Multiple sequence alignment - TraesCS3D01G181900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G181900 chr3D 100.000 6652 0 0 1 6652 164994550 164987899 0.000000e+00 12285.0
1 TraesCS3D01G181900 chr3D 87.179 507 56 4 1329 1834 603818665 603819163 9.680000e-158 568.0
2 TraesCS3D01G181900 chr3D 87.375 499 56 3 1339 1836 55719999 55719507 3.480000e-157 566.0
3 TraesCS3D01G181900 chr3D 78.832 137 28 1 24 159 511566302 511566438 2.550000e-14 91.6
4 TraesCS3D01G181900 chr3D 87.302 63 6 2 4750 4810 131489219 131489157 3.330000e-08 71.3
5 TraesCS3D01G181900 chr3A 95.868 6316 187 35 22 6303 206622400 206628675 0.000000e+00 10150.0
6 TraesCS3D01G181900 chr3A 87.273 55 5 2 191 244 45187524 45187577 2.000000e-05 62.1
7 TraesCS3D01G181900 chr3B 96.440 4775 122 22 245 4987 240597914 240593156 0.000000e+00 7832.0
8 TraesCS3D01G181900 chr3B 97.661 1197 23 3 5112 6303 240592343 240591147 0.000000e+00 2050.0
9 TraesCS3D01G181900 chr3B 94.509 346 19 0 6307 6652 389321679 389321334 9.820000e-148 534.0
10 TraesCS3D01G181900 chr3B 95.238 126 6 0 4989 5114 240592561 240592436 4.070000e-47 200.0
11 TraesCS3D01G181900 chr3B 86.755 151 18 2 24 173 23954252 23954401 4.130000e-37 167.0
12 TraesCS3D01G181900 chr3B 80.292 137 19 3 24 159 673299917 673300046 5.490000e-16 97.1
13 TraesCS3D01G181900 chr1D 94.508 528 25 3 1637 2163 65740992 65741516 0.000000e+00 811.0
14 TraesCS3D01G181900 chr1D 81.899 895 94 22 2842 3711 455097809 455096958 0.000000e+00 693.0
15 TraesCS3D01G181900 chr1D 82.184 696 70 21 2425 3114 422880050 422880697 3.510000e-152 549.0
16 TraesCS3D01G181900 chr1D 94.587 351 17 2 6302 6652 476232006 476232354 5.870000e-150 542.0
17 TraesCS3D01G181900 chr1D 85.714 154 20 2 21 173 13350044 13350196 1.920000e-35 161.0
18 TraesCS3D01G181900 chr1D 82.609 138 24 0 21 158 442369670 442369807 9.060000e-24 122.0
19 TraesCS3D01G181900 chr7D 94.129 528 26 4 1637 2163 173527288 173527811 0.000000e+00 798.0
20 TraesCS3D01G181900 chr7D 88.531 497 50 3 1339 1834 578173934 578174424 4.440000e-166 595.0
21 TraesCS3D01G181900 chr7D 92.437 357 26 1 6297 6652 565051150 565050794 5.950000e-140 508.0
22 TraesCS3D01G181900 chr7D 86.928 153 18 2 22 173 590859841 590859690 3.190000e-38 171.0
23 TraesCS3D01G181900 chr7D 85.806 155 20 2 21 173 590915262 590915108 5.340000e-36 163.0
24 TraesCS3D01G181900 chr5D 93.371 528 31 3 1637 2163 221498624 221499148 0.000000e+00 778.0
25 TraesCS3D01G181900 chr5D 93.371 528 29 5 1637 2163 237989 237467 0.000000e+00 776.0
26 TraesCS3D01G181900 chr5D 94.269 349 18 1 6306 6652 540353058 540353406 3.530000e-147 532.0
27 TraesCS3D01G181900 chrUn 93.359 527 31 3 1637 2162 144595951 144596474 0.000000e+00 776.0
28 TraesCS3D01G181900 chrUn 87.726 497 54 3 1339 1834 260711791 260711301 2.080000e-159 573.0
29 TraesCS3D01G181900 chr5B 92.979 527 33 3 1637 2162 328373 327850 0.000000e+00 765.0
30 TraesCS3D01G181900 chr7A 92.803 528 34 3 1637 2163 622693730 622693206 0.000000e+00 761.0
31 TraesCS3D01G181900 chr7A 86.087 115 16 0 48 162 731500010 731500124 2.520000e-24 124.0
32 TraesCS3D01G181900 chr7A 89.831 59 3 3 4750 4806 85209353 85209296 9.250000e-09 73.1
33 TraesCS3D01G181900 chr7A 87.273 55 5 2 191 244 185182974 185183027 2.000000e-05 62.1
34 TraesCS3D01G181900 chr6D 83.119 776 81 17 2880 3629 197299673 197300424 0.000000e+00 662.0
35 TraesCS3D01G181900 chr6D 88.771 472 47 2 1339 1810 55143354 55142889 2.080000e-159 573.0
36 TraesCS3D01G181900 chr6D 90.132 152 13 2 22 171 27033950 27034101 5.260000e-46 196.0
37 TraesCS3D01G181900 chr4A 87.349 498 55 4 1339 1834 598469029 598468538 1.250000e-156 564.0
38 TraesCS3D01G181900 chr4A 86.250 160 20 1 22 179 505496946 505497105 8.870000e-39 172.0
39 TraesCS3D01G181900 chr4A 85.806 155 20 1 21 173 640254543 640254389 5.340000e-36 163.0
40 TraesCS3D01G181900 chr1B 86.785 507 58 4 1329 1834 3440037 3440535 2.100000e-154 556.0
41 TraesCS3D01G181900 chr6B 94.269 349 18 2 6306 6652 603840219 603840567 3.530000e-147 532.0
42 TraesCS3D01G181900 chr7B 93.503 354 20 3 6301 6652 1809710 1810062 2.130000e-144 523.0
43 TraesCS3D01G181900 chr2A 93.084 347 23 1 6306 6652 73323694 73324039 2.140000e-139 507.0
44 TraesCS3D01G181900 chr2A 92.507 347 24 2 6306 6651 38691157 38690812 4.630000e-136 496.0
45 TraesCS3D01G181900 chr2A 90.909 55 4 1 4754 4807 373869005 373868951 9.250000e-09 73.1
46 TraesCS3D01G181900 chr2B 92.486 346 26 0 6307 6652 24838690 24839035 4.630000e-136 496.0
47 TraesCS3D01G181900 chr2B 84.940 166 21 4 22 186 740809460 740809622 1.480000e-36 165.0
48 TraesCS3D01G181900 chr2B 90.909 55 4 1 4754 4807 358674745 358674799 9.250000e-09 73.1
49 TraesCS3D01G181900 chr2B 93.617 47 2 1 4758 4803 291618314 291618268 1.200000e-07 69.4
50 TraesCS3D01G181900 chr4D 82.609 138 23 1 22 159 7915391 7915527 3.260000e-23 121.0
51 TraesCS3D01G181900 chr5A 90.909 55 3 2 4750 4802 290393863 290393809 9.250000e-09 73.1
52 TraesCS3D01G181900 chr2D 88.710 62 4 3 4757 4815 606115818 606115757 9.250000e-09 73.1
53 TraesCS3D01G181900 chr4B 97.297 37 1 0 208 244 283760432 283760396 5.570000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G181900 chr3D 164987899 164994550 6651 True 12285.000000 12285 100.000000 1 6652 1 chr3D.!!$R3 6651
1 TraesCS3D01G181900 chr3A 206622400 206628675 6275 False 10150.000000 10150 95.868000 22 6303 1 chr3A.!!$F2 6281
2 TraesCS3D01G181900 chr3B 240591147 240597914 6767 True 3360.666667 7832 96.446333 245 6303 3 chr3B.!!$R2 6058
3 TraesCS3D01G181900 chr1D 65740992 65741516 524 False 811.000000 811 94.508000 1637 2163 1 chr1D.!!$F2 526
4 TraesCS3D01G181900 chr1D 455096958 455097809 851 True 693.000000 693 81.899000 2842 3711 1 chr1D.!!$R1 869
5 TraesCS3D01G181900 chr1D 422880050 422880697 647 False 549.000000 549 82.184000 2425 3114 1 chr1D.!!$F3 689
6 TraesCS3D01G181900 chr7D 173527288 173527811 523 False 798.000000 798 94.129000 1637 2163 1 chr7D.!!$F1 526
7 TraesCS3D01G181900 chr5D 221498624 221499148 524 False 778.000000 778 93.371000 1637 2163 1 chr5D.!!$F1 526
8 TraesCS3D01G181900 chr5D 237467 237989 522 True 776.000000 776 93.371000 1637 2163 1 chr5D.!!$R1 526
9 TraesCS3D01G181900 chrUn 144595951 144596474 523 False 776.000000 776 93.359000 1637 2162 1 chrUn.!!$F1 525
10 TraesCS3D01G181900 chr5B 327850 328373 523 True 765.000000 765 92.979000 1637 2162 1 chr5B.!!$R1 525
11 TraesCS3D01G181900 chr7A 622693206 622693730 524 True 761.000000 761 92.803000 1637 2163 1 chr7A.!!$R2 526
12 TraesCS3D01G181900 chr6D 197299673 197300424 751 False 662.000000 662 83.119000 2880 3629 1 chr6D.!!$F2 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 663 0.605589 CTTCCCCTCGGTTTCACCAC 60.606 60.000 0.00 0.0 38.47 4.16 F
1165 1174 1.686587 GTGTGTTTTGGGAAAGGAGGG 59.313 52.381 0.00 0.0 0.00 4.30 F
1826 1839 0.104855 TCAGCACTCGGTCATATGGC 59.895 55.000 2.13 0.0 0.00 4.40 F
