Multiple sequence alignment - TraesCS3D01G177100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G177100 chr3D 100.000 2788 0 0 1 2788 158459833 158457046 0.000000e+00 5149
1 TraesCS3D01G177100 chr3B 94.797 1230 34 15 747 1956 235920042 235918823 0.000000e+00 1890
2 TraesCS3D01G177100 chr3B 92.381 420 23 3 2093 2507 235918625 235918210 8.600000e-165 590
3 TraesCS3D01G177100 chr3B 91.071 224 15 5 106 326 235921286 235921065 5.840000e-77 298
4 TraesCS3D01G177100 chr3B 87.405 262 25 5 327 581 235921007 235920747 7.550000e-76 294
5 TraesCS3D01G177100 chr3B 88.430 121 12 2 1950 2068 235918798 235918678 8.050000e-31 145
6 TraesCS3D01G177100 chr3A 93.009 1316 36 22 673 1956 169226136 169227427 0.000000e+00 1869
7 TraesCS3D01G177100 chr3A 89.953 637 33 10 5 626 169224401 169225021 0.000000e+00 793
8 TraesCS3D01G177100 chr3A 85.742 512 37 13 1950 2429 169227452 169227959 2.480000e-140 508
9 TraesCS3D01G177100 chr3A 90.083 363 22 2 2427 2788 169228175 169228524 2.530000e-125 459


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G177100 chr3D 158457046 158459833 2787 True 5149.00 5149 100.00000 1 2788 1 chr3D.!!$R1 2787
1 TraesCS3D01G177100 chr3B 235918210 235921286 3076 True 643.40 1890 90.81680 106 2507 5 chr3B.!!$R1 2401
2 TraesCS3D01G177100 chr3A 169224401 169228524 4123 False 907.25 1869 89.69675 5 2788 4 chr3A.!!$F1 2783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 113 0.038618 TCACGACACCGACAAGATGG 60.039 55.0 0.0 0.0 39.50 3.51 F
315 331 0.527113 CCCATGTCGATGCAAGCAAA 59.473 50.0 0.0 0.0 0.00 3.68 F
1014 2304 0.116342 TCCACCTCCCACAGAGCTAA 59.884 55.0 0.0 0.0 41.74 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 2304 0.748450 TTTGCTTGCTTGCTGCTTCT 59.252 45.0 0.0 0.0 43.37 2.85 R
1518 2829 2.936498 CACTACCGAACCATCAACCATC 59.064 50.0 0.0 0.0 0.00 3.51 R
2680 4292 0.324943 TAGCAACAGGAACAGAGCCC 59.675 55.0 0.0 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.690219 GAGGGAGGATGATGGCACGT 61.690 60.000 0.00 0.00 0.00 4.49
42 46 4.521256 ACGTAGTTCTTCTCTCTTGAGCTT 59.479 41.667 0.00 0.00 37.78 3.74
45 49 5.743636 AGTTCTTCTCTCTTGAGCTTGAT 57.256 39.130 0.00 0.00 40.03 2.57
47 51 5.481473 AGTTCTTCTCTCTTGAGCTTGATCT 59.519 40.000 0.00 0.00 40.03 2.75
48 52 6.663093 AGTTCTTCTCTCTTGAGCTTGATCTA 59.337 38.462 0.00 0.00 40.03 1.98
82 86 2.892914 CACGGTTGGTGCGTGACA 60.893 61.111 0.00 0.00 40.33 3.58
100 104 0.784178 CACATCTTGTCACGACACCG 59.216 55.000 0.00 0.00 41.67 4.94
102 106 1.060713 CATCTTGTCACGACACCGAC 58.939 55.000 0.00 0.00 41.67 4.79
109 113 0.038618 TCACGACACCGACAAGATGG 60.039 55.000 0.00 0.00 39.50 3.51
