Multiple sequence alignment - TraesCS3D01G180300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G180300 chr3D 100.000 3743 0 0 1 3743 162184856 162181114 0.000000e+00 6913.0
1 TraesCS3D01G180300 chr3D 97.465 355 8 1 3258 3612 538295077 538294724 4.140000e-169 604.0
2 TraesCS3D01G180300 chr3D 95.294 170 8 0 1591 1760 162183101 162182932 1.710000e-68 270.0
3 TraesCS3D01G180300 chr3D 95.294 170 8 0 1756 1925 162183266 162183097 1.710000e-68 270.0
4 TraesCS3D01G180300 chr3D 95.455 110 4 1 2322 2430 162182431 162182322 1.380000e-39 174.0
5 TraesCS3D01G180300 chr3D 95.455 110 4 1 2426 2535 162182535 162182427 1.380000e-39 174.0
6 TraesCS3D01G180300 chr3A 96.958 2433 57 4 846 3262 192857588 192855157 0.000000e+00 4067.0
7 TraesCS3D01G180300 chr3A 85.906 298 33 4 570 861 192857898 192857604 3.630000e-80 309.0
8 TraesCS3D01G180300 chr3A 95.294 170 8 0 1591 1760 192856667 192856498 1.710000e-68 270.0
9 TraesCS3D01G180300 chr3A 97.857 140 3 0 3604 3743 192855165 192855026 3.740000e-60 243.0
10 TraesCS3D01G180300 chr3A 89.560 182 7 1 1756 1925 192856844 192856663 1.750000e-53 220.0
11 TraesCS3D01G180300 chr3A 97.143 105 3 0 2431 2535 192856094 192855990 1.070000e-40 178.0
12 TraesCS3D01G180300 chr3A 95.455 110 4 1 2322 2430 192855994 192855885 1.380000e-39 174.0
13 TraesCS3D01G180300 chr3B 94.401 1929 83 9 7 1925 239256418 239254505 0.000000e+00 2940.0
14 TraesCS3D01G180300 chr3B 96.296 945 35 0 1591 2535 239254674 239253730 0.000000e+00 1552.0
15 TraesCS3D01G180300 chr3B 95.754 942 26 5 2323 3262 239253838 239252909 0.000000e+00 1506.0
16 TraesCS3D01G180300 chr3B 94.118 170 10 0 1756 1925 239254839 239254670 3.710000e-65 259.0
17 TraesCS3D01G180300 chr3B 92.941 170 12 0 1591 1760 239254509 239254340 8.030000e-62 248.0
18 TraesCS3D01G180300 chr3B 96.364 110 3 1 2322 2430 239253734 239253625 2.970000e-41 180.0
19 TraesCS3D01G180300 chr3B 96.226 106 4 0 3604 3709 239252917 239252812 1.380000e-39 174.0
20 TraesCS3D01G180300 chr3B 94.545 110 5 1 2426 2535 239253943 239253835 6.430000e-38 169.0
21 TraesCS3D01G180300 chr4D 98.300 353 4 2 3259 3611 67180810 67180460 5.310000e-173 617.0
22 TraesCS3D01G180300 chr4D 97.465 355 8 1 3258 3612 51888699 51888346 4.140000e-169 604.0
23 TraesCS3D01G180300 chr2D 97.486 358 8 1 3253 3610 472431105 472431461 8.890000e-171 610.0
24 TraesCS3D01G180300 chr1A 98.011 352 6 1 3258 3609 147500056 147500406 8.890000e-171 610.0
25 TraesCS3D01G180300 chr1A 83.505 97 16 0 570 666 165199978 165199882 1.430000e-14 91.6
26 TraesCS3D01G180300 chr1A 83.505 97 16 0 570 666 165209564 165209660 1.430000e-14 91.6
27 TraesCS3D01G180300 chr6D 97.465 355 8 1 3258 3612 320858929 320858576 4.140000e-169 604.0
28 TraesCS3D01G180300 chr5D 97.465 355 8 1 3258 3612 50233300 50233653 4.140000e-169 604.0
29 TraesCS3D01G180300 chr5D 97.465 355 8 1 3258 3612 50243723 50244076 4.140000e-169 604.0
30 TraesCS3D01G180300 chr5D 97.465 355 8 1 3258 3612 383195266 383194913 4.140000e-169 604.0
31 TraesCS3D01G180300 chr7D 79.888 358 63 8 993 1346 234126672 234127024 1.730000e-63 254.0
32 TraesCS3D01G180300 chr7A 79.494 356 68 4 993 1346 247062749 247063101 8.030000e-62 248.0
33 TraesCS3D01G180300 chr7B 80.119 337 62 5 993 1327 205714863 205715196 2.890000e-61 246.0
34 TraesCS3D01G180300 chr7B 83.838 99 12 3 570 666 111208195 111208099 1.430000e-14 91.6
35 TraesCS3D01G180300 chrUn 83.838 99 12 3 570 666 223953621 223953717 1.430000e-14 91.6
36 TraesCS3D01G180300 chr5B 83.505 97 16 0 570 666 416280193 416280097 1.430000e-14 91.6
37 TraesCS3D01G180300 chr5A 83.838 99 12 3 570 666 296440150 296440054 1.430000e-14 91.6
38 TraesCS3D01G180300 chr1B 83.505 97 16 0 570 666 667557051 667557147 1.430000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G180300 chr3D 162181114 162184856 3742 True 1560.200000 6913 96.299600 1 3743 5 chr3D.!!$R2 3742
1 TraesCS3D01G180300 chr3A 192855026 192857898 2872 True 780.142857 4067 94.024714 570 3743 7 chr3A.!!$R1 3173
2 TraesCS3D01G180300 chr3B 239252812 239256418 3606 True 878.500000 2940 95.080625 7 3709 8 chr3B.!!$R1 3702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.036010 ACACTTTGGGGATGAGCGAG 60.036 55.000 0.00 0.0 0.00 5.03 F
502 508 0.179037 GAGCCCATCAGCTGCATGTA 60.179 55.000 9.47 0.0 45.15 2.29 F
601 607 0.536260 TTTGACGGGTATGGGTACGG 59.464 55.000 0.00 0.0 0.00 4.02 F
626 632 1.056660 GGGTGAGTTGAAGGAGGACA 58.943 55.000 0.00 0.0 0.00 4.02 F
642 648 1.344701 GGACAGGTAAGGGTATGGGGA 60.345 57.143 0.00 0.0 0.00 4.81 F
2523 2840 0.903942 GCAATGGGGATTTGCTTGGA 59.096 50.000 1.36 0.0 44.71 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1597 0.392193 CACTGCAGCCACCTTCCTAG 60.392 60.000 15.27 0.0 0.00 3.02 R
1589 1633 1.135960 CTCCTTCTCCCCATCTTCCC 58.864 60.000 0.00 0.0 0.00 3.97 R
2056 2265 1.592223 CTCTGGACCCCGTCTTCAC 59.408 63.158 0.00 0.0 32.47 3.18 R
2082 2291 1.880646 GCCGCTCTTGTAAACCTTCCA 60.881 52.381 0.00 0.0 0.00 3.53 R
2580 2897 2.422479 CTGCAATGTCATGGTCTCAAGG 59.578 50.000 0.00 0.0 0.00 3.61 R
3525 3843 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.022416 GCATGATTTCTTGTAACACCACCA 60.022 41.667 0.00 0.00 0.00 4.17
45 46 5.187967 CCAGGTCCTCTAAAATGTGTCTACT 59.812 44.000 0.00 0.00 0.00 2.57
46 47 6.102663 CAGGTCCTCTAAAATGTGTCTACTG 58.897 44.000 0.00 0.00 0.00 2.74
47 48 4.870991 GGTCCTCTAAAATGTGTCTACTGC 59.129 45.833 0.00 0.00 0.00 4.40
48 49 5.479306 GTCCTCTAAAATGTGTCTACTGCA 58.521 41.667 0.00 0.00 0.00 4.41
60 61 4.511454 GTGTCTACTGCAAATGAACACAGA 59.489 41.667 11.81 0.00 34.25 3.41
72 73 3.937814 TGAACACAGACTGTCACTTGTT 58.062 40.909 16.65 16.65 30.29 2.83
86 87 1.603802 ACTTGTTGACAATCTGGTGCG 59.396 47.619 0.00 0.00 35.02 5.34