2939 2957 1.803334 TCGGGAGCATTGTGTTGTAC 58.197 50.000 0.00 0.0 0.00 2.90 F
3244 3290 1.195674 GAAGTTGTCTTTCCAGAGCGC 59.804 52.381 0.00 0.0 33.64 5.92 F
3957 4009 0.607217 TGTGCATGCAAGAGGGTCTG 60.607 55.000 24.58 0.0 0.00 3.51 F
4921 4997 4.324331 GCAGGTTACTGGGAGGTTATTTCT 60.324 45.833 0.00 0.0 45.04 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1635 0.179124 GCTCGTGACAGGCTCCTAAG 60.179 60.000 0.00 0.00 0.00 2.18 R
2517 2534 0.329261 CATGTTCTGGCCCTTCTGGA 59.671 55.000 0.00 0.00 35.39 3.86 R
3200 3246 0.961019 TTGTCACTTGAAGGCCATGC 59.039 50.000 5.01 0.00 0.00 4.06 R
3957 4009 1.464997 GAAGGTCAATGGACGCAGAAC 59.535 52.381 0.00 0.00 45.28 3.01 R
5041 5710 1.330521 ACGAACATATTGCGATGTGCC 59.669 47.619 10.42 2.73 45.60 5.01 R
5312 6080 0.675083 TGCAAAACCCATGCTGTGAG 59.325 50.000 0.00 0.00 44.14 3.51 R
6568 7338 0.034670 GAGGCCAGAGAGCATTTGGT 60.035 55.000 5.01 0.00 34.43 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.501610 GGGGACGAGTGGAGATGC 59.498 66.667 0.00 0.00 0.00 3.91
20 21 2.060980 GGGGACGAGTGGAGATGCT 61.061 63.158 0.00 0.00 0.00 3.79
26 27 1.407258 ACGAGTGGAGATGCTCTTAGC 59.593 52.381 0.00 0.00 42.82 3.09
41 42 1.927174 CTTAGCATGACGACTTTCCGG 59.073 52.381 0.00 0.00 0.00 5.14
42 43 0.892755 TAGCATGACGACTTTCCGGT 59.107 50.000 0.00 0.00 0.00 5.28
78 79 3.551496 TTTGCCCGGCTCCAGTGAG 62.551 63.158 11.61 0.00 41.84 3.51
122 123 3.918220 GCGGCTCGATTCAGTGCG 61.918 66.667 0.00 0.00 0.00 5.34
126 127 1.417592 GCTCGATTCAGTGCGTGTG 59.582 57.895 0.00 0.00 0.00 3.82
148 149 0.885879 CGCCGCTAGGTGGTATATGA 59.114 55.000 0.00 0.00 44.11 2.15
159 160 6.119240 AGGTGGTATATGAATCTGGATGTG 57.881 41.667 0.00 0.00 0.00 3.21
212 215 9.220906 AGGGTTATTTCTAATATGGTCTGTACA 57.779 33.333 0.00 0.00 0.00 2.90
243 249 9.636789 TGATTGATGATGAATAGATTGGAAGTT 57.363 29.630 0.00 0.00 0.00 2.66
284 292 8.520351 AGGAAAGATAAACGTTTTTAAGATGGG 58.480 33.333 20.19 0.00 30.86 4.00
373 381 2.604614 GGACAAAGATTGTTCCACACGC 60.605 50.000 0.00 0.00 45.52 5.34
378 386 1.873591 AGATTGTTCCACACGCTGTTC 59.126 47.619 0.00 0.00 0.00 3.18
654 663 0.605589 CTTCCCCTCGGTTTCACCAC 60.606 60.000 0.00 0.00 38.47 4.16
1131 1140 4.794439 GTGCGCAATTTCGGGCCC 62.794 66.667 14.00 13.57 43.75 5.80
1165 1174 1.686587 GTGTGTTTTGGGAAAGGAGGG 59.313 52.381 0.00 0.00 0.00 4.30
1461 1470 6.540551 GCTTCTCTTCTCCCGATTTTATTTCT 59.459 38.462 0.00 0.00 0.00 2.52
1557 1568 3.412386 ACAGGTTCAATTACAGCTGGTC 58.588 45.455 19.93 0.00 41.86 4.02
1739 1751 2.094442 GCCTTCTTGTCTTAGTCTCGCT 60.094 50.000 0.00 0.00 0.00 4.93
1826 1839 0.104855 TCAGCACTCGGTCATATGGC 59.895 55.000 2.13 0.00 0.00 4.40
2221 2234 5.372343 TGGTGGATTGCTTACAGTATCAT 57.628 39.130 0.00 0.00 0.00 2.45
2222 2235 5.754782 TGGTGGATTGCTTACAGTATCATT 58.245 37.500 0.00 0.00 0.00 2.57
2904 2922 8.641155 TGATACAACGTTTACTGTCTAATTTCG 58.359 33.333 0.00 0.00 0.00 3.46
2922 2940 3.989705 TCGCAAACTCACAATGTATCG 57.010 42.857 0.00 0.00 0.00 2.92
2939 2957 1.803334 TCGGGAGCATTGTGTTGTAC 58.197 50.000 0.00 0.00 0.00 2.90
3048 3094 4.019411 TGAACTGCCCTGATGACTTCATTA 60.019 41.667 0.00 0.00 36.57 1.90
3200 3246 5.784750 TTATGCATCGTTGTCTTCTTCAG 57.215 39.130 0.19 0.00 0.00 3.02
3244 3290 1.195674 GAAGTTGTCTTTCCAGAGCGC 59.804 52.381 0.00 0.00 33.64 5.92
3304 3350 3.377172 GGACCTGTAAATTTGGATCCACG 59.623 47.826 15.91 0.00 0.00 4.94
3382 3428 2.766828 CCCTCTAGGTCTTCCAATTCGT 59.233 50.000 0.00 0.00 35.89 3.85
3469 3516 6.969993 TGGAAGTTAAACCAAAAGCATACT 57.030 33.333 0.00 0.00 32.93 2.12
3470 3517 6.744112 TGGAAGTTAAACCAAAAGCATACTG 58.256 36.000 0.00 0.00 32.93 2.74
3578 3625 7.786305 TTCATTTACTCGTGTAGTTTAGTCG 57.214 36.000 0.00 0.00 39.80 4.18
3591 3640 7.589954 GTGTAGTTTAGTCGAATTGCAAATTGT 59.410 33.333 1.71 0.00 0.00 2.71
3597 3646 9.982291 TTTAGTCGAATTGCAAATTGTATAGTC 57.018 29.630 1.71 0.00 0.00 2.59
3607 3658 7.398829 TGCAAATTGTATAGTCAGGGAAGTAA 58.601 34.615 0.00 0.00 0.00 2.24
3644 3696 8.410912 GTTTCCAGTTATTACAGGTTTTGAGTT 58.589 33.333 0.00 0.00 32.98 3.01
3664 3716 6.482308 TGAGTTTTACTGTAGGACTTGAAAGC 59.518 38.462 6.61 0.00 0.00 3.51
3805 3857 7.573710 TCAGCAAATACACCTTCCATATACTT 58.426 34.615 0.00 0.00 0.00 2.24
3873 3925 7.048512 GTCTGAGTTTAGCCCATTGTATAGTT 58.951 38.462 0.00 0.00 0.00 2.24
3894 3946 5.471456 AGTTGACTAGAATGTGAAGCAAAGG 59.529 40.000 0.00 0.00 0.00 3.11
3957 4009 0.607217 TGTGCATGCAAGAGGGTCTG 60.607 55.000 24.58 0.00 0.00 3.51
4025 4077 9.601217 AAGAATATTATGTGTAGGACAGTGTTC 57.399 33.333 0.00 0.00 38.23 3.18
4234 4286 7.824672 AGAAACTTCTGAGCATTGGAAAATAG 58.175 34.615 0.00 0.00 35.89 1.73
4618 4673 7.305474 GTGTATGTGTACCATTTCTTCCTTTG 58.695 38.462 2.73 0.00 34.86 2.77
4880 4955 6.293135 CCTCTTTTGCTTTCACTAGAGTTCAC 60.293 42.308 0.00 0.00 32.35 3.18
4921 4997 4.324331 GCAGGTTACTGGGAGGTTATTTCT 60.324 45.833 0.00 0.00 45.04 2.52
4925 5001 8.148999 CAGGTTACTGGGAGGTTATTTCTATAC 58.851 40.741 0.00 0.00 41.13 1.47
4987 5063 7.115095 GTGTTAGCACCTATCAGTATCGATTTC 59.885 40.741 1.71 0.00 39.61 2.17
5023 5692 7.721402 AGCCGCAATGGTTATGAATTTAATTA 58.279 30.769 0.00 0.00 41.21 1.40
5167 5931 9.722056 GCACAGTAGAATTTAATCTGTTATTGG 57.278 33.333 0.00 0.00 37.27 3.16
5208 5972 7.709947 ACATGCAAATACACAAGATAATCTGG 58.290 34.615 0.00 0.00 0.00 3.86
5211 5975 8.978874 TGCAAATACACAAGATAATCTGGTAT 57.021 30.769 0.00 0.00 27.41 2.73
5312 6080 2.289565 GCCCAGCCATGTCTTTACTAC 58.710 52.381 0.00 0.00 0.00 2.73
5573 6341 4.305989 TGCTGGACAGTTGTCAAAAATC 57.694 40.909 13.73 0.00 46.47 2.17
5929 6698 1.613437 ACCCTGCCATTTTTCTGTTCG 59.387 47.619 0.00 0.00 0.00 3.95
6186 6956 4.866486 ACATAAGAACGTCGTAATGGAACC 59.134 41.667 0.00 0.00 0.00 3.62
6250 7020 6.021596 CAGTTGCTTAATTGTTCATCGGTAC 58.978 40.000 0.00 0.00 0.00 3.34
6259 7029 5.666969 TTGTTCATCGGTACAAGTTTGAG 57.333 39.130 0.00 0.00 31.69 3.02
6283 7053 4.280174 TCTGTCAGTAGGTAACACCAGTTC 59.720 45.833 0.00 0.00 41.95 3.01
6295 7065 1.808945 CACCAGTTCTGTGGCTCATTC 59.191 52.381 0.00 0.00 41.90 2.67
6303 7073 4.090761 TCTGTGGCTCATTCTGTTCTTT 57.909 40.909 0.00 0.00 0.00 2.52
6304 7074 3.817084 TCTGTGGCTCATTCTGTTCTTTG 59.183 43.478 0.00 0.00 0.00 2.77
6305 7075 3.554934 TGTGGCTCATTCTGTTCTTTGT 58.445 40.909 0.00 0.00 0.00 2.83
6306 7076 3.953612 TGTGGCTCATTCTGTTCTTTGTT 59.046 39.130 0.00 0.00 0.00 2.83
6307 7077 4.402155 TGTGGCTCATTCTGTTCTTTGTTT 59.598 37.500 0.00 0.00 0.00 2.83
6308 7078 5.105392 TGTGGCTCATTCTGTTCTTTGTTTT 60.105 36.000 0.00 0.00 0.00 2.43
6309 7079 5.812127 GTGGCTCATTCTGTTCTTTGTTTTT 59.188 36.000 0.00 0.00 0.00 1.94
6347 7117 4.399395 CCGGCCTCTGCAGCAGAA 62.399 66.667 25.35 10.07 40.18 3.02
6348 7118 3.123620 CGGCCTCTGCAGCAGAAC 61.124 66.667 25.35 19.30 40.18 3.01
6349 7119 3.123620 GGCCTCTGCAGCAGAACG 61.124 66.667 25.35 18.51 40.18 3.95
6350 7120 2.047844 GCCTCTGCAGCAGAACGA 60.048 61.111 25.35 4.19 40.18 3.85
6351 7121 1.449246 GCCTCTGCAGCAGAACGAT 60.449 57.895 25.35 0.00 40.18 3.73
6352 7122 1.703438 GCCTCTGCAGCAGAACGATG 61.703 60.000 25.35 13.38 40.18 3.84
