Multiple sequence alignment - TraesCS3D01G181000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G181000 chr3D 100.000 2345 0 0 1 2345 163118798 163116454 0.000000e+00 4331.0
1 TraesCS3D01G181000 chr3D 90.523 612 54 4 919 1529 465071238 465071846 0.000000e+00 806.0
2 TraesCS3D01G181000 chr3D 89.091 220 22 2 2094 2311 54386065 54386284 2.970000e-69 272.0
3 TraesCS3D01G181000 chr3A 92.177 1828 68 27 318 2105 195455170 195453378 0.000000e+00 2514.0
4 TraesCS3D01G181000 chr3A 89.706 612 57 6 919 1527 743831623 743831015 0.000000e+00 776.0
5 TraesCS3D01G181000 chr3A 88.837 215 18 2 318 532 38273362 38273570 2.310000e-65 259.0
6 TraesCS3D01G181000 chr3A 91.534 189 15 1 2090 2277 529671319 529671131 2.310000e-65 259.0
7 TraesCS3D01G181000 chr3A 89.372 207 19 2 327 531 500991736 500991941 8.310000e-65 257.0
8 TraesCS3D01G181000 chr3B 94.436 1366 47 8 318 1681 239900818 239899480 0.000000e+00 2074.0
9 TraesCS3D01G181000 chr3B 90.196 612 54 6 919 1529 34707165 34707771 0.000000e+00 793.0
10 TraesCS3D01G181000 chr3B 90.458 262 14 8 1679 1930 239899431 239899171 3.730000e-88 335.0
11 TraesCS3D01G181000 chr3B 89.691 194 20 0 318 511 490890999 490891192 5.000000e-62 248.0
12 TraesCS3D01G181000 chr3B 89.231 195 12 3 1903 2095 239899162 239898975 3.900000e-58 235.0
13 TraesCS3D01G181000 chr2B 89.706 612 59 4 919 1529 276492578 276491970 0.000000e+00 778.0
14 TraesCS3D01G181000 chr2B 91.189 227 9 3 98 314 405751720 405751945 4.900000e-77 298.0
15 TraesCS3D01G181000 chr2B 95.370 108 3 1 1 106 405750363 405750470 1.110000e-38 171.0
16 TraesCS3D01G181000 chr7B 89.542 612 60 4 919 1529 519228800 519228192 0.000000e+00 773.0
17 TraesCS3D01G181000 chr7B 91.878 197 16 0 318 514 612313390 612313586 2.300000e-70 276.0
18 TraesCS3D01G181000 chr7B 85.020 247 30 6 2104 2345 562382148 562382392 6.470000e-61 244.0
19 TraesCS3D01G181000 chr2A 89.216 612 60 6 919 1527 479846970 479847578 0.000000e+00 760.0
20 TraesCS3D01G181000 chr2A 83.794 253 38 3 2093 2343 502621949 502621698 1.080000e-58 237.0
21 TraesCS3D01G181000 chr5B 88.889 612 62 6 919 1527 248665014 248664406 0.000000e+00 749.0
22 TraesCS3D01G181000 chr5B 88.837 215 22 2 318 532 633310372 633310584 1.790000e-66 263.0
23 TraesCS3D01G181000 chr4D 90.217 276 24 3 1254 1529 20243014 20242742 7.970000e-95 357.0
24 TraesCS3D01G181000 chr4D 88.703 239 24 3 2108 2343 328542503 328542741 2.950000e-74 289.0
25 TraesCS3D01G181000 chr4D 97.500 40 1 0 275 314 295651438 295651399 4.180000e-08 69.4
26 TraesCS3D01G181000 chr1D 86.792 318 28 5 8 314 439131447 439131133 2.230000e-90 342.0
27 TraesCS3D01G181000 chr4A 87.402 254 30 2 2091 2342 606410158 606409905 8.200000e-75 291.0
28 TraesCS3D01G181000 chr7D 85.662 272 33 5 2076 2343 577704235 577703966 4.930000e-72 281.0
29 TraesCS3D01G181000 chr2D 89.640 222 19 4 2089 2308 445190013 445189794 1.770000e-71 279.0
30 TraesCS3D01G181000 chr7A 91.878 197 16 0 318 514 648145033 648145229 2.300000e-70 276.0
31 TraesCS3D01G181000 chr7A 90.094 212 8 8 327 532 192661436 192661232 1.790000e-66 263.0
32 TraesCS3D01G181000 chr6D 86.900 229 18 7 2094 2314 41542672 41542448 1.800000e-61 246.0
33 TraesCS3D01G181000 chr5A 82.883 111 17 2 2235 2343 567024675 567024785 5.330000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G181000 chr3D 163116454 163118798 2344 True 4331.000000 4331 100.0000 1 2345 1 chr3D.!!$R1 2344
1 TraesCS3D01G181000 chr3D 465071238 465071846 608 False 806.000000 806 90.5230 919 1529 1 chr3D.!!$F2 610
2 TraesCS3D01G181000 chr3A 195453378 195455170 1792 True 2514.000000 2514 92.1770 318 2105 1 chr3A.!!$R1 1787
3 TraesCS3D01G181000 chr3A 743831015 743831623 608 True 776.000000 776 89.7060 919 1527 1 chr3A.!!$R3 608
