Multiple sequence alignment - TraesCS3D01G181800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G181800 chr3D 100.000 3013 0 0 1 3013 164547970 164544958 0.000000e+00 5565.0
1 TraesCS3D01G181800 chr3D 85.409 281 16 13 2670 2925 484936910 484937190 4.950000e-68 268.0
2 TraesCS3D01G181800 chr3B 96.548 1883 54 8 4 1882 240533090 240531215 0.000000e+00 3107.0
3 TraesCS3D01G181800 chr3B 89.855 345 30 5 2274 2617 553091872 553091532 3.570000e-119 438.0
4 TraesCS3D01G181800 chr3B 92.042 289 17 6 2255 2541 803660349 803660065 4.680000e-108 401.0
5 TraesCS3D01G181800 chr3B 87.352 253 32 0 2274 2526 527626372 527626120 1.060000e-74 291.0
6 TraesCS3D01G181800 chr3B 80.519 77 14 1 2672 2747 225259020 225259096 1.170000e-04 58.4
7 TraesCS3D01G181800 chr3A 95.755 1225 45 6 1056 2276 196762379 196761158 0.000000e+00 1967.0
8 TraesCS3D01G181800 chr3A 96.746 1014 29 4 4 1016 196763374 196762364 0.000000e+00 1687.0
9 TraesCS3D01G181800 chr3A 88.283 367 18 5 2672 3013 523380158 523379792 1.670000e-112 416.0
10 TraesCS3D01G181800 chr3A 88.973 263 28 1 2272 2534 159419438 159419177 1.040000e-84 324.0
11 TraesCS3D01G181800 chr3A 93.662 142 7 1 2531 2670 196761162 196761021 8.460000e-51 211.0
12 TraesCS3D01G181800 chr3A 87.500 112 12 2 2531 2640 188049362 188049473 8.770000e-26 128.0
13 TraesCS3D01G181800 chr3A 88.073 109 11 2 2531 2637 441494706 441494814 8.770000e-26 128.0
14 TraesCS3D01G181800 chr2A 96.947 262 8 0 2273 2534 585818885 585819146 9.910000e-120 440.0
15 TraesCS3D01G181800 chr2A 95.849 265 9 2 2272 2535 1882079 1882342 7.720000e-116 427.0
16 TraesCS3D01G181800 chr2A 86.268 284 31 8 2260 2539 778279934 778279655 4.880000e-78 302.0
17 TraesCS3D01G181800 chr2A 85.057 174 22 4 2104 2274 756124191 756124019 1.110000e-39 174.0
18 TraesCS3D01G181800 chr4D 96.935 261 8 0 2274 2534 48708917 48708657 3.570000e-119 438.0
19 TraesCS3D01G181800 chr4D 96.578 263 9 0 2273 2535 47750968 47750706 1.280000e-118 436.0
20 TraesCS3D01G181800 chr7A 96.565 262 9 0 2274 2535 535468572 535468311 4.610000e-118 435.0
21 TraesCS3D01G181800 chr7A 86.792 371 23 6 2668 3012 64465491 64465121 1.010000e-104 390.0
22 TraesCS3D01G181800 chr7A 86.376 367 25 12 2672 3013 645214666 645215032 7.880000e-101 377.0
23 TraesCS3D01G181800 chr7A 84.274 248 14 12 2672 2894 42016581 42016828 5.060000e-53 219.0
24 TraesCS3D01G181800 chr7A 90.566 106 8 1 2531 2634 176271964 176272069 4.050000e-29 139.0
25 TraesCS3D01G181800 chr7A 93.976 83 3 2 2672 2752 645128383 645128465 1.130000e-24 124.0
26 TraesCS3D01G181800 chr7A 92.771 83 4 2 2672 2752 645114362 645114444 5.280000e-23 119.0
27 TraesCS3D01G181800 chr5D 96.565 262 9 0 2274 2535 87803613 87803352 4.610000e-118 435.0
28 TraesCS3D01G181800 chr5D 90.146 274 25 2 2263 2535 558926620 558926348 3.690000e-94 355.0
29 TraesCS3D01G181800 chr5D 87.037 162 18 3 2115 2274 60522757 60522597 2.390000e-41 180.0
30 TraesCS3D01G181800 chr2D 96.565 262 9 0 2273 2534 377120580 377120841 4.610000e-118 435.0
31 TraesCS3D01G181800 chr2D 88.580 324 17 7 2692 3013 608521017 608520712 2.840000e-100 375.0
32 TraesCS3D01G181800 chr2D 86.667 165 19 3 2112 2274 15514325 15514162 2.390000e-41 180.0
33 TraesCS3D01G181800 chr2D 86.061 165 20 3 2112 2274 427337330 427337493 1.110000e-39 174.0
34 TraesCS3D01G181800 chr2D 78.947 190 38 2 1309 1497 64011106 64011294 8.770000e-26 128.0
35 TraesCS3D01G181800 chr7D 95.506 267 12 0 2268 2534 426172201 426171935 7.720000e-116 427.0
36 TraesCS3D01G181800 chr7D 90.997 311 17 5 2714 3013 578799571 578799261 2.800000e-110 409.0
37 TraesCS3D01G181800 chr7D 86.921 367 22 6 2672 3013 37828885 37828520 3.640000e-104 388.0
38 TraesCS3D01G181800 chr7D 89.007 282 22 4 2255 2534 169823617 169823891 1.030000e-89 340.0
39 TraesCS3D01G181800 chr7D 86.228 167 20 3 2110 2274 587298176 587298341 8.580000e-41 178.0
40 TraesCS3D01G181800 chr7D 91.000 100 7 2 2536 2633 111748847 111748748 1.880000e-27 134.0
41 TraesCS3D01G181800 chr5B 88.102 353 30 10 2672 3013 32025909 32026260 2.800000e-110 409.0
42 TraesCS3D01G181800 chr6A 87.738 367 18 13 2672 3013 74152749 74153113 1.300000e-108 403.0
43 TraesCS3D01G181800 chr1D 92.115 279 21 1 2256 2534 426024957 426025234 2.820000e-105 392.0
44 TraesCS3D01G181800 chr1D 87.410 278 32 2 2260 2534 415638550 415638273 1.740000e-82 316.0
45 TraesCS3D01G181800 chr4A 87.042 355 22 4 2683 3013 4497439 4497085 2.190000e-101 379.0
46 TraesCS3D01G181800 chr4A 87.500 112 12 2 2531 2640 192982879 192982768 8.770000e-26 128.0
47 TraesCS3D01G181800 chrUn 88.636 308 35 0 1182 1489 296339372 296339679 2.840000e-100 375.0
48 TraesCS3D01G181800 chr1B 88.852 305 34 0 1185 1489 21383951 21383647 2.840000e-100 375.0
49 TraesCS3D01G181800 chr1B 88.852 305 34 0 1185 1489 21390741 21390437 2.840000e-100 375.0
50 TraesCS3D01G181800 chr1B 88.197 305 36 0 1185 1489 21409318 21409014 6.140000e-97 364.0
51 TraesCS3D01G181800 chr4B 86.127 346 24 11 2692 3013 662436965 662437310 4.780000e-93 351.0
52 TraesCS3D01G181800 chr7B 87.107 318 16 12 2672 2964 678542604 678542921 1.340000e-88 337.0
53 TraesCS3D01G181800 chr7B 86.420 162 21 1 2114 2274 586301124 586300963 3.090000e-40 176.0
54 TraesCS3D01G181800 chr7B 89.623 106 9 1 2531 2634 124540454 124540349 1.880000e-27 134.0
55 TraesCS3D01G181800 chr1A 87.589 282 32 3 2256 2534 143280489 143280770 1.040000e-84 324.0
56 TraesCS3D01G181800 chr1A 86.250 160 19 1 1340 1496 16093936 16094095 1.440000e-38 171.0
57 TraesCS3D01G181800 chr1A 90.291 103 9 1 2532 2633 578924714 578924816 1.880000e-27 134.0
58 TraesCS3D01G181800 chr1A 87.736 106 11 2 2531 2634 92312339 92312444 4.080000e-24 122.0
59 TraesCS3D01G181800 chr1A 86.607 112 13 2 2531 2640 369171831 369171720 4.080000e-24 122.0
60 TraesCS3D01G181800 chr1A 86.607 112 13 2 2531 2640 570706703 570706592 4.080000e-24 122.0
61 TraesCS3D01G181800 chr6D 86.145 166 20 3 2111 2274 434447159 434447323 3.090000e-40 176.0
62 TraesCS3D01G181800 chr6D 87.963 108 11 2 2531 2636 27318097 27317990 3.150000e-25 126.0
63 TraesCS3D01G181800 chr2B 86.145 166 20 3 2111 2274 616964210 616964374 3.090000e-40 176.0