6360 7130 1.276844 GCAGAACGATGCATACGGC 59.723 57.895 18.34 10.97 45.77 5.68
6361 7131 1.934463 CAGAACGATGCATACGGCC 59.066 57.895 18.34 0.00 43.89 6.13
6362 7132 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
6363 7133 0.106708 AGAACGATGCATACGGCCAT 59.893 50.000 18.34 0.00 43.89 4.40
6364 7134 0.235665 GAACGATGCATACGGCCATG 59.764 55.000 18.34 0.07 43.89 3.66
6365 7135 0.179059 AACGATGCATACGGCCATGA 60.179 50.000 18.34 0.00 43.89 3.07
6366 7136 0.035317 ACGATGCATACGGCCATGAT 59.965 50.000 18.34 0.00 43.89 2.45
6367 7137 1.159285 CGATGCATACGGCCATGATT 58.841 50.000 2.24 0.00 43.89 2.57
6368 7138 2.289382 ACGATGCATACGGCCATGATTA 60.289 45.455 18.34 0.00 43.89 1.75
6369 7139 2.938451 CGATGCATACGGCCATGATTAT 59.062 45.455 2.24 0.00 43.89 1.28
6370 7140 3.374988 CGATGCATACGGCCATGATTATT 59.625 43.478 2.24 0.00 43.89 1.40
6371 7141 4.570369 CGATGCATACGGCCATGATTATTA 59.430 41.667 2.24 0.00 43.89 0.98
6372 7142 5.064579 CGATGCATACGGCCATGATTATTAA 59.935 40.000 2.24 0.00 43.89 1.40
6373 7143 6.238456 CGATGCATACGGCCATGATTATTAAT 60.238 38.462 2.24 0.00 43.89 1.40
6374 7144 7.042119 CGATGCATACGGCCATGATTATTAATA 60.042 37.037 2.24 0.00 43.89 0.98
6375 7145 7.929941 TGCATACGGCCATGATTATTAATAA 57.070 32.000 10.27 10.27 43.89 1.40
6376 7146 7.984391 TGCATACGGCCATGATTATTAATAAG 58.016 34.615 13.15 1.38 43.89 1.73
6377 7147 6.912591 GCATACGGCCATGATTATTAATAAGC 59.087 38.462 15.06 15.06 36.11 3.09
6378 7148 7.415095 GCATACGGCCATGATTATTAATAAGCA 60.415 37.037 24.08 24.08 38.59 3.91
6379 7149 6.892658 ACGGCCATGATTATTAATAAGCAA 57.107 33.333 25.23 12.33 41.32 3.91
6380 7150 7.283625 ACGGCCATGATTATTAATAAGCAAA 57.716 32.000 25.23 7.88 41.32 3.68
6381 7151 7.721402 ACGGCCATGATTATTAATAAGCAAAA 58.279 30.769 25.23 7.23 41.32 2.44
6382 7152 7.867403 ACGGCCATGATTATTAATAAGCAAAAG 59.133 33.333 25.23 18.20 41.32 2.27
6383 7153 7.329226 CGGCCATGATTATTAATAAGCAAAAGG 59.671 37.037 25.23 24.59 41.32 3.11
6384 7154 8.150296 GGCCATGATTATTAATAAGCAAAAGGT 58.850 33.333 25.23 9.77 41.32 3.50
6385 7155 9.196552 GCCATGATTATTAATAAGCAAAAGGTC 57.803 33.333 25.23 18.34 41.32 3.85
6395 7165 7.524717 AATAAGCAAAAGGTCTTACACATGT 57.475 32.000 0.00 0.00 0.00 3.21
6396 7166 5.438761 AAGCAAAAGGTCTTACACATGTC 57.561 39.130 0.00 0.00 0.00 3.06
6397 7167 4.718961 AGCAAAAGGTCTTACACATGTCT 58.281 39.130 0.00 0.00 0.00 3.41
6398 7168 5.133221 AGCAAAAGGTCTTACACATGTCTT 58.867 37.500 0.00 0.00 0.00 3.01
6399 7169 5.009010 AGCAAAAGGTCTTACACATGTCTTG 59.991 40.000 0.00 0.00 0.00 3.02
6400 7170 5.221048 GCAAAAGGTCTTACACATGTCTTGT 60.221 40.000 0.00 0.00 39.91 3.16
6401 7171 6.680378 GCAAAAGGTCTTACACATGTCTTGTT 60.680 38.462 0.00 0.00 36.00 2.83
6402 7172 6.377327 AAAGGTCTTACACATGTCTTGTTG 57.623 37.500 0.00 0.00 36.00 3.33
6403 7173 5.036117 AGGTCTTACACATGTCTTGTTGT 57.964 39.130 0.00 0.00 36.00 3.32
6404 7174 5.057149 AGGTCTTACACATGTCTTGTTGTC 58.943 41.667 0.00 0.00 36.00 3.18
6405 7175 5.057149 GGTCTTACACATGTCTTGTTGTCT 58.943 41.667 0.00 0.00 36.00 3.41
6406 7176 5.177696 GGTCTTACACATGTCTTGTTGTCTC 59.822 44.000 0.00 0.00 36.00 3.36
6407 7177 5.753438 GTCTTACACATGTCTTGTTGTCTCA 59.247 40.000 0.00 0.00 36.00 3.27
6408 7178 6.257849 GTCTTACACATGTCTTGTTGTCTCAA 59.742 38.462 0.00 0.00 36.00 3.02
6409 7179 6.992123 TCTTACACATGTCTTGTTGTCTCAAT 59.008 34.615 0.00 0.00 36.00 2.57
6410 7180 5.679734 ACACATGTCTTGTTGTCTCAATC 57.320 39.130 0.00 0.00 36.00 2.67
6411 7181 5.125356 ACACATGTCTTGTTGTCTCAATCA 58.875 37.500 0.00 0.00 36.00 2.57
6412 7182 5.589855 ACACATGTCTTGTTGTCTCAATCAA 59.410 36.000 0.00 0.00 36.00 2.57
6413 7183 6.140786 CACATGTCTTGTTGTCTCAATCAAG 58.859 40.000 0.00 13.26 36.00 3.02
6414 7184 5.240183 ACATGTCTTGTTGTCTCAATCAAGG 59.760 40.000 16.38 8.97 38.13 3.61
6415 7185 5.034852 TGTCTTGTTGTCTCAATCAAGGA 57.965 39.130 16.38 7.96 38.13 3.36
6416 7186 5.436175 TGTCTTGTTGTCTCAATCAAGGAA 58.564 37.500 16.38 8.72 38.13 3.36
6417 7187 5.296780 TGTCTTGTTGTCTCAATCAAGGAAC 59.703 40.000 16.38 12.10 38.13 3.62
6418 7188 5.296780 GTCTTGTTGTCTCAATCAAGGAACA 59.703 40.000 16.38 0.00 38.13 3.18
6419 7189 5.885352 TCTTGTTGTCTCAATCAAGGAACAA 59.115 36.000 16.38 0.00 38.13 2.83
6420 7190 6.376864 TCTTGTTGTCTCAATCAAGGAACAAA 59.623 34.615 16.38 0.00 38.13 2.83
6421 7191 6.522625 TGTTGTCTCAATCAAGGAACAAAA 57.477 33.333 0.00 0.00 0.00 2.44
6422 7192 6.563422 TGTTGTCTCAATCAAGGAACAAAAG 58.437 36.000 0.00 0.00 0.00 2.27
6423 7193 5.772825 TGTCTCAATCAAGGAACAAAAGG 57.227 39.130 0.00 0.00 0.00 3.11
6424 7194 4.037923 TGTCTCAATCAAGGAACAAAAGGC 59.962 41.667 0.00 0.00 0.00 4.35
6425 7195 4.279420 GTCTCAATCAAGGAACAAAAGGCT 59.721 41.667 0.00 0.00 0.00 4.58
6426 7196 4.520492 TCTCAATCAAGGAACAAAAGGCTC 59.480 41.667 0.00 0.00 0.00 4.70
6427 7197 4.214310 TCAATCAAGGAACAAAAGGCTCA 58.786 39.130 0.00 0.00 0.00 4.26
6428 7198 4.037923 TCAATCAAGGAACAAAAGGCTCAC 59.962 41.667 0.00 0.00 0.00 3.51
6429 7199 3.011566 TCAAGGAACAAAAGGCTCACA 57.988 42.857 0.00 0.00 0.00 3.58
6430 7200 3.360867 TCAAGGAACAAAAGGCTCACAA 58.639 40.909 0.00 0.00 0.00 3.33
6431 7201 3.766591 TCAAGGAACAAAAGGCTCACAAA 59.233 39.130 0.00 0.00 0.00 2.83
6432 7202 4.114794 CAAGGAACAAAAGGCTCACAAAG 58.885 43.478 0.00 0.00 0.00 2.77
6433 7203 3.631250 AGGAACAAAAGGCTCACAAAGA 58.369 40.909 0.00 0.00 0.00 2.52
6450 7220 9.657121 CTCACAAAGAGCTAAAAAGTAAAAGAG 57.343 33.333 0.00 0.00 37.59 2.85
6451 7221 9.391006 TCACAAAGAGCTAAAAAGTAAAAGAGA 57.609 29.630 0.00 0.00 0.00 3.10
6454 7224 9.175060 CAAAGAGCTAAAAAGTAAAAGAGAAGC 57.825 33.333 0.00 0.00 0.00 3.86
6455 7225 7.441890 AGAGCTAAAAAGTAAAAGAGAAGCC 57.558 36.000 0.00 0.00 0.00 4.35
6456 7226 6.998673 AGAGCTAAAAAGTAAAAGAGAAGCCA 59.001 34.615 0.00 0.00 0.00 4.75
6457 7227 6.971602 AGCTAAAAAGTAAAAGAGAAGCCAC 58.028 36.000 0.00 0.00 0.00 5.01
6458 7228 6.546034 AGCTAAAAAGTAAAAGAGAAGCCACA 59.454 34.615 0.00 0.00 0.00 4.17
6459 7229 7.068226 AGCTAAAAAGTAAAAGAGAAGCCACAA 59.932 33.333 0.00 0.00 0.00 3.33
6460 7230 7.167635 GCTAAAAAGTAAAAGAGAAGCCACAAC 59.832 37.037 0.00 0.00 0.00 3.32
6461 7231 5.515797 AAAGTAAAAGAGAAGCCACAACC 57.484 39.130 0.00 0.00 0.00 3.77
6462 7232 3.139077 AGTAAAAGAGAAGCCACAACCG 58.861 45.455 0.00 0.00 0.00 4.44
6463 7233 1.318576 AAAAGAGAAGCCACAACCGG 58.681 50.000 0.00 0.00 0.00 5.28
6471 7241 3.222855 CCACAACCGGCTGGCAAA 61.223 61.111 12.89 0.00 39.70 3.68
6472 7242 2.790791 CCACAACCGGCTGGCAAAA 61.791 57.895 12.89 0.00 39.70 2.44
6473 7243 1.142748 CACAACCGGCTGGCAAAAA 59.857 52.632 12.89 0.00 39.70 1.94
6474 7244 1.142965 ACAACCGGCTGGCAAAAAC 59.857 52.632 12.89 0.00 39.70 2.43
6475 7245 1.948635 CAACCGGCTGGCAAAAACG 60.949 57.895 12.89 0.00 39.70 3.60
6476 7246 2.122167 AACCGGCTGGCAAAAACGA 61.122 52.632 12.89 0.00 39.70 3.85
6477 7247 1.460273 AACCGGCTGGCAAAAACGAT 61.460 50.000 12.89 0.00 39.70 3.73
6478 7248 0.606944 ACCGGCTGGCAAAAACGATA 60.607 50.000 12.89 0.00 39.70 2.92
