Multiple sequence alignment - TraesCS3D01G179700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G179700 chr3D 100.000 3369 0 0 1 3369 161597848 161594480 0.000000e+00 6222.0
1 TraesCS3D01G179700 chr3D 94.644 1755 76 12 1628 3369 161497956 161496207 0.000000e+00 2704.0
2 TraesCS3D01G179700 chr3D 88.274 2115 178 40 1107 3169 161401865 161399769 0.000000e+00 2468.0
3 TraesCS3D01G179700 chr3D 89.381 452 41 3 1175 1619 161498470 161498019 2.270000e-156 562.0
4 TraesCS3D01G179700 chr3D 94.048 168 9 1 639 806 512609026 512608860 1.550000e-63 254.0
5 TraesCS3D01G179700 chr3D 92.126 127 8 2 2318 2444 161400523 161400399 9.610000e-41 178.0
6 TraesCS3D01G179700 chr3D 89.844 128 11 2 3244 3369 161399697 161399570 2.690000e-36 163.0
7 TraesCS3D01G179700 chr3D 94.643 56 3 0 1030 1085 161402712 161402657 1.670000e-13 87.9
8 TraesCS3D01G179700 chr3D 94.643 56 3 0 1030 1085 161498731 161498676 1.670000e-13 87.9
9 TraesCS3D01G179700 chr3D 88.571 70 8 0 544 613 530432358 530432427 5.990000e-13 86.1
10 TraesCS3D01G179700 chr3A 96.063 2489 57 16 912 3369 190229242 190226764 0.000000e+00 4015.0
11 TraesCS3D01G179700 chr3A 96.501 2258 52 9 912 3146 191254224 191251971 0.000000e+00 3707.0
12 TraesCS3D01G179700 chr3A 92.731 1761 101 16 1628 3369 191006605 191004853 0.000000e+00 2518.0
13 TraesCS3D01G179700 chr3A 86.673 2116 210 44 1107 3169 190094656 190092560 0.000000e+00 2279.0
14 TraesCS3D01G179700 chr3A 89.498 1095 86 15 1367 2444 188112420 188113502 0.000000e+00 1358.0
15 TraesCS3D01G179700 chr3A 91.622 943 64 9 544 1476 190583542 190582605 0.000000e+00 1290.0
16 TraesCS3D01G179700 chr3A 83.837 761 68 27 2437 3164 188113380 188114118 0.000000e+00 673.0
17 TraesCS3D01G179700 chr3A 88.496 452 45 3 1175 1619 191007568 191007117 1.060000e-149 540.0
18 TraesCS3D01G179700 chr3A 91.484 364 27 2 544 903 190229644 190229281 6.490000e-137 497.0
19 TraesCS3D01G179700 chr3A 96.121 232 3 3 3143 3369 191251868 191251638 1.140000e-99 374.0
20 TraesCS3D01G179700 chr3A 87.407 270 31 2 1109 1375 188101487 188101756 1.170000e-79 307.0
21 TraesCS3D01G179700 chr3A 90.625 128 10 2 3244 3369 188114195 188114322 5.780000e-38 169.0
22 TraesCS3D01G179700 chr3A 89.844 128 11 2 3244 3369 190092488 190092361 2.690000e-36 163.0
23 TraesCS3D01G179700 chr3A 88.542 96 10 1 996 1091 190094897 190094803 7.640000e-22 115.0
24 TraesCS3D01G179700 chr3A 95.588 68 2 1 478 545 653608637 653608571 1.280000e-19 108.0
25 TraesCS3D01G179700 chr3A 92.958 71 3 2 478 547 208655325 208655394 5.950000e-18 102.0
26 TraesCS3D01G179700 chr3A 94.915 59 3 0 544 602 191265812 191265754 3.580000e-15 93.5
27 TraesCS3D01G179700 chr3A 90.000 70 7 0 544 613 664162393 664162462 1.290000e-14 91.6
28 TraesCS3D01G179700 chr3A 92.857 56 4 0 1030 1085 188101276 188101331 7.750000e-12 82.4
29 TraesCS3D01G179700 chr3A 95.349 43 2 0 3162 3204 188114142 188114184 6.030000e-08 69.4
30 TraesCS3D01G179700 chr3A 95.000 40 2 0 3165 3204 190092538 190092499 2.810000e-06 63.9
31 TraesCS3D01G179700 chr3B 96.172 2351 58 12 997 3330 238113778 238111443 0.000000e+00 3814.0
32 TraesCS3D01G179700 chr3B 87.889 1866 155 37 1107 2949 237734315 237732498 0.000000e+00 2128.0
33 TraesCS3D01G179700 chr3B 88.946 1565 141 26 1628 3169 237972969 237971414 0.000000e+00 1903.0
34 TraesCS3D01G179700 chr3B 88.717 452 44 3 1175 1619 237973474 237973023 2.290000e-151 545.0
35 TraesCS3D01G179700 chr3B 90.935 353 15 2 541 892 238115820 238115484 3.060000e-125 459.0
36 TraesCS3D01G179700 chr3B 89.844 128 11 2 3244 3369 237971342 237971215 2.690000e-36 163.0
37 TraesCS3D01G179700 chr3B 89.691 97 9 1 996 1092 237973768 237973673 4.560000e-24 122.0
38 TraesCS3D01G179700 chr3B 90.476 63 5 1 1030 1091 237734525 237734463 7.750000e-12 82.4
39 TraesCS3D01G179700 chr3B 95.455 44 2 0 3161 3204 237971396 237971353 1.680000e-08 71.3
40 TraesCS3D01G179700 chr3B 97.500 40 1 0 3165 3204 237732230 237732191 6.030000e-08 69.4
41 TraesCS3D01G179700 chr6D 95.464 485 21 1 1 484 51202101 51202585 0.000000e+00 773.0
42 TraesCS3D01G179700 chr6D 94.410 483 26 1 3 484 119364840 119365322 0.000000e+00 741.0
43 TraesCS3D01G179700 chr6D 94.410 483 26 1 3 484 288797276 288797758 0.000000e+00 741.0
44 TraesCS3D01G179700 chr6D 95.455 66 2 1 478 543 102797977 102797913 1.650000e-18 104.0
45 TraesCS3D01G179700 chr1D 94.835 484 24 1 2 484 183183302 183182819 0.000000e+00 754.0
46 TraesCS3D01G179700 chr1D 91.620 179 14 1 626 803 238940203 238940381 2.600000e-61 246.0
47 TraesCS3D01G179700 chr1D 95.652 69 2 1 478 546 148817406 148817473 3.550000e-20 110.0
48 TraesCS3D01G179700 chr7D 94.824 483 24 1 3 484 244724062 244724544 0.000000e+00 752.0
49 TraesCS3D01G179700 chr7D 91.477 176 10 3 632 803 631843431 631843605 1.560000e-58 237.0
50 TraesCS3D01G179700 chr7D 88.718 195 17 4 615 809 456095336 456095525 2.020000e-57 233.0
51 TraesCS3D01G179700 chr2A 94.617 483 25 1 3 484 541155763 541155281 0.000000e+00 747.0
52 TraesCS3D01G179700 chr2A 91.525 177 13 2 628 803 694454268 694454093 3.360000e-60 243.0
53 TraesCS3D01G179700 chr2A 90.230 174 15 2 630 802 94112378 94112550 3.380000e-55 226.0
54 TraesCS3D01G179700 chr7B 94.433 485 26 1 1 484 231681334 231681818 0.000000e+00 745.0
55 TraesCS3D01G179700 chr7B 95.522 67 2 1 478 544 81665635 81665570 4.600000e-19 106.0
56 TraesCS3D01G179700 chr2D 94.433 485 26 1 1 484 398033677 398033193 0.000000e+00 745.0
57 TraesCS3D01G179700 chr2D 94.606 482 25 1 3 483 490686753 490687234 0.000000e+00 745.0
58 TraesCS3D01G179700 chr2D 92.090 177 12 2 628 803 554128383 554128208 7.220000e-62 248.0
59 TraesCS3D01G179700 chr6B 95.122 164 8 0 639 802 171210865 171210702 3.330000e-65 259.0
60 TraesCS3D01G179700 chr4B 88.557 201 17 6 639 839 71600787 71600593 4.340000e-59 239.0
61 TraesCS3D01G179700 chr4B 95.455 66 2 1 478 543 49849562 49849626 1.650000e-18 104.0
62 TraesCS3D01G179700 chr5D 88.000 200 22 2 639 837 12986005 12985807 5.620000e-58 235.0
63 TraesCS3D01G179700 chr6A 94.366 71 2 2 478 547 37857880 37857811 1.280000e-19 108.0
64 TraesCS3D01G179700 chr6A 95.455 66 2 1 478 543 299706621 299706557 1.650000e-18 104.0
65 TraesCS3D01G179700 chr5B 94.286 70 3 1 478 547 262448283 262448215 4.600000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G179700 chr3D 161594480 161597848 3368 True 6222.000000 6222 100.000000 1 3369 1 chr3D.!!$R1 3368
1 TraesCS3D01G179700 chr3D 161496207 161498731 2524 True 1117.966667 2704 92.889333 1030 3369 3 chr3D.!!$R4 2339
2 TraesCS3D01G179700 chr3D 161399570 161402712 3142 True 724.225000 2468 91.221750 1030 3369 4 chr3D.!!$R3 2339
3 TraesCS3D01G179700 chr3A 190226764 190229644 2880 True 2256.000000 4015 93.773500 544 3369 2 chr3A.!!$R5 2825
4 TraesCS3D01G179700 chr3A 191251638 191254224 2586 True 2040.500000 3707 96.311000 912 3369 2 chr3A.!!$R7 2457
5 TraesCS3D01G179700 chr3A 191004853 191007568 2715 True 1529.000000 2518 90.613500 1175 3369 2 chr3A.!!$R6 2194
6 TraesCS3D01G179700 chr3A 190582605 190583542 937 True 1290.000000 1290 91.622000 544 1476 1 chr3A.!!$R1 932
7 TraesCS3D01G179700 chr3A 190092361 190094897 2536 True 655.225000 2279 90.014750 996 3369 4 chr3A.!!$R4 2373
8 TraesCS3D01G179700 chr3A 188112420 188114322 1902 False 567.350000 1358 89.827250 1367 3369 4 chr3A.!!$F4 2002
9 TraesCS3D01G179700 chr3B 238111443 238115820 4377 True 2136.500000 3814 93.553500 541 3330 2 chr3B.!!$R3 2789
10 TraesCS3D01G179700 chr3B 237732191 237734525 2334 True 759.933333 2128 91.955000 1030 3204 3 chr3B.!!$R1 2174
11 TraesCS3D01G179700 chr3B 237971215 237973768 2553 True 560.860000 1903 90.530600 996 3369 5 chr3B.!!$R2 2373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.255890 GTCAGCAAAGATAGGGGGCA 59.744 55.0 0.0 0.00 0.00 5.36 F
311 312 0.396278 AGCAAAGATAGGGGGCAAGC 60.396 55.0 0.0 0.00 0.00 4.01 F
322 323 0.527565 GGGGCAAGCACTACATGTTG 59.472 55.0 2.3 4.29 0.00 3.33 F
2147 5120 0.803117 TCGTAGTGGAGCACTTCTCG 59.197 55.0 0.0 0.00 42.59 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 3994 1.724582 GGAACCAATCGCCCATTCCG 61.725 60.000 0.00 0.00 30.17 4.30 R