4 TraesCS3D01G181000 chr3B 239898975 239900818 1843 True 881.333333 2074 91.3750 318 2095 3 chr3B.!!$R1 1777
5 TraesCS3D01G181000 chr3B 34707165 34707771 606 False 793.000000 793 90.1960 919 1529 1 chr3B.!!$F1 610
6 TraesCS3D01G181000 chr2B 276491970 276492578 608 True 778.000000 778 89.7060 919 1529 1 chr2B.!!$R1 610
7 TraesCS3D01G181000 chr2B 405750363 405751945 1582 False 234.500000 298 93.2795 1 314 2 chr2B.!!$F1 313
8 TraesCS3D01G181000 chr7B 519228192 519228800 608 True 773.000000 773 89.5420 919 1529 1 chr7B.!!$R1 610
9 TraesCS3D01G181000 chr2A 479846970 479847578 608 False 760.000000 760 89.2160 919 1527 1 chr2A.!!$F1 608
10 TraesCS3D01G181000 chr5B 248664406 248665014 608 True 749.000000 749 88.8890 919 1527 1 chr5B.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 1465 1.524393 TCTCACGCCGTATCCGCTA 60.524 57.895 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2035 3433 0.248054 GCACACAAAGTCACACACCG 60.248 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.940883 GCACATGACGTCCGGTAGGA 61.941 60.000 14.12 0.00 46.11 2.94
73 76 3.958822 GACGGCCGTCACGTACTGG 62.959 68.421 44.88 8.92 45.68 4.00
119 1380 2.896745 AAGTAAACGTTCTGGTCCGT 57.103 45.000 0.00 0.00 39.32 4.69
168 1429 2.469516 CCCAGCCATACGTTTCGGC 61.470 63.158 13.10 13.10 46.62 5.54
187 1448 2.320587 CCCACTCTTGCGCACTGTC 61.321 63.158 11.12 0.00 0.00 3.51
203 1464 2.827190 TCTCACGCCGTATCCGCT 60.827 61.111 0.00 0.00 0.00 5.52
204 1465 1.524393 TCTCACGCCGTATCCGCTA 60.524 57.895 0.00 0.00 0.00 4.26
245 1516 4.927557 TGCCAGTGCATGTTTCCT 57.072 50.000 0.00 0.00 44.23 3.36
262 1533 2.171003 TCCTGAATCACGAGAGCTGAA 58.829 47.619 0.00 0.00 0.00 3.02
283 1554 4.077184 ACGCCAGCGATTTCGGGA 62.077 61.111 20.32 0.00 42.83 5.14
316 1587 3.918220 CACCGAATCGCTGCGCTC 61.918 66.667 18.65 14.78 0.00 5.03
487 1758 4.322953 GGGGTCCGAATAACAGTTAACTGA 60.323 45.833 36.14 19.20 46.59 3.41
488 1759 4.628766 GGGTCCGAATAACAGTTAACTGAC 59.371 45.833 36.14 22.24 46.59 3.51
489 1760 4.628766 GGTCCGAATAACAGTTAACTGACC 59.371 45.833 36.14 26.17 46.59 4.02
490 1761 5.232463 GTCCGAATAACAGTTAACTGACCA 58.768 41.667 36.14 21.98 46.59 4.02
491 1762 5.873164 GTCCGAATAACAGTTAACTGACCAT 59.127 40.000 36.14 22.98 46.59 3.55
492 1763 7.037438 GTCCGAATAACAGTTAACTGACCATA 58.963 38.462 36.14 23.12 46.59 2.74
506 1777 5.892568 ACTGACCATATCGACAGTTAACTC 58.107 41.667 4.77 0.00 40.03 3.01
507 1778 5.417894 ACTGACCATATCGACAGTTAACTCA 59.582 40.000 4.77 0.00 40.03 3.41
508 1779 5.647589 TGACCATATCGACAGTTAACTCAC 58.352 41.667 4.77 1.93 0.00 3.51
509 1780 5.007385 ACCATATCGACAGTTAACTCACC 57.993 43.478 4.77 0.00 0.00 4.02
510 1781 4.042398 CCATATCGACAGTTAACTCACCG 58.958 47.826 4.77 9.50 0.00 4.94
511 1782 4.439700 CCATATCGACAGTTAACTCACCGT 60.440 45.833 4.77 0.00 0.00 4.83
512 1783 2.693797 TCGACAGTTAACTCACCGTC 57.306 50.000 4.77 9.23 0.00 4.79
623 1894 5.242615 TGTGTATGAGCAAAAAGGTTATGCA 59.757 36.000 0.00 0.00 42.45 3.96
851 2122 7.754069 TGTTTAGCAATTGCATTAATACTGC 57.246 32.000 30.89 10.36 45.16 4.40
1258 2531 2.106332 GGATACCTGCCGTGTCCG 59.894 66.667 1.78 0.00 42.23 4.79
1591 2869 3.809832 CGAGGATAAACAGCCTGTTATGG 59.190 47.826 11.10 0.00 40.14 2.74
1684 3014 6.575162 AATTTGGTATTCAAGACTGTGACC 57.425 37.500 0.00 0.00 36.62 4.02
1707 3037 3.254411 TCTTTTGCGTGTGGATTAATGCA 59.746 39.130 5.43 5.43 36.55 3.96
1747 3087 5.001232 TGTATCTTGCCGTTAAGCTTTCTT 58.999 37.500 3.20 0.00 36.35 2.52
1748 3088 4.686839 ATCTTGCCGTTAAGCTTTCTTC 57.313 40.909 3.20 0.00 33.85 2.87
1749 3089 3.472652 TCTTGCCGTTAAGCTTTCTTCA 58.527 40.909 3.20 0.00 33.85 3.02
1750 3090 3.498397 TCTTGCCGTTAAGCTTTCTTCAG 59.502 43.478 3.20 0.00 33.85 3.02