64 TraesCS3D01G181800 chr2B 79.167 168 33 2 1330 1496 100030040 100029874 6.830000e-22 115.0
65 TraesCS3D01G181800 chr5A 87.500 112 12 2 2531 2640 162643541 162643430 8.770000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G181800 chr3D 164544958 164547970 3012 True 5565.000000 5565 100.000000 1 3013 1 chr3D.!!$R1 3012
1 TraesCS3D01G181800 chr3B 240531215 240533090 1875 True 3107.000000 3107 96.548000 4 1882 1 chr3B.!!$R1 1878
2 TraesCS3D01G181800 chr3A 196761021 196763374 2353 True 1288.333333 1967 95.387667 4 2670 3 chr3A.!!$R3 2666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 482 0.375454 CCTGTTTTTGACGTGTCGCA 59.625 50.000 0.0 0.0 0.0 5.10 F
1151 1153 1.431633 TGAGAGTTGAGGGGTAGGTCA 59.568 52.381 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1437 0.167470 CGACGTCGTACATGTGGACT 59.833 55.0 29.08 13.23 34.11 3.85 R
2807 2823 0.036875 GCTGGTCAAGTGGTTAGCCT 59.963 55.0 0.00 0.00 35.27 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.098416 GCTAGCAGGCAAAAGTAAATTCG 58.902 43.478 10.63 0.00 0.00 3.34
80 81 3.575965 AGCAGGCAAAAGTAAATTCGG 57.424 42.857 0.00 0.00 0.00 4.30
112 113 9.910511 CCGTACACAAAATATATACTTGACAAC 57.089 33.333 12.27 7.23 0.00 3.32
282 283 4.588951 TGTATGGCGAGTGAATCCTATTCT 59.411 41.667 0.00 0.00 0.00 2.40
377 378 8.351495 TCACATTCTTTCTTTTCAATTTTCCG 57.649 30.769 0.00 0.00 0.00 4.30
481 482 0.375454 CCTGTTTTTGACGTGTCGCA 59.625 50.000 0.00 0.00 0.00 5.10
553 554 4.159693 ACCTCATGCACTACGTAATTCTGA 59.840 41.667 0.00 0.00 0.00 3.27
554 555 5.109210 CCTCATGCACTACGTAATTCTGAA 58.891 41.667 0.00 0.00 0.00 3.02
623 624 9.389755 CCTAGCTAGCTAGAATTTCTTTCTTTT 57.610 33.333 40.98 9.21 46.56 2.27
859 860 5.233050 TCGACGTACTAATCACTAGCAGTAC 59.767 44.000 0.00 0.00 39.85 2.73
870 871 3.312697 CACTAGCAGTACAGTATCGCAGA 59.687 47.826 0.00 0.00 45.75 4.26
1123 1124 2.032620 TCCCTCAATCTCTAAGCCGAC 58.967 52.381 0.00 0.00 0.00 4.79
1151 1153 1.431633 TGAGAGTTGAGGGGTAGGTCA 59.568 52.381 0.00 0.00 0.00 4.02
1153 1155 1.433592 AGAGTTGAGGGGTAGGTCAGT 59.566 52.381 0.00 0.00 0.00 3.41
1300 1302 3.626924 GGGCAGGTGGTGTCGTCT 61.627 66.667 0.00 0.00 0.00 4.18
1435 1437 2.368875 GGACTTCAACCACTTCTCCTCA 59.631 50.000 0.00 0.00 0.00 3.86
1522 1524 0.247460 TCTTCCGTCCATGCAGTCTG 59.753 55.000 0.00 0.00 0.00 3.51
1530 1532 1.827344 TCCATGCAGTCTGTCGATCTT 59.173 47.619 0.93 0.00 0.00 2.40
1599 1607 1.219646 GCATGCAGGGTTTGTTGTTG 58.780 50.000 14.21 0.00 0.00 3.33
1600 1608 1.473080 GCATGCAGGGTTTGTTGTTGT 60.473 47.619 14.21 0.00 0.00 3.32
1601 1609 2.903798 CATGCAGGGTTTGTTGTTGTT 58.096 42.857 0.00 0.00 0.00 2.83
1653 1661 1.546029 GCCTGATTTGGTTGGGAAGTC 59.454 52.381 0.00 0.00 0.00 3.01
1730 1739 3.446161 GGTGCCGAGTATATGCATAGGTA 59.554 47.826 12.79 4.20 37.34 3.08
1749 1758 5.413499 AGGTATTCGTTGTGGTGTGTATAC 58.587 41.667 0.00 0.00 0.00 1.47
1812 1824 2.736144 TTAGTGTCCGTGTGATGACC 57.264 50.000 0.00 0.00 0.00 4.02
1901 1913 3.890756 TGTTGCATGCCTAGGGAAATATG 59.109 43.478 16.68 1.61 0.00 1.78
1962 1974 4.542627 TTGGTGGTGGGGAGGGGT 62.543 66.667 0.00 0.00 0.00 4.95
1969 1981 4.525028 TGGGGAGGGGTGTGTGGT 62.525 66.667 0.00 0.00 0.00 4.16
2000 2012 7.861629 TGATGAAAACATAGGGAATAGACAGT 58.138 34.615 0.00 0.00 0.00 3.55
2049 2062 8.809468 ATAGAGAATAATAGGCTGACACGATA 57.191 34.615 0.00 0.00 0.00 2.92
2121 2134 3.412386 GCAAGACAACCACTTACTCCAT 58.588 45.455 0.00 0.00 0.00 3.41
2283 2297 9.294614 ACTTATACTAATTTAGTACTCCCTCCG 57.705 37.037 16.55 4.90 43.46 4.63
2284 2298 9.294614 CTTATACTAATTTAGTACTCCCTCCGT 57.705 37.037 16.55 3.04 43.46 4.69
2285 2299 9.646522 TTATACTAATTTAGTACTCCCTCCGTT 57.353 33.333 16.55 2.44 43.46 4.44
2286 2300 6.864151 ACTAATTTAGTACTCCCTCCGTTT 57.136 37.500 7.31 0.00 37.23 3.60
2287 2301 7.250032 ACTAATTTAGTACTCCCTCCGTTTT 57.750 36.000 7.31 0.00 37.23 2.43
2288 2302 7.683578 ACTAATTTAGTACTCCCTCCGTTTTT 58.316 34.615 7.31 0.00 37.23 1.94
2289 2303 8.815912 ACTAATTTAGTACTCCCTCCGTTTTTA 58.184 33.333 7.31 0.00 37.23 1.52
2290 2304 9.828039 CTAATTTAGTACTCCCTCCGTTTTTAT 57.172 33.333 0.00 0.00 0.00 1.40
2292 2306 9.524496 AATTTAGTACTCCCTCCGTTTTTATTT 57.476 29.630 0.00 0.00 0.00 1.40
2294 2308 9.435688 TTTAGTACTCCCTCCGTTTTTATTTAC 57.564 33.333 0.00 0.00 0.00 2.01
2295 2309 7.250032 AGTACTCCCTCCGTTTTTATTTACT 57.750 36.000 0.00 0.00 0.00 2.24
2296 2310 7.326454 AGTACTCCCTCCGTTTTTATTTACTC 58.674 38.462 0.00 0.00 0.00 2.59
2297 2311 5.494724 ACTCCCTCCGTTTTTATTTACTCC 58.505 41.667 0.00 0.00 0.00 3.85
2298 2312 4.506758 TCCCTCCGTTTTTATTTACTCCG 58.493 43.478 0.00 0.00 0.00 4.63
2299 2313 3.064408 CCCTCCGTTTTTATTTACTCCGC 59.936 47.826 0.00 0.00 0.00 5.54
2300 2314 3.685756 CCTCCGTTTTTATTTACTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
2301 2315 4.334481 CCTCCGTTTTTATTTACTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
2302 2316 5.524646 CCTCCGTTTTTATTTACTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
2303 2317 6.204108 CCTCCGTTTTTATTTACTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
2304 2318 7.255001 CCTCCGTTTTTATTTACTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
2305 2319 8.659925 TCCGTTTTTATTTACTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
2306 2320 8.767085 TCCGTTTTTATTTACTCCGCATATTAG 58.233 33.333 0.00 0.00 0.00 1.73
2307 2321 8.767085 CCGTTTTTATTTACTCCGCATATTAGA 58.233 33.333 0.00 0.00 0.00 2.10
2308 2322 9.793245 CGTTTTTATTTACTCCGCATATTAGAG 57.207 33.333 0.00 0.00 0.00 2.43
2313 2327 7.948278 ATTTACTCCGCATATTAGAGTTGAC 57.052 36.000 4.78 0.00 41.09 3.18
2314 2328 6.710597 TTACTCCGCATATTAGAGTTGACT 57.289 37.500 4.78 0.00 41.09 3.41
2315 2329 4.938080 ACTCCGCATATTAGAGTTGACTG 58.062 43.478 0.00 0.00 37.60 3.51
2316 2330 4.202161 ACTCCGCATATTAGAGTTGACTGG 60.202 45.833 0.00 0.00 37.60 4.00
2317 2331 3.958147 TCCGCATATTAGAGTTGACTGGA 59.042 43.478 0.00 0.00 0.00 3.86
2318 2332 4.038042 TCCGCATATTAGAGTTGACTGGAG 59.962 45.833 0.00 0.00 0.00 3.86
2319 2333 4.202161 CCGCATATTAGAGTTGACTGGAGT 60.202 45.833 0.00 0.00 0.00 3.85
2320 2334 4.979197 CGCATATTAGAGTTGACTGGAGTC 59.021 45.833 0.00 0.00 44.97 3.36