2027 4997 2.142357 GAACCAAGAAACGGCCAGGC 62.142 60.000 1.26 1.26 0.00 4.85 R
2209 5182 3.921677 AGGCAATGCTTTTCACAGATTG 58.078 40.909 4.82 0.00 0.00 2.67 R
3260 6475 6.479990 CCTTGAGCGTATTTCTCATCACATAA 59.520 38.462 0.00 0.00 39.96 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.305201 AATGCAAAGGAACGTCACGT 58.695 45.000 0.00 0.00 43.97 4.49
29 30 2.456000 ACGTCACGTTGCATCATCC 58.544 52.632 0.00 0.00 36.35 3.51
30 31 1.019278 ACGTCACGTTGCATCATCCC 61.019 55.000 0.00 0.00 36.35 3.85
31 32 0.740868 CGTCACGTTGCATCATCCCT 60.741 55.000 0.00 0.00 0.00 4.20
32 33 1.453155 GTCACGTTGCATCATCCCTT 58.547 50.000 0.00 0.00 0.00 3.95
33 34 1.131126 GTCACGTTGCATCATCCCTTG 59.869 52.381 0.00 0.00 0.00 3.61
34 35 1.167851 CACGTTGCATCATCCCTTGT 58.832 50.000 0.00 0.00 0.00 3.16
35 36 1.135603 CACGTTGCATCATCCCTTGTG 60.136 52.381 0.00 0.00 0.00 3.33
36 37 1.271325 ACGTTGCATCATCCCTTGTGA 60.271 47.619 0.00 0.00 0.00 3.58
37 38 2.019249 CGTTGCATCATCCCTTGTGAT 58.981 47.619 0.00 0.00 36.79 3.06
38 39 3.205338 CGTTGCATCATCCCTTGTGATA 58.795 45.455 0.00 0.00 34.68 2.15
39 40 3.249320 CGTTGCATCATCCCTTGTGATAG 59.751 47.826 0.00 0.00 34.68 2.08
40 41 2.854963 TGCATCATCCCTTGTGATAGC 58.145 47.619 0.00 0.00 34.68 2.97
41 42 1.802960 GCATCATCCCTTGTGATAGCG 59.197 52.381 0.00 0.00 34.68 4.26
42 43 2.548707 GCATCATCCCTTGTGATAGCGA 60.549 50.000 0.00 0.00 34.68 4.93
43 44 2.890808 TCATCCCTTGTGATAGCGAC 57.109 50.000 0.00 0.00 0.00 5.19
44 45 1.412710 TCATCCCTTGTGATAGCGACC 59.587 52.381 0.00 0.00 0.00 4.79
45 46 1.414181 CATCCCTTGTGATAGCGACCT 59.586 52.381 0.00 0.00 0.00 3.85
46 47 1.568504 TCCCTTGTGATAGCGACCTT 58.431 50.000 0.00 0.00 0.00 3.50
47 48 1.906574 TCCCTTGTGATAGCGACCTTT 59.093 47.619 0.00 0.00 0.00 3.11
48 49 3.101437 TCCCTTGTGATAGCGACCTTTA 58.899 45.455 0.00 0.00 0.00 1.85
49 50 3.709653 TCCCTTGTGATAGCGACCTTTAT 59.290 43.478 0.00 0.00 0.00 1.40
50 51 4.163458 TCCCTTGTGATAGCGACCTTTATT 59.837 41.667 0.00 0.00 0.00 1.40
51 52 5.364446 TCCCTTGTGATAGCGACCTTTATTA 59.636 40.000 0.00 0.00 0.00 0.98
52 53 6.042781 TCCCTTGTGATAGCGACCTTTATTAT 59.957 38.462 0.00 0.00 0.00 1.28
53 54 6.147821 CCCTTGTGATAGCGACCTTTATTATG 59.852 42.308 0.00 0.00 0.00 1.90
54 55 6.347725 CCTTGTGATAGCGACCTTTATTATGC 60.348 42.308 0.00 0.00 0.00 3.14
55 56 5.606505 TGTGATAGCGACCTTTATTATGCA 58.393 37.500 0.00 0.00 0.00 3.96
56 57 5.696270 TGTGATAGCGACCTTTATTATGCAG 59.304 40.000 0.00 0.00 0.00 4.41
57 58 5.696724 GTGATAGCGACCTTTATTATGCAGT 59.303 40.000 0.00 0.00 0.00 4.40
58 59 5.926542 TGATAGCGACCTTTATTATGCAGTC 59.073 40.000 0.00 0.00 0.00 3.51
59 60 4.408182 AGCGACCTTTATTATGCAGTCT 57.592 40.909 0.00 0.00 0.00 3.24
60 61 4.122776 AGCGACCTTTATTATGCAGTCTG 58.877 43.478 0.00 0.00 0.00 3.51
61 62 3.303395 GCGACCTTTATTATGCAGTCTGC 60.303 47.826 18.32 18.32 45.29 4.26
62 63 4.122776 CGACCTTTATTATGCAGTCTGCT 58.877 43.478 24.76 13.11 45.31 4.24
63 64 4.025396 CGACCTTTATTATGCAGTCTGCTG 60.025 45.833 24.76 5.69 45.31 4.41
76 77 5.618056 CAGTCTGCTGCTTTTATTCTTCA 57.382 39.130 0.00 0.00 35.77 3.02
77 78 5.388944 CAGTCTGCTGCTTTTATTCTTCAC 58.611 41.667 0.00 0.00 35.77 3.18
78 79 4.457257 AGTCTGCTGCTTTTATTCTTCACC 59.543 41.667 0.00 0.00 0.00 4.02
79 80 4.216257 GTCTGCTGCTTTTATTCTTCACCA 59.784 41.667 0.00 0.00 0.00 4.17
80 81 5.012239 TCTGCTGCTTTTATTCTTCACCAT 58.988 37.500 0.00 0.00 0.00 3.55
81 82 5.124457 TCTGCTGCTTTTATTCTTCACCATC 59.876 40.000 0.00 0.00 0.00 3.51
82 83 4.766373 TGCTGCTTTTATTCTTCACCATCA 59.234 37.500 0.00 0.00 0.00 3.07
83 84 5.419788 TGCTGCTTTTATTCTTCACCATCAT 59.580 36.000 0.00 0.00 0.00 2.45
84 85 6.602803 TGCTGCTTTTATTCTTCACCATCATA 59.397 34.615 0.00 0.00 0.00 2.15
85 86 7.122501 TGCTGCTTTTATTCTTCACCATCATAA 59.877 33.333 0.00 0.00 0.00 1.90
86 87 7.646922 GCTGCTTTTATTCTTCACCATCATAAG 59.353 37.037 0.00 0.00 0.00 1.73
87 88 8.579850 TGCTTTTATTCTTCACCATCATAAGT 57.420 30.769 0.00 0.00 0.00 2.24
88 89 9.023962 TGCTTTTATTCTTCACCATCATAAGTT 57.976 29.630 0.00 0.00 0.00 2.66
89 90 9.508567 GCTTTTATTCTTCACCATCATAAGTTC 57.491 33.333 0.00 0.00 0.00 3.01
90 91 9.708222 CTTTTATTCTTCACCATCATAAGTTCG 57.292 33.333 0.00 0.00 0.00 3.95
91 92 8.786826 TTTATTCTTCACCATCATAAGTTCGT 57.213 30.769 0.00 0.00 0.00 3.85
92 93 6.668541 ATTCTTCACCATCATAAGTTCGTG 57.331 37.500 0.00 0.00 0.00 4.35
93 94 3.932710 TCTTCACCATCATAAGTTCGTGC 59.067 43.478 0.00 0.00 0.00 5.34
94 95 3.326836 TCACCATCATAAGTTCGTGCA 57.673 42.857 0.00 0.00 0.00 4.57
95 96 3.669536 TCACCATCATAAGTTCGTGCAA 58.330 40.909 0.00 0.00 0.00 4.08
96 97 3.435327 TCACCATCATAAGTTCGTGCAAC 59.565 43.478 0.00 0.00 34.86 4.17
110 111 3.273919 GTGCAACGCTCAATTTTCTCT 57.726 42.857 0.00 0.00 0.00 3.10
111 112 3.632189 GTGCAACGCTCAATTTTCTCTT 58.368 40.909 0.00 0.00 0.00 2.85
112 113 4.783242 GTGCAACGCTCAATTTTCTCTTA 58.217 39.130 0.00 0.00 0.00 2.10
113 114 4.613031 GTGCAACGCTCAATTTTCTCTTAC 59.387 41.667 0.00 0.00 0.00 2.34
114 115 4.274705 TGCAACGCTCAATTTTCTCTTACA 59.725 37.500 0.00 0.00 0.00 2.41
115 116 4.613031 GCAACGCTCAATTTTCTCTTACAC 59.387 41.667 0.00 0.00 0.00 2.90
116 117 5.560953 GCAACGCTCAATTTTCTCTTACACT 60.561 40.000 0.00 0.00 0.00 3.55
117 118 6.347402 GCAACGCTCAATTTTCTCTTACACTA 60.347 38.462 0.00 0.00 0.00 2.74
118 119 7.572759 CAACGCTCAATTTTCTCTTACACTAA 58.427 34.615 0.00 0.00 0.00 2.24
119 120 7.724305 ACGCTCAATTTTCTCTTACACTAAA 57.276 32.000 0.00 0.00 0.00 1.85
120 121 8.324163 ACGCTCAATTTTCTCTTACACTAAAT 57.676 30.769 0.00 0.00 0.00 1.40
121 122 8.230486 ACGCTCAATTTTCTCTTACACTAAATG 58.770 33.333 0.00 0.00 0.00 2.32
122 123 8.443160 CGCTCAATTTTCTCTTACACTAAATGA 58.557 33.333 0.00 0.00 0.00 2.57
150 151 9.822185 ATCACACTTTTAGAAGCAATTTTTCTT 57.178 25.926 7.15 0.00 36.38 2.52
151 152 9.086336 TCACACTTTTAGAAGCAATTTTTCTTG 57.914 29.630 7.15 3.23 36.38 3.02
162 163 5.273170 GCAATTTTTCTTGCCTTTTTCACC 58.727 37.500 0.00 0.00 44.56 4.02
163 164 5.500825 CAATTTTTCTTGCCTTTTTCACCG 58.499 37.500 0.00 0.00 0.00 4.94
164 165 4.457834 TTTTTCTTGCCTTTTTCACCGA 57.542 36.364 0.00 0.00 0.00 4.69
165 166 4.664150 TTTTCTTGCCTTTTTCACCGAT 57.336 36.364 0.00 0.00 0.00 4.18
166 167 5.776173 TTTTCTTGCCTTTTTCACCGATA 57.224 34.783 0.00 0.00 0.00 2.92
167 168 5.776173 TTTCTTGCCTTTTTCACCGATAA 57.224 34.783 0.00 0.00 0.00 1.75
168 169 4.759516 TCTTGCCTTTTTCACCGATAAC 57.240 40.909 0.00 0.00 0.00 1.89
169 170 4.138290 TCTTGCCTTTTTCACCGATAACA 58.862 39.130 0.00 0.00 0.00 2.41
170 171 4.580995 TCTTGCCTTTTTCACCGATAACAA 59.419 37.500 0.00 0.00 0.00 2.83
171 172 4.231718 TGCCTTTTTCACCGATAACAAC 57.768 40.909 0.00 0.00 0.00 3.32
172 173 3.886505 TGCCTTTTTCACCGATAACAACT 59.113 39.130 0.00 0.00 0.00 3.16
173 174 4.339814 TGCCTTTTTCACCGATAACAACTT 59.660 37.500 0.00 0.00 0.00 2.66
174 175 5.531659 TGCCTTTTTCACCGATAACAACTTA 59.468 36.000 0.00 0.00 0.00 2.24
175 176 5.854866 GCCTTTTTCACCGATAACAACTTAC 59.145 40.000 0.00 0.00 0.00 2.34
176 177 6.293790 GCCTTTTTCACCGATAACAACTTACT 60.294 38.462 0.00 0.00 0.00 2.24
177 178 7.645402 CCTTTTTCACCGATAACAACTTACTT 58.355 34.615 0.00 0.00 0.00 2.24
178 179 7.589954 CCTTTTTCACCGATAACAACTTACTTG 59.410 37.037 0.00 0.00 35.77 3.16
179 180 7.789273 TTTTCACCGATAACAACTTACTTGA 57.211 32.000 0.00 0.00 33.59 3.02
180 181 7.416154 TTTCACCGATAACAACTTACTTGAG 57.584 36.000 0.00 0.00 33.59 3.02
181 182 5.475719 TCACCGATAACAACTTACTTGAGG 58.524 41.667 0.00 0.00 33.59 3.86
182 183 4.630069 CACCGATAACAACTTACTTGAGGG 59.370 45.833 0.00 0.00 33.59 4.30
183 184 4.529377 ACCGATAACAACTTACTTGAGGGA 59.471 41.667 0.00 0.00 33.59 4.20
184 185 5.189145 ACCGATAACAACTTACTTGAGGGAT 59.811 40.000 0.00 0.00 33.59 3.85
185 186 5.753921 CCGATAACAACTTACTTGAGGGATC 59.246 44.000 0.00 0.00 33.59 3.36
186 187 6.407074 CCGATAACAACTTACTTGAGGGATCT 60.407 42.308 0.00 0.00 33.59 2.75
187 188 7.042335 CGATAACAACTTACTTGAGGGATCTT 58.958 38.462 0.00 0.00 33.59 2.40
188 189 7.010552 CGATAACAACTTACTTGAGGGATCTTG 59.989 40.741 0.00 0.00 33.59 3.02
189 190 4.327680 ACAACTTACTTGAGGGATCTTGC 58.672 43.478 0.00 0.00 33.59 4.01
190 191 4.042187 ACAACTTACTTGAGGGATCTTGCT 59.958 41.667 0.00 0.00 33.59 3.91
191 192 4.479786 ACTTACTTGAGGGATCTTGCTC 57.520 45.455 0.00 0.00 0.00 4.26