90 91 1.068333 GTTGACAATCTGGTGCGCAAT 60.068 47.619 14.00 0.00 0.00 3.56
138 139 3.417690 AGCGTAGATCTTGAACGGTAC 57.582 47.619 17.14 2.81 44.55 3.34
143 144 5.745294 GCGTAGATCTTGAACGGTACATTAA 59.255 40.000 16.15 0.00 37.12 1.40
144 145 6.420008 GCGTAGATCTTGAACGGTACATTAAT 59.580 38.462 16.15 0.00 37.12 1.40
145 146 7.358187 GCGTAGATCTTGAACGGTACATTAATC 60.358 40.741 16.15 0.00 37.12 1.75
178 179 5.220854 CGACCTAACATGTTTGATGGATTCC 60.221 44.000 17.78 0.00 0.00 3.01
203 204 0.523072 CAACACTTTGGGGATGAGCG 59.477 55.000 0.00 0.00 0.00 5.03
205 206 0.036010 ACACTTTGGGGATGAGCGAG 60.036 55.000 0.00 0.00 0.00 5.03
208 209 0.179062 CTTTGGGGATGAGCGAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
224 225 3.348119 GAGAGGATCCCAAAGTTGAACC 58.652 50.000 8.55 0.00 33.66 3.62
239 240 1.144969 GAACCGCAAGATGTCAACGA 58.855 50.000 0.00 0.00 43.02 3.85
291 292 0.179094 TATCGTGGCCCTAAACGCAG 60.179 55.000 8.40 0.00 39.61 5.18
294 300 3.646715 TGGCCCTAAACGCAGGCT 61.647 61.111 0.00 0.00 46.31 4.58
296 302 1.523938 GGCCCTAAACGCAGGCTAG 60.524 63.158 0.00 0.00 46.31 3.42
318 324 2.664825 GCCTTAAACATGGCCACCA 58.335 52.632 8.16 0.00 43.11 4.17
364 370 0.329261 CCACTCTTCATGGAGGCCAA 59.671 55.000 5.01 0.00 39.87 4.52
365 371 1.457346 CACTCTTCATGGAGGCCAAC 58.543 55.000 5.01 0.00 36.95 3.77
366 372 0.036010 ACTCTTCATGGAGGCCAACG 60.036 55.000 5.01 0.00 36.95 4.10
367 373 1.372087 CTCTTCATGGAGGCCAACGC 61.372 60.000 5.01 0.00 36.95 4.84
383 389 2.046217 GCCGGGTCAACTTCCTCC 60.046 66.667 2.18 0.00 0.00 4.30
406 412 4.174762 GGAGAGAAAGCTAGTAACAACGG 58.825 47.826 0.00 0.00 0.00 4.44
453 459 1.508667 ATCCTGCCCCCACACATCAA 61.509 55.000 0.00 0.00 0.00 2.57
467 473 3.400599 ATCAACCCTAAGGCCCGCG 62.401 63.158 0.00 0.00 36.11 6.46
502 508 0.179037 GAGCCCATCAGCTGCATGTA 60.179 55.000 9.47 0.00 45.15 2.29
509 515 3.486375 CCATCAGCTGCATGTAAAACTCG 60.486 47.826 9.47 0.00 0.00 4.18
511 517 3.138304 TCAGCTGCATGTAAAACTCGTT 58.862 40.909 9.47 0.00 0.00 3.85
601 607 0.536260 TTTGACGGGTATGGGTACGG 59.464 55.000 0.00 0.00 0.00 4.02
614 620 1.262640 GGTACGGGTGATGGGTGAGT 61.263 60.000 0.00 0.00 0.00 3.41
626 632 1.056660 GGGTGAGTTGAAGGAGGACA 58.943 55.000 0.00 0.00 0.00 4.02
642 648 1.344701 GGACAGGTAAGGGTATGGGGA 60.345 57.143 0.00 0.00 0.00 4.81
677 683 4.789075 AACCCGATCGACGCGTGG 62.789 66.667 20.70 17.88 41.07 4.94
701 707 2.816689 TGATCGATCGGTTGCGTTTAT 58.183 42.857 20.03 0.00 0.00 1.40
752 761 8.352942 CCTTTTCGAGGGAATTTCCATATTTAG 58.647 37.037 17.08 5.12 42.26 1.85
990 1034 1.725169 CCCCACTTTCACTCCCCCAA 61.725 60.000 0.00 0.00 0.00 4.12
1262 1306 1.679898 CCCTCGAGCCCTTTGTTCT 59.320 57.895 6.99 0.00 0.00 3.01
1333 1377 3.480133 CCGTGTCCATCCCCTCCC 61.480 72.222 0.00 0.00 0.00 4.30
1589 1633 1.920325 TGGCTCCCCCTGAACAGAG 60.920 63.158 3.19 0.00 0.00 3.35
1646 1690 1.752833 GTGGTGGACGGAAGAAGGT 59.247 57.895 0.00 0.00 0.00 3.50
2056 2265 4.039092 CCCCTCCACCACAGCCTG 62.039 72.222 0.00 0.00 0.00 4.85
2363 2575 1.421268 TGCTTCTGACAATGAGGGTGT 59.579 47.619 0.00 0.00 0.00 4.16
2398 2610 2.547642 GGCGGAGAAGAGGAAGATGATG 60.548 54.545 0.00 0.00 0.00 3.07
2523 2840 0.903942 GCAATGGGGATTTGCTTGGA 59.096 50.000 1.36 0.00 44.71 3.53
2655 2972 0.179062 GGATGATCAACGAGGCTGCT 60.179 55.000 0.00 0.00 0.00 4.24
2796 3113 5.662456 AGAAAATAAACTAGAGTCGCTCCC 58.338 41.667 0.00 0.00 0.00 4.30
2860 3178 5.106078 GCGTTTGTCCTTTTGGGTAATATGA 60.106 40.000 0.00 0.00 40.87 2.15
2970 3288 1.318576 GTGGGTTTCAGGAAGGTGTG 58.681 55.000 0.00 0.00 0.00 3.82
3172 3490 6.935167 TGTCAGAGTGCTATTCTTTGTATGA 58.065 36.000 0.00 0.00 0.00 2.15
3173 3491 7.386059 TGTCAGAGTGCTATTCTTTGTATGAA 58.614 34.615 0.00 0.00 0.00 2.57
3258 3576 3.788227 TGTAACAATTGTGAGCCCTCT 57.212 42.857 12.82 0.00 0.00 3.69
3259 3577 4.901197 TGTAACAATTGTGAGCCCTCTA 57.099 40.909 12.82 0.00 0.00 2.43
3260 3578 5.235850 TGTAACAATTGTGAGCCCTCTAA 57.764 39.130 12.82 0.00 0.00 2.10
3261 3579 5.245531 TGTAACAATTGTGAGCCCTCTAAG 58.754 41.667 12.82 0.00 0.00 2.18
3262 3580 4.640771 AACAATTGTGAGCCCTCTAAGA 57.359 40.909 12.82 0.00 0.00 2.10
3263 3581 4.213564 ACAATTGTGAGCCCTCTAAGAG 57.786 45.455 11.07 0.00 0.00 2.85
3273 3591 1.573108 CCTCTAAGAGGGTGCTTGGA 58.427 55.000 0.00 0.00 45.43 3.53
3274 3592 2.122768 CCTCTAAGAGGGTGCTTGGAT 58.877 52.381 0.00 0.00 45.43 3.41
3275 3593 3.309296 CCTCTAAGAGGGTGCTTGGATA 58.691 50.000 0.00 0.00 45.43 2.59
3276 3594 3.070302 CCTCTAAGAGGGTGCTTGGATAC 59.930 52.174 0.00 0.00 45.43 2.24
3277 3595 2.693591 TCTAAGAGGGTGCTTGGATACG 59.306 50.000 0.00 0.00 42.51 3.06
3278 3596 1.276622 AAGAGGGTGCTTGGATACGT 58.723 50.000 0.00 0.00 42.51 3.57
3279 3597 1.276622 AGAGGGTGCTTGGATACGTT 58.723 50.000 0.00 0.00 42.51 3.99
3280 3598 1.628846 AGAGGGTGCTTGGATACGTTT 59.371 47.619 0.00 0.00 42.51 3.60
3281 3599 2.039879 AGAGGGTGCTTGGATACGTTTT 59.960 45.455 0.00 0.00 42.51 2.43
3282 3600 3.262405 AGAGGGTGCTTGGATACGTTTTA 59.738 43.478 0.00 0.00 42.51 1.52
3283 3601 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
3284 3602 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
3285 3603 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
3286 3604 4.251268 GGTGCTTGGATACGTTTTAGTCT 58.749 43.478 0.00 0.00 42.51 3.24
3287 3605 4.329256 GGTGCTTGGATACGTTTTAGTCTC 59.671 45.833 0.00 0.00 42.51 3.36
3288 3606 4.927425 GTGCTTGGATACGTTTTAGTCTCA 59.073 41.667 0.00 0.00 42.51 3.27
3289 3607 5.581085 GTGCTTGGATACGTTTTAGTCTCAT 59.419 40.000 0.00 0.00 42.51 2.90
3290 3608 5.580691 TGCTTGGATACGTTTTAGTCTCATG 59.419 40.000 0.00 0.00 42.51 3.07
3291 3609 5.810587 GCTTGGATACGTTTTAGTCTCATGA 59.189 40.000 0.00 0.00 42.51 3.07
3292 3610 6.237861 GCTTGGATACGTTTTAGTCTCATGAC 60.238 42.308 0.00 0.00 41.21 3.06