6479 7249 0.098728 CCGGCTGGCAAAAACGATAG 59.901 55.000 0.00 0.00 46.19 2.08
6480 7250 0.098728 CGGCTGGCAAAAACGATAGG 59.901 55.000 1.08 0.00 43.77 2.57
6481 7251 1.459450 GGCTGGCAAAAACGATAGGA 58.541 50.000 0.00 0.00 43.77 2.94
6482 7252 1.816224 GGCTGGCAAAAACGATAGGAA 59.184 47.619 0.00 0.00 43.77 3.36
6483 7253 2.415491 GGCTGGCAAAAACGATAGGAAC 60.415 50.000 0.00 0.00 43.77 3.62
6484 7254 2.488153 GCTGGCAAAAACGATAGGAACT 59.512 45.455 0.00 0.00 46.37 3.01
6503 7273 8.562949 AGGAACTAAAAGCCTATCCTATTACA 57.437 34.615 0.00 0.00 36.02 2.41
6504 7274 9.172060 AGGAACTAAAAGCCTATCCTATTACAT 57.828 33.333 0.00 0.00 36.02 2.29
6505 7275 9.220767 GGAACTAAAAGCCTATCCTATTACATG 57.779 37.037 0.00 0.00 0.00 3.21
6506 7276 9.998106 GAACTAAAAGCCTATCCTATTACATGA 57.002 33.333 0.00 0.00 0.00 3.07
6507 7277 9.780186 AACTAAAAGCCTATCCTATTACATGAC 57.220 33.333 0.00 0.00 0.00 3.06
6508 7278 8.376270 ACTAAAAGCCTATCCTATTACATGACC 58.624 37.037 0.00 0.00 0.00 4.02
6509 7279 5.407407 AAGCCTATCCTATTACATGACCG 57.593 43.478 0.00 0.00 0.00 4.79
6510 7280 3.195825 AGCCTATCCTATTACATGACCGC 59.804 47.826 0.00 0.00 0.00 5.68
6511 7281 3.679083 GCCTATCCTATTACATGACCGCC 60.679 52.174 0.00 0.00 0.00 6.13
6512 7282 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
6513 7283 4.162320 CCTATCCTATTACATGACCGCCAT 59.838 45.833 0.00 0.00 35.44 4.40
6514 7284 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
6515 7285 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
6516 7286 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
6517 7287 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
6518 7288 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
6519 7289 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
6520 7290 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
6521 7291 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
6522 7292 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
6524 7294 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
6525 7295 1.377463 CCGCCATCCAAACCGGTTA 60.377 57.895 22.60 5.30 36.18 2.85
6526 7296 0.961358 CCGCCATCCAAACCGGTTAA 60.961 55.000 22.60 9.93 36.18 2.01
6527 7297 0.882474 CGCCATCCAAACCGGTTAAA 59.118 50.000 22.60 9.54 35.57 1.52
6528 7298 1.269998 CGCCATCCAAACCGGTTAAAA 59.730 47.619 22.60 9.14 35.57 1.52
6529 7299 2.288273 CGCCATCCAAACCGGTTAAAAA 60.288 45.455 22.60 7.18 35.57 1.94
6530 7300 3.615351 CGCCATCCAAACCGGTTAAAAAT 60.615 43.478 22.60 9.31 35.57 1.82
6531 7301 4.380655 CGCCATCCAAACCGGTTAAAAATA 60.381 41.667 22.60 3.71 35.57 1.40
6532 7302 5.666462 GCCATCCAAACCGGTTAAAAATAT 58.334 37.500 22.60 0.00 35.57 1.28
6533 7303 5.751509 GCCATCCAAACCGGTTAAAAATATC 59.248 40.000 22.60 3.28 35.57 1.63
6534 7304 6.277605 CCATCCAAACCGGTTAAAAATATCC 58.722 40.000 22.60 0.00 35.57 2.59
6535 7305 5.918426 TCCAAACCGGTTAAAAATATCCC 57.082 39.130 22.60 0.00 35.57 3.85
6536 7306 4.398673 TCCAAACCGGTTAAAAATATCCCG 59.601 41.667 22.60 0.00 38.39 5.14
6537 7307 4.398673 CCAAACCGGTTAAAAATATCCCGA 59.601 41.667 22.60 0.00 41.08 5.14
6538 7308 5.449451 CCAAACCGGTTAAAAATATCCCGAG 60.449 44.000 22.60 0.00 41.08 4.63
6539 7309 3.208594 ACCGGTTAAAAATATCCCGAGC 58.791 45.455 0.00 0.00 41.08 5.03
6540 7310 3.118149 ACCGGTTAAAAATATCCCGAGCT 60.118 43.478 0.00 0.00 41.08 4.09
6541 7311 4.101430 ACCGGTTAAAAATATCCCGAGCTA 59.899 41.667 0.00 0.00 41.08 3.32
6542 7312 4.450080 CCGGTTAAAAATATCCCGAGCTAC 59.550 45.833 0.00 0.00 41.08 3.58
6543 7313 4.450080 CGGTTAAAAATATCCCGAGCTACC 59.550 45.833 0.00 0.00 41.08 3.18
6544 7314 5.370679 GGTTAAAAATATCCCGAGCTACCA 58.629 41.667 0.00 0.00 0.00 3.25
6545 7315 6.002082 GGTTAAAAATATCCCGAGCTACCAT 58.998 40.000 0.00 0.00 0.00 3.55
6546 7316 6.148976 GGTTAAAAATATCCCGAGCTACCATC 59.851 42.308 0.00 0.00 0.00 3.51
6547 7317 5.568620 AAAAATATCCCGAGCTACCATCT 57.431 39.130 0.00 0.00 0.00 2.90
6548 7318 4.810191 AAATATCCCGAGCTACCATCTC 57.190 45.455 0.00 0.00 0.00 2.75
6549 7319 3.748645 ATATCCCGAGCTACCATCTCT 57.251 47.619 0.00 0.00 0.00 3.10
6550 7320 1.917872 ATCCCGAGCTACCATCTCTC 58.082 55.000 0.00 0.00 0.00 3.20
6551 7321 0.551396 TCCCGAGCTACCATCTCTCA 59.449 55.000 0.00 0.00 0.00 3.27
6552 7322 1.145945 TCCCGAGCTACCATCTCTCAT 59.854 52.381 0.00 0.00 0.00 2.90
6553 7323 1.543802 CCCGAGCTACCATCTCTCATC 59.456 57.143 0.00 0.00 0.00 2.92
6554 7324 1.198867 CCGAGCTACCATCTCTCATCG 59.801 57.143 0.00 0.00 0.00 3.84
6555 7325 1.198867 CGAGCTACCATCTCTCATCGG 59.801 57.143 0.00 0.00 0.00 4.18
6556 7326 2.509569 GAGCTACCATCTCTCATCGGA 58.490 52.381 0.00 0.00 0.00 4.55
6557 7327 3.088532 GAGCTACCATCTCTCATCGGAT 58.911 50.000 0.00 0.00 0.00 4.18
6558 7328 4.265893 GAGCTACCATCTCTCATCGGATA 58.734 47.826 0.00 0.00 0.00 2.59
6559 7329 4.269183 AGCTACCATCTCTCATCGGATAG 58.731 47.826 0.00 0.00 0.00 2.08
6560 7330 4.018870 AGCTACCATCTCTCATCGGATAGA 60.019 45.833 0.00 0.00 31.69 1.98
6561 7331 4.887071 GCTACCATCTCTCATCGGATAGAT 59.113 45.833 0.00 0.00 37.43 1.98
6562 7332 5.008613 GCTACCATCTCTCATCGGATAGATC 59.991 48.000 0.00 0.00 35.47 2.75
6563 7333 4.277476 ACCATCTCTCATCGGATAGATCC 58.723 47.826 0.00 0.00 43.65 3.36
6576 7346 5.948992 GGATAGATCCAGTAACCAAATGC 57.051 43.478 3.54 0.00 46.38 3.56
6577 7347 5.625150 GGATAGATCCAGTAACCAAATGCT 58.375 41.667 3.54 0.00 46.38 3.79
6578 7348 5.703130 GGATAGATCCAGTAACCAAATGCTC 59.297 44.000 3.54 0.00 46.38 4.26
6579 7349 4.851639 AGATCCAGTAACCAAATGCTCT 57.148 40.909 0.00 0.00 0.00 4.09
6580 7350 4.775236 AGATCCAGTAACCAAATGCTCTC 58.225 43.478 0.00 0.00 0.00 3.20
6581 7351 4.472833 AGATCCAGTAACCAAATGCTCTCT 59.527 41.667 0.00 0.00 0.00 3.10
6582 7352 3.942829 TCCAGTAACCAAATGCTCTCTG 58.057 45.455 0.00 0.00 0.00 3.35
6583 7353 3.012518 CCAGTAACCAAATGCTCTCTGG 58.987 50.000 0.00 0.00 35.90 3.86
6584 7354 2.421424 CAGTAACCAAATGCTCTCTGGC 59.579 50.000 0.00 0.00 33.19 4.85
6585 7355 1.745653 GTAACCAAATGCTCTCTGGCC 59.254 52.381 0.00 0.00 33.19 5.36
6586 7356 0.407139 AACCAAATGCTCTCTGGCCT 59.593 50.000 3.32 0.00 33.19 5.19
6587 7357 0.034670 ACCAAATGCTCTCTGGCCTC 60.035 55.000 3.32 0.00 33.19 4.70
6588 7358 0.750911 CCAAATGCTCTCTGGCCTCC 60.751 60.000 3.32 0.00 0.00 4.30
6589 7359 1.094073 CAAATGCTCTCTGGCCTCCG 61.094 60.000 3.32 0.00 0.00 4.63
6590 7360 1.557269 AAATGCTCTCTGGCCTCCGT 61.557 55.000 3.32 0.00 0.00 4.69
6591 7361 1.965754 AATGCTCTCTGGCCTCCGTC 61.966 60.000 3.32 0.00 0.00 4.79
6592 7362 4.200283 GCTCTCTGGCCTCCGTCG 62.200 72.222 3.32 0.00 0.00 5.12
6593 7363 3.522731 CTCTCTGGCCTCCGTCGG 61.523 72.222 4.39 4.39 0.00 4.79
6594 7364 3.997400 CTCTCTGGCCTCCGTCGGA 62.997 68.421 14.54 14.54 0.00 4.55
6603 7373 1.722677 CTCCGTCGGAGTGAGTAGC 59.277 63.158 29.66 0.00 44.25 3.58
6604 7374 2.037913 CTCCGTCGGAGTGAGTAGCG 62.038 65.000 29.66 5.10 44.25 4.26
6605 7375 2.104859 CCGTCGGAGTGAGTAGCGA 61.105 63.158 4.91 0.00 0.00 4.93
6606 7376 1.060622 CGTCGGAGTGAGTAGCGAC 59.939 63.158 0.00 0.00 0.00 5.19