192 193 3.840666 ACTTACTTGAGGGATCTTGCTCA 59.159 43.478 0.00 0.00 0.00 4.26
193 194 4.287067 ACTTACTTGAGGGATCTTGCTCAA 59.713 41.667 0.00 0.00 35.02 3.02
194 195 5.045286 ACTTACTTGAGGGATCTTGCTCAAT 60.045 40.000 0.00 0.00 35.62 2.57
195 196 3.883669 ACTTGAGGGATCTTGCTCAATC 58.116 45.455 0.00 0.00 35.62 2.67
196 197 3.212685 CTTGAGGGATCTTGCTCAATCC 58.787 50.000 0.00 3.94 40.69 3.01
201 202 3.415457 GGATCTTGCTCAATCCCTAGG 57.585 52.381 0.06 0.06 36.26 3.02
202 203 2.708325 GGATCTTGCTCAATCCCTAGGT 59.292 50.000 8.29 0.00 36.26 3.08
203 204 3.904339 GGATCTTGCTCAATCCCTAGGTA 59.096 47.826 8.29 0.00 36.26 3.08
204 205 4.020662 GGATCTTGCTCAATCCCTAGGTAG 60.021 50.000 8.29 0.00 36.26 3.18
205 206 3.309296 TCTTGCTCAATCCCTAGGTAGG 58.691 50.000 8.29 0.00 43.25 3.18
206 207 2.868964 TGCTCAATCCCTAGGTAGGT 57.131 50.000 8.29 0.00 42.03 3.08
207 208 3.985553 TGCTCAATCCCTAGGTAGGTA 57.014 47.619 8.29 0.00 42.03 3.08
208 209 4.487282 TGCTCAATCCCTAGGTAGGTAT 57.513 45.455 8.29 0.00 42.03 2.73
209 210 4.160329 TGCTCAATCCCTAGGTAGGTATG 58.840 47.826 8.29 0.00 42.03 2.39
210 211 4.140782 TGCTCAATCCCTAGGTAGGTATGA 60.141 45.833 8.29 2.80 42.03 2.15
211 212 5.026790 GCTCAATCCCTAGGTAGGTATGAT 58.973 45.833 8.29 0.00 42.03 2.45
212 213 5.105146 GCTCAATCCCTAGGTAGGTATGATG 60.105 48.000 8.29 0.00 42.03 3.07
213 214 5.342017 TCAATCCCTAGGTAGGTATGATGG 58.658 45.833 8.29 0.00 42.03 3.51
214 215 5.077300 TCAATCCCTAGGTAGGTATGATGGA 59.923 44.000 8.29 1.60 42.03 3.41
215 216 4.399483 TCCCTAGGTAGGTATGATGGAC 57.601 50.000 8.29 0.00 42.03 4.02
216 217 3.730594 TCCCTAGGTAGGTATGATGGACA 59.269 47.826 8.29 0.00 42.03 4.02
217 218 3.833070 CCCTAGGTAGGTATGATGGACAC 59.167 52.174 8.29 0.00 42.03 3.67
218 219 4.449376 CCCTAGGTAGGTATGATGGACACT 60.449 50.000 8.29 0.00 42.03 3.55
219 220 5.148502 CCTAGGTAGGTATGATGGACACTT 58.851 45.833 0.00 0.00 38.69 3.16
220 221 5.011125 CCTAGGTAGGTATGATGGACACTTG 59.989 48.000 0.00 0.00 38.69 3.16
221 222 4.620723 AGGTAGGTATGATGGACACTTGA 58.379 43.478 0.00 0.00 0.00 3.02
222 223 5.030147 AGGTAGGTATGATGGACACTTGAA 58.970 41.667 0.00 0.00 0.00 2.69
223 224 5.487488 AGGTAGGTATGATGGACACTTGAAA 59.513 40.000 0.00 0.00 0.00 2.69
224 225 6.012858 AGGTAGGTATGATGGACACTTGAAAA 60.013 38.462 0.00 0.00 0.00 2.29
225 226 6.828785 GGTAGGTATGATGGACACTTGAAAAT 59.171 38.462 0.00 0.00 0.00 1.82
226 227 7.990886 GGTAGGTATGATGGACACTTGAAAATA 59.009 37.037 0.00 0.00 0.00 1.40
227 228 9.391006 GTAGGTATGATGGACACTTGAAAATAA 57.609 33.333 0.00 0.00 0.00 1.40
228 229 8.511604 AGGTATGATGGACACTTGAAAATAAG 57.488 34.615 0.00 0.00 0.00 1.73
229 230 8.328758 AGGTATGATGGACACTTGAAAATAAGA 58.671 33.333 0.00 0.00 0.00 2.10
230 231 9.125026 GGTATGATGGACACTTGAAAATAAGAT 57.875 33.333 0.00 0.00 0.00 2.40
233 234 9.865321 ATGATGGACACTTGAAAATAAGATTTG 57.135 29.630 0.00 0.00 0.00 2.32
234 235 8.306038 TGATGGACACTTGAAAATAAGATTTGG 58.694 33.333 0.00 0.00 0.00 3.28
235 236 7.831691 TGGACACTTGAAAATAAGATTTGGA 57.168 32.000 0.00 0.00 0.00 3.53
236 237 8.421249 TGGACACTTGAAAATAAGATTTGGAT 57.579 30.769 0.00 0.00 0.00 3.41
237 238 8.869109 TGGACACTTGAAAATAAGATTTGGATT 58.131 29.630 0.00 0.00 0.00 3.01
238 239 9.710900 GGACACTTGAAAATAAGATTTGGATTT 57.289 29.630 0.00 0.00 0.00 2.17
253 254 9.933723 AGATTTGGATTTAAGAGTTTTTGGATG 57.066 29.630 0.00 0.00 0.00 3.51
254 255 7.961325 TTTGGATTTAAGAGTTTTTGGATGC 57.039 32.000 0.00 0.00 0.00 3.91
255 256 6.662865 TGGATTTAAGAGTTTTTGGATGCA 57.337 33.333 0.00 0.00 0.00 3.96
256 257 6.454795 TGGATTTAAGAGTTTTTGGATGCAC 58.545 36.000 0.00 0.00 0.00 4.57
257 258 6.041409 TGGATTTAAGAGTTTTTGGATGCACA 59.959 34.615 0.00 0.00 0.00 4.57
258 259 6.928492 GGATTTAAGAGTTTTTGGATGCACAA 59.072 34.615 0.00 0.00 0.00 3.33
259 260 7.116805 GGATTTAAGAGTTTTTGGATGCACAAG 59.883 37.037 0.00 0.00 0.00 3.16
260 261 6.463995 TTAAGAGTTTTTGGATGCACAAGT 57.536 33.333 0.00 0.00 0.00 3.16
261 262 7.575414 TTAAGAGTTTTTGGATGCACAAGTA 57.425 32.000 0.00 0.00 0.00 2.24
262 263 5.695851 AGAGTTTTTGGATGCACAAGTAG 57.304 39.130 0.00 0.00 0.00 2.57
263 264 5.133221 AGAGTTTTTGGATGCACAAGTAGT 58.867 37.500 0.00 0.00 0.00 2.73
264 265 6.296026 AGAGTTTTTGGATGCACAAGTAGTA 58.704 36.000 0.00 0.00 0.00 1.82
265 266 6.942576 AGAGTTTTTGGATGCACAAGTAGTAT 59.057 34.615 0.00 0.00 0.00 2.12
266 267 7.119846 AGAGTTTTTGGATGCACAAGTAGTATC 59.880 37.037 0.00 0.00 0.00 2.24
267 268 6.942576 AGTTTTTGGATGCACAAGTAGTATCT 59.057 34.615 0.00 0.00 0.00 1.98
268 269 6.985188 TTTTGGATGCACAAGTAGTATCTC 57.015 37.500 0.00 0.00 0.00 2.75
269 270 5.939764 TTGGATGCACAAGTAGTATCTCT 57.060 39.130 0.00 0.00 0.00 3.10
270 271 7.418337 TTTGGATGCACAAGTAGTATCTCTA 57.582 36.000 0.00 0.00 0.00 2.43
271 272 6.392625 TGGATGCACAAGTAGTATCTCTAC 57.607 41.667 0.00 0.00 46.68 2.59
282 283 6.857777 GTAGTATCTCTACTTAGTGCGGAA 57.142 41.667 0.00 0.00 43.93 4.30
283 284 7.437793 GTAGTATCTCTACTTAGTGCGGAAT 57.562 40.000 0.00 0.00 43.93 3.01
284 285 6.963083 AGTATCTCTACTTAGTGCGGAATT 57.037 37.500 0.00 0.00 34.42 2.17
285 286 7.349412 AGTATCTCTACTTAGTGCGGAATTT 57.651 36.000 0.00 0.00 34.42 1.82
286 287 7.783042 AGTATCTCTACTTAGTGCGGAATTTT 58.217 34.615 0.00 0.00 34.42 1.82
287 288 8.258708 AGTATCTCTACTTAGTGCGGAATTTTT 58.741 33.333 0.00 0.00 34.42 1.94
288 289 6.721571 TCTCTACTTAGTGCGGAATTTTTG 57.278 37.500 0.00 0.00 0.00 2.44
289 290 5.642063 TCTCTACTTAGTGCGGAATTTTTGG 59.358 40.000 0.00 0.00 0.00 3.28
290 291 5.310451 TCTACTTAGTGCGGAATTTTTGGT 58.690 37.500 0.00 0.00 0.00 3.67
291 292 4.499037 ACTTAGTGCGGAATTTTTGGTC 57.501 40.909 0.00 0.00 0.00 4.02
292 293 3.886505 ACTTAGTGCGGAATTTTTGGTCA 59.113 39.130 0.00 0.00 0.00 4.02
293 294 4.023193 ACTTAGTGCGGAATTTTTGGTCAG 60.023 41.667 0.00 0.00 0.00 3.51
294 295 1.000274 AGTGCGGAATTTTTGGTCAGC 60.000 47.619 0.00 0.00 0.00 4.26
295 296 1.035923 TGCGGAATTTTTGGTCAGCA 58.964 45.000 0.00 0.00 0.00 4.41
296 297 1.410517 TGCGGAATTTTTGGTCAGCAA 59.589 42.857 0.00 0.00 31.11 3.91
297 298 2.159043 TGCGGAATTTTTGGTCAGCAAA 60.159 40.909 0.00 0.00 31.11 3.68
298 299 2.476241 GCGGAATTTTTGGTCAGCAAAG 59.524 45.455 1.64 0.00 0.00 2.77
299 300 3.798548 GCGGAATTTTTGGTCAGCAAAGA 60.799 43.478 1.64 0.00 0.00 2.52
300 301 4.559153 CGGAATTTTTGGTCAGCAAAGAT 58.441 39.130 1.64 0.56 0.00 2.40
301 302 5.708948 CGGAATTTTTGGTCAGCAAAGATA 58.291 37.500 5.83 0.00 0.00 1.98
302 303 5.801947 CGGAATTTTTGGTCAGCAAAGATAG 59.198 40.000 5.83 0.00 0.00 2.08
303 304 6.101997 GGAATTTTTGGTCAGCAAAGATAGG 58.898 40.000 5.83 0.00 0.00 2.57
304 305 5.665916 ATTTTTGGTCAGCAAAGATAGGG 57.334 39.130 3.61 0.00 0.00 3.53
305 306 2.806945 TTGGTCAGCAAAGATAGGGG 57.193 50.000 0.00 0.00 0.00 4.79
306 307 0.918983 TGGTCAGCAAAGATAGGGGG 59.081 55.000 0.00 0.00 0.00 5.40
307 308 0.466372 GGTCAGCAAAGATAGGGGGC 60.466 60.000 0.00 0.00 0.00 5.80
308 309 0.255890 GTCAGCAAAGATAGGGGGCA 59.744 55.000 0.00 0.00 0.00 5.36
309 310 0.998928 TCAGCAAAGATAGGGGGCAA 59.001 50.000 0.00 0.00 0.00 4.52
310 311 1.064463 TCAGCAAAGATAGGGGGCAAG 60.064 52.381 0.00 0.00 0.00 4.01
311 312 0.396278 AGCAAAGATAGGGGGCAAGC 60.396 55.000 0.00 0.00 0.00 4.01
312 313 0.684153 GCAAAGATAGGGGGCAAGCA 60.684 55.000 0.00 0.00 0.00 3.91
313 314 1.106285 CAAAGATAGGGGGCAAGCAC 58.894 55.000 0.00 0.00 0.00 4.40
314 315 1.002857 AAAGATAGGGGGCAAGCACT 58.997 50.000 0.00 0.00 0.00 4.40
315 316 1.893315 AAGATAGGGGGCAAGCACTA 58.107 50.000 0.00 0.00 0.00 2.74
316 317 1.132500 AGATAGGGGGCAAGCACTAC 58.868 55.000 0.00 0.00 0.00 2.73
317 318 0.837272 GATAGGGGGCAAGCACTACA 59.163 55.000 0.00 0.00 0.00 2.74
318 319 1.421646 GATAGGGGGCAAGCACTACAT 59.578 52.381 0.00 0.00 0.00 2.29
319 320 0.546122 TAGGGGGCAAGCACTACATG 59.454 55.000 0.00 0.00 0.00 3.21
320 321 1.000896 GGGGGCAAGCACTACATGT 60.001 57.895 2.69 2.69 0.00 3.21
321 322 0.611896 GGGGGCAAGCACTACATGTT 60.612 55.000 2.30 0.00 0.00 2.71
322 323 0.527565 GGGGCAAGCACTACATGTTG 59.472 55.000 2.30 4.29 0.00 3.33
323 324 1.533625 GGGCAAGCACTACATGTTGA 58.466 50.000 14.37 0.00 0.00 3.18
324 325 1.885887 GGGCAAGCACTACATGTTGAA 59.114 47.619 14.37 0.00 0.00 2.69
325 326 2.095059 GGGCAAGCACTACATGTTGAAG 60.095 50.000 14.37 3.35 0.00 3.02