3294 3612 7.634671 TGGATACGTTTTAGTCTCATGACTA 57.365 36.000 0.00 2.20 46.46 2.59
3306 3624 6.282199 GTCTCATGACTAAAAGTAGTGGGA 57.718 41.667 0.00 0.00 40.82 4.37
3307 3625 6.100668 GTCTCATGACTAAAAGTAGTGGGAC 58.899 44.000 0.00 7.84 40.82 4.46
3308 3626 6.017192 TCTCATGACTAAAAGTAGTGGGACT 58.983 40.000 0.00 0.00 40.82 3.85
3309 3627 7.122353 GTCTCATGACTAAAAGTAGTGGGACTA 59.878 40.741 13.07 0.00 40.82 2.59
3310 3628 7.672660 TCTCATGACTAAAAGTAGTGGGACTAA 59.327 37.037 0.00 0.00 40.82 2.24
3311 3629 8.197592 TCATGACTAAAAGTAGTGGGACTAAA 57.802 34.615 0.00 0.00 40.82 1.85
3312 3630 8.653191 TCATGACTAAAAGTAGTGGGACTAAAA 58.347 33.333 0.00 0.00 40.82 1.52
3313 3631 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
3314 3632 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
3315 3633 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
3316 3634 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
3317 3635 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
3318 3636 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
3319 3637 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
3320 3638 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
3321 3639 3.676093 AGTGGGACTAAAACTTGCTAGC 58.324 45.455 8.10 8.10 0.00 3.42
3322 3640 2.747989 GTGGGACTAAAACTTGCTAGCC 59.252 50.000 13.29 0.00 0.00 3.93
3323 3641 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
3324 3642 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
3325 3643 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
3326 3644 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
3327 3645 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
3328 3646 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
3329 3647 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
3330 3648 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
3331 3649 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
3332 3650 1.077501 TTGCTAGCCTCACCCATGC 60.078 57.895 13.29 0.00 0.00 4.06
3333 3651 1.565390 TTGCTAGCCTCACCCATGCT 61.565 55.000 13.29 0.00 39.10 3.79
3334 3652 1.225704 GCTAGCCTCACCCATGCTT 59.774 57.895 2.29 0.00 36.57 3.91
3335 3653 1.099879 GCTAGCCTCACCCATGCTTG 61.100 60.000 2.29 0.00 36.57 4.01
3336 3654 0.465097 CTAGCCTCACCCATGCTTGG 60.465 60.000 11.68 11.68 43.23 3.61
3337 3655 0.913934 TAGCCTCACCCATGCTTGGA 60.914 55.000 19.85 0.00 46.92 3.53
3338 3656 1.076485 GCCTCACCCATGCTTGGAT 60.076 57.895 19.85 0.00 46.92 3.41
3339 3657 1.105759 GCCTCACCCATGCTTGGATC 61.106 60.000 19.85 0.00 46.92 3.36
3340 3658 0.466922 CCTCACCCATGCTTGGATCC 60.467 60.000 19.85 4.20 46.92 3.36
3341 3659 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41
3342 3660 0.703488 TCACCCATGCTTGGATCCAA 59.297 50.000 25.53 25.53 46.92 3.53
3343 3661 1.076841 TCACCCATGCTTGGATCCAAA 59.923 47.619 26.87 14.63 46.92 3.28
3344 3662 2.112998 CACCCATGCTTGGATCCAAAT 58.887 47.619 26.87 16.27 46.92 2.32
3345 3663 3.053019 TCACCCATGCTTGGATCCAAATA 60.053 43.478 26.87 18.63 46.92 1.40
3346 3664 3.068590 CACCCATGCTTGGATCCAAATAC 59.931 47.826 26.87 19.00 46.92 1.89
3347 3665 3.052642 ACCCATGCTTGGATCCAAATACT 60.053 43.478 26.87 10.16 46.92 2.12
3348 3666 4.167892 ACCCATGCTTGGATCCAAATACTA 59.832 41.667 26.87 12.31 46.92 1.82
3349 3667 5.139727 CCCATGCTTGGATCCAAATACTAA 58.860 41.667 26.87 10.11 46.92 2.24
3350 3668 5.598005 CCCATGCTTGGATCCAAATACTAAA 59.402 40.000 26.87 8.81 46.92 1.85
3351 3669 6.239120 CCCATGCTTGGATCCAAATACTAAAG 60.239 42.308 26.87 14.21 46.92 1.85
3352 3670 6.547141 CCATGCTTGGATCCAAATACTAAAGA 59.453 38.462 26.87 1.90 46.92 2.52
3353 3671 7.255381 CCATGCTTGGATCCAAATACTAAAGAG 60.255 40.741 26.87 12.80 46.92 2.85
3354 3672 6.957631 TGCTTGGATCCAAATACTAAAGAGA 58.042 36.000 26.87 1.15 35.33 3.10
3355 3673 6.823689 TGCTTGGATCCAAATACTAAAGAGAC 59.176 38.462 26.87 8.83 35.33 3.36
3356 3674 7.051000 GCTTGGATCCAAATACTAAAGAGACT 58.949 38.462 26.87 0.00 35.33 3.24
3357 3675 8.204836 GCTTGGATCCAAATACTAAAGAGACTA 58.795 37.037 26.87 0.00 35.33 2.59
3376 3694 9.507329 AGAGACTAAAAATCAAGTTAATGAGCA 57.493 29.630 0.00 0.00 31.76 4.26
3390 3708 9.866655 AAGTTAATGAGCATTTATTATCCTCCA 57.133 29.630 0.52 0.00 32.50 3.86
3391 3709 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
3394 3712 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
3395 3713 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
3396 3714 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
3397 3715 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
3398 3716 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
3399 3717 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
3400 3718 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
3401 3719 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
3402 3720 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
3403 3721 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
3404 3722 0.704076 CCTCCAAACCCTCCAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
3405 3723 1.341383 CCTCCAAACCCTCCAATCCAG 60.341 57.143 0.00 0.00 0.00 3.86
3406 3724 1.635487 CTCCAAACCCTCCAATCCAGA 59.365 52.381 0.00 0.00 0.00 3.86
3407 3725 2.041620 CTCCAAACCCTCCAATCCAGAA 59.958 50.000 0.00 0.00 0.00 3.02
3408 3726 2.171003 CCAAACCCTCCAATCCAGAAC 58.829 52.381 0.00 0.00 0.00 3.01
3409 3727 2.225117 CCAAACCCTCCAATCCAGAACT 60.225 50.000 0.00 0.00 0.00 3.01
3410 3728 3.084786 CAAACCCTCCAATCCAGAACTC 58.915 50.000 0.00 0.00 0.00 3.01
3411 3729 0.905357 ACCCTCCAATCCAGAACTCG 59.095 55.000 0.00 0.00 0.00 4.18
3412 3730 0.462759 CCCTCCAATCCAGAACTCGC 60.463 60.000 0.00 0.00 0.00 5.03
3413 3731 0.250234 CCTCCAATCCAGAACTCGCA 59.750 55.000 0.00 0.00 0.00 5.10