6607 7377 1.428620 GTCGGAGTGAGTAGCGACC 59.571 63.158 0.00 0.00 0.00 4.79
6608 7378 1.002990 TCGGAGTGAGTAGCGACCA 60.003 57.895 0.00 0.00 0.00 4.02
6609 7379 1.136984 CGGAGTGAGTAGCGACCAC 59.863 63.158 9.46 9.46 0.00 4.16
6610 7380 1.583495 CGGAGTGAGTAGCGACCACA 61.583 60.000 16.49 6.02 32.33 4.17
6611 7381 0.818296 GGAGTGAGTAGCGACCACAT 59.182 55.000 16.49 6.07 32.33 3.21
6612 7382 2.022195 GGAGTGAGTAGCGACCACATA 58.978 52.381 16.49 0.00 32.33 2.29
6613 7383 2.223525 GGAGTGAGTAGCGACCACATAC 60.224 54.545 16.49 9.69 32.33 2.39
6614 7384 1.400846 AGTGAGTAGCGACCACATACG 59.599 52.381 16.49 0.00 32.33 3.06
6615 7385 0.736636 TGAGTAGCGACCACATACGG 59.263 55.000 0.00 0.00 0.00 4.02
6616 7386 1.019673 GAGTAGCGACCACATACGGA 58.980 55.000 0.00 0.00 0.00 4.69
6617 7387 1.607628 GAGTAGCGACCACATACGGAT 59.392 52.381 0.00 0.00 0.00 4.18
6618 7388 1.607628 AGTAGCGACCACATACGGATC 59.392 52.381 0.00 0.00 0.00 3.36
6619 7389 1.335810 GTAGCGACCACATACGGATCA 59.664 52.381 0.00 0.00 0.00 2.92
6620 7390 0.821517 AGCGACCACATACGGATCAA 59.178 50.000 0.00 0.00 0.00 2.57
6621 7391 0.928229 GCGACCACATACGGATCAAC 59.072 55.000 0.00 0.00 0.00 3.18
6622 7392 1.197055 CGACCACATACGGATCAACG 58.803 55.000 0.00 0.00 40.31 4.10
6623 7393 0.928229 GACCACATACGGATCAACGC 59.072 55.000 0.00 0.00 37.37 4.84
6624 7394 0.248012 ACCACATACGGATCAACGCA 59.752 50.000 0.00 0.00 37.37 5.24
6625 7395 0.930310 CCACATACGGATCAACGCAG 59.070 55.000 0.00 0.00 37.37 5.18
6627 7397 1.324435 CACATACGGATCAACGCAGTG 59.676 52.381 0.00 0.00 45.00 3.66
6628 7398 0.930310 CATACGGATCAACGCAGTGG 59.070 55.000 0.00 0.00 45.00 4.00
6629 7399 0.810031 ATACGGATCAACGCAGTGGC 60.810 55.000 0.00 0.00 45.00 5.01
6630 7400 1.884075 TACGGATCAACGCAGTGGCT 61.884 55.000 0.00 0.00 45.00 4.75
6631 7401 2.456119 CGGATCAACGCAGTGGCTC 61.456 63.158 0.00 0.00 45.00 4.70
6632 7402 2.456119 GGATCAACGCAGTGGCTCG 61.456 63.158 0.00 0.00 45.00 5.03
6633 7403 2.434884 ATCAACGCAGTGGCTCGG 60.435 61.111 0.00 0.00 45.00 4.63
6634 7404 2.835701 GATCAACGCAGTGGCTCGGA 62.836 60.000 0.00 0.00 45.00 4.55
6635 7405 2.449031 ATCAACGCAGTGGCTCGGAA 62.449 55.000 0.00 0.00 45.00 4.30
6636 7406 2.034879 CAACGCAGTGGCTCGGAAT 61.035 57.895 0.00 0.00 45.00 3.01
6637 7407 0.739462 CAACGCAGTGGCTCGGAATA 60.739 55.000 0.00 0.00 45.00 1.75
6638 7408 0.178068 AACGCAGTGGCTCGGAATAT 59.822 50.000 0.00 0.00 45.00 1.28
6639 7409 1.037493 ACGCAGTGGCTCGGAATATA 58.963 50.000 0.00 0.00 42.51 0.86
6640 7410 1.411246 ACGCAGTGGCTCGGAATATAA 59.589 47.619 0.00 0.00 42.51 0.98
6641 7411 1.792949 CGCAGTGGCTCGGAATATAAC 59.207 52.381 0.00 0.00 38.10 1.89
6642 7412 2.143925 GCAGTGGCTCGGAATATAACC 58.856 52.381 0.00 0.00 36.96 2.85
6643 7413 2.224305 GCAGTGGCTCGGAATATAACCT 60.224 50.000 0.00 0.00 36.96 3.50
6644 7414 3.393800 CAGTGGCTCGGAATATAACCTG 58.606 50.000 0.00 0.00 0.00 4.00
6645 7415 2.143925 GTGGCTCGGAATATAACCTGC 58.856 52.381 0.00 0.00 0.00 4.85
6646 7416 1.765904 TGGCTCGGAATATAACCTGCA 59.234 47.619 0.00 0.00 0.00 4.41
6647 7417 2.171659 TGGCTCGGAATATAACCTGCAA 59.828 45.455 0.00 0.00 0.00 4.08
6648 7418 3.211045 GGCTCGGAATATAACCTGCAAA 58.789 45.455 0.00 0.00 0.00 3.68
6649 7419 3.630312 GGCTCGGAATATAACCTGCAAAA 59.370 43.478 0.00 0.00 0.00 2.44
6650 7420 4.097286 GGCTCGGAATATAACCTGCAAAAA 59.903 41.667 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.095347 GCATCTCCACTCGTCCCCC 62.095 68.421 0.00 0.00 0.00 5.40
2 3 2.022240 GAGCATCTCCACTCGTCCCC 62.022 65.000 0.00 0.00 0.00 4.81
3 4 1.439644 GAGCATCTCCACTCGTCCC 59.560 63.158 0.00 0.00 0.00 4.46
19 20 2.854777 CGGAAAGTCGTCATGCTAAGAG 59.145 50.000 0.00 0.00 0.00 2.85
20 21 2.416836 CCGGAAAGTCGTCATGCTAAGA 60.417 50.000 0.00 0.00 0.00 2.10
26 27 1.459592 GACAACCGGAAAGTCGTCATG 59.540 52.381 9.46 0.00 0.00 3.07
55 56 0.608035 CTGGAGCCGGGCAAAACTTA 60.608 55.000 23.09 0.00 0.00 2.24
122 123 4.065281 ACCTAGCGGCGACCACAC 62.065 66.667 12.98 0.00 0.00 3.82
126 127 1.174712 TATACCACCTAGCGGCGACC 61.175 60.000 12.98 0.00 0.00 4.79
131 132 4.382040 CCAGATTCATATACCACCTAGCGG 60.382 50.000 0.00 0.00 0.00 5.52
185 188 9.708092 GTACAGACCATATTAGAAATAACCCTC 57.292 37.037 0.00 0.00 0.00 4.30
200 203 8.431222 TCATCAATCATGATTGTACAGACCATA 58.569 33.333 35.74 20.05 43.89 2.74
202 205 6.652053 TCATCAATCATGATTGTACAGACCA 58.348 36.000 35.74 21.22 43.89 4.02
259 267 8.517056 TCCCATCTTAAAAACGTTTATCTTTCC 58.483 33.333 15.03 0.00 0.00 3.13
373 381 1.028905 TTTTTGGCCAGGACGAACAG 58.971 50.000 5.11 0.00 0.00 3.16
1165 1174 0.454196 AGCAAACGACACACAAACCC 59.546 50.000 0.00 0.00 0.00 4.11
1430 1439 2.660064 GGAGAAGAGAAGCGGCCCA 61.660 63.158 0.00 0.00 0.00 5.36
1461 1470 0.913924 TGAAGCAGAGCATGATGGGA 59.086 50.000 0.00 0.00 0.00 4.37
1624 1635 0.179124 GCTCGTGACAGGCTCCTAAG 60.179 60.000 0.00 0.00 0.00 2.18
1739 1751 5.163663 GGCCTTCGAATTATCAACATCAACA 60.164 40.000 0.00 0.00 0.00 3.33
2056 2069 5.578005 TGAGGACTAGTTTCATTACCTCG 57.422 43.478 15.85 0.00 43.39 4.63
2193 2206 8.766994 ATACTGTAAGCAATCCACCAAATAAT 57.233 30.769 0.00 0.00 37.60 1.28
2439 2452 2.082231 CACTCTTTCTCACCCTGCATG 58.918 52.381 0.00 0.00 0.00 4.06
2517 2534 0.329261 CATGTTCTGGCCCTTCTGGA 59.671 55.000 0.00 0.00 35.39 3.86
2904 2922 3.006940 TCCCGATACATTGTGAGTTTGC 58.993 45.455 0.00 0.00 0.00 3.68
2922 2940 3.146066 TCTTGTACAACACAATGCTCCC 58.854 45.455 3.59 0.00 45.96 4.30
2939 2957 8.885494 TTTGGGTCATTTTTGTAATCTTCTTG 57.115 30.769 0.00 0.00 0.00 3.02
3200 3246 0.961019 TTGTCACTTGAAGGCCATGC 59.039 50.000 5.01 0.00 0.00 4.06
3244 3290 2.441532 CATTCAGGCTGCCCAGGG 60.442 66.667 16.57 0.00 0.00 4.45
3304 3350 9.561069 AGGTATTGAGGATGATTGTATTTACAC 57.439 33.333 0.00 0.00 35.64 2.90
3382 3428 3.851458 TGTATAGAGCTACTCACCGGA 57.149 47.619 9.46 0.00 32.06 5.14
3483 3530 6.373495 TCAATCTGATCAAGGACAACATCAAG 59.627 38.462 0.00 0.00 0.00 3.02
3578 3625 7.333528 TCCCTGACTATACAATTTGCAATTC 57.666 36.000 0.00 0.00 0.00 2.17
3591 3640 9.379770 TGAATGATCATTACTTCCCTGACTATA 57.620 33.333 20.75 0.00 0.00 1.31
3597 3646 7.201767 GGAAACTGAATGATCATTACTTCCCTG 60.202 40.741 20.75 12.84 34.37 4.45
3607 3658 9.685276 TGTAATAACTGGAAACTGAATGATCAT 57.315 29.630 1.18 1.18 34.37 2.45
3644 3696 5.758296 CACTGCTTTCAAGTCCTACAGTAAA 59.242 40.000 0.00 0.00 35.27 2.01
3664 3716 2.169352 AGAATACCACCTAGCTGCACTG 59.831 50.000 1.02 0.00 0.00 3.66
3873 3925 3.753272 GCCTTTGCTTCACATTCTAGTCA 59.247 43.478 0.00 0.00 33.53 3.41
3957 4009 1.464997 GAAGGTCAATGGACGCAGAAC 59.535 52.381 0.00 0.00 45.28 3.01
4025 4077 3.236816 GCATTTGGTTGACGATTCACAG 58.763 45.455 0.00 0.00 0.00 3.66
4234 4286 4.768130 TGCAGCGAGTATCCTATCTTAC 57.232 45.455 0.00 0.00 0.00 2.34
4292 4344 6.303839 AGTTATGCAAAAACCCAGAAGAGTA 58.696 36.000 10.70 0.00 0.00 2.59
4468 4520 5.392811 GCCTCCATCTTCAAAGAATTGACAG 60.393 44.000 0.00 0.00 45.01 3.51
4469 4521 4.460382 GCCTCCATCTTCAAAGAATTGACA 59.540 41.667 0.00 0.00 45.01 3.58
4470 4522 4.704057 AGCCTCCATCTTCAAAGAATTGAC 59.296 41.667 0.00 0.00 45.01 3.18