2334 2348 6.679327 GACTGGAGTCAAACTTTGTAAAGT 57.321 37.500 4.25 4.25 45.95 2.66
2335 2349 7.085052 GACTGGAGTCAAACTTTGTAAAGTT 57.915 36.000 15.06 15.06 45.77 2.66
2393 2407 7.268199 AGCACAACAAATCTATATGATGTGG 57.732 36.000 14.96 0.83 45.19 4.17
2394 2408 7.056006 AGCACAACAAATCTATATGATGTGGA 58.944 34.615 14.96 0.00 45.19 4.02
2395 2409 7.557358 AGCACAACAAATCTATATGATGTGGAA 59.443 33.333 14.96 0.00 45.19 3.53
2396 2410 8.355169 GCACAACAAATCTATATGATGTGGAAT 58.645 33.333 14.96 0.00 45.19 3.01
2414 2428 7.492614 GTGGAATTACATTCAACAACGAATC 57.507 36.000 0.00 0.00 41.78 2.52
2415 2429 7.305474 GTGGAATTACATTCAACAACGAATCT 58.695 34.615 0.00 0.00 41.78 2.40
2416 2430 8.447833 GTGGAATTACATTCAACAACGAATCTA 58.552 33.333 0.00 0.00 41.78 1.98
2417 2431 9.004717 TGGAATTACATTCAACAACGAATCTAA 57.995 29.630 0.00 0.00 41.03 2.10
2418 2432 9.490663 GGAATTACATTCAACAACGAATCTAAG 57.509 33.333 0.00 0.00 41.03 2.18
2419 2433 9.490663 GAATTACATTCAACAACGAATCTAAGG 57.509 33.333 0.00 0.00 39.09 2.69
2420 2434 5.880054 ACATTCAACAACGAATCTAAGGG 57.120 39.130 0.00 0.00 33.27 3.95
2421 2435 5.313712 ACATTCAACAACGAATCTAAGGGT 58.686 37.500 0.00 0.00 33.27 4.34
2422 2436 6.469410 ACATTCAACAACGAATCTAAGGGTA 58.531 36.000 0.00 0.00 33.27 3.69
2423 2437 7.110155 ACATTCAACAACGAATCTAAGGGTAT 58.890 34.615 0.00 0.00 33.27 2.73
2424 2438 7.610305 ACATTCAACAACGAATCTAAGGGTATT 59.390 33.333 0.00 0.00 33.27 1.89
2425 2439 6.978343 TCAACAACGAATCTAAGGGTATTG 57.022 37.500 0.00 0.00 0.00 1.90
2426 2440 6.703319 TCAACAACGAATCTAAGGGTATTGA 58.297 36.000 0.00 0.00 0.00 2.57
2427 2441 7.335627 TCAACAACGAATCTAAGGGTATTGAT 58.664 34.615 0.00 0.00 0.00 2.57
2428 2442 7.827236 TCAACAACGAATCTAAGGGTATTGATT 59.173 33.333 0.00 0.00 32.59 2.57
2429 2443 8.458843 CAACAACGAATCTAAGGGTATTGATTT 58.541 33.333 0.00 0.00 30.41 2.17
2430 2444 7.985476 ACAACGAATCTAAGGGTATTGATTTG 58.015 34.615 0.00 0.00 36.74 2.32
2431 2445 7.610305 ACAACGAATCTAAGGGTATTGATTTGT 59.390 33.333 0.00 0.00 42.17 2.83
2432 2446 8.458843 CAACGAATCTAAGGGTATTGATTTGTT 58.541 33.333 11.95 11.95 46.17 2.83
2433 2447 9.675464 AACGAATCTAAGGGTATTGATTTGTTA 57.325 29.630 14.69 0.00 44.75 2.41
2434 2448 9.847224 ACGAATCTAAGGGTATTGATTTGTTAT 57.153 29.630 0.00 0.00 39.25 1.89
2495 2509 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
2496 2510 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
2497 2511 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
2501 2515 5.405935 AAAGCTTGACTTTGACCAAAACT 57.594 34.783 0.00 0.00 47.00 2.66
2502 2516 6.524101 AAAGCTTGACTTTGACCAAAACTA 57.476 33.333 0.00 0.00 47.00 2.24
2503 2517 6.524101 AAGCTTGACTTTGACCAAAACTAA 57.476 33.333 0.00 0.00 33.71 2.24
2504 2518 6.715347 AGCTTGACTTTGACCAAAACTAAT 57.285 33.333 0.00 0.00 0.00 1.73
2505 2519 7.817418 AGCTTGACTTTGACCAAAACTAATA 57.183 32.000 0.00 0.00 0.00 0.98
2506 2520 8.409358 AGCTTGACTTTGACCAAAACTAATAT 57.591 30.769 0.00 0.00 0.00 1.28
2507 2521 8.299570 AGCTTGACTTTGACCAAAACTAATATG 58.700 33.333 0.00 0.00 0.00 1.78
2508 2522 7.062255 GCTTGACTTTGACCAAAACTAATATGC 59.938 37.037 0.00 0.00 0.00 3.14
2509 2523 6.607689 TGACTTTGACCAAAACTAATATGCG 58.392 36.000 0.00 0.00 0.00 4.73
2510 2524 5.949735 ACTTTGACCAAAACTAATATGCGG 58.050 37.500 0.00 0.00 0.00 5.69
2511 2525 5.708230 ACTTTGACCAAAACTAATATGCGGA 59.292 36.000 0.00 0.00 0.00 5.54
2512 2526 5.811399 TTGACCAAAACTAATATGCGGAG 57.189 39.130 0.00 0.00 0.00 4.63
2513 2527 4.839121 TGACCAAAACTAATATGCGGAGT 58.161 39.130 0.00 0.00 0.00 3.85
2514 2528 5.979993 TGACCAAAACTAATATGCGGAGTA 58.020 37.500 0.00 0.00 0.00 2.59
2515 2529 6.408035 TGACCAAAACTAATATGCGGAGTAA 58.592 36.000 0.00 0.00 0.00 2.24
2516 2530 6.879993 TGACCAAAACTAATATGCGGAGTAAA 59.120 34.615 0.00 0.00 0.00 2.01
2517 2531 7.554835 TGACCAAAACTAATATGCGGAGTAAAT 59.445 33.333 0.00 0.00 0.00 1.40
2518 2532 8.967664 ACCAAAACTAATATGCGGAGTAAATA 57.032 30.769 0.00 0.00 0.00 1.40
2519 2533 9.398538 ACCAAAACTAATATGCGGAGTAAATAA 57.601 29.630 0.00 0.00 0.00 1.40
2524 2538 9.925268 AACTAATATGCGGAGTAAATAAAAACG 57.075 29.630 0.00 0.00 0.00 3.60
2525 2539 8.553696 ACTAATATGCGGAGTAAATAAAAACGG 58.446 33.333 0.00 0.00 0.00 4.44
2526 2540 7.556733 AATATGCGGAGTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
2527 2541 7.739498 ATATGCGGAGTAAATAAAAACGGAT 57.261 32.000 0.00 0.00 35.28 4.18
2528 2542 5.224562 TGCGGAGTAAATAAAAACGGATG 57.775 39.130 0.00 0.00 0.00 3.51
2529 2543 4.936411 TGCGGAGTAAATAAAAACGGATGA 59.064 37.500 0.00 0.00 0.00 2.92
2530 2544 5.411977 TGCGGAGTAAATAAAAACGGATGAA 59.588 36.000 0.00 0.00 0.00 2.57
2531 2545 5.963586 GCGGAGTAAATAAAAACGGATGAAG 59.036 40.000 0.00 0.00 0.00 3.02
2532 2546 6.402875 GCGGAGTAAATAAAAACGGATGAAGT 60.403 38.462 0.00 0.00 0.00 3.01
2533 2547 7.201548 GCGGAGTAAATAAAAACGGATGAAGTA 60.202 37.037 0.00 0.00 0.00 2.24
2534 2548 8.823818 CGGAGTAAATAAAAACGGATGAAGTAT 58.176 33.333 0.00 0.00 0.00 2.12
2617 2633 8.659925 ACAAAAACAAGATGTGCATTTATTCA 57.340 26.923 0.00 0.00 0.00 2.57
2622 2638 7.356089 ACAAGATGTGCATTTATTCATGGAT 57.644 32.000 0.00 0.00 0.00 3.41
2670 2686 5.627499 AAATTGAATCGCTGAAGCTACAA 57.373 34.783 0.10 2.56 39.32 2.41
2671 2687 4.871993 ATTGAATCGCTGAAGCTACAAG 57.128 40.909 0.10 0.00 39.32 3.16
2672 2688 2.621338 TGAATCGCTGAAGCTACAAGG 58.379 47.619 0.10 0.00 39.32 3.61
2673 2689 1.936547 GAATCGCTGAAGCTACAAGGG 59.063 52.381 0.10 0.00 39.32 3.95
2674 2690 1.195115 ATCGCTGAAGCTACAAGGGA 58.805 50.000 10.95 10.95 39.32 4.20
2675 2691 0.973632 TCGCTGAAGCTACAAGGGAA 59.026 50.000 7.31 0.00 39.32 3.97
2676 2692 1.079503 CGCTGAAGCTACAAGGGAAC 58.920 55.000 0.10 0.00 39.32 3.62
2677 2693 1.454201 GCTGAAGCTACAAGGGAACC 58.546 55.000 0.00 0.00 44.35 3.62
2678 2694 1.950954 GCTGAAGCTACAAGGGAACCC 60.951 57.143 0.94 0.94 44.90 4.11
2679 2695 4.271997 GCTGAAGCTACAAGGGAACCCT 62.272 54.545 6.57 6.57 44.90 4.34
2680 2696 4.953478 GCTGAAGCTACAAGGGAACCCTA 61.953 52.174 13.18 0.00 44.90 3.53
2681 2697 6.723464 GCTGAAGCTACAAGGGAACCCTAG 62.723 54.167 13.18 8.17 44.90 3.02
2689 2705 2.187163 GGAACCCTAGTCAGCGCC 59.813 66.667 2.29 0.00 0.00 6.53
2690 2706 2.359967 GGAACCCTAGTCAGCGCCT 61.360 63.158 2.29 0.00 0.00 5.52