3414 3732 1.134280 CCTCCAATCCAGAACTCGCAT 60.134 52.381 0.00 0.00 0.00 4.73
3415 3733 1.938577 CTCCAATCCAGAACTCGCATG 59.061 52.381 0.00 0.00 0.00 4.06
3416 3734 1.278985 TCCAATCCAGAACTCGCATGT 59.721 47.619 0.00 0.00 0.00 3.21
3417 3735 1.399440 CCAATCCAGAACTCGCATGTG 59.601 52.381 0.00 0.00 0.00 3.21
3418 3736 2.079158 CAATCCAGAACTCGCATGTGT 58.921 47.619 6.09 0.00 0.00 3.72
3419 3737 2.479566 ATCCAGAACTCGCATGTGTT 57.520 45.000 6.09 3.50 34.68 3.32
3420 3738 3.610040 ATCCAGAACTCGCATGTGTTA 57.390 42.857 6.09 0.00 32.29 2.41
3421 3739 3.394674 TCCAGAACTCGCATGTGTTAA 57.605 42.857 6.09 0.00 32.29 2.01
3422 3740 3.734463 TCCAGAACTCGCATGTGTTAAA 58.266 40.909 6.09 0.00 32.29 1.52
3423 3741 3.745975 TCCAGAACTCGCATGTGTTAAAG 59.254 43.478 6.09 0.00 32.29 1.85
3424 3742 3.120199 CCAGAACTCGCATGTGTTAAAGG 60.120 47.826 6.09 0.00 32.29 3.11
3425 3743 3.745975 CAGAACTCGCATGTGTTAAAGGA 59.254 43.478 6.09 0.00 32.29 3.36
3426 3744 3.997021 AGAACTCGCATGTGTTAAAGGAG 59.003 43.478 6.09 0.00 32.29 3.69
3427 3745 3.678056 ACTCGCATGTGTTAAAGGAGA 57.322 42.857 6.09 0.00 0.00 3.71
3428 3746 3.589988 ACTCGCATGTGTTAAAGGAGAG 58.410 45.455 6.09 0.00 0.00 3.20
3429 3747 2.932614 CTCGCATGTGTTAAAGGAGAGG 59.067 50.000 6.09 0.00 0.00 3.69
3430 3748 2.565391 TCGCATGTGTTAAAGGAGAGGA 59.435 45.455 6.09 0.00 0.00 3.71
3431 3749 2.932614 CGCATGTGTTAAAGGAGAGGAG 59.067 50.000 0.00 0.00 0.00 3.69
3432 3750 3.617531 CGCATGTGTTAAAGGAGAGGAGT 60.618 47.826 0.00 0.00 0.00 3.85
3433 3751 4.327680 GCATGTGTTAAAGGAGAGGAGTT 58.672 43.478 0.00 0.00 0.00 3.01
3434 3752 5.488341 GCATGTGTTAAAGGAGAGGAGTTA 58.512 41.667 0.00 0.00 0.00 2.24
3435 3753 5.938125 GCATGTGTTAAAGGAGAGGAGTTAA 59.062 40.000 0.00 0.00 0.00 2.01
3436 3754 6.430000 GCATGTGTTAAAGGAGAGGAGTTAAA 59.570 38.462 0.00 0.00 0.00 1.52
3437 3755 7.121315 GCATGTGTTAAAGGAGAGGAGTTAAAT 59.879 37.037 0.00 0.00 0.00 1.40
3438 3756 7.979444 TGTGTTAAAGGAGAGGAGTTAAATG 57.021 36.000 0.00 0.00 0.00 2.32
3439 3757 7.741785 TGTGTTAAAGGAGAGGAGTTAAATGA 58.258 34.615 0.00 0.00 0.00 2.57
3440 3758 7.878127 TGTGTTAAAGGAGAGGAGTTAAATGAG 59.122 37.037 0.00 0.00 0.00 2.90
3441 3759 7.334671 GTGTTAAAGGAGAGGAGTTAAATGAGG 59.665 40.741 0.00 0.00 0.00 3.86
3442 3760 7.236847 TGTTAAAGGAGAGGAGTTAAATGAGGA 59.763 37.037 0.00 0.00 0.00 3.71
3443 3761 5.948742 AAGGAGAGGAGTTAAATGAGGAG 57.051 43.478 0.00 0.00 0.00 3.69
3444 3762 5.213868 AGGAGAGGAGTTAAATGAGGAGA 57.786 43.478 0.00 0.00 0.00 3.71
3445 3763 5.208121 AGGAGAGGAGTTAAATGAGGAGAG 58.792 45.833 0.00 0.00 0.00 3.20
3446 3764 5.043732 AGGAGAGGAGTTAAATGAGGAGAGA 60.044 44.000 0.00 0.00 0.00 3.10
3447 3765 5.301805 GGAGAGGAGTTAAATGAGGAGAGAG 59.698 48.000 0.00 0.00 0.00 3.20
3448 3766 6.086011 AGAGGAGTTAAATGAGGAGAGAGA 57.914 41.667 0.00 0.00 0.00 3.10
3449 3767 6.129179 AGAGGAGTTAAATGAGGAGAGAGAG 58.871 44.000 0.00 0.00 0.00 3.20
3450 3768 5.208121 AGGAGTTAAATGAGGAGAGAGAGG 58.792 45.833 0.00 0.00 0.00 3.69
3451 3769 5.043732 AGGAGTTAAATGAGGAGAGAGAGGA 60.044 44.000 0.00 0.00 0.00 3.71
3452 3770 5.068591 GGAGTTAAATGAGGAGAGAGAGGAC 59.931 48.000 0.00 0.00 0.00 3.85
3453 3771 5.837829 AGTTAAATGAGGAGAGAGAGGACT 58.162 41.667 0.00 0.00 0.00 3.85
3454 3772 6.975949 AGTTAAATGAGGAGAGAGAGGACTA 58.024 40.000 0.00 0.00 0.00 2.59
3455 3773 7.415086 AGTTAAATGAGGAGAGAGAGGACTAA 58.585 38.462 0.00 0.00 0.00 2.24
3456 3774 8.065007 AGTTAAATGAGGAGAGAGAGGACTAAT 58.935 37.037 0.00 0.00 0.00 1.73
3457 3775 6.976934 AAATGAGGAGAGAGAGGACTAATC 57.023 41.667 0.00 0.00 0.00 1.75
3458 3776 4.447138 TGAGGAGAGAGAGGACTAATCC 57.553 50.000 0.00 0.00 46.69 3.01
3473 3791 6.296803 GGACTAATCCACATTTTAGTAGGGG 58.703 44.000 0.00 0.00 45.47 4.79
3474 3792 6.126565 GGACTAATCCACATTTTAGTAGGGGT 60.127 42.308 0.00 0.00 45.47 4.95
3475 3793 7.071572 GGACTAATCCACATTTTAGTAGGGGTA 59.928 40.741 0.00 0.00 45.47 3.69
3476 3794 7.799081 ACTAATCCACATTTTAGTAGGGGTAC 58.201 38.462 0.00 0.00 36.99 3.34
3477 3795 7.147426 ACTAATCCACATTTTAGTAGGGGTACC 60.147 40.741 2.17 2.17 41.38 3.34
3518 3836 4.505808 GTCTCAAGACTAGTTTTAGCCCC 58.494 47.826 0.00 0.00 41.65 5.80
3519 3837 4.223255 GTCTCAAGACTAGTTTTAGCCCCT 59.777 45.833 0.00 0.00 41.65 4.79
3520 3838 4.466726 TCTCAAGACTAGTTTTAGCCCCTC 59.533 45.833 0.00 0.00 0.00 4.30
3521 3839 4.426704 TCAAGACTAGTTTTAGCCCCTCT 58.573 43.478 0.00 0.00 0.00 3.69
3522 3840 4.844655 TCAAGACTAGTTTTAGCCCCTCTT 59.155 41.667 0.00 0.00 0.00 2.85
3523 3841 5.309806 TCAAGACTAGTTTTAGCCCCTCTTT 59.690 40.000 0.00 0.00 0.00 2.52
3524 3842 6.499350 TCAAGACTAGTTTTAGCCCCTCTTTA 59.501 38.462 0.00 0.00 0.00 1.85
3525 3843 6.547930 AGACTAGTTTTAGCCCCTCTTTAG 57.452 41.667 0.00 0.00 0.00 1.85
3526 3844 6.024247 AGACTAGTTTTAGCCCCTCTTTAGT 58.976 40.000 0.00 0.00 0.00 2.24
3527 3845 6.154877 AGACTAGTTTTAGCCCCTCTTTAGTC 59.845 42.308 0.00 0.00 36.42 2.59
3528 3846 5.783875 ACTAGTTTTAGCCCCTCTTTAGTCA 59.216 40.000 0.00 0.00 0.00 3.41
3529 3847 5.167303 AGTTTTAGCCCCTCTTTAGTCAG 57.833 43.478 0.00 0.00 0.00 3.51
3530 3848 4.019231 AGTTTTAGCCCCTCTTTAGTCAGG 60.019 45.833 0.00 0.00 0.00 3.86
3535 3853 0.253327 CCCTCTTTAGTCAGGGGTGC 59.747 60.000 0.00 0.00 45.39 5.01
3536 3854 1.280457 CCTCTTTAGTCAGGGGTGCT 58.720 55.000 0.00 0.00 28.24 4.40
3537 3855 1.630878 CCTCTTTAGTCAGGGGTGCTT 59.369 52.381 0.00 0.00 28.24 3.91
3538 3856 2.616510 CCTCTTTAGTCAGGGGTGCTTG 60.617 54.545 0.00 0.00 28.24 4.01
3539 3857 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
3540 3858 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
3541 3859 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
3542 3860 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
3543 3861 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