4471 4523 4.927049 AGCCTCCATCTTCAAAGAATTGA 58.073 39.130 0.00 0.00 43.70 2.57
4472 4524 5.656213 AAGCCTCCATCTTCAAAGAATTG 57.344 39.130 0.00 0.00 38.77 2.32
4559 4614 4.741928 AGGAAGTACCCACCAGAAAAAT 57.258 40.909 0.00 0.00 40.05 1.82
4921 4997 6.210584 TGTCTGTCAACTGTTGATCAGGTATA 59.789 38.462 30.32 19.55 42.94 1.47
4987 5063 3.244976 CCATTGCGGCTAAGACAAAAAG 58.755 45.455 0.00 0.00 0.00 2.27
5023 5692 7.754924 CGATGTGCCAGAAATTAAAGTTAACAT 59.245 33.333 8.61 0.00 0.00 2.71
5041 5710 1.330521 ACGAACATATTGCGATGTGCC 59.669 47.619 10.42 2.73 45.60 5.01
5172 5936 9.486497 TTGTGTATTTGCATGTTTTGTCATAAT 57.514 25.926 0.00 0.00 0.00 1.28
5175 5939 7.208777 TCTTGTGTATTTGCATGTTTTGTCAT 58.791 30.769 0.00 0.00 0.00 3.06
5208 5972 3.004024 GCAATGTGCAGTGCCATATAC 57.996 47.619 13.72 3.95 45.58 1.47
5312 6080 0.675083 TGCAAAACCCATGCTGTGAG 59.325 50.000 0.00 0.00 44.14 3.51
5573 6341 2.871022 GAGAAGCATGTGTGGAGCATAG 59.129 50.000 0.00 0.00 0.00 2.23
5929 6698 2.751806 CTCCCTCTTCCAATTCAGCAAC 59.248 50.000 0.00 0.00 0.00 4.17
6049 6818 3.016736 CAAGATTGCCGAACCCAATAGT 58.983 45.455 0.00 0.00 33.34 2.12
6186 6956 2.092968 TGATTCCATTGAGGGTTCGAGG 60.093 50.000 0.00 0.00 38.24 4.63
6250 7020 4.950050 ACCTACTGACAGACTCAAACTTG 58.050 43.478 10.08 0.00 0.00 3.16
6259 7029 3.573110 ACTGGTGTTACCTACTGACAGAC 59.427 47.826 10.08 0.00 39.58 3.51
6283 7053 3.567164 ACAAAGAACAGAATGAGCCACAG 59.433 43.478 0.00 0.00 39.69 3.66
6330 7100 4.399395 TTCTGCTGCAGAGGCCGG 62.399 66.667 28.91 4.56 41.75 6.13
6331 7101 3.123620 GTTCTGCTGCAGAGGCCG 61.124 66.667 28.91 5.23 41.75 6.13
6332 7102 2.866085 ATCGTTCTGCTGCAGAGGCC 62.866 60.000 28.91 20.04 41.75 5.19
6333 7103 1.449246 ATCGTTCTGCTGCAGAGGC 60.449 57.895 28.91 23.62 41.75 4.70
6334 7104 1.703438 GCATCGTTCTGCTGCAGAGG 61.703 60.000 28.91 24.12 41.75 3.69
6335 7105 1.017701 TGCATCGTTCTGCTGCAGAG 61.018 55.000 28.91 19.97 44.28 3.35
6336 7106 1.004679 TGCATCGTTCTGCTGCAGA 60.005 52.632 27.35 27.35 44.28 4.26
6337 7107 3.569902 TGCATCGTTCTGCTGCAG 58.430 55.556 23.31 23.31 44.28 4.41
6339 7109 0.042708 CGTATGCATCGTTCTGCTGC 60.043 55.000 0.19 0.00 42.75 5.25
6340 7110 0.578683 CCGTATGCATCGTTCTGCTG 59.421 55.000 0.19 0.00 42.75 4.41
6341 7111 1.154205 GCCGTATGCATCGTTCTGCT 61.154 55.000 0.19 0.00 42.75 4.24
6342 7112 1.276844 GCCGTATGCATCGTTCTGC 59.723 57.895 0.19 2.42 42.62 4.26
6343 7113 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
6344 7114 0.106708 ATGGCCGTATGCATCGTTCT 59.893 50.000 0.19 0.00 43.89 3.01
6345 7115 0.235665 CATGGCCGTATGCATCGTTC 59.764 55.000 0.19 2.49 43.89 3.95
6346 7116 0.179059 TCATGGCCGTATGCATCGTT 60.179 50.000 0.19 0.00 43.89 3.85
6347 7117 0.035317 ATCATGGCCGTATGCATCGT 59.965 50.000 0.19 0.00 43.89 3.73
6348 7118 1.159285 AATCATGGCCGTATGCATCG 58.841 50.000 0.19 7.03 43.89 3.84
6349 7119 4.970662 AATAATCATGGCCGTATGCATC 57.029 40.909 0.19 0.00 43.89 3.91
6350 7120 8.518430 TTATTAATAATCATGGCCGTATGCAT 57.482 30.769 3.79 3.79 43.89 3.96
6351 7121 7.415095 GCTTATTAATAATCATGGCCGTATGCA 60.415 37.037 8.34 0.00 43.89 3.96
6352 7122 6.912591 GCTTATTAATAATCATGGCCGTATGC 59.087 38.462 8.34 0.85 40.16 3.14
6353 7123 7.984391 TGCTTATTAATAATCATGGCCGTATG 58.016 34.615 8.34 0.00 0.00 2.39
6354 7124 8.574251 TTGCTTATTAATAATCATGGCCGTAT 57.426 30.769 11.47 0.00 0.00 3.06
6355 7125 7.987750 TTGCTTATTAATAATCATGGCCGTA 57.012 32.000 11.47 0.00 0.00 4.02
6356 7126 6.892658 TTGCTTATTAATAATCATGGCCGT 57.107 33.333 11.47 0.00 0.00 5.68
6357 7127 7.329226 CCTTTTGCTTATTAATAATCATGGCCG 59.671 37.037 11.47 0.00 0.00 6.13
6358 7128 8.150296 ACCTTTTGCTTATTAATAATCATGGCC 58.850 33.333 11.47 0.00 0.00 5.36
6359 7129 9.196552 GACCTTTTGCTTATTAATAATCATGGC 57.803 33.333 11.47 9.97 0.00 4.40
6369 7139 9.073475 ACATGTGTAAGACCTTTTGCTTATTAA 57.927 29.630 0.00 0.00 0.00 1.40
6370 7140 8.630054 ACATGTGTAAGACCTTTTGCTTATTA 57.370 30.769 0.00 0.00 0.00 0.98
6371 7141 7.448469 AGACATGTGTAAGACCTTTTGCTTATT 59.552 33.333 1.15 0.00 0.00 1.40
6372 7142 6.942576 AGACATGTGTAAGACCTTTTGCTTAT 59.057 34.615 1.15 0.00 0.00 1.73
6373 7143 6.296026 AGACATGTGTAAGACCTTTTGCTTA 58.704 36.000 1.15 0.00 0.00 3.09
6374 7144 5.133221 AGACATGTGTAAGACCTTTTGCTT 58.867 37.500 1.15 0.00 0.00 3.91
6375 7145 4.718961 AGACATGTGTAAGACCTTTTGCT 58.281 39.130 1.15 0.00 0.00 3.91
6376 7146 5.215160 CAAGACATGTGTAAGACCTTTTGC 58.785 41.667 1.15 0.00 0.00 3.68
6377 7147 6.377327 ACAAGACATGTGTAAGACCTTTTG 57.623 37.500 1.15 0.00 41.93 2.44
6378 7148 6.377146 ACAACAAGACATGTGTAAGACCTTTT 59.623 34.615 1.15 0.00 42.99 2.27
6379 7149 5.885912 ACAACAAGACATGTGTAAGACCTTT 59.114 36.000 1.15 0.00 42.99 3.11
6380 7150 5.437060 ACAACAAGACATGTGTAAGACCTT 58.563 37.500 1.15 0.00 42.99 3.50
6381 7151 5.036117 ACAACAAGACATGTGTAAGACCT 57.964 39.130 1.15 0.00 42.99 3.85
6382 7152 5.057149 AGACAACAAGACATGTGTAAGACC 58.943 41.667 1.15 0.00 42.99 3.85
6383 7153 5.753438 TGAGACAACAAGACATGTGTAAGAC 59.247 40.000 1.15 0.00 42.99 3.01
6384 7154 5.912892 TGAGACAACAAGACATGTGTAAGA 58.087 37.500 1.15 0.00 42.99 2.10
6385 7155 6.603237 TTGAGACAACAAGACATGTGTAAG 57.397 37.500 1.15 0.00 42.99 2.34
6386 7156 6.765512 TGATTGAGACAACAAGACATGTGTAA 59.234 34.615 1.15 0.00 42.99 2.41
6387 7157 6.287525 TGATTGAGACAACAAGACATGTGTA 58.712 36.000 1.15 0.00 42.99 2.90
6388 7158 5.125356 TGATTGAGACAACAAGACATGTGT 58.875 37.500 1.15 0.00 42.99 3.72
6389 7159 5.678132 TGATTGAGACAACAAGACATGTG 57.322 39.130 1.15 0.00 42.99 3.21
6390 7160 5.240183 CCTTGATTGAGACAACAAGACATGT 59.760 40.000 18.43 0.00 46.82 3.21
6391 7161 5.471116 TCCTTGATTGAGACAACAAGACATG 59.529 40.000 18.43 0.00 41.16 3.21
6392 7162 5.624159 TCCTTGATTGAGACAACAAGACAT 58.376 37.500 18.43 0.00 41.16 3.06
6393 7163 5.034852 TCCTTGATTGAGACAACAAGACA 57.965 39.130 18.43 0.00 41.16 3.41
6394 7164 5.296780 TGTTCCTTGATTGAGACAACAAGAC 59.703 40.000 18.43 13.53 41.16 3.01
6395 7165 5.436175 TGTTCCTTGATTGAGACAACAAGA 58.564 37.500 18.43 9.25 41.16 3.02
6396 7166 5.756195 TGTTCCTTGATTGAGACAACAAG 57.244 39.130 0.00 0.00 39.24 3.16
6397 7167 6.522625 TTTGTTCCTTGATTGAGACAACAA 57.477 33.333 0.00 0.00 32.29 2.83
6398 7168 6.405731 CCTTTTGTTCCTTGATTGAGACAACA 60.406 38.462 0.00 0.00 0.00 3.33
6399 7169 5.979517 CCTTTTGTTCCTTGATTGAGACAAC 59.020 40.000 0.00 0.00 0.00 3.32
6400 7170 5.451798 GCCTTTTGTTCCTTGATTGAGACAA 60.452 40.000 0.00 0.00 0.00 3.18
6401 7171 4.037923 GCCTTTTGTTCCTTGATTGAGACA 59.962 41.667 0.00 0.00 0.00 3.41
6402 7172 4.279420 AGCCTTTTGTTCCTTGATTGAGAC 59.721 41.667 0.00 0.00 0.00 3.36
6403 7173 4.473444 AGCCTTTTGTTCCTTGATTGAGA 58.527 39.130 0.00 0.00 0.00 3.27
6404 7174 4.279169 TGAGCCTTTTGTTCCTTGATTGAG 59.721 41.667 0.00 0.00 0.00 3.02
6405 7175 4.037923 GTGAGCCTTTTGTTCCTTGATTGA 59.962 41.667 0.00 0.00 0.00 2.57
6406 7176 4.202141 TGTGAGCCTTTTGTTCCTTGATTG 60.202 41.667 0.00 0.00 0.00 2.67
6407 7177 3.960102 TGTGAGCCTTTTGTTCCTTGATT 59.040 39.130 0.00 0.00 0.00 2.57