2691 2707 1.597461 GAACCCTAGTCAGCGCCTT 59.403 57.895 2.29 0.00 0.00 4.35
2692 2708 0.460459 GAACCCTAGTCAGCGCCTTC 60.460 60.000 2.29 0.00 0.00 3.46
2693 2709 1.192146 AACCCTAGTCAGCGCCTTCA 61.192 55.000 2.29 0.00 0.00 3.02
2694 2710 1.142748 CCCTAGTCAGCGCCTTCAG 59.857 63.158 2.29 0.00 0.00 3.02
2695 2711 1.520342 CCTAGTCAGCGCCTTCAGC 60.520 63.158 2.29 0.00 38.52 4.26
2719 2735 3.869272 CAAGCTAAGCGGCGCCTG 61.869 66.667 30.40 19.05 37.29 4.85
2774 2790 2.163818 AAAAACTGCTGTCGATCGGA 57.836 45.000 16.41 1.13 0.00 4.55
2775 2791 2.386661 AAAACTGCTGTCGATCGGAT 57.613 45.000 16.41 0.00 0.00 4.18
2776 2792 1.927895 AAACTGCTGTCGATCGGATC 58.072 50.000 16.41 7.95 0.00 3.36
2786 2802 2.177038 ATCGGATCGATCTCGCGC 59.823 61.111 23.96 0.00 43.45 6.86
2787 2803 3.329688 ATCGGATCGATCTCGCGCC 62.330 63.158 23.96 6.92 43.45 6.53
2789 2805 3.675563 GGATCGATCTCGCGCCCT 61.676 66.667 23.96 0.00 39.60 5.19
2790 2806 2.126657 GATCGATCTCGCGCCCTC 60.127 66.667 18.29 0.00 39.60 4.30
2791 2807 2.907407 ATCGATCTCGCGCCCTCA 60.907 61.111 0.00 0.00 39.60 3.86
2792 2808 3.200887 ATCGATCTCGCGCCCTCAC 62.201 63.158 0.00 0.00 39.60 3.51
2801 2817 2.668212 CGCCCTCACGCTTCCAAA 60.668 61.111 0.00 0.00 0.00 3.28
2802 2818 2.258013 CGCCCTCACGCTTCCAAAA 61.258 57.895 0.00 0.00 0.00 2.44
2803 2819 1.791103 CGCCCTCACGCTTCCAAAAA 61.791 55.000 0.00 0.00 0.00 1.94
2804 2820 0.039165 GCCCTCACGCTTCCAAAAAG 60.039 55.000 0.00 0.00 0.00 2.27
2805 2821 0.039165 CCCTCACGCTTCCAAAAAGC 60.039 55.000 0.00 0.00 39.77 3.51
2810 2826 4.559835 GCTTCCAAAAAGCGAGGC 57.440 55.556 0.00 0.00 33.20 4.70
2811 2827 1.959848 GCTTCCAAAAAGCGAGGCT 59.040 52.632 0.00 0.00 42.56 4.58
2812 2828 1.165270 GCTTCCAAAAAGCGAGGCTA 58.835 50.000 0.00 0.00 38.25 3.93
2813 2829 1.539827 GCTTCCAAAAAGCGAGGCTAA 59.460 47.619 0.00 0.00 38.25 3.09
2814 2830 2.668556 GCTTCCAAAAAGCGAGGCTAAC 60.669 50.000 0.00 0.00 38.25 2.34
2815 2831 1.530323 TCCAAAAAGCGAGGCTAACC 58.470 50.000 0.00 0.00 38.25 2.85
2816 2832 1.202830 TCCAAAAAGCGAGGCTAACCA 60.203 47.619 0.00 0.00 38.25 3.67
2817 2833 1.068541 CCAAAAAGCGAGGCTAACCAC 60.069 52.381 0.00 0.00 38.25 4.16
2818 2834 1.880027 CAAAAAGCGAGGCTAACCACT 59.120 47.619 0.00 0.00 38.25 4.00
2819 2835 2.271944 AAAAGCGAGGCTAACCACTT 57.728 45.000 0.00 0.00 38.25 3.16
2820 2836 1.523758 AAAGCGAGGCTAACCACTTG 58.476 50.000 0.00 0.00 38.25 3.16
2821 2837 0.685097 AAGCGAGGCTAACCACTTGA 59.315 50.000 0.00 0.00 38.25 3.02
2822 2838 0.037232 AGCGAGGCTAACCACTTGAC 60.037 55.000 0.00 0.00 36.99 3.18
2823 2839 1.019805 GCGAGGCTAACCACTTGACC 61.020 60.000 0.00 0.00 39.06 4.02
2824 2840 0.320374 CGAGGCTAACCACTTGACCA 59.680 55.000 0.00 0.00 39.06 4.02
2825 2841 1.673033 CGAGGCTAACCACTTGACCAG 60.673 57.143 0.00 0.00 39.06 4.00
2826 2842 0.036875 AGGCTAACCACTTGACCAGC 59.963 55.000 0.00 0.00 39.06 4.85
2827 2843 0.960861 GGCTAACCACTTGACCAGCC 60.961 60.000 0.00 0.00 41.57 4.85
2828 2844 0.250727 GCTAACCACTTGACCAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
2829 2845 1.817740 GCTAACCACTTGACCAGCCAA 60.818 52.381 0.00 0.00 0.00 4.52
2830 2846 2.582052 CTAACCACTTGACCAGCCAAA 58.418 47.619 0.00 0.00 0.00 3.28
2831 2847 1.111277 AACCACTTGACCAGCCAAAC 58.889 50.000 0.00 0.00 0.00 2.93
2832 2848 0.258774 ACCACTTGACCAGCCAAACT 59.741 50.000 0.00 0.00 0.00 2.66
2833 2849 1.493022 ACCACTTGACCAGCCAAACTA 59.507 47.619 0.00 0.00 0.00 2.24
2834 2850 2.108250 ACCACTTGACCAGCCAAACTAT 59.892 45.455 0.00 0.00 0.00 2.12
2835 2851 3.329520 ACCACTTGACCAGCCAAACTATA 59.670 43.478 0.00 0.00 0.00 1.31
2836 2852 3.689649 CCACTTGACCAGCCAAACTATAC 59.310 47.826 0.00 0.00 0.00 1.47
2837 2853 4.565652 CCACTTGACCAGCCAAACTATACT 60.566 45.833 0.00 0.00 0.00 2.12
2838 2854 4.393062 CACTTGACCAGCCAAACTATACTG 59.607 45.833 0.00 0.00 0.00 2.74
2839 2855 4.286032 ACTTGACCAGCCAAACTATACTGA 59.714 41.667 0.00 0.00 31.67 3.41
2840 2856 5.045578 ACTTGACCAGCCAAACTATACTGAT 60.046 40.000 0.00 0.00 31.67 2.90
2841 2857 5.435686 TGACCAGCCAAACTATACTGATT 57.564 39.130 0.00 0.00 31.67 2.57
2842 2858 6.553953 TGACCAGCCAAACTATACTGATTA 57.446 37.500 0.00 0.00 31.67 1.75
2843 2859 7.136822 TGACCAGCCAAACTATACTGATTAT 57.863 36.000 0.00 0.00 31.67 1.28
2844 2860 7.573710 TGACCAGCCAAACTATACTGATTATT 58.426 34.615 0.00 0.00 31.67 1.40
2845 2861 8.052748 TGACCAGCCAAACTATACTGATTATTT 58.947 33.333 0.00 0.00 31.67 1.40
2846 2862 9.555727 GACCAGCCAAACTATACTGATTATTTA 57.444 33.333 0.00 0.00 31.67 1.40
2847 2863 9.561069 ACCAGCCAAACTATACTGATTATTTAG 57.439 33.333 0.00 0.00 31.67 1.85
2848 2864 9.778741 CCAGCCAAACTATACTGATTATTTAGA 57.221 33.333 0.00 0.00 31.67 2.10
2850 2866 9.495572 AGCCAAACTATACTGATTATTTAGAGC 57.504 33.333 0.00 0.00 0.00 4.09
2851 2867 8.436200 GCCAAACTATACTGATTATTTAGAGCG 58.564 37.037 0.00 0.00 0.00 5.03
2852 2868 9.477484 CCAAACTATACTGATTATTTAGAGCGT 57.523 33.333 0.00 0.00 0.00 5.07
2856 2872 9.900710 ACTATACTGATTATTTAGAGCGTGAAG 57.099 33.333 0.00 0.00 0.00 3.02
2857 2873 9.900710 CTATACTGATTATTTAGAGCGTGAAGT 57.099 33.333 0.00 0.00 0.00 3.01
2859 2875 7.907214 ACTGATTATTTAGAGCGTGAAGTTT 57.093 32.000 0.00 0.00 0.00 2.66
2860 2876 8.324163 ACTGATTATTTAGAGCGTGAAGTTTT 57.676 30.769 0.00 0.00 0.00 2.43
2861 2877 9.431887 ACTGATTATTTAGAGCGTGAAGTTTTA 57.568 29.630 0.00 0.00 0.00 1.52
2872 2888 9.447040 AGAGCGTGAAGTTTTAAAAATAGAAAC 57.553 29.630 1.31 0.00 34.37 2.78
2873 2889 9.228636 GAGCGTGAAGTTTTAAAAATAGAAACA 57.771 29.630 1.31 0.00 36.11 2.83
2874 2890 9.744468 AGCGTGAAGTTTTAAAAATAGAAACAT 57.256 25.926 1.31 0.00 36.11 2.71
2892 2908 8.062231 AGAAACATAGACGCACTATTAATTCG 57.938 34.615 0.00 0.00 39.50 3.34
2893 2909 5.824243 ACATAGACGCACTATTAATTCGC 57.176 39.130 0.00 0.00 39.50 4.70
2894 2910 5.286438 ACATAGACGCACTATTAATTCGCA 58.714 37.500 0.00 0.00 39.50 5.10
2895 2911 5.926542 ACATAGACGCACTATTAATTCGCAT 59.073 36.000 0.00 0.00 39.50 4.73
2896 2912 6.423905 ACATAGACGCACTATTAATTCGCATT 59.576 34.615 0.00 0.00 39.50 3.56
2897 2913 7.597369 ACATAGACGCACTATTAATTCGCATTA 59.403 33.333 0.00 0.00 39.50 1.90
2898 2914 6.211664 AGACGCACTATTAATTCGCATTAC 57.788 37.500 0.00 0.00 0.00 1.89
2899 2915 5.751509 AGACGCACTATTAATTCGCATTACA 59.248 36.000 0.00 0.00 0.00 2.41