123 128 3.521126 ACAAGATGGAGCCATACTTGAGT 59.479 43.478 28.41 16.05 40.16 3.41
303 319 3.192922 GTACGCGCACCCCATGTC 61.193 66.667 5.73 0.00 0.00 3.06
315 331 0.527113 CCCATGTCGATGCAAGCAAA 59.473 50.000 0.00 0.00 0.00 3.68
358 437 5.468072 CCAAGCACAAGGAGATACATACATC 59.532 44.000 0.00 0.00 0.00 3.06
399 479 3.639716 TTGATGCACTGATCGCAAAAA 57.360 38.095 0.00 0.00 43.84 1.94
400 480 3.853831 TGATGCACTGATCGCAAAAAT 57.146 38.095 0.00 0.00 43.84 1.82
401 481 4.961435 TGATGCACTGATCGCAAAAATA 57.039 36.364 0.00 0.00 43.84 1.40
403 483 5.893687 TGATGCACTGATCGCAAAAATATT 58.106 33.333 0.00 0.00 43.84 1.28
404 484 7.025485 TGATGCACTGATCGCAAAAATATTA 57.975 32.000 0.00 0.00 43.84 0.98
416 496 8.388319 TCGCAAAAATATTATTTTCAACGAGG 57.612 30.769 19.24 7.54 31.32 4.63
458 538 6.197282 CAGATCCGTATCGATCCATTAATTCG 59.803 42.308 0.00 2.29 39.67 3.34
467 547 5.878116 TCGATCCATTAATTCGAACCTTTGT 59.122 36.000 0.00 0.00 38.80 2.83
559 639 3.405170 ACGAAGAAAACAACAGTGCTG 57.595 42.857 0.00 0.00 0.00 4.41
595 691 6.603997 TCTTGTTTAGTTGTTTAGCAAAGGGA 59.396 34.615 0.00 0.00 39.03 4.20
626 722 6.653989 ACAGGAATGCTAAATTGCTAGTAGT 58.346 36.000 0.00 0.00 0.00 2.73
651 747 9.821662 GTAGCACGTTAACTTCTCATTTTATTT 57.178 29.630 3.71 0.00 0.00 1.40
665 761 7.277981 TCTCATTTTATTTTAGCGTCTCTGGTC 59.722 37.037 0.00 0.00 0.00 4.02
667 763 6.476243 TTTTATTTTAGCGTCTCTGGTCAC 57.524 37.500 0.00 0.00 0.00 3.67
669 765 2.724977 TTTAGCGTCTCTGGTCACAG 57.275 50.000 0.00 0.00 46.30 3.66
670 766 1.617322 TTAGCGTCTCTGGTCACAGT 58.383 50.000 0.00 0.00 45.14 3.55
671 767 2.484742 TAGCGTCTCTGGTCACAGTA 57.515 50.000 0.00 0.00 45.14 2.74
700 1873 4.840271 GTAGTGCTACTACCCCAAAACAT 58.160 43.478 12.68 0.00 43.96 2.71
702 1875 5.508280 AGTGCTACTACCCCAAAACATAA 57.492 39.130 0.00 0.00 0.00 1.90
703 1876 5.497474 AGTGCTACTACCCCAAAACATAAG 58.503 41.667 0.00 0.00 0.00 1.73
704 1877 4.095932 GTGCTACTACCCCAAAACATAAGC 59.904 45.833 0.00 0.00 0.00 3.09
705 1878 3.630769 GCTACTACCCCAAAACATAAGCC 59.369 47.826 0.00 0.00 0.00 4.35
708 1886 4.484912 ACTACCCCAAAACATAAGCCAAA 58.515 39.130 0.00 0.00 0.00 3.28
854 2144 0.534652 GGAGATCACAGGATGGCAGC 60.535 60.000 0.00 0.00 43.62 5.25
1014 2304 0.116342 TCCACCTCCCACAGAGCTAA 59.884 55.000 0.00 0.00 41.74 3.09
1082 2372 1.239968 GCAAGAGCACCAGTTCAGGG 61.240 60.000 0.00 0.00 41.58 4.45
1186 2476 1.067776 AGGAACATCAAGACGACGGAC 60.068 52.381 0.00 0.00 0.00 4.79
1661 2975 4.220572 GTCGTTAGGTCAATCTCTATCGC 58.779 47.826 0.00 0.00 32.15 4.58
1750 3065 0.319555 ATGTACGTGTCGCTTGTGCT 60.320 50.000 0.00 0.00 36.97 4.40