1751 3091 3.120321 TGCCGTTAAGCTTTCTTCAGA 57.880 42.857 3.20 0.00 33.85 3.27
1752 3092 3.674997 TGCCGTTAAGCTTTCTTCAGAT 58.325 40.909 3.20 0.00 33.85 2.90
1753 3093 3.436704 TGCCGTTAAGCTTTCTTCAGATG 59.563 43.478 3.20 0.00 33.85 2.90
1754 3094 3.729163 GCCGTTAAGCTTTCTTCAGATGC 60.729 47.826 3.20 0.00 33.85 3.91
1755 3095 3.686726 CCGTTAAGCTTTCTTCAGATGCT 59.313 43.478 3.20 0.56 36.35 3.79
1890 3239 5.810587 TGCTAAACCTCAAGATCGTATTGTC 59.189 40.000 0.00 0.00 0.00 3.18
1903 3262 7.005296 AGATCGTATTGTCTTGGGAGTAGTAT 58.995 38.462 0.00 0.00 0.00 2.12
1984 3382 3.119637 GGTAGTAATTGCATTTGCGGTGT 60.120 43.478 4.11 0.00 45.83 4.16
1985 3383 3.658757 AGTAATTGCATTTGCGGTGTT 57.341 38.095 4.11 0.00 45.83 3.32
1986 3384 3.574614 AGTAATTGCATTTGCGGTGTTC 58.425 40.909 4.11 0.00 45.83 3.18
1987 3385 2.522836 AATTGCATTTGCGGTGTTCA 57.477 40.000 0.00 0.00 45.83 3.18
1988 3386 2.747396 ATTGCATTTGCGGTGTTCAT 57.253 40.000 0.00 0.00 45.83 2.57
1989 3387 2.522836 TTGCATTTGCGGTGTTCATT 57.477 40.000 0.00 0.00 45.83 2.57
1990 3388 2.063156 TGCATTTGCGGTGTTCATTC 57.937 45.000 0.00 0.00 45.83 2.67
2035 3433 7.798982 GCAAGAAACAGTATTAAGAAGACACAC 59.201 37.037 0.00 0.00 0.00 3.82
2060 3458 2.097304 GTGTGACTTTGTGTGCATGACA 59.903 45.455 0.00 0.00 0.00 3.58
2105 3508 5.385628 AGAAGTATACTACTCCCTCCGTT 57.614 43.478 5.65 0.00 38.26 4.44
2106 3509 5.764432 AGAAGTATACTACTCCCTCCGTTT 58.236 41.667 5.65 0.00 38.26 3.60
2107 3510 5.827267 AGAAGTATACTACTCCCTCCGTTTC 59.173 44.000 5.65 0.00 38.26 2.78
2108 3511 5.385628 AGTATACTACTCCCTCCGTTTCT 57.614 43.478 2.75 0.00 32.47 2.52
2109 3512 6.506538 AGTATACTACTCCCTCCGTTTCTA 57.493 41.667 2.75 0.00 32.47 2.10
2110 3513 6.904626 AGTATACTACTCCCTCCGTTTCTAA 58.095 40.000 2.75 0.00 32.47 2.10
2111 3514 7.349598 AGTATACTACTCCCTCCGTTTCTAAA 58.650 38.462 2.75 0.00 32.47 1.85
2112 3515 8.003629 AGTATACTACTCCCTCCGTTTCTAAAT 58.996 37.037 2.75 0.00 32.47 1.40
2113 3516 9.289782 GTATACTACTCCCTCCGTTTCTAAATA 57.710 37.037 0.00 0.00 0.00 1.40
2114 3517 6.462552 ACTACTCCCTCCGTTTCTAAATAC 57.537 41.667 0.00 0.00 0.00 1.89
2115 3518 6.193504 ACTACTCCCTCCGTTTCTAAATACT 58.806 40.000 0.00 0.00 0.00 2.12
2116 3519 5.595257 ACTCCCTCCGTTTCTAAATACTC 57.405 43.478 0.00 0.00 0.00 2.59
2117 3520 4.405036 ACTCCCTCCGTTTCTAAATACTCC 59.595 45.833 0.00 0.00 0.00 3.85
2118 3521 3.708121 TCCCTCCGTTTCTAAATACTCCC 59.292 47.826 0.00 0.00 0.00 4.30
2119 3522 3.710165 CCCTCCGTTTCTAAATACTCCCT 59.290 47.826 0.00 0.00 0.00 4.20
2120 3523 4.163649 CCCTCCGTTTCTAAATACTCCCTT 59.836 45.833 0.00 0.00 0.00 3.95
2121 3524 5.358090 CCTCCGTTTCTAAATACTCCCTTC 58.642 45.833 0.00 0.00 0.00 3.46
2122 3525 5.002464 TCCGTTTCTAAATACTCCCTTCG 57.998 43.478 0.00 0.00 0.00 3.79
2123 3526 4.463891 TCCGTTTCTAAATACTCCCTTCGT 59.536 41.667 0.00 0.00 0.00 3.85
2124 3527 5.047092 TCCGTTTCTAAATACTCCCTTCGTT 60.047 40.000 0.00 0.00 0.00 3.85
2125 3528 5.290400 CCGTTTCTAAATACTCCCTTCGTTC 59.710 44.000 0.00 0.00 0.00 3.95
2126 3529 5.290400 CGTTTCTAAATACTCCCTTCGTTCC 59.710 44.000 0.00 0.00 0.00 3.62
2127 3530 6.404708 GTTTCTAAATACTCCCTTCGTTCCT 58.595 40.000 0.00 0.00 0.00 3.36
2128 3531 7.550712 GTTTCTAAATACTCCCTTCGTTCCTA 58.449 38.462 0.00 0.00 0.00 2.94
2129 3532 7.722949 TTCTAAATACTCCCTTCGTTCCTAA 57.277 36.000 0.00 0.00 0.00 2.69
2130 3533 7.722949 TCTAAATACTCCCTTCGTTCCTAAA 57.277 36.000 0.00 0.00 0.00 1.85
2131 3534 8.315220 TCTAAATACTCCCTTCGTTCCTAAAT 57.685 34.615 0.00 0.00 0.00 1.40
2132 3535 9.425248 TCTAAATACTCCCTTCGTTCCTAAATA 57.575 33.333 0.00 0.00 0.00 1.40
2137 3540 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2138 3541 8.087303 ACTCCCTTCGTTCCTAAATATAAGTT 57.913 34.615 0.00 0.00 0.00 2.66