2900 2916 5.734311 ACGCACTATTAATTCGCATTACAC 58.266 37.500 0.00 0.00 0.00 2.90
2901 2917 5.522460 ACGCACTATTAATTCGCATTACACT 59.478 36.000 0.00 0.00 0.00 3.55
2902 2918 5.840781 CGCACTATTAATTCGCATTACACTG 59.159 40.000 0.00 0.00 0.00 3.66
2903 2919 6.509517 CGCACTATTAATTCGCATTACACTGT 60.510 38.462 0.00 0.00 0.00 3.55
2904 2920 7.306341 CGCACTATTAATTCGCATTACACTGTA 60.306 37.037 0.00 0.00 0.00 2.74
2905 2921 8.004344 GCACTATTAATTCGCATTACACTGTAG 58.996 37.037 0.00 0.00 0.00 2.74
2906 2922 8.004344 CACTATTAATTCGCATTACACTGTAGC 58.996 37.037 0.00 0.00 0.00 3.58
2907 2923 6.918892 ATTAATTCGCATTACACTGTAGCA 57.081 33.333 2.40 0.00 0.00 3.49
2908 2924 6.918892 TTAATTCGCATTACACTGTAGCAT 57.081 33.333 2.40 0.00 0.00 3.79
2909 2925 5.818136 AATTCGCATTACACTGTAGCATT 57.182 34.783 2.40 0.00 0.00 3.56
2910 2926 5.818136 ATTCGCATTACACTGTAGCATTT 57.182 34.783 2.40 0.00 0.00 2.32
2911 2927 4.857871 TCGCATTACACTGTAGCATTTC 57.142 40.909 2.40 0.00 0.00 2.17
2912 2928 3.305897 TCGCATTACACTGTAGCATTTCG 59.694 43.478 2.40 0.00 0.00 3.46
2913 2929 3.305897 CGCATTACACTGTAGCATTTCGA 59.694 43.478 2.40 0.00 0.00 3.71
2914 2930 4.025730 CGCATTACACTGTAGCATTTCGAT 60.026 41.667 0.00 0.00 0.00 3.59
2915 2931 5.502382 CGCATTACACTGTAGCATTTCGATT 60.502 40.000 0.00 0.00 0.00 3.34
2916 2932 6.258160 GCATTACACTGTAGCATTTCGATTT 58.742 36.000 0.00 0.00 0.00 2.17
2917 2933 6.747280 GCATTACACTGTAGCATTTCGATTTT 59.253 34.615 0.00 0.00 0.00 1.82
2918 2934 7.044706 GCATTACACTGTAGCATTTCGATTTTC 60.045 37.037 0.00 0.00 0.00 2.29
2919 2935 7.667043 TTACACTGTAGCATTTCGATTTTCT 57.333 32.000 0.00 0.00 0.00 2.52
2920 2936 8.766000 TTACACTGTAGCATTTCGATTTTCTA 57.234 30.769 0.00 0.00 0.00 2.10
2921 2937 7.667043 ACACTGTAGCATTTCGATTTTCTAA 57.333 32.000 0.00 0.00 0.00 2.10
2922 2938 8.268850 ACACTGTAGCATTTCGATTTTCTAAT 57.731 30.769 0.00 0.00 0.00 1.73
2923 2939 8.730680 ACACTGTAGCATTTCGATTTTCTAATT 58.269 29.630 0.00 0.00 0.00 1.40
2954 2970 9.486497 AAAAACATGTGCACATATTACAAATGA 57.514 25.926 30.92 0.00 33.52 2.57
2955 2971 9.486497 AAAACATGTGCACATATTACAAATGAA 57.514 25.926 30.92 0.00 33.52 2.57
2956 2972 8.692110 AACATGTGCACATATTACAAATGAAG 57.308 30.769 30.92 16.21 33.52 3.02
2957 2973 7.829725 ACATGTGCACATATTACAAATGAAGT 58.170 30.769 30.92 16.83 33.52 3.01
2958 2974 8.306038 ACATGTGCACATATTACAAATGAAGTT 58.694 29.630 30.92 1.63 33.52 2.66
2959 2975 8.800972 CATGTGCACATATTACAAATGAAGTTC 58.199 33.333 30.92 0.00 31.82 3.01
2960 2976 7.880105 TGTGCACATATTACAAATGAAGTTCA 58.120 30.769 17.42 8.27 0.00 3.18
2961 2977 8.522003 TGTGCACATATTACAAATGAAGTTCAT 58.478 29.630 17.42 12.75 39.09 2.57
2962 2978 8.800972 GTGCACATATTACAAATGAAGTTCATG 58.199 33.333 18.94 11.60 37.15 3.07
2963 2979 7.488792 TGCACATATTACAAATGAAGTTCATGC 59.511 33.333 18.94 14.38 37.15 4.06
2964 2980 7.305590 GCACATATTACAAATGAAGTTCATGCG 60.306 37.037 18.94 14.62 37.15 4.73
2965 2981 6.692681 ACATATTACAAATGAAGTTCATGCGC 59.307 34.615 18.94 0.00 37.15 6.09
2966 2982 4.495911 TTACAAATGAAGTTCATGCGCA 57.504 36.364 18.94 14.96 37.15 6.09
2967 2983 3.581024 ACAAATGAAGTTCATGCGCAT 57.419 38.095 19.28 19.28 37.15 4.73
2968 2984 3.247442 ACAAATGAAGTTCATGCGCATG 58.753 40.909 38.48 38.48 37.15 4.06
2969 2985 1.917273 AATGAAGTTCATGCGCATGC 58.083 45.000 39.11 27.92 37.15 4.06
2981 2997 2.957657 GCGCATGCAAAAATAGTTCG 57.042 45.000 19.57 0.00 42.15 3.95
2982 2998 1.007114 GCGCATGCAAAAATAGTTCGC 60.007 47.619 19.57 4.19 42.15 4.70
2983 2999 1.249993 CGCATGCAAAAATAGTTCGCG 59.750 47.619 19.57 0.00 0.00 5.87
2984 3000 2.250188 GCATGCAAAAATAGTTCGCGT 58.750 42.857 14.21 0.00 0.00 6.01
2985 3001 3.421741 GCATGCAAAAATAGTTCGCGTA 58.578 40.909 14.21 0.00 0.00 4.42
2986 3002 3.237433 GCATGCAAAAATAGTTCGCGTAC 59.763 43.478 14.21 7.91 0.00 3.67
2987 3003 4.647964 CATGCAAAAATAGTTCGCGTACT 58.352 39.130 22.09 22.09 0.00 2.73
2988 3004 5.725590 GCATGCAAAAATAGTTCGCGTACTA 60.726 40.000 24.78 24.78 35.25 1.82
2989 3005 5.842619 TGCAAAAATAGTTCGCGTACTAA 57.157 34.783 26.01 12.25 34.50 2.24
2990 3006 6.225703 TGCAAAAATAGTTCGCGTACTAAA 57.774 33.333 26.01 9.99 34.50 1.85
2991 3007 6.656945 TGCAAAAATAGTTCGCGTACTAAAA 58.343 32.000 26.01 9.28 34.50 1.52
2992 3008 7.130917 TGCAAAAATAGTTCGCGTACTAAAAA 58.869 30.769 26.01 8.93 34.50 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 0.530288 ATTTTGTGTACGGCATGGCC 59.470 50.000 14.46 0.00 46.75 5.36
80 81 3.708563 ATATTTTGTGTACGGCATGGC 57.291 42.857 9.69 9.69 0.00 4.40
112 113 7.044380 CGAGAACAAAATTGATACTCTCTCTCG 60.044 40.741 0.00 0.00 40.71 4.04
241 242 9.095065 CGCCATACAGTTTTCTACTTTACTTAT 57.905 33.333 0.00 0.00 33.85 1.73
252 253 3.678056 TCACTCGCCATACAGTTTTCT 57.322 42.857 0.00 0.00 0.00 2.52
282 283 4.191804 AGAGCTAGCCTAATTCTCAGGA 57.808 45.455 12.13 0.00 34.91 3.86
377 378 2.057137 TGGCTTGAGCATTCCCATAC 57.943 50.000 5.24 0.00 44.36 2.39
426 427 2.232452 CGTTGGTTAATTGCCAATGGGA 59.768 45.455 19.75 0.00 46.25 4.37
623 624 8.058847 AGCTACCTGGAATATATTTGTTGGAAA 58.941 33.333 0.00 0.00 0.00 3.13
833 834 5.091910 TGCTAGTGATTAGTACGTCGATG 57.908 43.478 2.26 2.26 0.00 3.84
870 871 4.752101 GCAGGACATAGATTTCTTATGCGT 59.248 41.667 0.00 0.00 0.00 5.24
1123 1124 1.824230 CCCTCAACTCTCACCTCTCTG 59.176 57.143 0.00 0.00 0.00 3.35
1300 1302 4.789075 GCCTCCAGCGTCGCGTAA 62.789 66.667 12.30 0.00 0.00 3.18
1435 1437 0.167470 CGACGTCGTACATGTGGACT 59.833 55.000 29.08 13.23 34.11 3.85
1499 1501 2.190578 GCATGGACGGAAGAGGGG 59.809 66.667 0.00 0.00 0.00 4.79
1522 1524 4.738124 TGAACAGATGAGACAAGATCGAC 58.262 43.478 0.00 0.00 0.00 4.20
1530 1532 5.193663 GCTATAGCTGAACAGATGAGACA 57.806 43.478 17.75 0.00 38.21 3.41
1558 1563 5.407084 TGCGAAATCAAGTCAAACGATAGAA 59.593 36.000 0.00 0.00 41.38 2.10
1559 1564 4.926832 TGCGAAATCAAGTCAAACGATAGA 59.073 37.500 0.00 0.00 41.38 1.98
1560 1565 5.203358 TGCGAAATCAAGTCAAACGATAG 57.797 39.130 0.00 0.00 46.19 2.08
1561 1566 5.559227 CATGCGAAATCAAGTCAAACGATA 58.441 37.500 0.00 0.00 0.00 2.92
1599 1607 7.833786 TCATATATAACACCCGGATCACTAAC 58.166 38.462 0.73 0.00 0.00 2.34
1600 1608 8.603898 ATCATATATAACACCCGGATCACTAA 57.396 34.615 0.73 0.00 0.00 2.24