3544 3862 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
3545 3863 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
3546 3864 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
3547 3865 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
3548 3866 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
3549 3867 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
3550 3868 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
3551 3869 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
3552 3870 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
3553 3871 3.149981 GTGCTTGGAACTTTAGCCTCTT 58.850 45.455 0.00 0.00 34.03 2.85
3554 3872 4.324267 GTGCTTGGAACTTTAGCCTCTTA 58.676 43.478 0.00 0.00 34.03 2.10
3555 3873 4.760204 GTGCTTGGAACTTTAGCCTCTTAA 59.240 41.667 0.00 0.00 34.03 1.85
3556 3874 5.240844 GTGCTTGGAACTTTAGCCTCTTAAA 59.759 40.000 0.00 0.00 34.03 1.52
3557 3875 5.473504 TGCTTGGAACTTTAGCCTCTTAAAG 59.526 40.000 4.46 4.46 43.21 1.85
3558 3876 5.705905 GCTTGGAACTTTAGCCTCTTAAAGA 59.294 40.000 11.30 0.00 41.17 2.52
3559 3877 6.128145 GCTTGGAACTTTAGCCTCTTAAAGAG 60.128 42.308 11.30 0.56 41.17 2.85
3560 3878 6.681729 TGGAACTTTAGCCTCTTAAAGAGA 57.318 37.500 11.30 0.00 45.07 3.10
3561 3879 6.465084 TGGAACTTTAGCCTCTTAAAGAGAC 58.535 40.000 11.30 0.00 45.07 3.36
3562 3880 6.270231 TGGAACTTTAGCCTCTTAAAGAGACT 59.730 38.462 11.30 1.37 45.07 3.24
3563 3881 7.453752 TGGAACTTTAGCCTCTTAAAGAGACTA 59.546 37.037 11.30 0.40 45.07 2.59
3564 3882 8.479689 GGAACTTTAGCCTCTTAAAGAGACTAT 58.520 37.037 11.30 0.00 45.07 2.12
3565 3883 9.878667 GAACTTTAGCCTCTTAAAGAGACTATT 57.121 33.333 11.30 0.00 45.07 1.73
3572 3890 9.878667 AGCCTCTTAAAGAGACTATTTTTAGTC 57.121 33.333 0.00 5.24 45.07 2.59
3573 3891 9.654663 GCCTCTTAAAGAGACTATTTTTAGTCA 57.345 33.333 13.86 0.00 45.07 3.41
3590 3908 7.613551 TTTAGTCAGACTAAAAGAAGTCCCT 57.386 36.000 26.93 0.00 44.84 4.20
3591 3909 7.613551 TTAGTCAGACTAAAAGAAGTCCCTT 57.386 36.000 19.07 0.00 45.86 3.95
3592 3910 5.859495 AGTCAGACTAAAAGAAGTCCCTTG 58.141 41.667 0.00 0.00 45.86 3.61
3593 3911 4.998033 GTCAGACTAAAAGAAGTCCCTTGG 59.002 45.833 0.00 0.00 45.86 3.61
3594 3912 4.905456 TCAGACTAAAAGAAGTCCCTTGGA 59.095 41.667 0.54 0.00 45.86 3.53
3595 3913 5.548056 TCAGACTAAAAGAAGTCCCTTGGAT 59.452 40.000 0.54 0.00 45.86 3.41
3596 3914 5.877564 CAGACTAAAAGAAGTCCCTTGGATC 59.122 44.000 0.54 0.00 45.86 3.36
3597 3915 5.045505 AGACTAAAAGAAGTCCCTTGGATCC 60.046 44.000 4.20 4.20 45.86 3.36
3598 3916 4.601857 ACTAAAAGAAGTCCCTTGGATCCA 59.398 41.667 11.44 11.44 32.73 3.41
3599 3917 4.469469 AAAAGAAGTCCCTTGGATCCAA 57.531 40.909 25.53 25.53 32.73 3.53
3600 3918 8.492640 GACTAAAAGAAGTCCCTTGGATCCAAG 61.493 44.444 37.68 37.68 42.72 3.61
3607 3925 3.181526 CTTGGATCCAAGCACCCTC 57.818 57.895 35.47 0.00 45.38 4.30
3734 4052 9.712305 GTATGGCATGTTTACATACTCTTATCT 57.288 33.333 10.98 0.00 42.12 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.022416 TGGTGGTGTTACAAGAAATCATGC 60.022 41.667 0.00 0.00 0.00 4.06
1 2 5.335897 CCTGGTGGTGTTACAAGAAATCATG 60.336 44.000 0.00 0.00 0.00 3.07
2 3 4.766891 CCTGGTGGTGTTACAAGAAATCAT 59.233 41.667 0.00 0.00 0.00 2.45
3 4 4.141287 CCTGGTGGTGTTACAAGAAATCA 58.859 43.478 0.00 0.00 0.00 2.57
4 5 4.142038 ACCTGGTGGTGTTACAAGAAATC 58.858 43.478 0.00 0.00 46.51 2.17
5 6 4.178956 ACCTGGTGGTGTTACAAGAAAT 57.821 40.909 0.00 0.00 46.51 2.17
23 24 5.337652 GCAGTAGACACATTTTAGAGGACCT 60.338 44.000 0.00 0.00 0.00 3.85
45 46 3.065233 GTGACAGTCTGTGTTCATTTGCA 59.935 43.478 11.04 0.00 40.56 4.08
46 47 3.313526 AGTGACAGTCTGTGTTCATTTGC 59.686 43.478 11.04 0.00 40.56 3.68
47 48 5.163723 ACAAGTGACAGTCTGTGTTCATTTG 60.164 40.000 11.04 16.24 40.56 2.32
48 49 4.943705 ACAAGTGACAGTCTGTGTTCATTT 59.056 37.500 11.04 2.80 40.56 2.32
72 73 0.522626 CATTGCGCACCAGATTGTCA 59.477 50.000 11.12 0.00 0.00 3.58
86 87 2.684881 CACCTAGATTGTCCCACATTGC 59.315 50.000 0.00 0.00 0.00 3.56
90 91 1.003118 GTGCACCTAGATTGTCCCACA 59.997 52.381 5.22 0.00 0.00 4.17
138 139 4.536364 AGGTCGATTGCGTTGATTAATG 57.464 40.909 0.00 0.00 38.98 1.90
143 144 2.967362 TGTTAGGTCGATTGCGTTGAT 58.033 42.857 0.00 0.00 38.98 2.57
144 145 2.442212 TGTTAGGTCGATTGCGTTGA 57.558 45.000 0.00 0.00 38.98 3.18
145 146 2.415168 ACATGTTAGGTCGATTGCGTTG 59.585 45.455 0.00 0.00 38.98 4.10
203 204 3.348119 GGTTCAACTTTGGGATCCTCTC 58.652 50.000 12.58 0.00 0.00 3.20
205 206 2.084546 CGGTTCAACTTTGGGATCCTC 58.915 52.381 12.58 2.25 0.00 3.71
208 209 1.243902 TGCGGTTCAACTTTGGGATC 58.756 50.000 0.00 0.00 0.00 3.36
224 225 1.721489 CGGTTTCGTTGACATCTTGCG 60.721 52.381 0.00 0.00 0.00 4.85
272 273 0.179094 CTGCGTTTAGGGCCACGATA 60.179 55.000 17.90 5.75 38.76 2.92
340 346 1.678123 CCTCCATGAAGAGTGGCACTG 60.678 57.143 27.45 10.22 36.66 3.66
364 370 3.236003 GAGGAAGTTGACCCGGCGT 62.236 63.158 6.01 0.00 0.00 5.68
365 371 2.434359 GAGGAAGTTGACCCGGCG 60.434 66.667 0.00 0.00 0.00 6.46
366 372 2.046217 GGAGGAAGTTGACCCGGC 60.046 66.667 0.00 0.00 0.00 6.13
367 373 2.264794 CGGAGGAAGTTGACCCGG 59.735 66.667 0.00 0.00 36.81 5.73
383 389 3.852536 CGTTGTTACTAGCTTTCTCTCCG 59.147 47.826 0.00 0.00 0.00 4.63
406 412 2.586258 TTCGGCTAGTGAGAATGAGC 57.414 50.000 0.00 0.00 0.00 4.26
422 428 0.942962 GGCAGGATCAGCAGATTTCG 59.057 55.000 10.94 0.00 33.72 3.46
453 459 4.772231 TCTCGCGGGCCTTAGGGT 62.772 66.667 6.13 0.00 34.45 4.34
558 564 4.186159 GGTACGATTTTTAGGCTGCTGTA 58.814 43.478 0.00 0.00 0.00 2.74
565 571 4.436451 CGTCAAAGGGTACGATTTTTAGGC 60.436 45.833 0.00 0.00 41.55 3.93
601 607 1.351017 TCCTTCAACTCACCCATCACC 59.649 52.381 0.00 0.00 0.00 4.02
614 620 2.266279 CCCTTACCTGTCCTCCTTCAA 58.734 52.381 0.00 0.00 0.00 2.69
626 632 1.032768 ACCTCCCCATACCCTTACCT 58.967 55.000 0.00 0.00 0.00 3.08