2139 3542 8.546322 ACTCCCTTCGTTCCTAAATATAAGTTT 58.454 33.333 0.00 0.00 0.00 2.66
2140 3543 9.392259 CTCCCTTCGTTCCTAAATATAAGTTTT 57.608 33.333 0.00 0.00 0.00 2.43
2141 3544 9.743581 TCCCTTCGTTCCTAAATATAAGTTTTT 57.256 29.630 0.00 0.00 0.00 1.94
2161 3564 4.846779 TTTTAGGATTGCACCAAGTGAC 57.153 40.909 0.00 0.00 35.23 3.67
2162 3565 3.788227 TTAGGATTGCACCAAGTGACT 57.212 42.857 0.00 0.00 35.23 3.41
2163 3566 4.901197 TTAGGATTGCACCAAGTGACTA 57.099 40.909 0.00 0.00 35.23 2.59
2164 3567 3.059352 AGGATTGCACCAAGTGACTAC 57.941 47.619 0.00 0.00 35.23 2.73
2165 3568 2.371841 AGGATTGCACCAAGTGACTACA 59.628 45.455 0.00 0.00 35.23 2.74
2166 3569 3.009473 AGGATTGCACCAAGTGACTACAT 59.991 43.478 0.00 0.00 35.23 2.29
2167 3570 4.225042 AGGATTGCACCAAGTGACTACATA 59.775 41.667 0.00 0.00 35.23 2.29
2168 3571 4.332819 GGATTGCACCAAGTGACTACATAC 59.667 45.833 0.00 0.00 35.23 2.39
2169 3572 2.954316 TGCACCAAGTGACTACATACG 58.046 47.619 0.00 0.00 35.23 3.06
2170 3573 2.268298 GCACCAAGTGACTACATACGG 58.732 52.381 0.00 0.00 35.23 4.02
2171 3574 2.094390 GCACCAAGTGACTACATACGGA 60.094 50.000 0.00 0.00 35.23 4.69
2172 3575 3.770666 CACCAAGTGACTACATACGGAG 58.229 50.000 0.00 0.00 35.23 4.63
2173 3576 2.165845 ACCAAGTGACTACATACGGAGC 59.834 50.000 0.00 0.00 0.00 4.70
2174 3577 2.165641 CCAAGTGACTACATACGGAGCA 59.834 50.000 0.00 0.00 0.00 4.26
2175 3578 3.368013 CCAAGTGACTACATACGGAGCAA 60.368 47.826 0.00 0.00 0.00 3.91
2176 3579 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2177 3580 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2178 3581 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2179 3582 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2180 3583 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2181 3584 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
2182 3585 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
2183 3586 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
2184 3587 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2185 3588 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2186 3589 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2187 3590 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2188 3591 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2189 3592 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2190 3593 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2191 3594 5.200454 CGGAGCAAAATGAATGAATCTACG 58.800 41.667 0.00 0.00 0.00 3.51
2192 3595 4.972440 GGAGCAAAATGAATGAATCTACGC 59.028 41.667 0.00 0.00 0.00 4.42
2193 3596 5.220931 GGAGCAAAATGAATGAATCTACGCT 60.221 40.000 0.00 0.00 0.00 5.07
2194 3597 5.814783 AGCAAAATGAATGAATCTACGCTC 58.185 37.500 0.00 0.00 0.00 5.03
2195 3598 5.587844 AGCAAAATGAATGAATCTACGCTCT 59.412 36.000 0.00 0.00 0.00 4.09
2196 3599 6.763135 AGCAAAATGAATGAATCTACGCTCTA 59.237 34.615 0.00 0.00 0.00 2.43
2197 3600 7.280876 AGCAAAATGAATGAATCTACGCTCTAA 59.719 33.333 0.00 0.00 0.00 2.10
2198 3601 7.910162 GCAAAATGAATGAATCTACGCTCTAAA 59.090 33.333 0.00 0.00 0.00 1.85
2199 3602 9.773328 CAAAATGAATGAATCTACGCTCTAAAA 57.227 29.630 0.00 0.00 0.00 1.52
2204 3607 9.764363 TGAATGAATCTACGCTCTAAAATATGT 57.236 29.630 0.00 0.00 0.00 2.29
2206 3609 9.988815 AATGAATCTACGCTCTAAAATATGTCT 57.011 29.630 0.00 0.00 0.00 3.41
2208 3611 9.894783 TGAATCTACGCTCTAAAATATGTCTAC 57.105 33.333 0.00 0.00 0.00 2.59
2209 3612 9.894783 GAATCTACGCTCTAAAATATGTCTACA 57.105 33.333 0.00 0.00 0.00 2.74
2215 3618 9.982651 ACGCTCTAAAATATGTCTACATACATT 57.017 29.630 4.98 6.30 41.15 2.71
2271 3674 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
2272 3675 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
