGGTGTTTGTC 58.387 55.000 0.00 0.00 0.00 3.18
791 800 4.651503 TCTCTCTCTCTCTCTCTCTCTTCC 59.348 50.000 0.00 0.00 0.00 3.46
818 827 4.200283 GGCTACTGCTCGCGCTCT 62.200 66.667 5.56 0.00 39.59 4.09
819 828 4.498520 TGGCTACTGCTCGCGCTC 62.499 66.667 5.56 0.00 39.59 5.03
820 829 4.803426 GTGGCTACTGCTCGCGCT 62.803 66.667 5.56 0.00 39.59 5.92
822 831 3.181967 GTGTGGCTACTGCTCGCG 61.182 66.667 0.00 0.00 39.59 5.87
823 832 2.815647 GGTGTGGCTACTGCTCGC 60.816 66.667 0.64 0.00 39.59 5.03
824 833 0.459899 TATGGTGTGGCTACTGCTCG 59.540 55.000 0.64 0.00 39.59 5.03
825 834 1.482593 ACTATGGTGTGGCTACTGCTC 59.517 52.381 0.64 0.00 39.59 4.26
826 835 1.208052 CACTATGGTGTGGCTACTGCT 59.792 52.381 0.64 0.00 38.54 4.24
827 836 1.656652 CACTATGGTGTGGCTACTGC 58.343 55.000 0.64 0.00 38.54 4.40
849 858 1.988846 CCTCCCTCTGGTTTCCTTTCT 59.011 52.381 0.00 0.00 0.00 2.52
865 874 2.015726 TCTCTCCCTCCCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
1438 1474 1.225991 CAAACGCGCGCATACACAT 60.226 52.632 32.58 4.13 0.00 3.21
1483 1519 6.634035 CACATCGATTACATGGCAAATACTTG 59.366 38.462 0.00 0.00 35.49 3.16
1499 1535 1.308069 GCAGTGTGGCCACATCGATT 61.308 55.000 39.53 20.35 44.39 3.34
1511 1547 1.208358 CGCTGTGGATTGCAGTGTG 59.792 57.895 0.00 0.00 39.02 3.82
1837 1879 3.091545 AGTGGGAAAATGCATGTAGTGG 58.908 45.455 0.00 0.00 0.00 4.00
1929 1985 3.064207 GTTCATGCGACTACCAAAGACA 58.936 45.455 0.00 0.00 0.00 3.41
1930 1986 3.326747 AGTTCATGCGACTACCAAAGAC 58.673 45.455 0.35 0.00 0.00 3.01
1931 1987 3.678056 AGTTCATGCGACTACCAAAGA 57.322 42.857 0.35 0.00 0.00 2.52
1932 1988 5.168569 TCTAAGTTCATGCGACTACCAAAG 58.831 41.667 2.55 0.00 0.00 2.77
1933 1989 5.142061 TCTAAGTTCATGCGACTACCAAA 57.858 39.130 2.55 0.00 0.00 3.28
1987 2043 6.072838 CCTCTGTGATTGATGGTTATACATGC 60.073 42.308 0.00 0.00 0.00 4.06
2153 2209 4.485163 ACGCAAAGTATCTTTGGCAAATC 58.515 39.130 13.89 5.00 0.00 2.17
2171 2227 2.093921 TGCTAATGGTAAGCAGTACGCA 60.094 45.455 11.30 0.00 44.78 5.24
2722 2784 5.071250 TGAATACCCGCCAGACATTACTAAT 59.929 40.000 0.00 0.00 0.00 1.73
3409 3471 9.079833 CACCAATCATTGCTTTACATCTTTAAG 57.920 33.333 0.00 0.00 0.00 1.85
3455 3517 3.660501 TCTATGATCGCATACACCACC 57.339 47.619 0.00 0.00 35.94 4.61
3974 4036 8.325477 ACTCCCTCTGTAGCTTTTTATAAGAT 57.675 34.615 0.00 0.00 0.00 2.40
4060 4122 9.567776 TCTGTTTCAAATTACCAGAAACTATGA 57.432 29.630 15.52 9.80 46.82 2.15
4085 4147 2.565841 AGAGGCTTCAACACAGTTGTC 58.434 47.619 9.43 0.62 33.55 3.18
4241 4303 5.250235 TCATGACTAGATTTCCTGACGAC 57.750 43.478 0.00 0.00 0.00 4.34
4279 4341 4.558226 ATCAAGTCACTGCTTATGGACA 57.442 40.909 0.00 0.00 32.79 4.02
4352 4414 6.571605 ACGCCTCTCTTAACCTATTTACTTC 58.428 40.000 0.00 0.00 0.00 3.01
4366 4428 1.160137 GAACATGCAACGCCTCTCTT 58.840 50.000 0.00 0.00 0.00 2.85
4431 4493 5.173774 ACCAAATATGTCTTAAGCATGCG 57.826 39.130 13.01 0.00 0.00 4.73
4570 4748 2.103094 CGGGAGATATGCTCAACCAAGA 59.897 50.000 0.00 0.00 45.81 3.02
4620 4798 9.766277 GACTTCATGAGAGTTTCATTCAATTAC 57.234 33.333 10.56 0.00 44.14 1.89