677 683 0.504384 CGCAACCGATCGATCATGTC 59.496 55.000 24.40 13.77 36.29 3.06
1029 1073 3.319198 GGACCCTTCTCCACCGCA 61.319 66.667 0.00 0.00 0.00 5.69
1262 1306 2.354729 CATGGGAAAGCGGGGTGA 59.645 61.111 0.00 0.00 0.00 4.02
1333 1377 1.493950 GCGGTGCTCAGATCCGAATG 61.494 60.000 11.37 0.00 46.05 2.67
1553 1597 0.392193 CACTGCAGCCACCTTCCTAG 60.392 60.000 15.27 0.00 0.00 3.02
1589 1633 1.135960 CTCCTTCTCCCCATCTTCCC 58.864 60.000 0.00 0.00 0.00 3.97
1646 1690 3.760035 GTTCAGAGGGCTCCGCGA 61.760 66.667 8.23 0.00 0.00 5.87
2056 2265 1.592223 CTCTGGACCCCGTCTTCAC 59.408 63.158 0.00 0.00 32.47 3.18
2082 2291 1.880646 GCCGCTCTTGTAAACCTTCCA 60.881 52.381 0.00 0.00 0.00 3.53
2363 2575 4.293671 CGCCACCCCTTTCCCCAA 62.294 66.667 0.00 0.00 0.00 4.12
2523 2840 5.458948 CCCATCTCCTACATCTCCTCTACTT 60.459 48.000 0.00 0.00 0.00 2.24
2580 2897 2.422479 CTGCAATGTCATGGTCTCAAGG 59.578 50.000 0.00 0.00 0.00 3.61
2879 3197 7.197071 AGCAAACGTCAACATATCAAACTAA 57.803 32.000 0.00 0.00 0.00 2.24
2970 3288 7.215085 ACGGAGGGAGTATTCAACATTATAAC 58.785 38.462 0.00 0.00 0.00 1.89
3172 3490 3.920231 TCCTGCTGCAAGACATAGATT 57.080 42.857 3.02 0.00 34.07 2.40
3173 3491 4.434545 AATCCTGCTGCAAGACATAGAT 57.565 40.909 2.54 0.00 34.07 1.98
3258 3576 2.463752 ACGTATCCAAGCACCCTCTTA 58.536 47.619 0.00 0.00 0.00 2.10
3259 3577 1.276622 ACGTATCCAAGCACCCTCTT 58.723 50.000 0.00 0.00 0.00 2.85
3260 3578 1.276622 AACGTATCCAAGCACCCTCT 58.723 50.000 0.00 0.00 0.00 3.69
3261 3579 2.109425 AAACGTATCCAAGCACCCTC 57.891 50.000 0.00 0.00 0.00 4.30
3262 3580 2.579410 AAAACGTATCCAAGCACCCT 57.421 45.000 0.00 0.00 0.00 4.34
3263 3581 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
3264 3582 4.251268 AGACTAAAACGTATCCAAGCACC 58.749 43.478 0.00 0.00 0.00 5.01
3265 3583 4.927425 TGAGACTAAAACGTATCCAAGCAC 59.073 41.667 0.00 0.00 0.00 4.40
3266 3584 5.142061 TGAGACTAAAACGTATCCAAGCA 57.858 39.130 0.00 0.00 0.00 3.91
3267 3585 5.810587 TCATGAGACTAAAACGTATCCAAGC 59.189 40.000 0.00 0.00 0.00 4.01
3268 3586 7.223058 GTCATGAGACTAAAACGTATCCAAG 57.777 40.000 0.00 0.00 41.64 3.61
3283 3601 6.071278 AGTCCCACTACTTTTAGTCATGAGAC 60.071 42.308 0.00 0.00 45.31 3.36
3284 3602 6.017192 AGTCCCACTACTTTTAGTCATGAGA 58.983 40.000 0.00 0.00 36.31 3.27
3285 3603 6.287589 AGTCCCACTACTTTTAGTCATGAG 57.712 41.667 0.00 0.00 36.31 2.90
3286 3604 7.786046 TTAGTCCCACTACTTTTAGTCATGA 57.214 36.000 0.00 0.00 36.31 3.07
3287 3605 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
3288 3606 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
3289 3607 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
3290 3608 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
3291 3609 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
3292 3610 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
3293 3611 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
3294 3612 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
3295 3613 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
3296 3614 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
3297 3615 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
3298 3616 4.630505 GCTAGCAAGTTTTAGTCCCACTAC 59.369 45.833 10.63 0.00 28.93 2.73
3299 3617 4.323257 GGCTAGCAAGTTTTAGTCCCACTA 60.323 45.833 18.24 0.00 0.00 2.74
3300 3618 3.559384 GGCTAGCAAGTTTTAGTCCCACT 60.559 47.826 18.24 0.00 0.00 4.00
3301 3619 2.747989 GGCTAGCAAGTTTTAGTCCCAC 59.252 50.000 18.24 0.00 0.00 4.61
3302 3620 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
3303 3621 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
3304 3622 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
3305 3623 3.685272 GGTGAGGCTAGCAAGTTTTAGTC 59.315 47.826 18.24 0.00 0.00 2.59
3306 3624 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
3307 3625 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
3308 3626 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
3309 3627 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
3310 3628 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
3311 3629 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
3312 3630 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
3313 3631 1.099879 GCATGGGTGAGGCTAGCAAG 61.100 60.000 18.24 0.00 0.00 4.01
3314 3632 1.077501 GCATGGGTGAGGCTAGCAA 60.078 57.895 18.24 0.00 0.00 3.91
3315 3633 1.565390 AAGCATGGGTGAGGCTAGCA 61.565 55.000 18.24 0.00 42.15 3.49
3316 3634 1.099879 CAAGCATGGGTGAGGCTAGC 61.100 60.000 6.04 6.04 42.15 3.42
3317 3635 0.465097 CCAAGCATGGGTGAGGCTAG 60.465 60.000 0.00 0.00 42.15 3.42
3318 3636 0.913934 TCCAAGCATGGGTGAGGCTA 60.914 55.000 8.36 0.00 42.15 3.93
3319 3637 1.578215 ATCCAAGCATGGGTGAGGCT 61.578 55.000 8.36 0.00 45.93 4.58
3328 3646 7.500227 TCTCTTTAGTATTTGGATCCAAGCATG 59.500 37.037 25.69 12.43 37.24 4.06
3329 3647 7.500559 GTCTCTTTAGTATTTGGATCCAAGCAT 59.499 37.037 25.69 19.69 37.24 3.79
3330 3648 6.823689 GTCTCTTTAGTATTTGGATCCAAGCA 59.176 38.462 25.69 14.00 37.24 3.91
3331 3649 7.051000 AGTCTCTTTAGTATTTGGATCCAAGC 58.949 38.462 25.69 19.18 37.24 4.01
3350 3668 9.507329 TGCTCATTAACTTGATTTTTAGTCTCT 57.493 29.630 0.00 0.00 0.00 3.10
3364 3682 9.866655 TGGAGGATAATAAATGCTCATTAACTT 57.133 29.630 8.48 0.00 38.10 2.66
3365 3683 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
3368 3686 9.077885 GGTTTGGAGGATAATAAATGCTCATTA 57.922 33.333 8.48 0.00 38.10 1.90
3369 3687 7.015584 GGGTTTGGAGGATAATAAATGCTCATT 59.984 37.037 8.48 0.00 38.10 2.57
3370 3688 6.494835 GGGTTTGGAGGATAATAAATGCTCAT 59.505 38.462 8.48 0.00 38.10 2.90
3371 3689 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
3372 3690 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