326 327 2.095059 GGCAAGCACTACATGTTGAAGG 60.095 50.000 14.37 4.48 0.00 3.46
327 328 2.813754 GCAAGCACTACATGTTGAAGGA 59.186 45.455 14.37 0.00 0.00 3.36
328 329 3.441572 GCAAGCACTACATGTTGAAGGAT 59.558 43.478 14.37 0.00 0.00 3.24
329 330 4.437930 GCAAGCACTACATGTTGAAGGATC 60.438 45.833 14.37 0.00 0.00 3.36
330 331 3.878778 AGCACTACATGTTGAAGGATCC 58.121 45.455 14.37 2.48 0.00 3.36
331 332 3.264193 AGCACTACATGTTGAAGGATCCA 59.736 43.478 15.82 0.00 0.00 3.41
332 333 4.080129 AGCACTACATGTTGAAGGATCCAT 60.080 41.667 15.82 0.17 0.00 3.41
333 334 4.036027 GCACTACATGTTGAAGGATCCATG 59.964 45.833 15.82 10.13 40.34 3.66
334 335 5.430886 CACTACATGTTGAAGGATCCATGA 58.569 41.667 15.82 0.00 38.40 3.07
335 336 5.295292 CACTACATGTTGAAGGATCCATGAC 59.705 44.000 15.82 7.52 38.40 3.06
336 337 4.305539 ACATGTTGAAGGATCCATGACA 57.694 40.909 15.82 12.97 38.40 3.58
337 338 4.665451 ACATGTTGAAGGATCCATGACAA 58.335 39.130 15.82 11.11 38.40 3.18
338 339 5.266788 ACATGTTGAAGGATCCATGACAAT 58.733 37.500 15.82 3.70 38.40 2.71
339 340 6.425735 ACATGTTGAAGGATCCATGACAATA 58.574 36.000 15.82 12.19 38.40 1.90
340 341 7.064866 ACATGTTGAAGGATCCATGACAATAT 58.935 34.615 15.82 13.73 38.40 1.28
341 342 6.947644 TGTTGAAGGATCCATGACAATATG 57.052 37.500 15.82 0.00 0.00 1.78
342 343 6.661777 TGTTGAAGGATCCATGACAATATGA 58.338 36.000 15.82 0.00 0.00 2.15
343 344 6.543465 TGTTGAAGGATCCATGACAATATGAC 59.457 38.462 15.82 3.96 0.00 3.06
344 345 6.505048 TGAAGGATCCATGACAATATGACT 57.495 37.500 15.82 0.00 0.00 3.41
345 346 6.903516 TGAAGGATCCATGACAATATGACTT 58.096 36.000 15.82 0.00 0.00 3.01
346 347 6.994496 TGAAGGATCCATGACAATATGACTTC 59.006 38.462 15.82 4.18 32.10 3.01
347 348 6.760440 AGGATCCATGACAATATGACTTCT 57.240 37.500 15.82 0.00 0.00 2.85
348 349 7.862274 AGGATCCATGACAATATGACTTCTA 57.138 36.000 15.82 0.00 0.00 2.10
349 350 8.446714 AGGATCCATGACAATATGACTTCTAT 57.553 34.615 15.82 0.00 0.00 1.98
350 351 8.319881 AGGATCCATGACAATATGACTTCTATG 58.680 37.037 15.82 0.00 0.00 2.23
351 352 8.099537 GGATCCATGACAATATGACTTCTATGT 58.900 37.037 6.95 0.00 0.00 2.29
352 353 8.843885 ATCCATGACAATATGACTTCTATGTG 57.156 34.615 0.00 0.00 0.00 3.21
353 354 8.021898 TCCATGACAATATGACTTCTATGTGA 57.978 34.615 0.00 0.00 0.00 3.58
354 355 8.485392 TCCATGACAATATGACTTCTATGTGAA 58.515 33.333 0.00 0.00 0.00 3.18
355 356 9.281371 CCATGACAATATGACTTCTATGTGAAT 57.719 33.333 0.00 0.00 33.71 2.57
383 384 8.419076 AAACAAACATAAACCATCAAGTTGTC 57.581 30.769 2.11 0.00 0.00 3.18
384 385 7.346751 ACAAACATAAACCATCAAGTTGTCT 57.653 32.000 2.11 0.00 0.00 3.41
385 386 7.781056 ACAAACATAAACCATCAAGTTGTCTT 58.219 30.769 2.11 0.00 0.00 3.01
386 387 7.920682 ACAAACATAAACCATCAAGTTGTCTTC 59.079 33.333 2.11 0.00 0.00 2.87
387 388 6.575162 ACATAAACCATCAAGTTGTCTTCC 57.425 37.500 2.11 0.00 0.00 3.46
388 389 6.306987 ACATAAACCATCAAGTTGTCTTCCT 58.693 36.000 2.11 0.00 0.00 3.36
389 390 6.777580 ACATAAACCATCAAGTTGTCTTCCTT 59.222 34.615 2.11 0.00 0.00 3.36
390 391 5.520376 AAACCATCAAGTTGTCTTCCTTG 57.480 39.130 2.11 0.00 39.50 3.61
391 392 4.170468 ACCATCAAGTTGTCTTCCTTGT 57.830 40.909 2.11 0.00 39.25 3.16
392 393 4.137543 ACCATCAAGTTGTCTTCCTTGTC 58.862 43.478 2.11 0.00 39.25 3.18
393 394 3.503748 CCATCAAGTTGTCTTCCTTGTCC 59.496 47.826 2.11 0.00 39.25 4.02
394 395 3.924114 TCAAGTTGTCTTCCTTGTCCA 57.076 42.857 2.11 0.00 39.25 4.02
395 396 4.229304 TCAAGTTGTCTTCCTTGTCCAA 57.771 40.909 2.11 0.00 39.25 3.53
396 397 3.945285 TCAAGTTGTCTTCCTTGTCCAAC 59.055 43.478 2.11 0.00 39.25 3.77
397 398 2.561569 AGTTGTCTTCCTTGTCCAACG 58.438 47.619 0.00 0.00 40.14 4.10
398 399 2.093128 AGTTGTCTTCCTTGTCCAACGT 60.093 45.455 0.00 0.00 40.14 3.99
399 400 2.234300 TGTCTTCCTTGTCCAACGTC 57.766 50.000 0.00 0.00 0.00 4.34
400 401 1.483004 TGTCTTCCTTGTCCAACGTCA 59.517 47.619 0.00 0.00 0.00 4.35
401 402 2.093394 TGTCTTCCTTGTCCAACGTCAA 60.093 45.455 0.00 0.00 0.00 3.18
402 403 2.287103 GTCTTCCTTGTCCAACGTCAAC 59.713 50.000 0.00 0.00 0.00 3.18
403 404 2.093394 TCTTCCTTGTCCAACGTCAACA 60.093 45.455 0.00 0.00 0.00 3.33
404 405 2.404923 TCCTTGTCCAACGTCAACAA 57.595 45.000 9.21 9.21 0.00 2.83
405 406 2.925724 TCCTTGTCCAACGTCAACAAT 58.074 42.857 9.80 0.00 32.85 2.71
406 407 3.283751 TCCTTGTCCAACGTCAACAATT 58.716 40.909 9.80 0.00 32.85 2.32
407 408 3.697045 TCCTTGTCCAACGTCAACAATTT 59.303 39.130 9.80 0.00 32.85 1.82
408 409 4.158764 TCCTTGTCCAACGTCAACAATTTT 59.841 37.500 9.80 0.00 32.85 1.82
409 410 4.267452 CCTTGTCCAACGTCAACAATTTTG 59.733 41.667 9.80 0.00 32.85 2.44
410 411 3.775202 TGTCCAACGTCAACAATTTTGG 58.225 40.909 0.00 0.00 38.48 3.28
411 412 2.538037 GTCCAACGTCAACAATTTTGGC 59.462 45.455 0.00 0.00 37.27 4.52
412 413 2.166459 TCCAACGTCAACAATTTTGGCA 59.834 40.909 0.00 0.00 37.27 4.92
413 414 3.129871 CCAACGTCAACAATTTTGGCAT 58.870 40.909 0.00 0.00 30.83 4.40
414 415 4.038042 TCCAACGTCAACAATTTTGGCATA 59.962 37.500 0.00 0.00 37.27 3.14
415 416 4.928615 CCAACGTCAACAATTTTGGCATAT 59.071 37.500 0.00 0.00 30.83 1.78
416 417 6.071896 TCCAACGTCAACAATTTTGGCATATA 60.072 34.615 0.00 0.00 37.27 0.86
417 418 6.587990 CCAACGTCAACAATTTTGGCATATAA 59.412 34.615 0.00 0.00 30.83 0.98
418 419 7.277539 CCAACGTCAACAATTTTGGCATATAAT 59.722 33.333 0.00 0.00 30.83 1.28
419 420 9.295214 CAACGTCAACAATTTTGGCATATAATA 57.705 29.630 0.00 0.00 0.00 0.98
432 433 7.408756 TGGCATATAATATTTTGATGAGGGC 57.591 36.000 0.00 0.00 0.00 5.19
433 434 7.184161 TGGCATATAATATTTTGATGAGGGCT 58.816 34.615 0.00 0.00 0.00 5.19
434 435 7.675195 TGGCATATAATATTTTGATGAGGGCTT 59.325 33.333 0.00 0.00 0.00 4.35
435 436 9.189156 GGCATATAATATTTTGATGAGGGCTTA 57.811 33.333 0.00 0.00 0.00 3.09
441 442 8.537728 AATATTTTGATGAGGGCTTACAATCA 57.462 30.769 0.00 0.00 0.00 2.57
442 443 5.643379 TTTTGATGAGGGCTTACAATCAC 57.357 39.130 0.00 0.00 0.00 3.06
443 444 3.998913 TGATGAGGGCTTACAATCACA 57.001 42.857 0.00 0.00 0.00 3.58
444 445 4.299586 TGATGAGGGCTTACAATCACAA 57.700 40.909 0.00 0.00 0.00 3.33
445 446 4.661222 TGATGAGGGCTTACAATCACAAA 58.339 39.130 0.00 0.00 0.00 2.83
446 447 5.076182 TGATGAGGGCTTACAATCACAAAA 58.924 37.500 0.00 0.00 0.00 2.44
447 448 5.183713 TGATGAGGGCTTACAATCACAAAAG 59.816 40.000 0.00 0.00 0.00 2.27
448 449 4.724399 TGAGGGCTTACAATCACAAAAGA 58.276 39.130 0.00 0.00 0.00 2.52
449 450 5.324409 TGAGGGCTTACAATCACAAAAGAT 58.676 37.500 0.00 0.00 0.00 2.40
450 451 5.774690 TGAGGGCTTACAATCACAAAAGATT 59.225 36.000 0.00 0.00 38.72 2.40
451 452 6.267471 TGAGGGCTTACAATCACAAAAGATTT 59.733 34.615 0.00 0.00 36.13 2.17
452 453 6.691508 AGGGCTTACAATCACAAAAGATTTC 58.308 36.000 0.00 0.00 36.13 2.17
453 454 6.494835 AGGGCTTACAATCACAAAAGATTTCT 59.505 34.615 0.00 0.00 36.13 2.52
454 455 7.669722 AGGGCTTACAATCACAAAAGATTTCTA 59.330 33.333 0.00 0.00 36.13 2.10
455 456 7.970614 GGGCTTACAATCACAAAAGATTTCTAG 59.029 37.037 0.00 0.00 36.13 2.43
456 457 7.970614 GGCTTACAATCACAAAAGATTTCTAGG 59.029 37.037 0.00 0.00 36.13 3.02
457 458 8.730680 GCTTACAATCACAAAAGATTTCTAGGA 58.269 33.333 0.00 0.00 36.13 2.94
461 462 9.965902 ACAATCACAAAAGATTTCTAGGATAGT 57.034 29.630 0.00 0.00 36.72 2.12
490 491 8.737168 TTTATATGTGAATCCTCTCAACCAAG 57.263 34.615 0.00 0.00 0.00 3.61
491 492 4.647564 ATGTGAATCCTCTCAACCAAGT 57.352 40.909 0.00 0.00 0.00 3.16
492 493 4.437682 TGTGAATCCTCTCAACCAAGTT 57.562 40.909 0.00 0.00 0.00 2.66
493 494 4.792068 TGTGAATCCTCTCAACCAAGTTT 58.208 39.130 0.00 0.00 0.00 2.66
494 495 4.580167 TGTGAATCCTCTCAACCAAGTTTG 59.420 41.667 0.00 0.00 0.00 2.93
495 496 4.580580 GTGAATCCTCTCAACCAAGTTTGT 59.419 41.667 0.00 0.00 0.00 2.83
496 497 4.821805 TGAATCCTCTCAACCAAGTTTGTC 59.178 41.667 0.00 0.00 0.00 3.18
497 498 2.833794 TCCTCTCAACCAAGTTTGTCG 58.166 47.619 0.00 0.00 0.00 4.35
498 499 2.169769 TCCTCTCAACCAAGTTTGTCGT 59.830 45.455 0.00 0.00 0.00 4.34
499 500 2.544267 CCTCTCAACCAAGTTTGTCGTC 59.456 50.000 0.00 0.00 0.00 4.20
500 501 3.194861 CTCTCAACCAAGTTTGTCGTCA 58.805 45.455 0.00 0.00 0.00 4.35
501 502 3.601435 TCTCAACCAAGTTTGTCGTCAA 58.399 40.909 0.00 0.00 0.00 3.18
502 503 4.196193 TCTCAACCAAGTTTGTCGTCAAT 58.804 39.130 0.00 0.00 33.32 2.57
503 504 5.361427 TCTCAACCAAGTTTGTCGTCAATA 58.639 37.500 0.00 0.00 33.32 1.90