2273 3676 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
2274 3677 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
2275 3678 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
2276 3679 9.377238 ACTTATATTTAGAAACGGAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
2280 3683 7.672122 ATTTAGAAACGGAGGGAGTATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2281 3684 6.705863 TTAGAAACGGAGGGAGTATAAGTC 57.294 41.667 0.00 0.00 0.00 3.01
2282 3685 4.869451 AGAAACGGAGGGAGTATAAGTCT 58.131 43.478 0.00 0.00 0.00 3.24
2283 3686 5.270794 AGAAACGGAGGGAGTATAAGTCTT 58.729 41.667 0.00 0.00 0.00 3.01
2284 3687 5.720520 AGAAACGGAGGGAGTATAAGTCTTT 59.279 40.000 0.00 0.00 0.00 2.52
2285 3688 6.894103 AGAAACGGAGGGAGTATAAGTCTTTA 59.106 38.462 0.00 0.00 0.00 1.85
2286 3689 7.398332 AGAAACGGAGGGAGTATAAGTCTTTAA 59.602 37.037 0.00 0.00 0.00 1.52
2287 3690 6.712179 ACGGAGGGAGTATAAGTCTTTAAG 57.288 41.667 0.00 0.00 0.00 1.85
2288 3691 6.430007 ACGGAGGGAGTATAAGTCTTTAAGA 58.570 40.000 0.00 0.00 0.00 2.10
2289 3692 6.546772 ACGGAGGGAGTATAAGTCTTTAAGAG 59.453 42.308 0.00 0.00 0.00 2.85
2290 3693 6.771749 CGGAGGGAGTATAAGTCTTTAAGAGA 59.228 42.308 0.00 0.00 0.00 3.10
2291 3694 7.449086 CGGAGGGAGTATAAGTCTTTAAGAGAT 59.551 40.741 0.00 0.00 36.61 2.75
2292 3695 9.150028 GGAGGGAGTATAAGTCTTTAAGAGATT 57.850 37.037 0.00 0.00 36.61 2.40
2304 3707 9.620259 AGTCTTTAAGAGATTTCATTATGGACC 57.380 33.333 0.00 0.00 36.61 4.46
2305 3708 9.396022 GTCTTTAAGAGATTTCATTATGGACCA 57.604 33.333 0.00 0.00 36.61 4.02
2306 3709 9.396022 TCTTTAAGAGATTTCATTATGGACCAC 57.604 33.333 0.00 0.00 0.00 4.16
2307 3710 9.177608 CTTTAAGAGATTTCATTATGGACCACA 57.822 33.333 0.00 0.00 0.00 4.17
2308 3711 9.699410 TTTAAGAGATTTCATTATGGACCACAT 57.301 29.630 0.00 0.00 43.68 3.21
2310 3713 8.682936 AAGAGATTTCATTATGGACCACATAC 57.317 34.615 0.00 0.00 41.61 2.39
2311 3714 6.931281 AGAGATTTCATTATGGACCACATACG 59.069 38.462 0.00 0.00 41.61 3.06
2312 3715 5.997746 AGATTTCATTATGGACCACATACGG 59.002 40.000 0.00 0.00 41.61 4.02
2313 3716 5.360649 TTTCATTATGGACCACATACGGA 57.639 39.130 0.00 0.00 41.61 4.69
2314 3717 4.600692 TCATTATGGACCACATACGGAG 57.399 45.455 0.00 0.00 41.61 4.63
2315 3718 2.902705 TTATGGACCACATACGGAGC 57.097 50.000 0.00 0.00 41.61 4.70
2316 3719 1.783071 TATGGACCACATACGGAGCA 58.217 50.000 0.00 0.00 41.03 4.26
2317 3720 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
2318 3721 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
2319 3722 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
2320 3723 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
2321 3724 3.055021 TGGACCACATACGGAGCAAAATA 60.055 43.478 0.00 0.00 0.00 1.40
2322 3725 3.942748 GGACCACATACGGAGCAAAATAA 59.057 43.478 0.00 0.00 0.00 1.40
2323 3726 4.035208 GGACCACATACGGAGCAAAATAAG 59.965 45.833 0.00 0.00 0.00 1.73
2324 3727 4.585879 ACCACATACGGAGCAAAATAAGT 58.414 39.130 0.00 0.00 0.00 2.24
2325 3728 4.394920 ACCACATACGGAGCAAAATAAGTG 59.605 41.667 0.00 0.00 0.00 3.16
2326 3729 4.634004 CCACATACGGAGCAAAATAAGTGA 59.366 41.667 0.00 0.00 0.00 3.41
2327 3730 5.123186 CCACATACGGAGCAAAATAAGTGAA 59.877 40.000 0.00 0.00 0.00 3.18
2328 3731 6.183360 CCACATACGGAGCAAAATAAGTGAAT 60.183 38.462 0.00 0.00 0.00 2.57
2329 3732 6.907212 CACATACGGAGCAAAATAAGTGAATC 59.093 38.462 0.00 0.00 0.00 2.52
2330 3733 6.823689 ACATACGGAGCAAAATAAGTGAATCT 59.176 34.615 0.00 0.00 0.00 2.40
2331 3734 7.985184 ACATACGGAGCAAAATAAGTGAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
2332 3735 6.663944 ACGGAGCAAAATAAGTGAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
2333 3736 6.170506 ACGGAGCAAAATAAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