1601 1609 8.474831 CAATCATATATAACACCCGGATCACTA 58.525 37.037 0.73 0.00 0.00 2.74
1653 1661 2.164624 GCTCACTCCACTACCACACTAG 59.835 54.545 0.00 0.00 0.00 2.57
1730 1739 3.916761 ACGTATACACACCACAACGAAT 58.083 40.909 3.32 0.00 34.62 3.34
1901 1913 8.843733 CAATGCGTGCATGATAATATTCTTTAC 58.156 33.333 10.93 0.00 36.68 2.01
1962 1974 3.289407 TTTCATCAGAACCACCACACA 57.711 42.857 0.00 0.00 32.39 3.72
1969 1981 5.512942 TCCCTATGTTTTCATCAGAACCA 57.487 39.130 0.00 0.00 41.25 3.67
2070 2083 8.547069 GCATCAGTCAGTCTAAATATTTGTCTC 58.453 37.037 11.05 0.00 0.00 3.36
2087 2100 1.901833 TGTCTTGCCTAGCATCAGTCA 59.098 47.619 0.00 0.00 38.76 3.41
2121 2134 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
2260 2274 9.646522 AAACGGAGGGAGTACTAAATTAGTATA 57.353 33.333 15.04 0.00 42.68 1.47
2276 2290 4.506758 CGGAGTAAATAAAAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
2277 2291 3.064408 GCGGAGTAAATAAAAACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
2278 2292 3.685756 TGCGGAGTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
2279 2293 4.932268 TGCGGAGTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
2280 2294 7.556733 AATATGCGGAGTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
2281 2295 8.767085 TCTAATATGCGGAGTAAATAAAAACGG 58.233 33.333 0.00 0.00 0.00 4.44
2282 2296 9.793245 CTCTAATATGCGGAGTAAATAAAAACG 57.207 33.333 0.00 0.00 0.00 3.60
2287 2301 9.472361 GTCAACTCTAATATGCGGAGTAAATAA 57.528 33.333 6.10 0.00 39.09 1.40
2288 2302 8.857098 AGTCAACTCTAATATGCGGAGTAAATA 58.143 33.333 6.10 0.00 39.09 1.40
2289 2303 7.653713 CAGTCAACTCTAATATGCGGAGTAAAT 59.346 37.037 6.10 0.00 39.09 1.40
2290 2304 6.978659 CAGTCAACTCTAATATGCGGAGTAAA 59.021 38.462 6.10 0.00 39.09 2.01
2291 2305 6.461092 CCAGTCAACTCTAATATGCGGAGTAA 60.461 42.308 6.10 0.00 39.09 2.24
2292 2306 5.009710 CCAGTCAACTCTAATATGCGGAGTA 59.990 44.000 6.10 0.00 39.09 2.59
2293 2307 4.202161 CCAGTCAACTCTAATATGCGGAGT 60.202 45.833 0.00 0.00 41.37 3.85
2294 2308 4.038042 TCCAGTCAACTCTAATATGCGGAG 59.962 45.833 0.00 0.00 0.00 4.63
2295 2309 3.958147 TCCAGTCAACTCTAATATGCGGA 59.042 43.478 0.00 0.00 0.00 5.54
2296 2310 4.202161 ACTCCAGTCAACTCTAATATGCGG 60.202 45.833 0.00 0.00 0.00 5.69
2297 2311 4.938080 ACTCCAGTCAACTCTAATATGCG 58.062 43.478 0.00 0.00 0.00 4.73
2311 2325 6.679327 ACTTTACAAAGTTTGACTCCAGTC 57.321 37.500 22.23 0.00 46.52 3.51
2367 2381 8.839343 CCACATCATATAGATTTGTTGTGCTAA 58.161 33.333 14.02 0.00 40.07 3.09
2368 2382 8.210265 TCCACATCATATAGATTTGTTGTGCTA 58.790 33.333 14.02 6.24 40.07 3.49
2369 2383 7.056006 TCCACATCATATAGATTTGTTGTGCT 58.944 34.615 14.02 0.00 40.07 4.40
2370 2384 7.263100 TCCACATCATATAGATTTGTTGTGC 57.737 36.000 14.02 0.00 40.07 4.57
2394 2408 8.458843 CCCTTAGATTCGTTGTTGAATGTAATT 58.541 33.333 6.55 0.00 40.86 1.40
2395 2409 7.610305 ACCCTTAGATTCGTTGTTGAATGTAAT 59.390 33.333 6.55 0.00 40.86 1.89
2396 2410 6.938030 ACCCTTAGATTCGTTGTTGAATGTAA 59.062 34.615 6.10 6.10 40.01 2.41
2397 2411 6.469410 ACCCTTAGATTCGTTGTTGAATGTA 58.531 36.000 0.00 0.00 38.65 2.29
2398 2412 5.313712 ACCCTTAGATTCGTTGTTGAATGT 58.686 37.500 0.00 0.00 38.65 2.71
2399 2413 5.880054 ACCCTTAGATTCGTTGTTGAATG 57.120 39.130 0.00 0.00 38.65 2.67
2400 2414 7.827236 TCAATACCCTTAGATTCGTTGTTGAAT 59.173 33.333 0.00 0.00 41.16 2.57
2401 2415 7.162761 TCAATACCCTTAGATTCGTTGTTGAA 58.837 34.615 0.00 0.00 0.00 2.69
2402 2416 6.703319 TCAATACCCTTAGATTCGTTGTTGA 58.297 36.000 0.00 0.00 0.00 3.18
2403 2417 6.978343 TCAATACCCTTAGATTCGTTGTTG 57.022 37.500 0.00 0.00 0.00 3.33
2404 2418 8.458843 CAAATCAATACCCTTAGATTCGTTGTT 58.541 33.333 0.00 0.00 30.87 2.83
2405 2419 7.610305 ACAAATCAATACCCTTAGATTCGTTGT 59.390 33.333 0.00 0.00 30.87 3.32
2406 2420 7.985476 ACAAATCAATACCCTTAGATTCGTTG 58.015 34.615 0.00 0.00 30.87 4.10
2407 2421 8.575649 AACAAATCAATACCCTTAGATTCGTT 57.424 30.769 0.00 0.00 30.87 3.85
2408 2422 9.847224 ATAACAAATCAATACCCTTAGATTCGT 57.153 29.630 0.00 0.00 30.87 3.85
2463 2477 7.542130 AGTCAAGCTTTACAAACTTTGACAAAG 59.458 33.333 23.41 23.41 44.10 2.77
2464 2478 7.375053 AGTCAAGCTTTACAAACTTTGACAAA 58.625 30.769 13.07 0.00 30.59 2.83
2465 2479 6.919721 AGTCAAGCTTTACAAACTTTGACAA 58.080 32.000 13.07 0.00 30.59 3.18
2466 2480 6.509418 AGTCAAGCTTTACAAACTTTGACA 57.491 33.333 13.07 0.00 30.59 3.58
2467 2481 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
2470 2484 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
2471 2485 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
2472 2486 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
2473 2487 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
2474 2488 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
2475 2489 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
2476 2490 5.906113 TTTGGTCAAAGTCAAGCTTTACA 57.094 34.783 13.07 0.00 44.95 2.41
2477 2491 6.330278 AGTTTTGGTCAAAGTCAAGCTTTAC 58.670 36.000 2.40 2.40 44.95 2.01
2478 2492 6.524101 AGTTTTGGTCAAAGTCAAGCTTTA 57.476 33.333 0.00 0.00 44.95 1.85
2480 2494 6.524101 TTAGTTTTGGTCAAAGTCAAGCTT 57.476 33.333 0.00 0.00 39.52 3.74
2481 2495 6.715347 ATTAGTTTTGGTCAAAGTCAAGCT 57.285 33.333 0.00 0.00 30.16 3.74
2482 2496 7.062255 GCATATTAGTTTTGGTCAAAGTCAAGC 59.938 37.037 0.00 0.00 30.16 4.01
2483 2497 7.271223 CGCATATTAGTTTTGGTCAAAGTCAAG 59.729 37.037 0.00 0.00 30.16 3.02
2484 2498 7.081349 CGCATATTAGTTTTGGTCAAAGTCAA 58.919 34.615 0.00 0.00 30.16 3.18
2485 2499 6.348950 CCGCATATTAGTTTTGGTCAAAGTCA 60.349 38.462 0.00 0.00 30.16 3.41
2486 2500 6.027749 CCGCATATTAGTTTTGGTCAAAGTC 58.972 40.000 0.00 0.00 30.16 3.01
2487 2501 5.708230 TCCGCATATTAGTTTTGGTCAAAGT 59.292 36.000 0.00 0.00 32.41 2.66
2488 2502 6.128007 ACTCCGCATATTAGTTTTGGTCAAAG 60.128 38.462 0.00 0.00 0.00 2.77
2489 2503 5.708230 ACTCCGCATATTAGTTTTGGTCAAA 59.292 36.000 0.00 0.00 0.00 2.69
2490 2504 5.250200 ACTCCGCATATTAGTTTTGGTCAA 58.750 37.500 0.00 0.00 0.00 3.18
2491 2505 4.839121 ACTCCGCATATTAGTTTTGGTCA 58.161 39.130 0.00 0.00 0.00 4.02
2492 2506 6.913873 TTACTCCGCATATTAGTTTTGGTC 57.086 37.500 0.00 0.00 0.00 4.02
2493 2507 7.875327 ATTTACTCCGCATATTAGTTTTGGT 57.125 32.000 0.00 0.00 0.00 3.67