504 505 5.235616 TCTCAACCAAGTTTGTCGTCAATAC 59.764 40.000 0.00 0.00 33.32 1.89
505 506 5.120399 TCAACCAAGTTTGTCGTCAATACT 58.880 37.500 0.00 0.98 33.32 2.12
506 507 5.587043 TCAACCAAGTTTGTCGTCAATACTT 59.413 36.000 12.98 12.98 36.43 2.24
507 508 5.668558 ACCAAGTTTGTCGTCAATACTTC 57.331 39.130 14.65 0.13 35.23 3.01
508 509 5.120399 ACCAAGTTTGTCGTCAATACTTCA 58.880 37.500 14.65 0.00 35.23 3.02
509 510 5.587043 ACCAAGTTTGTCGTCAATACTTCAA 59.413 36.000 14.65 0.00 35.23 2.69
510 511 6.094325 ACCAAGTTTGTCGTCAATACTTCAAA 59.906 34.615 14.65 0.00 35.23 2.69
511 512 6.970043 CCAAGTTTGTCGTCAATACTTCAAAA 59.030 34.615 14.65 0.00 35.23 2.44
512 513 7.044314 CCAAGTTTGTCGTCAATACTTCAAAAC 60.044 37.037 14.65 0.00 35.23 2.43
513 514 6.492254 AGTTTGTCGTCAATACTTCAAAACC 58.508 36.000 0.00 0.00 32.19 3.27
514 515 6.094325 AGTTTGTCGTCAATACTTCAAAACCA 59.906 34.615 0.00 0.00 32.19 3.67
515 516 6.438259 TTGTCGTCAATACTTCAAAACCAA 57.562 33.333 0.00 0.00 0.00 3.67
516 517 6.627395 TGTCGTCAATACTTCAAAACCAAT 57.373 33.333 0.00 0.00 0.00 3.16
517 518 7.033530 TGTCGTCAATACTTCAAAACCAATT 57.966 32.000 0.00 0.00 0.00 2.32
518 519 8.155821 TGTCGTCAATACTTCAAAACCAATTA 57.844 30.769 0.00 0.00 0.00 1.40
519 520 8.286800 TGTCGTCAATACTTCAAAACCAATTAG 58.713 33.333 0.00 0.00 0.00 1.73
520 521 7.749126 GTCGTCAATACTTCAAAACCAATTAGG 59.251 37.037 0.00 0.00 45.67 2.69
521 522 7.027161 CGTCAATACTTCAAAACCAATTAGGG 58.973 38.462 0.00 0.00 43.89 3.53
522 523 7.320399 GTCAATACTTCAAAACCAATTAGGGG 58.680 38.462 0.00 0.00 43.89 4.79
523 524 7.177744 GTCAATACTTCAAAACCAATTAGGGGA 59.822 37.037 0.00 0.00 43.89 4.81
524 525 7.396055 TCAATACTTCAAAACCAATTAGGGGAG 59.604 37.037 0.00 0.00 43.89 4.30
525 526 4.416516 ACTTCAAAACCAATTAGGGGAGG 58.583 43.478 0.00 0.00 43.89 4.30
526 527 2.815158 TCAAAACCAATTAGGGGAGGC 58.185 47.619 0.00 0.00 43.89 4.70
527 528 2.110899 TCAAAACCAATTAGGGGAGGCA 59.889 45.455 0.00 0.00 43.89 4.75
528 529 2.231716 AAACCAATTAGGGGAGGCAC 57.768 50.000 0.00 0.00 43.89 5.01
529 530 1.382914 AACCAATTAGGGGAGGCACT 58.617 50.000 0.00 0.00 43.09 4.40
530 531 2.280308 ACCAATTAGGGGAGGCACTA 57.720 50.000 0.00 0.00 40.51 2.74
531 532 2.127708 ACCAATTAGGGGAGGCACTAG 58.872 52.381 0.00 0.00 40.51 2.57
532 533 2.293586 ACCAATTAGGGGAGGCACTAGA 60.294 50.000 0.00 0.00 40.51 2.43
533 534 2.982488 CCAATTAGGGGAGGCACTAGAT 59.018 50.000 0.00 0.00 41.55 1.98
534 535 3.244700 CCAATTAGGGGAGGCACTAGATG 60.245 52.174 0.00 0.00 41.55 2.90
562 563 5.654603 ACAGTAGACGTATCAACCAATCA 57.345 39.130 0.00 0.00 0.00 2.57
567 568 3.309682 AGACGTATCAACCAATCAATGCG 59.690 43.478 0.00 0.00 34.13 4.73
636 637 5.639082 CACATTGCTGTAACTCTGTACATGA 59.361 40.000 0.00 0.00 33.59 3.07
650 651 3.646162 TGTACATGACACTCCCTCTGTTT 59.354 43.478 0.00 0.00 31.20 2.83
709 710 9.339850 GACTACCACATACGGATGTATATAGAT 57.660 37.037 22.62 12.37 44.82 1.98
892 913 3.243877 CGTCTATCCAGCGAACAAAGATG 59.756 47.826 0.00 0.00 0.00 2.90
971 1564 1.048724 CCCTCCGGATAACTGAGCCA 61.049 60.000 3.57 0.00 30.53 4.75
1007 2635 1.411787 CCCCTCCGGATAAGACTGAGT 60.412 57.143 3.57 0.00 0.00 3.41
1572 3994 1.202475 GCGGTCTTCTCCTCATCCTTC 60.202 57.143 0.00 0.00 0.00 3.46
1674 4629 3.181487 GCATGCGAGTGGGTAATTTCATT 60.181 43.478 0.00 0.00 0.00 2.57
2026 4996 3.329386 ACAACATCAGAGATGTTCACGG 58.671 45.455 19.32 12.35 39.94 4.94
2027 4997 2.674852 CAACATCAGAGATGTTCACGGG 59.325 50.000 19.32 7.37 39.94 5.28
2147 5120 0.803117 TCGTAGTGGAGCACTTCTCG 59.197 55.000 0.00 0.00 42.59 4.04
2157 5130 1.968493 AGCACTTCTCGGTTACCAGAA 59.032 47.619 1.13 8.83 0.00 3.02
2209 5182 1.351017 TGATGACAACCAGGGAAGGAC 59.649 52.381 0.00 0.00 0.00 3.85
3223 6438 9.685828 GAGTTTACTGAAGATCATGGTCTATAC 57.314 37.037 9.40 4.97 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.000815 ACGTGACGTTCCTTTGCAT 57.999 47.368 4.10 0.00 36.35 3.96
2 3 4.524869 ACGTGACGTTCCTTTGCA 57.475 50.000 4.10 0.00 36.35 4.08
11 12 1.019278 GGGATGATGCAACGTGACGT 61.019 55.000 4.10 4.10 43.97 4.34
12 13 0.740868 AGGGATGATGCAACGTGACG 60.741 55.000 2.24 2.24 0.00 4.35
13 14 1.131126 CAAGGGATGATGCAACGTGAC 59.869 52.381 0.00 0.00 0.00 3.67
14 15 1.271325 ACAAGGGATGATGCAACGTGA 60.271 47.619 0.00 0.00 0.00 4.35
15 16 1.135603 CACAAGGGATGATGCAACGTG 60.136 52.381 0.00 0.00 0.00 4.49
16 17 1.167851 CACAAGGGATGATGCAACGT 58.832 50.000 0.00 0.00 0.00 3.99
17 18 1.452110 TCACAAGGGATGATGCAACG 58.548 50.000 0.00 0.00 0.00 4.10
18 19 3.004106 GCTATCACAAGGGATGATGCAAC 59.996 47.826 0.00 0.00 37.38 4.17
19 20 3.216800 GCTATCACAAGGGATGATGCAA 58.783 45.455 0.00 0.00 37.38 4.08
20 21 2.807837 CGCTATCACAAGGGATGATGCA 60.808 50.000 0.00 0.00 37.38 3.96
21 22 1.802960 CGCTATCACAAGGGATGATGC 59.197 52.381 0.00 0.00 37.38 3.91
22 23 3.062763 GTCGCTATCACAAGGGATGATG 58.937 50.000 0.00 0.00 40.16 3.07
23 24 2.037772 GGTCGCTATCACAAGGGATGAT 59.962 50.000 0.00 0.00 40.16 2.45
24 25 1.412710 GGTCGCTATCACAAGGGATGA 59.587 52.381 0.00 0.00 40.16 2.92
25 26 1.414181 AGGTCGCTATCACAAGGGATG 59.586 52.381 0.00 0.00 40.16 3.51
26 27 1.794714 AGGTCGCTATCACAAGGGAT 58.205 50.000 0.00 0.00 40.16 3.85
27 28 1.568504 AAGGTCGCTATCACAAGGGA 58.431 50.000 0.00 0.00 36.22 4.20
28 29 2.403252 AAAGGTCGCTATCACAAGGG 57.597 50.000 0.00 0.00 0.00 3.95
29 30 6.347725 GCATAATAAAGGTCGCTATCACAAGG 60.348 42.308 0.00 0.00 0.00 3.61
30 31 6.202762 TGCATAATAAAGGTCGCTATCACAAG 59.797 38.462 0.00 0.00 0.00 3.16
31 32 6.052360 TGCATAATAAAGGTCGCTATCACAA 58.948 36.000 0.00 0.00 0.00 3.33
32 33 5.606505 TGCATAATAAAGGTCGCTATCACA 58.393 37.500 0.00 0.00 0.00 3.58
33 34 5.696724 ACTGCATAATAAAGGTCGCTATCAC 59.303 40.000 0.00 0.00 0.00 3.06
34 35 5.853936 ACTGCATAATAAAGGTCGCTATCA 58.146 37.500 0.00 0.00 0.00 2.15
35 36 6.090088 CAGACTGCATAATAAAGGTCGCTATC 59.910 42.308 0.00 0.00 0.00 2.08
36 37 5.928839 CAGACTGCATAATAAAGGTCGCTAT 59.071 40.000 0.00 0.00 0.00 2.97
37 38 5.289595 CAGACTGCATAATAAAGGTCGCTA 58.710 41.667 0.00 0.00 0.00 4.26
38 39 4.122776 CAGACTGCATAATAAAGGTCGCT 58.877 43.478 0.00 0.00 0.00 4.93
39 40 3.303395 GCAGACTGCATAATAAAGGTCGC 60.303 47.826 22.62 0.00 44.26 5.19
40 41 4.458951 GCAGACTGCATAATAAAGGTCG 57.541 45.455 22.62 0.00 44.26 4.79
55 56 4.457257 GGTGAAGAATAAAAGCAGCAGACT 59.543 41.667 0.00 0.00 0.00 3.24
56 57 4.216257 TGGTGAAGAATAAAAGCAGCAGAC 59.784 41.667 0.00 0.00 33.63 3.51
57 58 4.397420 TGGTGAAGAATAAAAGCAGCAGA 58.603 39.130 0.00 0.00 33.63 4.26
58 59 4.771590 TGGTGAAGAATAAAAGCAGCAG 57.228 40.909 0.00 0.00 33.63 4.24
59 60 4.766373 TGATGGTGAAGAATAAAAGCAGCA 59.234 37.500 0.00 0.00 40.61 4.41
60 61 5.314923 TGATGGTGAAGAATAAAAGCAGC 57.685 39.130 0.00 0.00 0.00 5.25
61 62 8.680903 ACTTATGATGGTGAAGAATAAAAGCAG 58.319 33.333 0.00 0.00 0.00 4.24
62 63 8.579850 ACTTATGATGGTGAAGAATAAAAGCA 57.420 30.769 0.00 0.00 0.00 3.91
63 64 9.508567 GAACTTATGATGGTGAAGAATAAAAGC 57.491 33.333 0.00 0.00 0.00 3.51
64 65 9.708222 CGAACTTATGATGGTGAAGAATAAAAG 57.292 33.333 0.00 0.00 0.00 2.27
65 66 9.226606 ACGAACTTATGATGGTGAAGAATAAAA 57.773 29.630 0.00 0.00 0.00 1.52
66 67 8.664798 CACGAACTTATGATGGTGAAGAATAAA 58.335 33.333 0.00 0.00 0.00 1.40
67 68 7.201609 GCACGAACTTATGATGGTGAAGAATAA 60.202 37.037 5.47 0.00 0.00 1.40
68 69 6.257849 GCACGAACTTATGATGGTGAAGAATA 59.742 38.462 5.47 0.00 0.00 1.75
69 70 5.065218 GCACGAACTTATGATGGTGAAGAAT 59.935 40.000 5.47 0.00 0.00 2.40
70 71 4.391830 GCACGAACTTATGATGGTGAAGAA 59.608 41.667 5.47 0.00 0.00 2.52
71 72 3.932710 GCACGAACTTATGATGGTGAAGA 59.067 43.478 5.47 0.00 0.00 2.87
72 73 3.684305 TGCACGAACTTATGATGGTGAAG 59.316 43.478 5.47 0.00 0.00 3.02
73 74 3.669536 TGCACGAACTTATGATGGTGAA 58.330 40.909 5.47 0.00 0.00 3.18
74 75 3.326836 TGCACGAACTTATGATGGTGA 57.673 42.857 5.47 0.00 0.00 4.02
75 76 3.724716 CGTTGCACGAACTTATGATGGTG 60.725 47.826 3.04 0.00 46.05 4.17
76 77 2.415168 CGTTGCACGAACTTATGATGGT 59.585 45.455 3.04 0.00 46.05 3.55
77 78 2.787723 GCGTTGCACGAACTTATGATGG 60.788 50.000 11.94 0.00 46.05 3.51
78 79 2.094258 AGCGTTGCACGAACTTATGATG 59.906 45.455 11.94 0.00 46.05 3.07
79 80 2.346803 AGCGTTGCACGAACTTATGAT 58.653 42.857 11.94 0.00 46.05 2.45
80 81 1.724623 GAGCGTTGCACGAACTTATGA 59.275 47.619 11.94 0.00 46.05 2.15