3373 3691 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
3374 3692 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
3375 3693 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
3376 3694 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
3377 3695 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
3378 3696 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
3379 3697 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
3380 3698 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
3381 3699 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
3382 3700 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
3383 3701 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
3384 3702 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
3385 3703 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
3386 3704 1.635487 TCTGGATTGGAGGGTTTGGAG 59.365 52.381 0.00 0.00 0.00 3.86
3387 3705 1.753903 TCTGGATTGGAGGGTTTGGA 58.246 50.000 0.00 0.00 0.00 3.53
3388 3706 2.171003 GTTCTGGATTGGAGGGTTTGG 58.829 52.381 0.00 0.00 0.00 3.28
3389 3707 3.084786 GAGTTCTGGATTGGAGGGTTTG 58.915 50.000 0.00 0.00 0.00 2.93
3390 3708 2.290323 CGAGTTCTGGATTGGAGGGTTT 60.290 50.000 0.00 0.00 0.00 3.27
3391 3709 1.279271 CGAGTTCTGGATTGGAGGGTT 59.721 52.381 0.00 0.00 0.00 4.11
3392 3710 0.905357 CGAGTTCTGGATTGGAGGGT 59.095 55.000 0.00 0.00 0.00 4.34
3393 3711 0.462759 GCGAGTTCTGGATTGGAGGG 60.463 60.000 0.00 0.00 0.00 4.30
3394 3712 0.250234 TGCGAGTTCTGGATTGGAGG 59.750 55.000 0.00 0.00 0.00 4.30
3395 3713 1.938577 CATGCGAGTTCTGGATTGGAG 59.061 52.381 0.00 0.00 0.00 3.86
3396 3714 1.278985 ACATGCGAGTTCTGGATTGGA 59.721 47.619 0.00 0.00 0.00 3.53
3397 3715 1.399440 CACATGCGAGTTCTGGATTGG 59.601 52.381 0.00 0.00 0.00 3.16
3398 3716 2.079158 ACACATGCGAGTTCTGGATTG 58.921 47.619 0.00 0.00 0.00 2.67
3399 3717 2.479566 ACACATGCGAGTTCTGGATT 57.520 45.000 0.00 0.00 0.00 3.01
3400 3718 2.479566 AACACATGCGAGTTCTGGAT 57.520 45.000 0.00 0.00 0.00 3.41
3401 3719 3.394674 TTAACACATGCGAGTTCTGGA 57.605 42.857 0.00 0.00 0.00 3.86
3402 3720 3.120199 CCTTTAACACATGCGAGTTCTGG 60.120 47.826 0.00 0.00 0.00 3.86
3403 3721 3.745975 TCCTTTAACACATGCGAGTTCTG 59.254 43.478 0.00 0.00 0.00 3.02
3404 3722 3.997021 CTCCTTTAACACATGCGAGTTCT 59.003 43.478 0.00 0.00 0.00 3.01
3405 3723 3.994392 TCTCCTTTAACACATGCGAGTTC 59.006 43.478 0.00 0.00 0.00 3.01
3406 3724 3.997021 CTCTCCTTTAACACATGCGAGTT 59.003 43.478 0.00 0.00 0.00 3.01
3407 3725 3.589988 CTCTCCTTTAACACATGCGAGT 58.410 45.455 0.00 0.00 0.00 4.18
3408 3726 2.932614 CCTCTCCTTTAACACATGCGAG 59.067 50.000 0.00 0.00 0.00 5.03
3409 3727 2.565391 TCCTCTCCTTTAACACATGCGA 59.435 45.455 0.00 0.00 0.00 5.10
3410 3728 2.932614 CTCCTCTCCTTTAACACATGCG 59.067 50.000 0.00 0.00 0.00 4.73
3411 3729 3.944087 ACTCCTCTCCTTTAACACATGC 58.056 45.455 0.00 0.00 0.00 4.06
3412 3730 7.979444 TTTAACTCCTCTCCTTTAACACATG 57.021 36.000 0.00 0.00 0.00 3.21
3413 3731 8.383175 TCATTTAACTCCTCTCCTTTAACACAT 58.617 33.333 0.00 0.00 0.00 3.21
3414 3732 7.741785 TCATTTAACTCCTCTCCTTTAACACA 58.258 34.615 0.00 0.00 0.00 3.72
3415 3733 7.334671 CCTCATTTAACTCCTCTCCTTTAACAC 59.665 40.741 0.00 0.00 0.00 3.32
3416 3734 7.236847 TCCTCATTTAACTCCTCTCCTTTAACA 59.763 37.037 0.00 0.00 0.00 2.41
3417 3735 7.621796 TCCTCATTTAACTCCTCTCCTTTAAC 58.378 38.462 0.00 0.00 0.00 2.01
3418 3736 7.678598 TCTCCTCATTTAACTCCTCTCCTTTAA 59.321 37.037 0.00 0.00 0.00 1.52
3419 3737 7.189794 TCTCCTCATTTAACTCCTCTCCTTTA 58.810 38.462 0.00 0.00 0.00 1.85
3420 3738 6.026186 TCTCCTCATTTAACTCCTCTCCTTT 58.974 40.000 0.00 0.00 0.00 3.11
3421 3739 5.594777 TCTCCTCATTTAACTCCTCTCCTT 58.405 41.667 0.00 0.00 0.00 3.36
3422 3740 5.043732 TCTCTCCTCATTTAACTCCTCTCCT 60.044 44.000 0.00 0.00 0.00 3.69
3423 3741 5.205056 TCTCTCCTCATTTAACTCCTCTCC 58.795 45.833 0.00 0.00 0.00 3.71
3424 3742 6.126409 TCTCTCTCCTCATTTAACTCCTCTC 58.874 44.000 0.00 0.00 0.00 3.20
3425 3743 6.086011 TCTCTCTCCTCATTTAACTCCTCT 57.914 41.667 0.00 0.00 0.00 3.69
3426 3744 5.301805 CCTCTCTCTCCTCATTTAACTCCTC 59.698 48.000 0.00 0.00 0.00 3.71
3427 3745 5.043732 TCCTCTCTCTCCTCATTTAACTCCT 60.044 44.000 0.00 0.00 0.00 3.69
3428 3746 5.068591 GTCCTCTCTCTCCTCATTTAACTCC 59.931 48.000 0.00 0.00 0.00 3.85
3429 3747 5.891551 AGTCCTCTCTCTCCTCATTTAACTC 59.108 44.000 0.00 0.00 0.00 3.01
3430 3748 5.837829 AGTCCTCTCTCTCCTCATTTAACT 58.162 41.667 0.00 0.00 0.00 2.24
3431 3749 7.648039 TTAGTCCTCTCTCTCCTCATTTAAC 57.352 40.000 0.00 0.00 0.00 2.01
3432 3750 7.507616 GGATTAGTCCTCTCTCTCCTCATTTAA 59.492 40.741 0.00 0.00 41.60 1.52
3433 3751 7.007723 GGATTAGTCCTCTCTCTCCTCATTTA 58.992 42.308 0.00 0.00 41.60 1.40
3434 3752 5.838521 GGATTAGTCCTCTCTCTCCTCATTT 59.161 44.000 0.00 0.00 41.60 2.32
3435 3753 5.103301 TGGATTAGTCCTCTCTCTCCTCATT 60.103 44.000 5.79 0.00 45.32 2.57
3436 3754 4.418526 TGGATTAGTCCTCTCTCTCCTCAT 59.581 45.833 5.79 0.00 45.32 2.90
3437 3755 3.788708 TGGATTAGTCCTCTCTCTCCTCA 59.211 47.826 5.79 0.00 45.32 3.86
3438 3756 4.142038 GTGGATTAGTCCTCTCTCTCCTC 58.858 52.174 5.79 0.00 45.32 3.71
3439 3757 3.529734 TGTGGATTAGTCCTCTCTCTCCT 59.470 47.826 5.79 0.00 45.32 3.69
3440 3758 3.904717 TGTGGATTAGTCCTCTCTCTCC 58.095 50.000 5.79 0.00 45.32 3.71
3441 3759 6.478512 AAATGTGGATTAGTCCTCTCTCTC 57.521 41.667 5.79 0.00 45.32 3.20
3442 3760 6.882768 AAAATGTGGATTAGTCCTCTCTCT 57.117 37.500 5.79 0.00 45.32 3.10
3443 3761 7.787028 ACTAAAATGTGGATTAGTCCTCTCTC 58.213 38.462 5.79 0.00 45.32 3.20
3444 3762 7.741554 ACTAAAATGTGGATTAGTCCTCTCT 57.258 36.000 5.79 0.00 45.32 3.10
3445 3763 8.145122 CCTACTAAAATGTGGATTAGTCCTCTC 58.855 40.741 5.79 0.00 45.32 3.20
3446 3764 7.071321 CCCTACTAAAATGTGGATTAGTCCTCT 59.929 40.741 5.79 0.00 45.32 3.69