2498 2512 9.925268 CGTTTTTATTTACTCCGCATATTAGTT 57.075 29.630 0.00 0.00 0.00 2.24
2499 2513 8.553696 CCGTTTTTATTTACTCCGCATATTAGT 58.446 33.333 0.00 0.00 0.00 2.24
2500 2514 8.767085 TCCGTTTTTATTTACTCCGCATATTAG 58.233 33.333 0.00 0.00 0.00 1.73
2501 2515 8.659925 TCCGTTTTTATTTACTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
2502 2516 7.556733 TCCGTTTTTATTTACTCCGCATATT 57.443 32.000 0.00 0.00 0.00 1.28
2503 2517 7.442969 TCATCCGTTTTTATTTACTCCGCATAT 59.557 33.333 0.00 0.00 0.00 1.78
2504 2518 6.762187 TCATCCGTTTTTATTTACTCCGCATA 59.238 34.615 0.00 0.00 0.00 3.14
2505 2519 5.587043 TCATCCGTTTTTATTTACTCCGCAT 59.413 36.000 0.00 0.00 0.00 4.73
2506 2520 4.936411 TCATCCGTTTTTATTTACTCCGCA 59.064 37.500 0.00 0.00 0.00 5.69
2507 2521 5.473796 TCATCCGTTTTTATTTACTCCGC 57.526 39.130 0.00 0.00 0.00 5.54
2508 2522 7.068692 ACTTCATCCGTTTTTATTTACTCCG 57.931 36.000 0.00 0.00 0.00 4.63
2517 2531 9.944663 GCATTTATGATACTTCATCCGTTTTTA 57.055 29.630 0.00 0.00 41.73 1.52
2518 2532 8.686334 AGCATTTATGATACTTCATCCGTTTTT 58.314 29.630 0.00 0.00 41.73 1.94
2519 2533 8.131100 CAGCATTTATGATACTTCATCCGTTTT 58.869 33.333 0.00 0.00 41.73 2.43
2520 2534 7.642669 CAGCATTTATGATACTTCATCCGTTT 58.357 34.615 0.00 0.00 41.73 3.60
2521 2535 6.293626 GCAGCATTTATGATACTTCATCCGTT 60.294 38.462 0.00 0.00 41.73 4.44
2522 2536 5.180117 GCAGCATTTATGATACTTCATCCGT 59.820 40.000 0.00 0.00 41.73 4.69
2523 2537 5.410746 AGCAGCATTTATGATACTTCATCCG 59.589 40.000 0.00 0.00 41.73 4.18
2524 2538 6.814506 AGCAGCATTTATGATACTTCATCC 57.185 37.500 0.00 0.00 41.73 3.51
2584 2600 7.414436 TGCACATCTTGTTTTTGTACTAAGTC 58.586 34.615 0.00 0.00 0.00 3.01
2600 2616 6.551975 TCCATCCATGAATAAATGCACATCTT 59.448 34.615 0.00 0.00 0.00 2.40
2616 2632 3.813443 CAAAGTACTCCCTCCATCCATG 58.187 50.000 0.00 0.00 0.00 3.66
2617 2633 2.173569 GCAAAGTACTCCCTCCATCCAT 59.826 50.000 0.00 0.00 0.00 3.41
2622 2638 0.984230 CCAGCAAAGTACTCCCTCCA 59.016 55.000 0.00 0.00 0.00 3.86
2670 2686 2.359967 GCGCTGACTAGGGTTCCCT 61.360 63.158 15.19 15.19 38.97 4.20
2671 2687 2.187163 GCGCTGACTAGGGTTCCC 59.813 66.667 0.00 0.00 38.97 3.97
2672 2688 1.900545 AAGGCGCTGACTAGGGTTCC 61.901 60.000 7.64 0.00 38.97 3.62
2673 2689 0.460459 GAAGGCGCTGACTAGGGTTC 60.460 60.000 7.64 0.00 38.97 3.62
2674 2690 1.192146 TGAAGGCGCTGACTAGGGTT 61.192 55.000 7.64 0.00 38.97 4.11
2675 2691 1.608717 CTGAAGGCGCTGACTAGGGT 61.609 60.000 7.64 0.00 38.97 4.34
2676 2692 1.142748 CTGAAGGCGCTGACTAGGG 59.857 63.158 7.64 0.00 39.68 3.53
2677 2693 1.520342 GCTGAAGGCGCTGACTAGG 60.520 63.158 7.64 0.00 0.00 3.02
2678 2694 4.100981 GCTGAAGGCGCTGACTAG 57.899 61.111 7.64 0.92 0.00 2.57
2702 2718 3.869272 CAGGCGCCGCTTAGCTTG 61.869 66.667 23.20 7.30 34.30 4.01
2755 2771 2.163818 TCCGATCGACAGCAGTTTTT 57.836 45.000 18.66 0.00 0.00 1.94
2756 2772 2.271800 GATCCGATCGACAGCAGTTTT 58.728 47.619 18.66 0.00 0.00 2.43
2757 2773 1.927895 GATCCGATCGACAGCAGTTT 58.072 50.000 18.66 0.00 0.00 2.66
2758 2774 3.650409 GATCCGATCGACAGCAGTT 57.350 52.632 18.66 0.00 0.00 3.16
2770 2786 4.026661 GGCGCGAGATCGATCCGA 62.027 66.667 28.70 0.00 43.02 4.55
2772 2788 3.618710 GAGGGCGCGAGATCGATCC 62.619 68.421 21.66 12.11 43.02 3.36
2773 2789 2.126657 GAGGGCGCGAGATCGATC 60.127 66.667 17.91 17.91 43.02 3.69
2774 2790 2.907407 TGAGGGCGCGAGATCGAT 60.907 61.111 12.10 0.00 43.02 3.59
2775 2791 3.889044 GTGAGGGCGCGAGATCGA 61.889 66.667 12.10 0.00 43.02 3.59
2784 2800 1.791103 TTTTTGGAAGCGTGAGGGCG 61.791 55.000 0.00 0.00 38.18 6.13
2785 2801 0.039165 CTTTTTGGAAGCGTGAGGGC 60.039 55.000 0.00 0.00 0.00 5.19
2786 2802 0.039165 GCTTTTTGGAAGCGTGAGGG 60.039 55.000 0.00 0.00 33.20 4.30
2787 2803 3.479255 GCTTTTTGGAAGCGTGAGG 57.521 52.632 0.00 0.00 33.20 3.86
2793 2809 1.165270 TAGCCTCGCTTTTTGGAAGC 58.835 50.000 0.81 0.81 40.44 3.86
2794 2810 2.095212 GGTTAGCCTCGCTTTTTGGAAG 60.095 50.000 0.00 0.00 40.44 3.46
2795 2811 1.883926 GGTTAGCCTCGCTTTTTGGAA 59.116 47.619 0.00 0.00 40.44 3.53
2796 2812 1.202830 TGGTTAGCCTCGCTTTTTGGA 60.203 47.619 0.00 0.00 40.44 3.53
2797 2813 1.068541 GTGGTTAGCCTCGCTTTTTGG 60.069 52.381 0.00 0.00 40.44 3.28
2798 2814 1.880027 AGTGGTTAGCCTCGCTTTTTG 59.120 47.619 0.00 0.00 40.44 2.44
2799 2815 2.271944 AGTGGTTAGCCTCGCTTTTT 57.728 45.000 0.00 0.00 40.44 1.94
2800 2816 1.880027 CAAGTGGTTAGCCTCGCTTTT 59.120 47.619 0.00 0.00 40.44 2.27
2801 2817 1.071699 TCAAGTGGTTAGCCTCGCTTT 59.928 47.619 0.00 0.00 40.44 3.51
2802 2818 0.685097 TCAAGTGGTTAGCCTCGCTT 59.315 50.000 0.00 0.00 40.44 4.68
2803 2819 0.037232 GTCAAGTGGTTAGCCTCGCT 60.037 55.000 0.00 0.00 43.41 4.93
2804 2820 1.019805 GGTCAAGTGGTTAGCCTCGC 61.020 60.000 0.00 0.00 35.27 5.03
2805 2821 0.320374 TGGTCAAGTGGTTAGCCTCG 59.680 55.000 0.00 0.00 35.27 4.63
2806 2822 1.946283 GCTGGTCAAGTGGTTAGCCTC 60.946 57.143 0.00 0.00 35.27 4.70
2807 2823 0.036875 GCTGGTCAAGTGGTTAGCCT 59.963 55.000 0.00 0.00 35.27 4.58
2808 2824 0.960861 GGCTGGTCAAGTGGTTAGCC 60.961 60.000 0.00 0.00 43.20 3.93
2809 2825 0.250727 TGGCTGGTCAAGTGGTTAGC 60.251 55.000 0.00 0.00 0.00 3.09
2810 2826 2.270352 TTGGCTGGTCAAGTGGTTAG 57.730 50.000 0.00 0.00 0.00 2.34
2811 2827 2.092103 AGTTTGGCTGGTCAAGTGGTTA 60.092 45.455 0.00 0.00 0.00 2.85
2812 2828 1.111277 GTTTGGCTGGTCAAGTGGTT 58.889 50.000 0.00 0.00 0.00 3.67
2813 2829 0.258774 AGTTTGGCTGGTCAAGTGGT 59.741 50.000 0.00 0.00 0.00 4.16
2814 2830 2.270352 TAGTTTGGCTGGTCAAGTGG 57.730 50.000 0.00 0.00 0.00 4.00
2815 2831 4.393062 CAGTATAGTTTGGCTGGTCAAGTG 59.607 45.833 0.00 0.00 0.00 3.16
2816 2832 4.286032 TCAGTATAGTTTGGCTGGTCAAGT 59.714 41.667 0.00 0.00 0.00 3.16
2817 2833 4.832248 TCAGTATAGTTTGGCTGGTCAAG 58.168 43.478 0.00 0.00 0.00 3.02
2818 2834 4.901197 TCAGTATAGTTTGGCTGGTCAA 57.099 40.909 0.00 0.00 0.00 3.18
2819 2835 5.435686 AATCAGTATAGTTTGGCTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
2820 2836 8.451908 AAATAATCAGTATAGTTTGGCTGGTC 57.548 34.615 0.00 0.00 0.00 4.02
2821 2837 9.561069 CTAAATAATCAGTATAGTTTGGCTGGT 57.439 33.333 0.00 0.00 0.00 4.00
2822 2838 9.778741 TCTAAATAATCAGTATAGTTTGGCTGG 57.221 33.333 0.00 0.00 0.00 4.85
2824 2840 9.495572 GCTCTAAATAATCAGTATAGTTTGGCT 57.504 33.333 0.00 0.00 0.00 4.75