81 82 1.459209 TGAGCGTTGCACGAACTTATG 59.541 47.619 11.94 0.00 46.05 1.90
82 83 1.790755 TGAGCGTTGCACGAACTTAT 58.209 45.000 11.94 0.00 46.05 1.73
83 84 1.573026 TTGAGCGTTGCACGAACTTA 58.427 45.000 11.94 0.00 46.05 2.24
84 85 0.944386 ATTGAGCGTTGCACGAACTT 59.056 45.000 11.94 0.00 46.05 2.66
85 86 0.944386 AATTGAGCGTTGCACGAACT 59.056 45.000 11.94 1.73 46.05 3.01
86 87 1.753956 AAATTGAGCGTTGCACGAAC 58.246 45.000 11.94 0.00 46.05 3.95
87 88 2.032799 AGAAAATTGAGCGTTGCACGAA 59.967 40.909 11.94 0.00 46.05 3.85
88 89 1.601903 AGAAAATTGAGCGTTGCACGA 59.398 42.857 11.94 0.00 46.05 4.35
89 90 1.971962 GAGAAAATTGAGCGTTGCACG 59.028 47.619 4.61 4.61 45.88 5.34
90 91 3.273919 AGAGAAAATTGAGCGTTGCAC 57.726 42.857 0.00 0.00 0.00 4.57
91 92 3.988379 AAGAGAAAATTGAGCGTTGCA 57.012 38.095 0.00 0.00 0.00 4.08
92 93 4.613031 GTGTAAGAGAAAATTGAGCGTTGC 59.387 41.667 0.00 0.00 0.00 4.17
93 94 5.990408 AGTGTAAGAGAAAATTGAGCGTTG 58.010 37.500 0.00 0.00 0.00 4.10
94 95 7.724305 TTAGTGTAAGAGAAAATTGAGCGTT 57.276 32.000 0.00 0.00 0.00 4.84
95 96 7.724305 TTTAGTGTAAGAGAAAATTGAGCGT 57.276 32.000 0.00 0.00 0.00 5.07
96 97 8.443160 TCATTTAGTGTAAGAGAAAATTGAGCG 58.557 33.333 0.00 0.00 0.00 5.03
124 125 9.822185 AAGAAAAATTGCTTCTAAAAGTGTGAT 57.178 25.926 4.03 0.00 32.77 3.06
125 126 9.086336 CAAGAAAAATTGCTTCTAAAAGTGTGA 57.914 29.630 4.03 0.00 32.77 3.58
140 141 5.293079 TCGGTGAAAAAGGCAAGAAAAATTG 59.707 36.000 0.00 0.00 0.00 2.32
141 142 5.423886 TCGGTGAAAAAGGCAAGAAAAATT 58.576 33.333 0.00 0.00 0.00 1.82
142 143 5.017294 TCGGTGAAAAAGGCAAGAAAAAT 57.983 34.783 0.00 0.00 0.00 1.82
143 144 4.457834 TCGGTGAAAAAGGCAAGAAAAA 57.542 36.364 0.00 0.00 0.00 1.94
144 145 4.664150 ATCGGTGAAAAAGGCAAGAAAA 57.336 36.364 0.00 0.00 0.00 2.29
145 146 5.067936 TGTTATCGGTGAAAAAGGCAAGAAA 59.932 36.000 0.00 0.00 0.00 2.52
146 147 4.580995 TGTTATCGGTGAAAAAGGCAAGAA 59.419 37.500 0.00 0.00 0.00 2.52
147 148 4.138290 TGTTATCGGTGAAAAAGGCAAGA 58.862 39.130 0.00 0.00 0.00 3.02
148 149 4.497473 TGTTATCGGTGAAAAAGGCAAG 57.503 40.909 0.00 0.00 0.00 4.01
149 150 4.339814 AGTTGTTATCGGTGAAAAAGGCAA 59.660 37.500 0.00 0.00 0.00 4.52
150 151 3.886505 AGTTGTTATCGGTGAAAAAGGCA 59.113 39.130 0.00 0.00 0.00 4.75
151 152 4.499037 AGTTGTTATCGGTGAAAAAGGC 57.501 40.909 0.00 0.00 0.00 4.35
152 153 7.198306 AGTAAGTTGTTATCGGTGAAAAAGG 57.802 36.000 0.00 0.00 0.00 3.11
153 154 8.339714 TCAAGTAAGTTGTTATCGGTGAAAAAG 58.660 33.333 0.00 0.00 37.43 2.27
154 155 8.211116 TCAAGTAAGTTGTTATCGGTGAAAAA 57.789 30.769 0.00 0.00 37.43 1.94
155 156 7.041644 CCTCAAGTAAGTTGTTATCGGTGAAAA 60.042 37.037 0.00 0.00 37.43 2.29
156 157 6.425721 CCTCAAGTAAGTTGTTATCGGTGAAA 59.574 38.462 0.00 0.00 37.43 2.69
157 158 5.929992 CCTCAAGTAAGTTGTTATCGGTGAA 59.070 40.000 0.00 0.00 37.43 3.18
158 159 5.475719 CCTCAAGTAAGTTGTTATCGGTGA 58.524 41.667 0.00 0.00 37.43 4.02
159 160 4.630069 CCCTCAAGTAAGTTGTTATCGGTG 59.370 45.833 0.00 0.00 37.43 4.94
160 161 4.529377 TCCCTCAAGTAAGTTGTTATCGGT 59.471 41.667 0.00 0.00 37.43 4.69
161 162 5.080969 TCCCTCAAGTAAGTTGTTATCGG 57.919 43.478 0.00 0.00 37.43 4.18
162 163 6.574350 AGATCCCTCAAGTAAGTTGTTATCG 58.426 40.000 0.00 0.00 37.43 2.92
163 164 7.201652 GCAAGATCCCTCAAGTAAGTTGTTATC 60.202 40.741 0.00 0.00 37.43 1.75
164 165 6.599638 GCAAGATCCCTCAAGTAAGTTGTTAT 59.400 38.462 0.00 0.00 37.43 1.89
165 166 5.938125 GCAAGATCCCTCAAGTAAGTTGTTA 59.062 40.000 0.00 0.00 37.43 2.41
166 167 4.762251 GCAAGATCCCTCAAGTAAGTTGTT 59.238 41.667 0.00 0.00 37.43 2.83
167 168 4.042187 AGCAAGATCCCTCAAGTAAGTTGT 59.958 41.667 0.00 0.00 37.43 3.32
168 169 4.583871 AGCAAGATCCCTCAAGTAAGTTG 58.416 43.478 0.00 0.00 37.52 3.16
169 170 4.287067 TGAGCAAGATCCCTCAAGTAAGTT 59.713 41.667 6.01 0.00 35.32 2.66
170 171 3.840666 TGAGCAAGATCCCTCAAGTAAGT 59.159 43.478 6.01 0.00 35.32 2.24
171 172 4.478206 TGAGCAAGATCCCTCAAGTAAG 57.522 45.455 6.01 0.00 35.32 2.34
172 173 4.908601 TTGAGCAAGATCCCTCAAGTAA 57.091 40.909 13.85 0.00 41.65 2.24
181 182 2.708325 ACCTAGGGATTGAGCAAGATCC 59.292 50.000 14.81 4.23 40.90 3.36
182 183 4.020662 CCTACCTAGGGATTGAGCAAGATC 60.021 50.000 14.81 0.00 39.86 2.75
183 184 3.906846 CCTACCTAGGGATTGAGCAAGAT 59.093 47.826 14.81 0.00 39.86 2.40
184 185 3.309296 CCTACCTAGGGATTGAGCAAGA 58.691 50.000 14.81 0.00 39.86 3.02
185 186 3.760580 CCTACCTAGGGATTGAGCAAG 57.239 52.381 14.81 0.00 39.86 4.01
186 187 4.593206 CATACCTACCTAGGGATTGAGCAA 59.407 45.833 14.81 0.00 44.83 3.91
187 188 4.140782 TCATACCTACCTAGGGATTGAGCA 60.141 45.833 14.81 0.00 44.83 4.26
188 189 4.417437 TCATACCTACCTAGGGATTGAGC 58.583 47.826 14.81 0.00 44.83 4.26
189 190 5.423610 CCATCATACCTACCTAGGGATTGAG 59.576 48.000 14.81 2.01 44.83 3.02
190 191 5.077300 TCCATCATACCTACCTAGGGATTGA 59.923 44.000 14.81 6.16 44.83 2.57
191 192 5.187967 GTCCATCATACCTACCTAGGGATTG 59.812 48.000 14.81 0.96 44.83 2.67
192 193 5.162760 TGTCCATCATACCTACCTAGGGATT 60.163 44.000 14.81 0.00 44.83 3.01
197 198 5.833667 TCAAGTGTCCATCATACCTACCTAG 59.166 44.000 0.00 0.00 0.00 3.02
198 199 5.773091 TCAAGTGTCCATCATACCTACCTA 58.227 41.667 0.00 0.00 0.00 3.08
199 200 4.620723 TCAAGTGTCCATCATACCTACCT 58.379 43.478 0.00 0.00 0.00 3.08
200 201 5.353394 TTCAAGTGTCCATCATACCTACC 57.647 43.478 0.00 0.00 0.00 3.18
201 202 7.865706 ATTTTCAAGTGTCCATCATACCTAC 57.134 36.000 0.00 0.00 0.00 3.18
202 203 9.613428 CTTATTTTCAAGTGTCCATCATACCTA 57.387 33.333 0.00 0.00 0.00 3.08
203 204 8.328758 TCTTATTTTCAAGTGTCCATCATACCT 58.671 33.333 0.00 0.00 0.00 3.08
204 205 8.506168 TCTTATTTTCAAGTGTCCATCATACC 57.494 34.615 0.00 0.00 0.00 2.73
207 208 9.865321 CAAATCTTATTTTCAAGTGTCCATCAT 57.135 29.630 0.00 0.00 0.00 2.45
208 209 8.306038 CCAAATCTTATTTTCAAGTGTCCATCA 58.694 33.333 0.00 0.00 0.00 3.07
209 210 8.522830 TCCAAATCTTATTTTCAAGTGTCCATC 58.477 33.333 0.00 0.00 0.00 3.51
210 211 8.421249 TCCAAATCTTATTTTCAAGTGTCCAT 57.579 30.769 0.00 0.00 0.00 3.41
211 212 7.831691 TCCAAATCTTATTTTCAAGTGTCCA 57.168 32.000 0.00 0.00 0.00 4.02
212 213 9.710900 AAATCCAAATCTTATTTTCAAGTGTCC 57.289 29.630 0.00 0.00 0.00 4.02
227 228 9.933723 CATCCAAAAACTCTTAAATCCAAATCT 57.066 29.630 0.00 0.00 0.00 2.40
228 229 8.659491 GCATCCAAAAACTCTTAAATCCAAATC 58.341 33.333 0.00 0.00 0.00 2.17
229 230 8.156165 TGCATCCAAAAACTCTTAAATCCAAAT 58.844 29.630 0.00 0.00 0.00 2.32
230 231 7.440856 GTGCATCCAAAAACTCTTAAATCCAAA 59.559 33.333 0.00 0.00 0.00 3.28
231 232 6.928492 GTGCATCCAAAAACTCTTAAATCCAA 59.072 34.615 0.00 0.00 0.00 3.53
232 233 6.041409 TGTGCATCCAAAAACTCTTAAATCCA 59.959 34.615 0.00 0.00 0.00 3.41
233 234 6.454795 TGTGCATCCAAAAACTCTTAAATCC 58.545 36.000 0.00 0.00 0.00 3.01
234 235 7.653311 ACTTGTGCATCCAAAAACTCTTAAATC 59.347 33.333 0.00 0.00 0.00 2.17
235 236 7.500141 ACTTGTGCATCCAAAAACTCTTAAAT 58.500 30.769 0.00 0.00 0.00 1.40
236 237 6.872920 ACTTGTGCATCCAAAAACTCTTAAA 58.127 32.000 0.00 0.00 0.00 1.52
237 238 6.463995 ACTTGTGCATCCAAAAACTCTTAA 57.536 33.333 0.00 0.00 0.00 1.85
238 239 6.770785 ACTACTTGTGCATCCAAAAACTCTTA 59.229 34.615 0.00 0.00 0.00 2.10
239 240 5.594317 ACTACTTGTGCATCCAAAAACTCTT 59.406 36.000 0.00 0.00 0.00 2.85
240 241 5.133221 ACTACTTGTGCATCCAAAAACTCT 58.867 37.500 0.00 0.00 0.00 3.24
241 242 5.438761 ACTACTTGTGCATCCAAAAACTC 57.561 39.130 0.00 0.00 0.00 3.01
242 243 6.942576 AGATACTACTTGTGCATCCAAAAACT 59.057 34.615 0.00 0.00 0.00 2.66
243 244 7.119846 AGAGATACTACTTGTGCATCCAAAAAC 59.880 37.037 0.00 0.00 0.00 2.43
244 245 7.168219 AGAGATACTACTTGTGCATCCAAAAA 58.832 34.615 0.00 0.00 0.00 1.94
245 246 6.711277 AGAGATACTACTTGTGCATCCAAAA 58.289 36.000 0.00 0.00 0.00 2.44
246 247 6.299805 AGAGATACTACTTGTGCATCCAAA 57.700 37.500 0.00 0.00 0.00 3.28
247 248 5.939764 AGAGATACTACTTGTGCATCCAA 57.060 39.130 0.00 0.00 0.00 3.53
248 249 6.392625 GTAGAGATACTACTTGTGCATCCA 57.607 41.667 0.00 0.00 45.56 3.41
260 261 8.461249 AAATTCCGCACTAAGTAGAGATACTA 57.539 34.615 0.00 0.00 0.00 1.82
261 262 6.963083 AATTCCGCACTAAGTAGAGATACT 57.037 37.500 0.00 0.00 0.00 2.12
262 263 8.328864 CAAAAATTCCGCACTAAGTAGAGATAC 58.671 37.037 0.00 0.00 0.00 2.24
263 264 7.494625 CCAAAAATTCCGCACTAAGTAGAGATA 59.505 37.037 0.00 0.00 0.00 1.98
264 265 6.316390 CCAAAAATTCCGCACTAAGTAGAGAT 59.684 38.462 0.00 0.00 0.00 2.75