3447 3765 7.217906 CCCTACTAAAATGTGGATTAGTCCTC 58.782 42.308 5.79 2.58 45.32 3.71
3448 3766 6.101296 CCCCTACTAAAATGTGGATTAGTCCT 59.899 42.308 5.79 0.00 45.32 3.85
3449 3767 6.126565 ACCCCTACTAAAATGTGGATTAGTCC 60.127 42.308 0.00 0.00 40.53 3.85
3450 3768 6.896883 ACCCCTACTAAAATGTGGATTAGTC 58.103 40.000 1.78 0.00 40.53 2.59
3451 3769 6.903340 ACCCCTACTAAAATGTGGATTAGT 57.097 37.500 3.93 3.93 43.05 2.24
3452 3770 7.222161 GGTACCCCTACTAAAATGTGGATTAG 58.778 42.308 0.00 0.00 35.67 1.73
3453 3771 7.140522 GGTACCCCTACTAAAATGTGGATTA 57.859 40.000 0.00 0.00 0.00 1.75
3454 3772 6.009908 GGTACCCCTACTAAAATGTGGATT 57.990 41.667 0.00 0.00 0.00 3.01
3455 3773 5.641789 GGTACCCCTACTAAAATGTGGAT 57.358 43.478 0.00 0.00 0.00 3.41
3496 3814 4.223255 AGGGGCTAAAACTAGTCTTGAGAC 59.777 45.833 0.00 2.93 45.08 3.36
3497 3815 4.426704 AGGGGCTAAAACTAGTCTTGAGA 58.573 43.478 0.00 0.00 0.00 3.27
3498 3816 4.468153 AGAGGGGCTAAAACTAGTCTTGAG 59.532 45.833 0.00 0.00 0.00 3.02
3499 3817 4.426704 AGAGGGGCTAAAACTAGTCTTGA 58.573 43.478 0.00 0.00 0.00 3.02
3500 3818 4.828072 AGAGGGGCTAAAACTAGTCTTG 57.172 45.455 0.00 0.00 0.00 3.02
3501 3819 5.844773 AAAGAGGGGCTAAAACTAGTCTT 57.155 39.130 0.00 0.00 0.00 3.01
3502 3820 6.024247 ACTAAAGAGGGGCTAAAACTAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
3503 3821 6.070938 TGACTAAAGAGGGGCTAAAACTAGTC 60.071 42.308 0.00 0.00 0.00 2.59
3504 3822 5.783875 TGACTAAAGAGGGGCTAAAACTAGT 59.216 40.000 0.00 0.00 0.00 2.57
3505 3823 6.295719 TGACTAAAGAGGGGCTAAAACTAG 57.704 41.667 0.00 0.00 0.00 2.57
3506 3824 5.189145 CCTGACTAAAGAGGGGCTAAAACTA 59.811 44.000 0.00 0.00 0.00 2.24
3507 3825 4.019231 CCTGACTAAAGAGGGGCTAAAACT 60.019 45.833 0.00 0.00 0.00 2.66
3508 3826 4.262617 CCTGACTAAAGAGGGGCTAAAAC 58.737 47.826 0.00 0.00 0.00 2.43
3509 3827 3.265995 CCCTGACTAAAGAGGGGCTAAAA 59.734 47.826 0.00 0.00 44.88 1.52
3510 3828 2.844348 CCCTGACTAAAGAGGGGCTAAA 59.156 50.000 0.00 0.00 44.88 1.85
3511 3829 2.478292 CCCTGACTAAAGAGGGGCTAA 58.522 52.381 0.00 0.00 44.88 3.09
3512 3830 2.176247 CCCTGACTAAAGAGGGGCTA 57.824 55.000 0.00 0.00 44.88 3.93
3513 3831 3.013682 CCCTGACTAAAGAGGGGCT 57.986 57.895 0.00 0.00 44.88 5.19
3517 3835 1.280457 AGCACCCCTGACTAAAGAGG 58.720 55.000 0.00 0.00 0.00 3.69
3518 3836 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
3519 3837 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
3520 3838 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
3521 3839 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
3522 3840 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
3523 3841 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
3524 3842 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
3525 3843 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
3526 3844 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
3527 3845 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
3528 3846 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
3529 3847 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
3530 3848 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
3531 3849 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
3532 3850 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
3533 3851 3.508845 AAGAGGCTAAAGTTCCAAGCA 57.491 42.857 0.00 0.00 38.01 3.91
3534 3852 5.705905 TCTTTAAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 39.12 4.01
3535 3853 7.118535 GTCTCTTTAAGAGGCTAAAGTTCCAAG 59.881 40.741 18.21 0.00 43.38 3.61
3536 3854 6.935208 GTCTCTTTAAGAGGCTAAAGTTCCAA 59.065 38.462 18.21 0.00 43.38 3.53
3537 3855 6.465084 GTCTCTTTAAGAGGCTAAAGTTCCA 58.535 40.000 18.21 0.00 43.38 3.53
3538 3856 6.971527 GTCTCTTTAAGAGGCTAAAGTTCC 57.028 41.667 18.21 0.00 43.38 3.62
3547 3865 9.654663 TGACTAAAAATAGTCTCTTTAAGAGGC 57.345 33.333 17.87 17.87 46.94 4.70
3564 3882 8.491958 AGGGACTTCTTTTAGTCTGACTAAAAA 58.508 33.333 36.10 27.63 46.93 1.94
3565 3883 8.030913 AGGGACTTCTTTTAGTCTGACTAAAA 57.969 34.615 35.31 35.31 46.21 1.52
3566 3884 7.613551 AGGGACTTCTTTTAGTCTGACTAAA 57.386 36.000 29.65 29.65 41.79 1.85
3590 3908 1.965414 TAGAGGGTGCTTGGATCCAA 58.035 50.000 25.53 25.53 0.00 3.53
3591 3909 1.839994 CTTAGAGGGTGCTTGGATCCA 59.160 52.381 11.44 11.44 0.00 3.41
3592 3910 1.840635 ACTTAGAGGGTGCTTGGATCC 59.159 52.381 4.20 4.20 0.00 3.36
3593 3911 3.636153 AACTTAGAGGGTGCTTGGATC 57.364 47.619 0.00 0.00 0.00 3.36
3594 3912 3.330701 TGAAACTTAGAGGGTGCTTGGAT 59.669 43.478 0.00 0.00 0.00 3.41
3595 3913 2.708861 TGAAACTTAGAGGGTGCTTGGA 59.291 45.455 0.00 0.00 0.00 3.53
3596 3914 3.140325 TGAAACTTAGAGGGTGCTTGG 57.860 47.619 0.00 0.00 0.00 3.61
3597 3915 3.882888 TGTTGAAACTTAGAGGGTGCTTG 59.117 43.478 0.00 0.00 0.00 4.01
3598 3916 4.164843 TGTTGAAACTTAGAGGGTGCTT 57.835 40.909 0.00 0.00 0.00 3.91
3599 3917 3.857157 TGTTGAAACTTAGAGGGTGCT 57.143 42.857 0.00 0.00 0.00 4.40
3600 3918 4.072131 TCATGTTGAAACTTAGAGGGTGC 58.928 43.478 0.00 0.00 0.00 5.01
3601 3919 6.633500 TTTCATGTTGAAACTTAGAGGGTG 57.367 37.500 0.00 0.00 41.02 4.61
3602 3920 6.833933 ACTTTTCATGTTGAAACTTAGAGGGT 59.166 34.615 2.31 0.00 45.03 4.34
3603 3921 7.277174 ACTTTTCATGTTGAAACTTAGAGGG 57.723 36.000 2.31 0.00 45.03 4.30
3604 3922 8.190784 ACAACTTTTCATGTTGAAACTTAGAGG 58.809 33.333 12.64 0.58 45.03 3.69
3605 3923 9.226345 GACAACTTTTCATGTTGAAACTTAGAG 57.774 33.333 12.64 0.82 45.03 2.43
3606 3924 8.188139 GGACAACTTTTCATGTTGAAACTTAGA 58.812 33.333 12.64 0.00 45.03 2.10
3607 3925 8.190784 AGGACAACTTTTCATGTTGAAACTTAG 58.809 33.333 12.64 1.45 45.03 2.18
3648 3966 7.996644 AGGAACAGTTATAGGACAACTTTTCAA 59.003 33.333 13.19 0.00 41.34 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.