2334 3737 6.092259 ACGGAGCAAAATAAGTGAATCTACAC 59.908 38.462 0.00 0.00 40.60 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 73 2.317609 CCGTGGAACAGTTCGCCAG 61.318 63.158 7.22 0.00 41.80 4.85
73 76 2.665185 AGCCGTGGAACAGTTCGC 60.665 61.111 7.22 5.12 41.80 4.70
119 1380 3.614806 GCCGATTTTCATGGGCCA 58.385 55.556 9.61 9.61 46.23 5.36
145 1406 3.675619 AACGTATGGCTGGGCGTCC 62.676 63.158 0.00 0.00 36.51 4.79
158 1419 1.474332 AAGAGTGGGGCCGAAACGTA 61.474 55.000 0.00 0.00 0.00 3.57
168 1429 3.052082 CAGTGCGCAAGAGTGGGG 61.052 66.667 14.00 0.00 38.13 4.96
245 1516 1.402852 CGGTTCAGCTCTCGTGATTCA 60.403 52.381 0.00 0.00 0.00 2.57
262 1533 2.813908 GAAATCGCTGGCGTCGGT 60.814 61.111 14.55 0.00 40.74 4.69
274 1545 1.821332 CCCAGCTGCTCCCGAAATC 60.821 63.158 8.66 0.00 0.00 2.17
404 1675 4.941873 GGTAGGTCCAGTTAATTTGTCTGG 59.058 45.833 13.54 13.54 46.94 3.86
486 1757 5.041940 GGTGAGTTAACTGTCGATATGGTC 58.958 45.833 14.14 0.00 0.00 4.02
487 1758 4.439700 CGGTGAGTTAACTGTCGATATGGT 60.440 45.833 14.14 0.00 0.00 3.55
488 1759 4.042398 CGGTGAGTTAACTGTCGATATGG 58.958 47.826 14.14 0.00 0.00 2.74
489 1760 4.669318 ACGGTGAGTTAACTGTCGATATG 58.331 43.478 14.14 0.00 34.48 1.78
490 1761 4.918037 GACGGTGAGTTAACTGTCGATAT 58.082 43.478 14.14 0.00 44.29 1.63
491 1762 4.346734 GACGGTGAGTTAACTGTCGATA 57.653 45.455 14.14 0.00 44.29 2.92
492 1763 3.213249 GACGGTGAGTTAACTGTCGAT 57.787 47.619 14.14 5.08 44.29 3.59
510 1781 3.374058 CCACTGTTCCAAATATCGGTGAC 59.626 47.826 0.00 0.00 38.86 3.67
511 1782 3.605634 CCACTGTTCCAAATATCGGTGA 58.394 45.455 0.00 0.00 38.86 4.02
512 1783 2.097466 GCCACTGTTCCAAATATCGGTG 59.903 50.000 0.00 0.00 37.06 4.94
565 1836 5.098211 GGTAAGAATCTTGATTTGCACAGC 58.902 41.667 5.64 0.00 0.00 4.40
623 1894 4.536489 ACAAGGAGCTATACCAGGAAACTT 59.464 41.667 0.00 0.00 40.21 2.66
722 1993 4.683781 TGAAATCAATAGCGGTTGCAAAAC 59.316 37.500 0.00 0.00 46.23 2.43
730 2001 6.825721 AGAAAGAGAATGAAATCAATAGCGGT 59.174 34.615 0.00 0.00 0.00 5.68
764 2035 4.437255 GCGACAGTGCATGATAAATTGACA 60.437 41.667 0.00 0.00 34.15 3.58
804 2075 8.098220 ACAATTCATAAAACAAATTCTTGCCC 57.902 30.769 0.00 0.00 35.84 5.36
851 2122 4.872691 GGATACAGAACACACTGAGGAATG 59.127 45.833 0.00 0.00 40.63 2.67
960 2233 0.238289 CAAGGTAACAAGCAGCACGG 59.762 55.000 0.00 0.00 41.41 4.94
1233 2506 1.338136 CGGCAGGTATCCCCTTGAGT 61.338 60.000 0.00 0.00 42.73 3.41
1258 2531 2.495270 TCTGCTCTCTCTTCATGTGGAC 59.505 50.000 0.00 0.00 0.00 4.02
1535 2810 5.900425 TGCTACTGCAGATTTGTTTCAAAA 58.100 33.333 23.35 0.00 45.31 2.44
1591 2869 4.579270 CGTTACATTTCGGAGAGGAAAC 57.421 45.455 0.00 0.00 38.61 2.78
1684 3014 3.853671 GCATTAATCCACACGCAAAAGAG 59.146 43.478 0.00 0.00 0.00 2.85
1984 3382 5.416639 CAGGGACATGACAATGAAGAATGAA 59.583 40.000 0.00 0.00 37.24 2.57
1985 3383 4.945543 CAGGGACATGACAATGAAGAATGA 59.054 41.667 0.00 0.00 37.24 2.57
1986 3384 4.097437 CCAGGGACATGACAATGAAGAATG 59.903 45.833 0.00 0.00 37.24 2.67
1987 3385 4.275810 CCAGGGACATGACAATGAAGAAT 58.724 43.478 0.00 0.00 37.24 2.40
1988 3386 3.689347 CCAGGGACATGACAATGAAGAA 58.311 45.455 0.00 0.00 37.24 2.52
1989 3387 2.618816 GCCAGGGACATGACAATGAAGA 60.619 50.000 0.00 0.00 37.24 2.87
1990 3388 1.747355 GCCAGGGACATGACAATGAAG 59.253 52.381 0.00 0.00 37.24 3.02
2035 3433 0.248054 GCACACAAAGTCACACACCG 60.248 55.000 0.00 0.00 0.00 4.94
2105 3508 7.722949 TTAGGAACGAAGGGAGTATTTAGAA 57.277 36.000 0.00 0.00 0.00 2.10
2106 3509 7.722949 TTTAGGAACGAAGGGAGTATTTAGA 57.277 36.000 0.00 0.00 0.00 2.10
2111 3514 9.377238 ACTTATATTTAGGAACGAAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
2112 3515 8.773033 ACTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
2113 3516 7.672122 ACTTATATTTAGGAACGAAGGGAGT 57.328 36.000 0.00 0.00 0.00 3.85