265 266 5.642063 CCAAAAATTCCGCACTAAGTAGAGA 59.358 40.000 0.00 0.00 0.00 3.10
266 267 5.411669 ACCAAAAATTCCGCACTAAGTAGAG 59.588 40.000 0.00 0.00 0.00 2.43
267 268 5.310451 ACCAAAAATTCCGCACTAAGTAGA 58.690 37.500 0.00 0.00 0.00 2.59
268 269 5.180492 TGACCAAAAATTCCGCACTAAGTAG 59.820 40.000 0.00 0.00 0.00 2.57
269 270 5.064558 TGACCAAAAATTCCGCACTAAGTA 58.935 37.500 0.00 0.00 0.00 2.24
270 271 3.886505 TGACCAAAAATTCCGCACTAAGT 59.113 39.130 0.00 0.00 0.00 2.24
271 272 4.475944 CTGACCAAAAATTCCGCACTAAG 58.524 43.478 0.00 0.00 0.00 2.18
272 273 3.305064 GCTGACCAAAAATTCCGCACTAA 60.305 43.478 0.00 0.00 0.00 2.24
273 274 2.227865 GCTGACCAAAAATTCCGCACTA 59.772 45.455 0.00 0.00 0.00 2.74
274 275 1.000274 GCTGACCAAAAATTCCGCACT 60.000 47.619 0.00 0.00 0.00 4.40
275 276 1.269517 TGCTGACCAAAAATTCCGCAC 60.270 47.619 0.00 0.00 28.31 5.34
276 277 1.035923 TGCTGACCAAAAATTCCGCA 58.964 45.000 0.00 0.00 30.53 5.69
277 278 2.147436 TTGCTGACCAAAAATTCCGC 57.853 45.000 0.00 0.00 0.00 5.54
278 279 3.976169 TCTTTGCTGACCAAAAATTCCG 58.024 40.909 0.00 0.00 42.51 4.30
279 280 6.101997 CCTATCTTTGCTGACCAAAAATTCC 58.898 40.000 0.00 0.00 42.51 3.01
280 281 6.101997 CCCTATCTTTGCTGACCAAAAATTC 58.898 40.000 0.00 0.00 42.51 2.17
281 282 5.046376 CCCCTATCTTTGCTGACCAAAAATT 60.046 40.000 0.00 0.00 42.51 1.82
282 283 4.467438 CCCCTATCTTTGCTGACCAAAAAT 59.533 41.667 0.00 0.00 42.51 1.82
283 284 3.831911 CCCCTATCTTTGCTGACCAAAAA 59.168 43.478 0.00 0.00 42.51 1.94
284 285 3.430453 CCCCTATCTTTGCTGACCAAAA 58.570 45.455 0.00 0.00 42.51 2.44
285 286 2.291540 CCCCCTATCTTTGCTGACCAAA 60.292 50.000 0.00 0.00 40.97 3.28
286 287 1.284785 CCCCCTATCTTTGCTGACCAA 59.715 52.381 0.00 0.00 0.00 3.67
287 288 0.918983 CCCCCTATCTTTGCTGACCA 59.081 55.000 0.00 0.00 0.00 4.02
288 289 0.466372 GCCCCCTATCTTTGCTGACC 60.466 60.000 0.00 0.00 0.00 4.02
289 290 0.255890 TGCCCCCTATCTTTGCTGAC 59.744 55.000 0.00 0.00 0.00 3.51
290 291 0.998928 TTGCCCCCTATCTTTGCTGA 59.001 50.000 0.00 0.00 0.00 4.26
291 292 1.396653 CTTGCCCCCTATCTTTGCTG 58.603 55.000 0.00 0.00 0.00 4.41
292 293 0.396278 GCTTGCCCCCTATCTTTGCT 60.396 55.000 0.00 0.00 0.00 3.91
293 294 0.684153 TGCTTGCCCCCTATCTTTGC 60.684 55.000 0.00 0.00 0.00 3.68
294 295 1.106285 GTGCTTGCCCCCTATCTTTG 58.894 55.000 0.00 0.00 0.00 2.77
295 296 1.002857 AGTGCTTGCCCCCTATCTTT 58.997 50.000 0.00 0.00 0.00 2.52
296 297 1.490910 GTAGTGCTTGCCCCCTATCTT 59.509 52.381 0.00 0.00 0.00 2.40
297 298 1.132500 GTAGTGCTTGCCCCCTATCT 58.868 55.000 0.00 0.00 0.00 1.98
298 299 0.837272 TGTAGTGCTTGCCCCCTATC 59.163 55.000 0.00 0.00 0.00 2.08
299 300 1.143684 CATGTAGTGCTTGCCCCCTAT 59.856 52.381 0.00 0.00 0.00 2.57
300 301 0.546122 CATGTAGTGCTTGCCCCCTA 59.454 55.000 0.00 0.00 0.00 3.53
301 302 1.304282 CATGTAGTGCTTGCCCCCT 59.696 57.895 0.00 0.00 0.00 4.79
302 303 0.611896 AACATGTAGTGCTTGCCCCC 60.612 55.000 0.00 0.00 0.00 5.40
303 304 0.527565 CAACATGTAGTGCTTGCCCC 59.472 55.000 0.00 0.00 0.00 5.80
304 305 1.533625 TCAACATGTAGTGCTTGCCC 58.466 50.000 0.00 0.00 0.00 5.36
305 306 2.095059 CCTTCAACATGTAGTGCTTGCC 60.095 50.000 0.00 0.00 0.00 4.52
306 307 2.813754 TCCTTCAACATGTAGTGCTTGC 59.186 45.455 0.00 0.00 0.00 4.01
307 308 4.095483 GGATCCTTCAACATGTAGTGCTTG 59.905 45.833 3.84 0.00 0.00 4.01
308 309 4.263462 TGGATCCTTCAACATGTAGTGCTT 60.263 41.667 14.23 0.00 0.00 3.91
309 310 3.264193 TGGATCCTTCAACATGTAGTGCT 59.736 43.478 14.23 0.00 0.00 4.40
310 311 3.609853 TGGATCCTTCAACATGTAGTGC 58.390 45.455 14.23 0.00 0.00 4.40
311 312 5.295292 GTCATGGATCCTTCAACATGTAGTG 59.705 44.000 14.23 0.00 41.01 2.74
312 313 5.045651 TGTCATGGATCCTTCAACATGTAGT 60.046 40.000 14.23 0.00 41.01 2.73
313 314 5.430886 TGTCATGGATCCTTCAACATGTAG 58.569 41.667 14.23 0.00 41.01 2.74
314 315 5.434182 TGTCATGGATCCTTCAACATGTA 57.566 39.130 14.23 0.00 41.01 2.29
315 316 4.305539 TGTCATGGATCCTTCAACATGT 57.694 40.909 14.23 0.00 41.01 3.21
316 317 5.847111 ATTGTCATGGATCCTTCAACATG 57.153 39.130 14.23 7.22 41.44 3.21
317 318 7.230108 GTCATATTGTCATGGATCCTTCAACAT 59.770 37.037 14.23 5.23 0.00 2.71
318 319 6.543465 GTCATATTGTCATGGATCCTTCAACA 59.457 38.462 14.23 10.33 0.00 3.33
319 320 6.769822 AGTCATATTGTCATGGATCCTTCAAC 59.230 38.462 14.23 7.88 0.00 3.18
320 321 6.903516 AGTCATATTGTCATGGATCCTTCAA 58.096 36.000 14.23 12.51 0.00 2.69
321 322 6.505048 AGTCATATTGTCATGGATCCTTCA 57.495 37.500 14.23 4.12 0.00 3.02
322 323 7.222872 AGAAGTCATATTGTCATGGATCCTTC 58.777 38.462 14.23 3.01 0.00 3.46
323 324 7.146715 AGAAGTCATATTGTCATGGATCCTT 57.853 36.000 14.23 3.29 0.00 3.36
324 325 6.760440 AGAAGTCATATTGTCATGGATCCT 57.240 37.500 14.23 0.00 0.00 3.24
325 326 8.099537 ACATAGAAGTCATATTGTCATGGATCC 58.900 37.037 4.20 4.20 0.00 3.36
326 327 8.933807 CACATAGAAGTCATATTGTCATGGATC 58.066 37.037 0.00 0.00 0.00 3.36
327 328 8.654094 TCACATAGAAGTCATATTGTCATGGAT 58.346 33.333 0.00 0.00 0.00 3.41
328 329 8.021898 TCACATAGAAGTCATATTGTCATGGA 57.978 34.615 0.00 0.00 0.00 3.41
329 330 8.667076 TTCACATAGAAGTCATATTGTCATGG 57.333 34.615 0.00 0.00 0.00 3.66
357 358 9.522804 GACAACTTGATGGTTTATGTTTGTTTA 57.477 29.630 0.00 0.00 0.00 2.01
358 359 8.257306 AGACAACTTGATGGTTTATGTTTGTTT 58.743 29.630 0.00 0.00 0.00 2.83
359 360 7.781056 AGACAACTTGATGGTTTATGTTTGTT 58.219 30.769 0.00 0.00 0.00 2.83
360 361 7.346751 AGACAACTTGATGGTTTATGTTTGT 57.653 32.000 0.00 0.00 0.00 2.83
361 362 7.382218 GGAAGACAACTTGATGGTTTATGTTTG 59.618 37.037 0.00 0.00 36.39 2.93
362 363 7.287696 AGGAAGACAACTTGATGGTTTATGTTT 59.712 33.333 0.00 0.00 36.39 2.83
363 364 6.777580 AGGAAGACAACTTGATGGTTTATGTT 59.222 34.615 0.00 0.00 36.39 2.71
364 365 6.306987 AGGAAGACAACTTGATGGTTTATGT 58.693 36.000 0.00 0.00 36.39 2.29
365 366 6.824305 AGGAAGACAACTTGATGGTTTATG 57.176 37.500 0.00 0.00 36.39 1.90
366 367 6.777580 ACAAGGAAGACAACTTGATGGTTTAT 59.222 34.615 10.95 0.00 45.22 1.40
367 368 6.126409 ACAAGGAAGACAACTTGATGGTTTA 58.874 36.000 10.95 0.00 45.22 2.01
368 369 4.956075 ACAAGGAAGACAACTTGATGGTTT 59.044 37.500 10.95 0.00 45.22 3.27
369 370 4.536765 ACAAGGAAGACAACTTGATGGTT 58.463 39.130 10.95 0.00 45.22 3.67
370 371 4.137543 GACAAGGAAGACAACTTGATGGT 58.862 43.478 10.95 0.00 45.22 3.55
371 372 3.503748 GGACAAGGAAGACAACTTGATGG 59.496 47.826 10.95 0.00 45.22 3.51
372 373 4.136796 TGGACAAGGAAGACAACTTGATG 58.863 43.478 10.95 0.00 45.22 3.07
373 374 4.437682 TGGACAAGGAAGACAACTTGAT 57.562 40.909 10.95 0.00 45.22 2.57
374 375 3.924114 TGGACAAGGAAGACAACTTGA 57.076 42.857 10.95 0.00 45.22 3.02
376 377 2.943033 CGTTGGACAAGGAAGACAACTT 59.057 45.455 0.00 0.00 39.27 2.66
377 378 2.093128 ACGTTGGACAAGGAAGACAACT 60.093 45.455 11.23 0.00 39.27 3.16
378 379 2.285977 ACGTTGGACAAGGAAGACAAC 58.714 47.619 11.23 0.00 38.36 3.32
379 380 2.093394 TGACGTTGGACAAGGAAGACAA 60.093 45.455 11.23 0.00 0.00 3.18
380 381 1.483004 TGACGTTGGACAAGGAAGACA 59.517 47.619 11.23 4.07 0.00 3.41
381 382 2.234300 TGACGTTGGACAAGGAAGAC 57.766 50.000 11.23 1.98 0.00 3.01
382 383 2.093394 TGTTGACGTTGGACAAGGAAGA 60.093 45.455 11.23 0.00 0.00 2.87
383 384 2.285083 TGTTGACGTTGGACAAGGAAG 58.715 47.619 11.23 0.00 0.00 3.46
384 385 2.404923 TGTTGACGTTGGACAAGGAA 57.595 45.000 11.23 0.00 0.00 3.36
385 386 2.404923 TTGTTGACGTTGGACAAGGA 57.595 45.000 11.23 0.00 0.00 3.36
386 387 3.708563 AATTGTTGACGTTGGACAAGG 57.291 42.857 14.60 3.45 36.80 3.61
387 388 4.267452 CCAAAATTGTTGACGTTGGACAAG 59.733 41.667 14.60 4.90 41.05 3.16
388 389 4.177026 CCAAAATTGTTGACGTTGGACAA 58.823 39.130 12.57 12.57 41.05 3.18
389 390 3.775202 CCAAAATTGTTGACGTTGGACA 58.225 40.909 0.00 0.00 41.05 4.02
390 391 2.538037 GCCAAAATTGTTGACGTTGGAC 59.462 45.455 6.94 0.00 41.05 4.02
391 392 2.166459 TGCCAAAATTGTTGACGTTGGA 59.834 40.909 6.94 0.00 41.05 3.53
392 393 2.544685 TGCCAAAATTGTTGACGTTGG 58.455 42.857 0.00 0.00 41.41 3.77
393 394 7.573916 TTATATGCCAAAATTGTTGACGTTG 57.426 32.000 0.00 0.00 0.00 4.10
406 407 8.313292 GCCCTCATCAAAATATTATATGCCAAA 58.687 33.333 0.00 0.00 0.00 3.28
407 408 7.675195 AGCCCTCATCAAAATATTATATGCCAA 59.325 33.333 0.00 0.00 0.00 4.52
408 409 7.184161 AGCCCTCATCAAAATATTATATGCCA 58.816 34.615 0.00 0.00 0.00 4.92