1757 3072 0.179070 TGTCGCTTGTGCTGTGGTAA 60.179 50.000 0.00 0.00 36.97 2.85
1759 3074 0.105964 TCGCTTGTGCTGTGGTAAGT 59.894 50.000 0.00 0.00 36.97 2.24
1760 3075 0.235665 CGCTTGTGCTGTGGTAAGTG 59.764 55.000 0.00 0.00 36.97 3.16
1778 3094 7.614974 TGGTAAGTGATGATGAAATGAATGGAA 59.385 33.333 0.00 0.00 0.00 3.53
1811 3130 9.563748 TGTAGTATAAGCTTTTGTTGGTTTACT 57.436 29.630 3.20 0.00 0.00 2.24
1862 3181 1.268539 GGTTGGAACAGCAAACTCACG 60.269 52.381 0.00 0.00 42.95 4.35
1950 3272 7.798071 TCTAGACAAGTTTTTCTTAAGTCCCA 58.202 34.615 1.63 0.00 32.74 4.37
1951 3273 8.437575 TCTAGACAAGTTTTTCTTAAGTCCCAT 58.562 33.333 1.63 0.00 32.74 4.00
1952 3274 7.511959 AGACAAGTTTTTCTTAAGTCCCATC 57.488 36.000 1.63 0.00 32.74 3.51
1955 3310 6.040504 ACAAGTTTTTCTTAAGTCCCATCACC 59.959 38.462 1.63 0.00 34.66 4.02
1980 3336 4.985538 ATCTTGAACGGTACTGGAGTAG 57.014 45.455 6.65 0.00 0.00 2.57
2068 3424 8.387813 ACAATTCCCAGTTAATTAACTACTCCA 58.612 33.333 26.38 12.74 44.19 3.86
2070 3426 9.990868 AATTCCCAGTTAATTAACTACTCCATT 57.009 29.630 26.38 17.95 44.19 3.16
2071 3427 8.801882 TTCCCAGTTAATTAACTACTCCATTG 57.198 34.615 26.38 14.40 44.19 2.82
2075 3457 7.282450 CCAGTTAATTAACTACTCCATTGGTCC 59.718 40.741 26.38 0.00 44.19 4.46
2085 3467 8.751215 ACTACTCCATTGGTCCCATAATATAA 57.249 34.615 1.86 0.00 0.00 0.98
2086 3468 9.177927 ACTACTCCATTGGTCCCATAATATAAA 57.822 33.333 1.86 0.00 0.00 1.40
2089 3471 9.533831 ACTCCATTGGTCCCATAATATAAAATC 57.466 33.333 1.86 0.00 0.00 2.17
2090 3472 8.574251 TCCATTGGTCCCATAATATAAAATCG 57.426 34.615 1.86 0.00 0.00 3.34
2091 3473 8.167392 TCCATTGGTCCCATAATATAAAATCGT 58.833 33.333 1.86 0.00 0.00 3.73
2111 3498 6.889301 TCGTTTATATTATGAGACGGAGGT 57.111 37.500 0.00 0.00 0.00 3.85
2122 3509 2.871633 GAGACGGAGGTAGTAGTACTGC 59.128 54.545 13.29 11.44 0.00 4.40
2145 3532 8.958119 TGCACTAGTATAAATTAAGACCAAGG 57.042 34.615 0.00 0.00 0.00 3.61
2173 3560 4.458989 GGATGAATAAAACACCACTGCTCA 59.541 41.667 0.00 0.00 0.00 4.26
2194 3581 7.024171 GCTCAGCAATAGTAAGAAGGAAAAAC 58.976 38.462 0.00 0.00 0.00 2.43
2322 3716 2.270205 CTGCAGGCTGTAGGGGTG 59.730 66.667 23.09 0.00 0.00 4.61
2323 3717 3.329889 TGCAGGCTGTAGGGGTGG 61.330 66.667 17.16 0.00 0.00 4.61
2417 3811 3.708890 TGTGTATCCAAACCGCTATACG 58.291 45.455 0.00 0.00 43.15 3.06
2443 4055 4.561606 CGATACTTGTTGTTCTACCTTCGG 59.438 45.833 0.00 0.00 0.00 4.30
2509 4121 5.523552 GGTGTGGATTTTCTTTTCCAACAAG 59.476 40.000 0.00 0.00 43.42 3.16
2514 4126 7.010460 GTGGATTTTCTTTTCCAACAAGAACAG 59.990 37.037 0.00 0.00 43.42 3.16
2626 4238 3.672295 CTCTGCCCAAGCGTCCTCC 62.672 68.421 0.00 0.00 44.31 4.30
2691 4303 2.361737 GCAAGGGGGCTCTGTTCC 60.362 66.667 0.00 0.00 0.00 3.62