2114 3517 8.959705 AAACTTATATTTAGGAACGAAGGGAG 57.040 34.615 0.00 0.00 0.00 4.30
2115 3518 9.743581 AAAAACTTATATTTAGGAACGAAGGGA 57.256 29.630 0.00 0.00 0.00 4.20
2139 3542 4.892934 AGTCACTTGGTGCAATCCTAAAAA 59.107 37.500 0.00 0.00 32.98 1.94
2140 3543 4.469657 AGTCACTTGGTGCAATCCTAAAA 58.530 39.130 0.00 0.00 32.98 1.52
2141 3544 4.098914 AGTCACTTGGTGCAATCCTAAA 57.901 40.909 0.00 0.00 32.98 1.85
2142 3545 3.788227 AGTCACTTGGTGCAATCCTAA 57.212 42.857 0.00 0.00 32.98 2.69
2143 3546 3.580895 TGTAGTCACTTGGTGCAATCCTA 59.419 43.478 0.00 0.00 32.98 2.94
2144 3547 2.371841 TGTAGTCACTTGGTGCAATCCT 59.628 45.455 0.00 0.00 32.98 3.24
2145 3548 2.778299 TGTAGTCACTTGGTGCAATCC 58.222 47.619 0.00 0.00 32.98 3.01
2146 3549 4.032900 CGTATGTAGTCACTTGGTGCAATC 59.967 45.833 0.00 0.00 32.98 2.67
2147 3550 3.932710 CGTATGTAGTCACTTGGTGCAAT 59.067 43.478 0.00 0.00 32.98 3.56
2148 3551 3.322369 CGTATGTAGTCACTTGGTGCAA 58.678 45.455 0.00 0.00 32.98 4.08
2149 3552 2.353307 CCGTATGTAGTCACTTGGTGCA 60.353 50.000 0.00 0.00 32.98 4.57
2150 3553 2.094390 TCCGTATGTAGTCACTTGGTGC 60.094 50.000 0.00 0.00 32.98 5.01
2151 3554 3.770666 CTCCGTATGTAGTCACTTGGTG 58.229 50.000 0.00 0.00 34.45 4.17
2152 3555 2.165845 GCTCCGTATGTAGTCACTTGGT 59.834 50.000 0.00 0.00 0.00 3.67
2153 3556 2.165641 TGCTCCGTATGTAGTCACTTGG 59.834 50.000 0.00 0.00 0.00 3.61
2154 3557 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2155 3558 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2156 3559 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2157 3560 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2158 3561 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2159 3562 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2160 3563 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2161 3564 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2162 3565 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2163 3566 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2164 3567 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2165 3568 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2166 3569 6.019075 CGTAGATTCATTCATTTTGCTCCGTA 60.019 38.462 0.00 0.00 0.00 4.02
2167 3570 5.220662 CGTAGATTCATTCATTTTGCTCCGT 60.221 40.000 0.00 0.00 0.00 4.69
2168 3571 5.200454 CGTAGATTCATTCATTTTGCTCCG 58.800 41.667 0.00 0.00 0.00 4.63
2169 3572 4.972440 GCGTAGATTCATTCATTTTGCTCC 59.028 41.667 0.00 0.00 0.00 4.70
2170 3573 5.814783 AGCGTAGATTCATTCATTTTGCTC 58.185 37.500 0.00 0.00 0.00 4.26
2171 3574 5.587844 AGAGCGTAGATTCATTCATTTTGCT 59.412 36.000 0.00 0.00 0.00 3.91
2172 3575 5.814783 AGAGCGTAGATTCATTCATTTTGC 58.185 37.500 0.00 0.00 0.00 3.68
2173 3576 9.773328 TTTTAGAGCGTAGATTCATTCATTTTG 57.227 29.630 0.00 0.00 0.00 2.44
2178 3581 9.764363 ACATATTTTAGAGCGTAGATTCATTCA 57.236 29.630 0.00 0.00 0.00 2.57
2180 3583 9.988815 AGACATATTTTAGAGCGTAGATTCATT 57.011 29.630 0.00 0.00 0.00 2.57
2182 3585 9.894783 GTAGACATATTTTAGAGCGTAGATTCA 57.105 33.333 0.00 0.00 0.00 2.57
2183 3586 9.894783 TGTAGACATATTTTAGAGCGTAGATTC 57.105 33.333 0.00 0.00 0.00 2.52
2189 3592 9.982651 AATGTATGTAGACATATTTTAGAGCGT 57.017 29.630 5.69 0.00 39.16 5.07
2245 3648 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2246 3649 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2247 3650 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2248 3651 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2249 3652 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2250 3653 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2254 3657 9.377238 ACTTATACTCCCTCCGTTTCTAAATAT 57.623 33.333 0.00 0.00 0.00 1.28