409 410 7.651027 AGCCCTCATCAAAATATTATATGCC 57.349 36.000 0.00 0.00 0.00 4.40
415 416 9.639563 TGATTGTAAGCCCTCATCAAAATATTA 57.360 29.630 0.00 0.00 0.00 0.98
416 417 8.416329 GTGATTGTAAGCCCTCATCAAAATATT 58.584 33.333 0.00 0.00 0.00 1.28
417 418 7.560991 TGTGATTGTAAGCCCTCATCAAAATAT 59.439 33.333 0.00 0.00 0.00 1.28
418 419 6.889177 TGTGATTGTAAGCCCTCATCAAAATA 59.111 34.615 0.00 0.00 0.00 1.40
419 420 5.716228 TGTGATTGTAAGCCCTCATCAAAAT 59.284 36.000 0.00 0.00 0.00 1.82
420 421 5.076182 TGTGATTGTAAGCCCTCATCAAAA 58.924 37.500 0.00 0.00 0.00 2.44
421 422 4.661222 TGTGATTGTAAGCCCTCATCAAA 58.339 39.130 0.00 0.00 0.00 2.69
422 423 4.299586 TGTGATTGTAAGCCCTCATCAA 57.700 40.909 0.00 0.00 0.00 2.57
423 424 3.998913 TGTGATTGTAAGCCCTCATCA 57.001 42.857 0.00 0.00 0.00 3.07
424 425 5.415701 TCTTTTGTGATTGTAAGCCCTCATC 59.584 40.000 0.00 0.00 0.00 2.92
425 426 5.324409 TCTTTTGTGATTGTAAGCCCTCAT 58.676 37.500 0.00 0.00 0.00 2.90
426 427 4.724399 TCTTTTGTGATTGTAAGCCCTCA 58.276 39.130 0.00 0.00 0.00 3.86
427 428 5.904362 ATCTTTTGTGATTGTAAGCCCTC 57.096 39.130 0.00 0.00 0.00 4.30
428 429 6.494835 AGAAATCTTTTGTGATTGTAAGCCCT 59.505 34.615 0.00 0.00 36.84 5.19
429 430 6.691508 AGAAATCTTTTGTGATTGTAAGCCC 58.308 36.000 0.00 0.00 36.84 5.19
430 431 7.970614 CCTAGAAATCTTTTGTGATTGTAAGCC 59.029 37.037 0.00 0.00 36.84 4.35
431 432 8.730680 TCCTAGAAATCTTTTGTGATTGTAAGC 58.269 33.333 0.00 0.00 36.84 3.09
435 436 9.965902 ACTATCCTAGAAATCTTTTGTGATTGT 57.034 29.630 0.00 0.00 36.84 2.71
464 465 9.347240 CTTGGTTGAGAGGATTCACATATAAAT 57.653 33.333 0.00 0.00 0.00 1.40
465 466 8.328758 ACTTGGTTGAGAGGATTCACATATAAA 58.671 33.333 0.00 0.00 0.00 1.40
466 467 7.861629 ACTTGGTTGAGAGGATTCACATATAA 58.138 34.615 0.00 0.00 0.00 0.98
467 468 7.437713 ACTTGGTTGAGAGGATTCACATATA 57.562 36.000 0.00 0.00 0.00 0.86
468 469 6.319048 ACTTGGTTGAGAGGATTCACATAT 57.681 37.500 0.00 0.00 0.00 1.78
469 470 5.762179 ACTTGGTTGAGAGGATTCACATA 57.238 39.130 0.00 0.00 0.00 2.29
470 471 4.647564 ACTTGGTTGAGAGGATTCACAT 57.352 40.909 0.00 0.00 0.00 3.21
471 472 4.437682 AACTTGGTTGAGAGGATTCACA 57.562 40.909 0.00 0.00 0.00 3.58
472 473 4.580580 ACAAACTTGGTTGAGAGGATTCAC 59.419 41.667 5.33 0.00 32.59 3.18
473 474 4.792068 ACAAACTTGGTTGAGAGGATTCA 58.208 39.130 5.33 0.00 32.59 2.57
474 475 4.083802 CGACAAACTTGGTTGAGAGGATTC 60.084 45.833 5.33 0.00 32.59 2.52
475 476 3.815401 CGACAAACTTGGTTGAGAGGATT 59.185 43.478 5.33 0.00 32.59 3.01
476 477 3.181454 ACGACAAACTTGGTTGAGAGGAT 60.181 43.478 5.33 0.00 32.59 3.24
477 478 2.169769 ACGACAAACTTGGTTGAGAGGA 59.830 45.455 5.33 0.00 32.59 3.71
478 479 2.544267 GACGACAAACTTGGTTGAGAGG 59.456 50.000 5.33 0.00 32.59 3.69
479 480 3.194861 TGACGACAAACTTGGTTGAGAG 58.805 45.455 5.33 0.00 32.59 3.20
480 481 3.254470 TGACGACAAACTTGGTTGAGA 57.746 42.857 5.33 0.00 32.59 3.27
481 482 4.552166 ATTGACGACAAACTTGGTTGAG 57.448 40.909 4.09 1.89 39.54 3.02
482 483 5.120399 AGTATTGACGACAAACTTGGTTGA 58.880 37.500 4.09 0.00 39.54 3.18
483 484 5.418310 AGTATTGACGACAAACTTGGTTG 57.582 39.130 4.09 0.00 39.54 3.77
484 485 5.587043 TGAAGTATTGACGACAAACTTGGTT 59.413 36.000 21.90 7.95 39.54 3.67
485 486 5.120399 TGAAGTATTGACGACAAACTTGGT 58.880 37.500 21.90 8.19 39.54 3.67
486 487 5.666969 TGAAGTATTGACGACAAACTTGG 57.333 39.130 21.90 0.00 39.54 3.61
487 488 7.044314 GGTTTTGAAGTATTGACGACAAACTTG 60.044 37.037 21.90 0.00 39.54 3.16
488 489 6.970613 GGTTTTGAAGTATTGACGACAAACTT 59.029 34.615 19.21 19.21 39.54 2.66
489 490 6.094325 TGGTTTTGAAGTATTGACGACAAACT 59.906 34.615 4.09 6.96 39.54 2.66
490 491 6.259638 TGGTTTTGAAGTATTGACGACAAAC 58.740 36.000 4.09 4.89 39.54 2.93
491 492 6.438259 TGGTTTTGAAGTATTGACGACAAA 57.562 33.333 4.09 0.00 39.54 2.83
492 493 6.438259 TTGGTTTTGAAGTATTGACGACAA 57.562 33.333 2.18 2.18 40.42 3.18
493 494 6.627395 ATTGGTTTTGAAGTATTGACGACA 57.373 33.333 0.00 0.00 0.00 4.35
494 495 7.749126 CCTAATTGGTTTTGAAGTATTGACGAC 59.251 37.037 0.00 0.00 0.00 4.34
495 496 7.094549 CCCTAATTGGTTTTGAAGTATTGACGA 60.095 37.037 0.00 0.00 0.00 4.20
496 497 7.027161 CCCTAATTGGTTTTGAAGTATTGACG 58.973 38.462 0.00 0.00 0.00 4.35
497 498 7.177744 TCCCCTAATTGGTTTTGAAGTATTGAC 59.822 37.037 0.00 0.00 0.00 3.18
498 499 7.242359 TCCCCTAATTGGTTTTGAAGTATTGA 58.758 34.615 0.00 0.00 0.00 2.57
499 500 7.363793 CCTCCCCTAATTGGTTTTGAAGTATTG 60.364 40.741 0.00 0.00 0.00 1.90
500 501 6.667848 CCTCCCCTAATTGGTTTTGAAGTATT 59.332 38.462 0.00 0.00 0.00 1.89
501 502 6.194967 CCTCCCCTAATTGGTTTTGAAGTAT 58.805 40.000 0.00 0.00 0.00 2.12
502 503 5.576128 CCTCCCCTAATTGGTTTTGAAGTA 58.424 41.667 0.00 0.00 0.00 2.24
503 504 4.416516 CCTCCCCTAATTGGTTTTGAAGT 58.583 43.478 0.00 0.00 0.00 3.01
504 505 3.195610 GCCTCCCCTAATTGGTTTTGAAG 59.804 47.826 0.00 0.00 0.00 3.02
505 506 3.169908 GCCTCCCCTAATTGGTTTTGAA 58.830 45.455 0.00 0.00 0.00 2.69
506 507 2.110899 TGCCTCCCCTAATTGGTTTTGA 59.889 45.455 0.00 0.00 0.00 2.69
507 508 2.233676 GTGCCTCCCCTAATTGGTTTTG 59.766 50.000 0.00 0.00 0.00 2.44
508 509 2.111792 AGTGCCTCCCCTAATTGGTTTT 59.888 45.455 0.00 0.00 0.00 2.43
509 510 1.716503 AGTGCCTCCCCTAATTGGTTT 59.283 47.619 0.00 0.00 0.00 3.27
510 511 1.382914 AGTGCCTCCCCTAATTGGTT 58.617 50.000 0.00 0.00 0.00 3.67
511 512 2.127708 CTAGTGCCTCCCCTAATTGGT 58.872 52.381 0.00 0.00 0.00 3.67
512 513 2.408565 TCTAGTGCCTCCCCTAATTGG 58.591 52.381 0.00 0.00 0.00 3.16
513 514 4.013267 CATCTAGTGCCTCCCCTAATTG 57.987 50.000 0.00 0.00 0.00 2.32
537 538 7.255569 TGATTGGTTGATACGTCTACTGTAAG 58.744 38.462 0.00 0.00 42.29 2.34
538 539 7.160547 TGATTGGTTGATACGTCTACTGTAA 57.839 36.000 0.00 0.00 31.86 2.41
539 540 6.762702 TGATTGGTTGATACGTCTACTGTA 57.237 37.500 0.00 0.00 31.86 2.74
540 541 5.654603 TGATTGGTTGATACGTCTACTGT 57.345 39.130 0.00 0.00 31.86 3.55
541 542 6.510157 GCATTGATTGGTTGATACGTCTACTG 60.510 42.308 0.00 0.00 31.86 2.74
542 543 5.523916 GCATTGATTGGTTGATACGTCTACT 59.476 40.000 0.00 0.00 31.86 2.57
562 563 2.028112 TCTTCAGTTCTAGTGGCGCATT 60.028 45.455 10.83 0.00 0.00 3.56
567 568 5.799827 ATAGGATCTTCAGTTCTAGTGGC 57.200 43.478 0.00 0.00 0.00 5.01
622 623 4.673968 AGGGAGTGTCATGTACAGAGTTA 58.326 43.478 0.33 0.00 39.29 2.24
636 637 8.164070 ACAAATATTTAGAAACAGAGGGAGTGT 58.836 33.333 0.00 0.00 0.00 3.55
717 718 7.148188 GGAGCAAAATGAGTGAATCTACATTCA 60.148 37.037 0.00 0.00 45.20 2.57
771 791 9.556030 CCCTTCGTTTCTAAATATTTGTCTTTC 57.444 33.333 11.05 0.00 0.00 2.62
772 792 9.292195 TCCCTTCGTTTCTAAATATTTGTCTTT 57.708 29.630 11.05 0.00 0.00 2.52
773 793 8.857694 TCCCTTCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
774 794 8.101419 ACTCCCTTCGTTTCTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
775 795 8.265165 ACTCCCTTCGTTTCTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
776 796 9.901172 ATACTCCCTTCGTTTCTAAATATTTGT 57.099 29.630 11.05 0.00 0.00 2.83
778 798 9.901172 ACATACTCCCTTCGTTTCTAAATATTT 57.099 29.630 5.89 5.89 0.00 1.40
779 799 9.901172 AACATACTCCCTTCGTTTCTAAATATT 57.099 29.630 0.00 0.00 0.00 1.28
871 892 3.557595 CCATCTTTGTTCGCTGGATAGAC 59.442 47.826 0.00 0.00 0.00 2.59
892 913 8.737168 TGACCATTAAATATATAGATGCAGCC 57.263 34.615 0.00 0.00 0.00 4.85
955 1542 1.823295 GCTGGCTCAGTTATCCGGA 59.177 57.895 6.61 6.61 33.43 5.14
1007 2635 2.975799 GCTGCCGAACCGACCAAA 60.976 61.111 0.00 0.00 0.00 3.28
1432 3836 3.966026 CTCCTTGGCGGTCGTCGTC 62.966 68.421 0.00 0.00 44.94 4.20
1572 3994 1.724582 GGAACCAATCGCCCATTCCG 61.725 60.000 0.00 0.00 30.17 4.30
1621 4046 4.218312 AGCAAAAGTTCATCTTCAGGGTT 58.782 39.130 0.00 0.00 35.02 4.11
1626 4051 6.309712 CTCTCAAGCAAAAGTTCATCTTCA 57.690 37.500 0.00 0.00 35.02 3.02
2026 4996 3.373565 CCAAGAAACGGCCAGGCC 61.374 66.667 22.33 22.33 46.75 5.19
2027 4997 2.142357 GAACCAAGAAACGGCCAGGC 62.142 60.000 1.26 1.26 0.00 4.85
2147 5120 8.887036 ATCAAAATTTTCACTTTCTGGTAACC 57.113 30.769 0.00 0.00 0.00 2.85
2157 5130 9.880157 CATATGAAGGGATCAAAATTTTCACTT 57.120 29.630 5.70 5.70 42.54 3.16
2209 5182 3.921677 AGGCAATGCTTTTCACAGATTG 58.078 40.909 4.82 0.00 0.00 2.67
3260 6475 6.479990 CCTTGAGCGTATTTCTCATCACATAA 59.520 38.462 0.00 0.00 39.96 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.