6408 7178 3.565307 TGTGAGCCTTTTGTTCCTTGAT 58.435 40.909 0.00 0.00 0.00 2.57
6409 7179 3.011566 TGTGAGCCTTTTGTTCCTTGA 57.988 42.857 0.00 0.00 0.00 3.02
6410 7180 3.799281 TTGTGAGCCTTTTGTTCCTTG 57.201 42.857 0.00 0.00 0.00 3.61
6411 7181 4.023291 TCTTTGTGAGCCTTTTGTTCCTT 58.977 39.130 0.00 0.00 0.00 3.36
6412 7182 3.631250 TCTTTGTGAGCCTTTTGTTCCT 58.369 40.909 0.00 0.00 0.00 3.36
6413 7183 3.969899 CTCTTTGTGAGCCTTTTGTTCC 58.030 45.455 0.00 0.00 35.84 3.62
6424 7194 9.657121 CTCTTTTACTTTTTAGCTCTTTGTGAG 57.343 33.333 0.00 0.00 45.33 3.51
6425 7195 9.391006 TCTCTTTTACTTTTTAGCTCTTTGTGA 57.609 29.630 0.00 0.00 0.00 3.58
6428 7198 9.175060 GCTTCTCTTTTACTTTTTAGCTCTTTG 57.825 33.333 0.00 0.00 0.00 2.77
6429 7199 8.353684 GGCTTCTCTTTTACTTTTTAGCTCTTT 58.646 33.333 0.00 0.00 0.00 2.52
6430 7200 7.502561 TGGCTTCTCTTTTACTTTTTAGCTCTT 59.497 33.333 0.00 0.00 0.00 2.85
6431 7201 6.998673 TGGCTTCTCTTTTACTTTTTAGCTCT 59.001 34.615 0.00 0.00 0.00 4.09
6432 7202 7.078851 GTGGCTTCTCTTTTACTTTTTAGCTC 58.921 38.462 0.00 0.00 0.00 4.09
6433 7203 6.546034 TGTGGCTTCTCTTTTACTTTTTAGCT 59.454 34.615 0.00 0.00 0.00 3.32
6434 7204 6.735130 TGTGGCTTCTCTTTTACTTTTTAGC 58.265 36.000 0.00 0.00 0.00 3.09
6435 7205 7.648112 GGTTGTGGCTTCTCTTTTACTTTTTAG 59.352 37.037 0.00 0.00 0.00 1.85
6436 7206 7.485810 GGTTGTGGCTTCTCTTTTACTTTTTA 58.514 34.615 0.00 0.00 0.00 1.52
6437 7207 6.338146 GGTTGTGGCTTCTCTTTTACTTTTT 58.662 36.000 0.00 0.00 0.00 1.94
6438 7208 5.449999 CGGTTGTGGCTTCTCTTTTACTTTT 60.450 40.000 0.00 0.00 0.00 2.27
6439 7209 4.036380 CGGTTGTGGCTTCTCTTTTACTTT 59.964 41.667 0.00 0.00 0.00 2.66
6440 7210 3.564225 CGGTTGTGGCTTCTCTTTTACTT 59.436 43.478 0.00 0.00 0.00 2.24
6441 7211 3.139077 CGGTTGTGGCTTCTCTTTTACT 58.861 45.455 0.00 0.00 0.00 2.24
6442 7212 2.225727 CCGGTTGTGGCTTCTCTTTTAC 59.774 50.000 0.00 0.00 0.00 2.01
6443 7213 2.500229 CCGGTTGTGGCTTCTCTTTTA 58.500 47.619 0.00 0.00 0.00 1.52
6444 7214 1.318576 CCGGTTGTGGCTTCTCTTTT 58.681 50.000 0.00 0.00 0.00 2.27
6445 7215 3.021451 CCGGTTGTGGCTTCTCTTT 57.979 52.632 0.00 0.00 0.00 2.52
6446 7216 4.800554 CCGGTTGTGGCTTCTCTT 57.199 55.556 0.00 0.00 0.00 2.85
6454 7224 2.303549 TTTTTGCCAGCCGGTTGTGG 62.304 55.000 17.69 15.43 36.85 4.17
6455 7225 1.142748 TTTTTGCCAGCCGGTTGTG 59.857 52.632 17.69 9.73 33.28 3.33
6456 7226 1.142965 GTTTTTGCCAGCCGGTTGT 59.857 52.632 17.69 0.00 33.28 3.32
6457 7227 1.948635 CGTTTTTGCCAGCCGGTTG 60.949 57.895 11.98 11.98 33.28 3.77
6458 7228 1.460273 ATCGTTTTTGCCAGCCGGTT 61.460 50.000 1.90 0.00 33.28 4.44
6459 7229 0.606944 TATCGTTTTTGCCAGCCGGT 60.607 50.000 1.90 0.00 33.28 5.28
6460 7230 0.098728 CTATCGTTTTTGCCAGCCGG 59.901 55.000 0.00 0.00 0.00 6.13
6461 7231 0.098728 CCTATCGTTTTTGCCAGCCG 59.901 55.000 0.00 0.00 0.00 5.52
6462 7232 1.459450 TCCTATCGTTTTTGCCAGCC 58.541 50.000 0.00 0.00 0.00 4.85
6463 7233 2.488153 AGTTCCTATCGTTTTTGCCAGC 59.512 45.455 0.00 0.00 0.00 4.85
6464 7234 5.873179 TTAGTTCCTATCGTTTTTGCCAG 57.127 39.130 0.00 0.00 0.00 4.85
6465 7235 6.636562 TTTTAGTTCCTATCGTTTTTGCCA 57.363 33.333 0.00 0.00 0.00 4.92
6466 7236 5.571741 GCTTTTAGTTCCTATCGTTTTTGCC 59.428 40.000 0.00 0.00 0.00 4.52
6467 7237 5.571741 GGCTTTTAGTTCCTATCGTTTTTGC 59.428 40.000 0.00 0.00 0.00 3.68
6468 7238 6.909909 AGGCTTTTAGTTCCTATCGTTTTTG 58.090 36.000 0.00 0.00 0.00 2.44
6469 7239 8.803397 ATAGGCTTTTAGTTCCTATCGTTTTT 57.197 30.769 0.00 0.00 38.45 1.94
6470 7240 8.434733 GATAGGCTTTTAGTTCCTATCGTTTT 57.565 34.615 10.61 0.00 44.93 2.43
6477 7247 9.664777 TGTAATAGGATAGGCTTTTAGTTCCTA 57.335 33.333 0.00 0.60 39.47 2.94
6478 7248 8.562949 TGTAATAGGATAGGCTTTTAGTTCCT 57.437 34.615 0.00 0.00 37.38 3.36
6479 7249 9.220767 CATGTAATAGGATAGGCTTTTAGTTCC 57.779 37.037 0.00 0.00 0.00 3.62
6480 7250 9.998106 TCATGTAATAGGATAGGCTTTTAGTTC 57.002 33.333 0.00 0.00 0.00 3.01
6481 7251 9.780186 GTCATGTAATAGGATAGGCTTTTAGTT 57.220 33.333 0.00 0.00 0.00 2.24
6482 7252 8.376270 GGTCATGTAATAGGATAGGCTTTTAGT 58.624 37.037 0.00 0.00 0.00 2.24
6483 7253 7.545965 CGGTCATGTAATAGGATAGGCTTTTAG 59.454 40.741 0.00 0.00 0.00 1.85
6484 7254 7.383687 CGGTCATGTAATAGGATAGGCTTTTA 58.616 38.462 0.00 0.00 0.00 1.52
6485 7255 6.231211 CGGTCATGTAATAGGATAGGCTTTT 58.769 40.000 0.00 0.00 0.00 2.27
6486 7256 5.794894 CGGTCATGTAATAGGATAGGCTTT 58.205 41.667 0.00 0.00 0.00 3.51
6487 7257 4.322801 GCGGTCATGTAATAGGATAGGCTT 60.323 45.833 0.00 0.00 0.00 4.35
6488 7258 3.195825 GCGGTCATGTAATAGGATAGGCT 59.804 47.826 0.00 0.00 0.00 4.58
6489 7259 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
6490 7260 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
6491 7261 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
6492 7262 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
6493 7263 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
6494 7264 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
6495 7265 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
6496 7266 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
6497 7267 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
6498 7268 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
6499 7269 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
6500 7270 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
6501 7271 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
6502 7272 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
6503 7273 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
6504 7274 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
6505 7275 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
6506 7276 2.127027 TAACCGGTTTGGATGGCGGT 62.127 55.000 27.64 0.00 42.00 5.68
6507 7277 0.961358 TTAACCGGTTTGGATGGCGG 60.961 55.000 27.64 0.00 42.00 6.13
6508 7278 0.882474 TTTAACCGGTTTGGATGGCG 59.118 50.000 27.64 0.00 42.00 5.69
6509 7279 3.388345 TTTTTAACCGGTTTGGATGGC 57.612 42.857 27.64 0.00 42.00 4.40
6510 7280 6.277605 GGATATTTTTAACCGGTTTGGATGG 58.722 40.000 27.64 0.00 42.00 3.51
6511 7281 6.277605 GGGATATTTTTAACCGGTTTGGATG 58.722 40.000 27.64 0.00 42.00 3.51
6512 7282 5.068067 CGGGATATTTTTAACCGGTTTGGAT 59.932 40.000 27.64 16.20 42.00 3.41
6513 7283 4.398673 CGGGATATTTTTAACCGGTTTGGA 59.601 41.667 27.64 9.45 42.00 3.53
6514 7284 4.398673 TCGGGATATTTTTAACCGGTTTGG 59.601 41.667 27.64 1.69 44.36 3.28
6515 7285 5.564048 TCGGGATATTTTTAACCGGTTTG 57.436 39.130 27.64 1.61 44.36 2.93
6516 7286 4.096833 GCTCGGGATATTTTTAACCGGTTT 59.903 41.667 27.64 9.68 44.36 3.27
6517 7287 3.628942 GCTCGGGATATTTTTAACCGGTT 59.371 43.478 25.64 25.64 44.36 4.44
6518 7288 3.118149 AGCTCGGGATATTTTTAACCGGT 60.118 43.478 0.00 0.00 44.36 5.28
6519 7289 3.473625 AGCTCGGGATATTTTTAACCGG 58.526 45.455 0.00 0.00 44.36 5.28
6520 7290 4.450080 GGTAGCTCGGGATATTTTTAACCG 59.550 45.833 0.00 0.00 45.52 4.44
6521 7291 5.370679 TGGTAGCTCGGGATATTTTTAACC 58.629 41.667 0.00 0.00 0.00 2.85
6522 7292 6.935208 AGATGGTAGCTCGGGATATTTTTAAC 59.065 38.462 0.00 0.00 0.00 2.01