2255 3658 8.773033 ACTTATACTCCCTCCGTTTCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
2256 3659 7.564292 AGACTTATACTCCCTCCGTTTCTAAAT 59.436 37.037 0.00 0.00 0.00 1.40
2257 3660 6.894103 AGACTTATACTCCCTCCGTTTCTAAA 59.106 38.462 0.00 0.00 0.00 1.85
2258 3661 6.430007 AGACTTATACTCCCTCCGTTTCTAA 58.570 40.000 0.00 0.00 0.00 2.10
2259 3662 6.011122 AGACTTATACTCCCTCCGTTTCTA 57.989 41.667 0.00 0.00 0.00 2.10
2260 3663 4.869451 AGACTTATACTCCCTCCGTTTCT 58.131 43.478 0.00 0.00 0.00 2.52
2261 3664 5.595257 AAGACTTATACTCCCTCCGTTTC 57.405 43.478 0.00 0.00 0.00 2.78
2262 3665 7.398332 TCTTAAAGACTTATACTCCCTCCGTTT 59.602 37.037 0.00 0.00 0.00 3.60
2263 3666 6.894103 TCTTAAAGACTTATACTCCCTCCGTT 59.106 38.462 0.00 0.00 0.00 4.44
2264 3667 6.430007 TCTTAAAGACTTATACTCCCTCCGT 58.570 40.000 0.00 0.00 0.00 4.69
2265 3668 6.771749 TCTCTTAAAGACTTATACTCCCTCCG 59.228 42.308 0.00 0.00 0.00 4.63
2266 3669 8.715190 ATCTCTTAAAGACTTATACTCCCTCC 57.285 38.462 0.00 0.00 36.65 4.30
2278 3681 9.620259 GGTCCATAATGAAATCTCTTAAAGACT 57.380 33.333 0.00 0.00 36.65 3.24
2279 3682 9.396022 TGGTCCATAATGAAATCTCTTAAAGAC 57.604 33.333 0.00 0.00 36.65 3.01
2280 3683 9.396022 GTGGTCCATAATGAAATCTCTTAAAGA 57.604 33.333 0.00 0.00 38.72 2.52
2281 3684 9.177608 TGTGGTCCATAATGAAATCTCTTAAAG 57.822 33.333 0.00 0.00 0.00 1.85
2282 3685 9.699410 ATGTGGTCCATAATGAAATCTCTTAAA 57.301 29.630 0.00 0.00 29.82 1.52
2284 3687 9.778741 GTATGTGGTCCATAATGAAATCTCTTA 57.221 33.333 0.00 0.00 37.77 2.10
2285 3688 7.442364 CGTATGTGGTCCATAATGAAATCTCTT 59.558 37.037 0.00 0.00 37.77 2.85
2286 3689 6.931281 CGTATGTGGTCCATAATGAAATCTCT 59.069 38.462 0.00 0.00 37.77 3.10
2287 3690 6.147821 CCGTATGTGGTCCATAATGAAATCTC 59.852 42.308 0.00 0.00 37.77 2.75
2288 3691 5.997746 CCGTATGTGGTCCATAATGAAATCT 59.002 40.000 0.00 0.00 37.77 2.40
2289 3692 5.995282 TCCGTATGTGGTCCATAATGAAATC 59.005 40.000 0.00 0.00 37.77 2.17
2290 3693 5.935945 TCCGTATGTGGTCCATAATGAAAT 58.064 37.500 0.00 0.00 37.77 2.17
2291 3694 5.360649 TCCGTATGTGGTCCATAATGAAA 57.639 39.130 0.00 0.00 37.77 2.69
2292 3695 4.742440 GCTCCGTATGTGGTCCATAATGAA 60.742 45.833 0.00 0.00 37.77 2.57
2293 3696 3.244078 GCTCCGTATGTGGTCCATAATGA 60.244 47.826 0.00 0.00 37.77 2.57
2294 3697 3.067106 GCTCCGTATGTGGTCCATAATG 58.933 50.000 0.00 0.00 37.77 1.90
2295 3698 2.703536 TGCTCCGTATGTGGTCCATAAT 59.296 45.455 0.00 0.00 37.77 1.28
2296 3699 2.112190 TGCTCCGTATGTGGTCCATAA 58.888 47.619 0.00 0.00 37.77 1.90
2297 3700 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
2298 3701 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
2299 3702 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
2300 3703 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
2301 3704 4.634443 ACTTATTTTGCTCCGTATGTGGTC 59.366 41.667 0.00 0.00 0.00 4.02
2302 3705 4.394920 CACTTATTTTGCTCCGTATGTGGT 59.605 41.667 0.00 0.00 0.00 4.16
2303 3706 4.634004 TCACTTATTTTGCTCCGTATGTGG 59.366 41.667 0.00 0.00 0.00 4.17
2304 3707 5.794687 TCACTTATTTTGCTCCGTATGTG 57.205 39.130 0.00 0.00 0.00 3.21
2305 3708 6.823689 AGATTCACTTATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
2306 3709 7.251704 AGATTCACTTATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
2307 3710 7.985184 TGTAGATTCACTTATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
2308 3711 7.277098 GTGTAGATTCACTTATTTTGCTCCGTA 59.723 37.037 0.00 0.00 35.68 4.02
2309 3712 6.092259 GTGTAGATTCACTTATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
2310 3713 6.313905 AGTGTAGATTCACTTATTTTGCTCCG 59.686 38.462 0.00 0.00 44.92 4.63
2311 3714 7.617041 AGTGTAGATTCACTTATTTTGCTCC 57.383 36.000 0.00 0.00 44.92 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.