2825 2841 8.436200 CGCTCTAAATAATCAGTATAGTTTGGC 58.564 37.037 0.00 0.00 0.00 4.52
2826 2842 9.477484 ACGCTCTAAATAATCAGTATAGTTTGG 57.523 33.333 0.00 0.00 0.00 3.28
2830 2846 9.900710 CTTCACGCTCTAAATAATCAGTATAGT 57.099 33.333 0.00 0.00 0.00 2.12
2831 2847 9.900710 ACTTCACGCTCTAAATAATCAGTATAG 57.099 33.333 0.00 0.00 0.00 1.31
2833 2849 9.601217 AAACTTCACGCTCTAAATAATCAGTAT 57.399 29.630 0.00 0.00 0.00 2.12
2834 2850 8.997621 AAACTTCACGCTCTAAATAATCAGTA 57.002 30.769 0.00 0.00 0.00 2.74
2835 2851 7.907214 AAACTTCACGCTCTAAATAATCAGT 57.093 32.000 0.00 0.00 0.00 3.41
2846 2862 9.447040 GTTTCTATTTTTAAAACTTCACGCTCT 57.553 29.630 0.00 0.00 31.70 4.09
2847 2863 9.228636 TGTTTCTATTTTTAAAACTTCACGCTC 57.771 29.630 0.00 0.00 34.69 5.03
2848 2864 9.744468 ATGTTTCTATTTTTAAAACTTCACGCT 57.256 25.926 0.00 0.00 34.69 5.07
2866 2882 9.177304 CGAATTAATAGTGCGTCTATGTTTCTA 57.823 33.333 2.70 0.00 39.10 2.10
2867 2883 7.306632 GCGAATTAATAGTGCGTCTATGTTTCT 60.307 37.037 2.70 0.00 39.10 2.52
2868 2884 6.786103 GCGAATTAATAGTGCGTCTATGTTTC 59.214 38.462 2.70 5.73 39.10 2.78
2869 2885 6.256975 TGCGAATTAATAGTGCGTCTATGTTT 59.743 34.615 2.70 0.00 39.10 2.83
2870 2886 5.751509 TGCGAATTAATAGTGCGTCTATGTT 59.248 36.000 2.70 0.38 39.10 2.71
2871 2887 5.286438 TGCGAATTAATAGTGCGTCTATGT 58.714 37.500 2.70 0.00 39.10 2.29
2872 2888 5.822584 TGCGAATTAATAGTGCGTCTATG 57.177 39.130 2.70 0.00 39.10 2.23
2873 2889 7.597369 TGTAATGCGAATTAATAGTGCGTCTAT 59.403 33.333 0.00 0.00 40.68 1.98
2874 2890 6.919115 TGTAATGCGAATTAATAGTGCGTCTA 59.081 34.615 0.00 0.00 0.00 2.59
2875 2891 5.751509 TGTAATGCGAATTAATAGTGCGTCT 59.248 36.000 0.00 0.00 0.00 4.18
2876 2892 5.839239 GTGTAATGCGAATTAATAGTGCGTC 59.161 40.000 0.00 0.00 0.00 5.19
2877 2893 5.522460 AGTGTAATGCGAATTAATAGTGCGT 59.478 36.000 0.00 0.00 0.00 5.24
2878 2894 5.840781 CAGTGTAATGCGAATTAATAGTGCG 59.159 40.000 0.00 0.00 0.00 5.34
2879 2895 6.715464 ACAGTGTAATGCGAATTAATAGTGC 58.285 36.000 12.96 0.00 0.00 4.40
2880 2896 8.004344 GCTACAGTGTAATGCGAATTAATAGTG 58.996 37.037 4.21 6.24 0.00 2.74
2881 2897 7.709182 TGCTACAGTGTAATGCGAATTAATAGT 59.291 33.333 4.21 0.00 0.00 2.12
2882 2898 8.072238 TGCTACAGTGTAATGCGAATTAATAG 57.928 34.615 4.21 0.00 0.00 1.73
2883 2899 8.601845 ATGCTACAGTGTAATGCGAATTAATA 57.398 30.769 4.21 0.00 0.00 0.98
2884 2900 6.918892 TGCTACAGTGTAATGCGAATTAAT 57.081 33.333 4.21 0.00 0.00 1.40
2885 2901 6.918892 ATGCTACAGTGTAATGCGAATTAA 57.081 33.333 4.21 0.00 0.00 1.40
2886 2902 6.918892 AATGCTACAGTGTAATGCGAATTA 57.081 33.333 4.21 0.00 0.00 1.40
2887 2903 5.818136 AATGCTACAGTGTAATGCGAATT 57.182 34.783 4.21 0.00 0.00 2.17
2888 2904 5.502382 CGAAATGCTACAGTGTAATGCGAAT 60.502 40.000 4.21 0.00 0.00 3.34
2889 2905 4.201676 CGAAATGCTACAGTGTAATGCGAA 60.202 41.667 4.21 0.00 0.00 4.70
2890 2906 3.305897 CGAAATGCTACAGTGTAATGCGA 59.694 43.478 4.21 0.00 0.00 5.10
2891 2907 3.305897 TCGAAATGCTACAGTGTAATGCG 59.694 43.478 4.21 4.73 0.00 4.73
2892 2908 4.857871 TCGAAATGCTACAGTGTAATGC 57.142 40.909 4.21 6.04 0.00 3.56
2893 2909 8.177663 AGAAAATCGAAATGCTACAGTGTAATG 58.822 33.333 4.21 0.00 0.00 1.90
2894 2910 8.268850 AGAAAATCGAAATGCTACAGTGTAAT 57.731 30.769 4.21 0.00 0.00 1.89
2895 2911 7.667043 AGAAAATCGAAATGCTACAGTGTAA 57.333 32.000 4.21 0.00 0.00 2.41
2896 2912 8.766000 TTAGAAAATCGAAATGCTACAGTGTA 57.234 30.769 2.36 2.36 0.00 2.90
2897 2913 7.667043 TTAGAAAATCGAAATGCTACAGTGT 57.333 32.000 0.00 0.00 0.00 3.55
2928 2944 9.486497 TCATTTGTAATATGTGCACATGTTTTT 57.514 25.926 36.40 26.03 38.39 1.94
2929 2945 9.486497 TTCATTTGTAATATGTGCACATGTTTT 57.514 25.926 36.40 27.94 38.39 2.43
2930 2946 9.142515 CTTCATTTGTAATATGTGCACATGTTT 57.857 29.630 36.40 29.89 38.39 2.83
2931 2947 8.306038 ACTTCATTTGTAATATGTGCACATGTT 58.694 29.630 34.53 34.53 40.15 2.71
2932 2948 7.829725 ACTTCATTTGTAATATGTGCACATGT 58.170 30.769 36.72 29.69 37.15 3.21
2933 2949 8.692110 AACTTCATTTGTAATATGTGCACATG 57.308 30.769 36.72 21.15 37.15 3.21
2934 2950 8.522003 TGAACTTCATTTGTAATATGTGCACAT 58.478 29.630 33.20 33.20 40.22 3.21
2935 2951 7.880105 TGAACTTCATTTGTAATATGTGCACA 58.120 30.769 24.08 24.08 0.00 4.57
2936 2952 8.800972 CATGAACTTCATTTGTAATATGTGCAC 58.199 33.333 10.75 10.75 34.28 4.57
2937 2953 7.488792 GCATGAACTTCATTTGTAATATGTGCA 59.511 33.333 1.17 0.00 34.28 4.57
2938 2954 7.305590 CGCATGAACTTCATTTGTAATATGTGC 60.306 37.037 1.17 0.00 34.28 4.57
2939 2955 7.305590 GCGCATGAACTTCATTTGTAATATGTG 60.306 37.037 0.30 0.00 34.28 3.21
2940 2956 6.692681 GCGCATGAACTTCATTTGTAATATGT 59.307 34.615 0.30 0.00 34.28 2.29
2941 2957 6.692249 TGCGCATGAACTTCATTTGTAATATG 59.308 34.615 5.66 0.00 34.28 1.78
2942 2958 6.794374 TGCGCATGAACTTCATTTGTAATAT 58.206 32.000 5.66 0.00 34.28 1.28
2943 2959 6.188400 TGCGCATGAACTTCATTTGTAATA 57.812 33.333 5.66 0.00 34.28 0.98
2944 2960 5.058149 TGCGCATGAACTTCATTTGTAAT 57.942 34.783 5.66 0.00 34.28 1.89
2945 2961 4.495911 TGCGCATGAACTTCATTTGTAA 57.504 36.364 5.66 0.00 34.28 2.41
2946 2962 4.413969 CATGCGCATGAACTTCATTTGTA 58.586 39.130 40.62 0.00 41.20 2.41
2947 2963 3.247442 CATGCGCATGAACTTCATTTGT 58.753 40.909 40.62 4.29 41.20 2.83
2948 2964 2.028763 GCATGCGCATGAACTTCATTTG 59.971 45.455 45.47 22.58 41.20 2.32
2949 2965 2.264813 GCATGCGCATGAACTTCATTT 58.735 42.857 45.47 10.44 41.20 2.32
2950 2966 1.202817 TGCATGCGCATGAACTTCATT 59.797 42.857 45.47 11.03 45.36 2.57
2951 2967 0.812549 TGCATGCGCATGAACTTCAT 59.187 45.000 45.47 11.86 45.36 2.57
2952 2968 2.255430 TGCATGCGCATGAACTTCA 58.745 47.368 45.47 32.04 45.36 3.02
2962 2978 1.007114 GCGAACTATTTTTGCATGCGC 60.007 47.619 14.09 0.00 39.24 6.09
2963 2979 1.249993 CGCGAACTATTTTTGCATGCG 59.750 47.619 14.09 0.00 36.96 4.73
2964 2980 2.250188 ACGCGAACTATTTTTGCATGC 58.750 42.857 15.93 11.82 0.00 4.06
2965 2981 4.647964 AGTACGCGAACTATTTTTGCATG 58.352 39.130 15.93 0.00 0.00 4.06
2966 2982 4.939509 AGTACGCGAACTATTTTTGCAT 57.060 36.364 15.93 0.00 0.00 3.96
2967 2983 5.842619 TTAGTACGCGAACTATTTTTGCA 57.157 34.783 15.93 0.00 32.16 4.08
2968 2984 7.537602 TTTTTAGTACGCGAACTATTTTTGC 57.462 32.000 15.93 0.00 32.16 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.