6523 7293 7.016268 AGAGATGGTAGCTCGGGATATTTTTAA 59.984 37.037 0.00 0.00 37.46 1.52
6524 7294 6.497259 AGAGATGGTAGCTCGGGATATTTTTA 59.503 38.462 0.00 0.00 37.46 1.52
6525 7295 5.308237 AGAGATGGTAGCTCGGGATATTTTT 59.692 40.000 0.00 0.00 37.46 1.94
6526 7296 4.841246 AGAGATGGTAGCTCGGGATATTTT 59.159 41.667 0.00 0.00 37.46 1.82
6527 7297 4.421131 AGAGATGGTAGCTCGGGATATTT 58.579 43.478 0.00 0.00 37.46 1.40
6528 7298 4.020543 GAGAGATGGTAGCTCGGGATATT 58.979 47.826 0.00 0.00 37.46 1.28
6529 7299 3.010696 TGAGAGATGGTAGCTCGGGATAT 59.989 47.826 0.00 0.00 37.46 1.63
6530 7300 2.375509 TGAGAGATGGTAGCTCGGGATA 59.624 50.000 0.00 0.00 37.46 2.59
6531 7301 1.145945 TGAGAGATGGTAGCTCGGGAT 59.854 52.381 0.00 0.00 37.46 3.85
6532 7302 0.551396 TGAGAGATGGTAGCTCGGGA 59.449 55.000 0.00 0.00 37.46 5.14
6533 7303 1.543802 GATGAGAGATGGTAGCTCGGG 59.456 57.143 0.00 0.00 37.46 5.14
6534 7304 1.198867 CGATGAGAGATGGTAGCTCGG 59.801 57.143 0.00 0.00 37.46 4.63
6535 7305 1.198867 CCGATGAGAGATGGTAGCTCG 59.801 57.143 0.00 0.00 37.46 5.03
6536 7306 2.509569 TCCGATGAGAGATGGTAGCTC 58.490 52.381 0.00 0.00 0.00 4.09
6537 7307 2.666272 TCCGATGAGAGATGGTAGCT 57.334 50.000 0.00 0.00 0.00 3.32
6538 7308 4.265893 TCTATCCGATGAGAGATGGTAGC 58.734 47.826 0.00 0.00 34.01 3.58
6539 7309 5.530915 GGATCTATCCGATGAGAGATGGTAG 59.469 48.000 4.57 0.00 46.79 3.18
6540 7310 5.044846 TGGATCTATCCGATGAGAGATGGTA 60.045 44.000 4.57 0.00 46.79 3.25
6541 7311 4.264128 TGGATCTATCCGATGAGAGATGGT 60.264 45.833 4.57 0.00 46.79 3.55
6542 7312 4.276642 TGGATCTATCCGATGAGAGATGG 58.723 47.826 4.57 0.00 46.79 3.51
6543 7313 4.949238 ACTGGATCTATCCGATGAGAGATG 59.051 45.833 4.57 0.00 46.79 2.90
6555 7325 6.529220 AGAGCATTTGGTTACTGGATCTATC 58.471 40.000 0.00 0.00 0.00 2.08
6556 7326 6.328672 AGAGAGCATTTGGTTACTGGATCTAT 59.671 38.462 0.00 0.00 0.00 1.98
6557 7327 5.663106 AGAGAGCATTTGGTTACTGGATCTA 59.337 40.000 0.00 0.00 0.00 1.98
6558 7328 4.472833 AGAGAGCATTTGGTTACTGGATCT 59.527 41.667 0.00 0.00 0.00 2.75
6559 7329 4.574013 CAGAGAGCATTTGGTTACTGGATC 59.426 45.833 0.00 0.00 0.00 3.36
6560 7330 4.521146 CAGAGAGCATTTGGTTACTGGAT 58.479 43.478 0.00 0.00 0.00 3.41
6561 7331 3.307691 CCAGAGAGCATTTGGTTACTGGA 60.308 47.826 20.82 0.00 44.04 3.86
6562 7332 3.012518 CCAGAGAGCATTTGGTTACTGG 58.987 50.000 15.88 15.88 40.04 4.00
6563 7333 2.421424 GCCAGAGAGCATTTGGTTACTG 59.579 50.000 1.28 0.00 34.43 2.74
6564 7334 2.619074 GGCCAGAGAGCATTTGGTTACT 60.619 50.000 0.00 0.00 34.43 2.24
6565 7335 1.745653 GGCCAGAGAGCATTTGGTTAC 59.254 52.381 0.00 0.00 34.43 2.50
6566 7336 1.635487 AGGCCAGAGAGCATTTGGTTA 59.365 47.619 5.01 0.00 34.43 2.85
6567 7337 0.407139 AGGCCAGAGAGCATTTGGTT 59.593 50.000 5.01 0.00 34.43 3.67
6568 7338 0.034670 GAGGCCAGAGAGCATTTGGT 60.035 55.000 5.01 0.00 34.43 3.67
6569 7339 0.750911 GGAGGCCAGAGAGCATTTGG 60.751 60.000 5.01 0.00 35.06 3.28
6570 7340 1.094073 CGGAGGCCAGAGAGCATTTG 61.094 60.000 5.01 0.00 0.00 2.32
6571 7341 1.222936 CGGAGGCCAGAGAGCATTT 59.777 57.895 5.01 0.00 0.00 2.32
6572 7342 1.965754 GACGGAGGCCAGAGAGCATT 61.966 60.000 5.01 0.00 0.00 3.56
6573 7343 2.364842 ACGGAGGCCAGAGAGCAT 60.365 61.111 5.01 0.00 0.00 3.79
6574 7344 3.071206 GACGGAGGCCAGAGAGCA 61.071 66.667 5.01 0.00 0.00 4.26
6575 7345 4.200283 CGACGGAGGCCAGAGAGC 62.200 72.222 5.01 0.00 0.00 4.09
6576 7346 3.522731 CCGACGGAGGCCAGAGAG 61.523 72.222 8.64 0.00 0.00 3.20
6577 7347 3.997400 CTCCGACGGAGGCCAGAGA 62.997 68.421 32.26 0.78 45.43 3.10
6578 7348 3.522731 CTCCGACGGAGGCCAGAG 61.523 72.222 32.26 9.25 45.43 3.35
6586 7356 2.104859 CGCTACTCACTCCGACGGA 61.105 63.158 17.28 17.28 0.00 4.69
6587 7357 2.104859 TCGCTACTCACTCCGACGG 61.105 63.158 7.84 7.84 0.00 4.79
6588 7358 1.060622 GTCGCTACTCACTCCGACG 59.939 63.158 0.00 0.00 40.27 5.12
6589 7359 1.303799 TGGTCGCTACTCACTCCGAC 61.304 60.000 3.68 3.68 46.60 4.79
6590 7360 1.002990 TGGTCGCTACTCACTCCGA 60.003 57.895 0.00 0.00 0.00 4.55
6591 7361 1.136984 GTGGTCGCTACTCACTCCG 59.863 63.158 3.71 0.00 0.00 4.63
6592 7362 0.818296 ATGTGGTCGCTACTCACTCC 59.182 55.000 10.01 0.00 31.73 3.85
6593 7363 2.539142 CGTATGTGGTCGCTACTCACTC 60.539 54.545 10.01 3.07 31.73 3.51
6594 7364 1.400846 CGTATGTGGTCGCTACTCACT 59.599 52.381 10.01 1.88 31.73 3.41
6595 7365 1.533338 CCGTATGTGGTCGCTACTCAC 60.533 57.143 3.91 3.91 0.00 3.51
6596 7366 0.736636 CCGTATGTGGTCGCTACTCA 59.263 55.000 0.00 0.00 0.00 3.41
6597 7367 1.019673 TCCGTATGTGGTCGCTACTC 58.980 55.000 0.00 0.00 0.00 2.59
6598 7368 1.607628 GATCCGTATGTGGTCGCTACT 59.392 52.381 0.00 0.00 0.00 2.57
6599 7369 1.335810 TGATCCGTATGTGGTCGCTAC 59.664 52.381 0.00 0.00 0.00 3.58
6600 7370 1.682740 TGATCCGTATGTGGTCGCTA 58.317 50.000 0.00 0.00 0.00 4.26
6601 7371 0.821517 TTGATCCGTATGTGGTCGCT 59.178 50.000 0.00 0.00 0.00 4.93
6602 7372 0.928229 GTTGATCCGTATGTGGTCGC 59.072 55.000 0.00 0.00 0.00 5.19
6603 7373 1.197055 CGTTGATCCGTATGTGGTCG 58.803 55.000 0.00 0.00 0.00 4.79
6604 7374 0.928229 GCGTTGATCCGTATGTGGTC 59.072 55.000 0.00 0.00 0.00 4.02
6605 7375 0.248012 TGCGTTGATCCGTATGTGGT 59.752 50.000 0.00 0.00 0.00 4.16
6606 7376 0.930310 CTGCGTTGATCCGTATGTGG 59.070 55.000 0.00 0.00 0.00 4.17
6607 7377 1.324435 CACTGCGTTGATCCGTATGTG 59.676 52.381 0.00 0.00 0.00 3.21
6608 7378 1.640428 CACTGCGTTGATCCGTATGT 58.360 50.000 0.00 0.00 0.00 2.29
6609 7379 0.930310 CCACTGCGTTGATCCGTATG 59.070 55.000 0.00 0.00 0.00 2.39
6610 7380 0.810031 GCCACTGCGTTGATCCGTAT 60.810 55.000 0.00 0.00 0.00 3.06
6611 7381 1.447140 GCCACTGCGTTGATCCGTA 60.447 57.895 0.00 0.00 0.00 4.02
6612 7382 2.742372 GCCACTGCGTTGATCCGT 60.742 61.111 0.00 0.00 0.00 4.69
6613 7383 2.434884 AGCCACTGCGTTGATCCG 60.435 61.111 0.00 0.00 44.33 4.18
6614 7384 2.456119 CGAGCCACTGCGTTGATCC 61.456 63.158 0.00 0.00 44.33 3.36
6615 7385 2.456119 CCGAGCCACTGCGTTGATC 61.456 63.158 0.00 0.00 44.33 2.92
6616 7386 2.434884 CCGAGCCACTGCGTTGAT 60.435 61.111 0.00 0.00 44.33 2.57
6617 7387 2.449031 ATTCCGAGCCACTGCGTTGA 62.449 55.000 0.00 0.00 44.33 3.18
6618 7388 0.739462 TATTCCGAGCCACTGCGTTG 60.739 55.000 0.00 0.00 44.33 4.10
6619 7389 0.178068 ATATTCCGAGCCACTGCGTT 59.822 50.000 0.00 0.00 44.33 4.84
6620 7390 1.037493 TATATTCCGAGCCACTGCGT 58.963 50.000 0.00 0.00 44.33 5.24
6621 7391 1.792949 GTTATATTCCGAGCCACTGCG 59.207 52.381 0.00 0.00 44.33 5.18
6622 7392 2.143925 GGTTATATTCCGAGCCACTGC 58.856 52.381 0.00 0.00 37.95 4.40
6623 7393 3.393800 CAGGTTATATTCCGAGCCACTG 58.606 50.000 0.00 0.00 0.00 3.66
6624 7394 2.224305 GCAGGTTATATTCCGAGCCACT 60.224 50.000 0.00 0.00 0.00 4.00
6625 7395 2.143925 GCAGGTTATATTCCGAGCCAC 58.856 52.381 0.00 0.00 0.00 5.01
6626 7396 1.765904 TGCAGGTTATATTCCGAGCCA 59.234 47.619 11.35 0.00 32.74 4.75
6627 7397 2.543777 TGCAGGTTATATTCCGAGCC 57.456 50.000 11.35 0.00 32.74 4.70
6628 7398 4.893424 TTTTGCAGGTTATATTCCGAGC 57.107 40.909 0.00 8.79 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.