4633 4811 4.727507 ACTATTGCGACTTCATGAGAGT 57.272 40.909 9.42 9.42 0.00 3.24
4647 4825 6.831769 TGAGAGACATTTTTCGAACTATTGC 58.168 36.000 0.00 0.00 0.00 3.56
4649 4827 8.499162 CAACTGAGAGACATTTTTCGAACTATT 58.501 33.333 0.00 0.00 0.00 1.73
4751 4929 2.160205 AGTGCATGCCATATGATCAGC 58.840 47.619 16.68 0.00 0.00 4.26
4876 5055 3.446442 AATGCCAGGTGAGACTCAAAT 57.554 42.857 6.76 0.00 0.00 2.32
5094 5273 4.562963 GGTCTAAACAACGAGGATCTTGGT 60.563 45.833 0.00 0.00 30.79 3.67
5106 5285 4.394729 TGGTTGATCTGGGTCTAAACAAC 58.605 43.478 0.00 0.00 36.47 3.32
5171 5350 7.068593 TCCACAAATTTTGAAGATCTTGACAGT 59.931 33.333 14.00 0.00 0.00 3.55
5244 5423 6.959639 AACTTGACTGGCTAAGAAATTTGA 57.040 33.333 0.00 0.00 0.00 2.69
5291 5470 8.786826 TGGAATATATAAATCCAAAGGTAGCG 57.213 34.615 14.95 0.00 40.19 4.26
5361 5541 4.527038 AGATCCTGAACTGACGGAAACTAA 59.473 41.667 0.00 0.00 0.00 2.24
5623 5860 9.185680 TGAGATACTGCAGTATAAAGAACTACA 57.814 33.333 33.75 21.18 40.99 2.74
5648 5885 4.701663 CACAGCAGTGTACCCCTG 57.298 61.111 0.22 5.50 40.92 4.45
5781 6018 8.738645 AAAAATCTAGCCCATTACTTACTCTG 57.261 34.615 0.00 0.00 0.00 3.35
5851 6089 9.360093 GGAGATATGAAGTGTTAATATCTTCCG 57.640 37.037 7.64 0.00 41.50 4.30
6345 6612 7.331026 ACACTTAAGCTATGCAGAGTTCAATA 58.669 34.615 10.55 0.00 0.00 1.90
6354 6621 6.183360 GGACACTTTACACTTAAGCTATGCAG 60.183 42.308 1.29 0.00 0.00 4.41
6514 6781 3.449918 TCCAGGATACCACACTGATTCA 58.550 45.455 0.00 0.00 34.21 2.57
6541 6808 5.572896 GCTGAAAACCTTGTGCATATTACAC 59.427 40.000 0.00 0.00 38.55 2.90
6544 6811 5.945784 AGAGCTGAAAACCTTGTGCATATTA 59.054 36.000 0.00 0.00 0.00 0.98
6737 7004 9.911788 AATTGAGATGATAAAAGAAGCCTCTTA 57.088 29.630 0.00 0.00 41.23 2.10
6738 7005 8.820153 AATTGAGATGATAAAAGAAGCCTCTT 57.180 30.769 0.00 0.00 44.11 2.85
6739 7006 8.820153 AAATTGAGATGATAAAAGAAGCCTCT 57.180 30.769 0.00 0.00 0.00 3.69
6873 7140 1.457346 GCATGTCAGACAGGGGAAAG 58.543 55.000 16.72 0.00 29.37 2.62
7018 7285 0.252479 CCAGAAGGCTCAGATGCTGT 59.748 55.000 0.00 0.00 32.61 4.40
7226 7493 5.958321 TGCAATGTTATTATACATGGGGGA 58.042 37.500 0.00 0.00 38.69 4.81
7483 7751 2.888414 TCCACACCGATTGCGAGATATA 59.112 45.455 0.00 0.00 40.82 0.86
7571 7839 1.074889 GGAAGGCTAGGACCAAAACCA 59.925 52.381 0.00 0.00 0.00 3.67
7746 8016 6.594547 GGTAGTCTGAAACTGGATAAGGTTTC 59.405 42.308 10.43 10.43 46.46 2.78
7792 8062 3.581024 TCGAAGCGGTAACATGTAGTT 57.419 42.857 0.00 0.00 44.27 2.24
7794 8064 3.303495 CAGTTCGAAGCGGTAACATGTAG 59.697 47.826 0.00 0.00 0.00 2.74
7820 8090 0.889994 TGCCAGCCACTTGCAATAAG 59.110 50.000 0.00 0.00 44.83 1.73
7929 8209 9.567848 AATAATGAATGACCAATTGTTTCGTAC 57.432 29.630 4.43 0.00 0.00 3.67
7938 8218 9.204337 TCATTCCTCAATAATGAATGACCAATT 57.796 29.630 9.42 0.00 45.60 2.32
8037 8318 0.888619 ATCAGAGAAGACGCCAACGA 59.111 50.000 0.00 0.00 43.93 3.85
8039 8320 2.370281 TGATCAGAGAAGACGCCAAC 57.630 50.000 0.00 0.00 0.00 3.77
8045 8350 4.984161 GCTCAGCTATTGATCAGAGAAGAC 59.016 45.833 10.65 0.00 34.68 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.