2713 4325 2.488937 TGTTGCTATTCGACGAGGTGTA 59.511 45.455 0.00 0.00 31.43 2.90
2726 4338 2.414293 CGAGGTGTAGCGATGTATAGGC 60.414 54.545 0.00 0.00 0.00 3.93
2744 4356 1.636988 GCAATGGCTTTGATGCAGTC 58.363 50.000 16.43 0.00 37.53 3.51
2747 4359 2.154567 ATGGCTTTGATGCAGTCCAT 57.845 45.000 0.00 0.00 36.70 3.41
2753 4365 2.291209 TTGATGCAGTCCATGTGGTT 57.709 45.000 0.00 0.00 33.29 3.67
2760 4372 2.033801 GCAGTCCATGTGGTTATGATGC 59.966 50.000 0.00 0.00 36.34 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.769247 TGCCATCATCCTCCCTCATG 59.231 55.000 0.00 0.00 0.00 3.07
1 2 0.769873 GTGCCATCATCCTCCCTCAT 59.230 55.000 0.00 0.00 0.00 2.90
2 3 1.689243 CGTGCCATCATCCTCCCTCA 61.689 60.000 0.00 0.00 0.00 3.86
3 4 1.070445 CGTGCCATCATCCTCCCTC 59.930 63.158 0.00 0.00 0.00 4.30
10 11 3.786635 AGAAGAACTACGTGCCATCATC 58.213 45.455 0.00 0.00 0.00 2.92
22 23 6.663093 AGATCAAGCTCAAGAGAGAAGAACTA 59.337 38.462 0.32 0.00 44.98 2.24
45 49 0.244721 CGCCTCATGATCGCCATAGA 59.755 55.000 0.00 0.00 33.31 1.98
47 51 1.374631 GCGCCTCATGATCGCCATA 60.375 57.895 23.72 0.00 42.71 2.74
48 52 2.667536 GCGCCTCATGATCGCCAT 60.668 61.111 23.72 0.00 42.71 4.40
82 86 0.671796 TCGGTGTCGTGACAAGATGT 59.328 50.000 3.92 0.00 43.77 3.06
98 102 1.414181 AGTATGGCTCCATCTTGTCGG 59.586 52.381 4.41 0.00 37.82 4.79
100 104 4.125703 CTCAAGTATGGCTCCATCTTGTC 58.874 47.826 24.00 8.88 39.56 3.18
102 106 3.875727 CACTCAAGTATGGCTCCATCTTG 59.124 47.826 21.70 21.70 39.72 3.02
123 128 0.987294 CTTCTTCCTTCCTCCAGCCA 59.013 55.000 0.00 0.00 0.00 4.75
303 319 1.202110 CCAGTAGCTTTGCTTGCATCG 60.202 52.381 0.00 0.00 40.44 3.84
358 437 3.939740 TGGGAGAGGGAATGAAGAATG 57.060 47.619 0.00 0.00 0.00 2.67
399 479 6.389830 TGCATGCCTCGTTGAAAATAATAT 57.610 33.333 16.68 0.00 0.00 1.28
400 480 5.826601 TGCATGCCTCGTTGAAAATAATA 57.173 34.783 16.68 0.00 0.00 0.98
401 481 4.717233 TGCATGCCTCGTTGAAAATAAT 57.283 36.364 16.68 0.00 0.00 1.28
403 483 4.031418 CATGCATGCCTCGTTGAAAATA 57.969 40.909 14.93 0.00 0.00 1.40
404 484 2.883574 CATGCATGCCTCGTTGAAAAT 58.116 42.857 14.93 0.00 0.00 1.82
433 513 6.197282 CGAATTAATGGATCGATACGGATCTG 59.803 42.308 5.98 0.00 41.99 2.90
631 727 9.537848 ACGCTAAAATAAAATGAGAAGTTAACG 57.462 29.630 0.00 0.00 0.00 3.18
635 731 9.220767 AGAGACGCTAAAATAAAATGAGAAGTT 57.779 29.630 0.00 0.00 0.00 2.66
640 736 7.064609 TGACCAGAGACGCTAAAATAAAATGAG 59.935 37.037 0.00 0.00 0.00 2.90
651 747 1.617322 ACTGTGACCAGAGACGCTAA 58.383 50.000 0.95 0.00 41.50 3.09
708 1886 6.064060 TCAAGAGTGTTCAAAATCCAGTGAT 58.936 36.000 0.00 0.00 0.00 3.06
854 2144 3.263941 GGTACCTGCTGCGGTTTG 58.736 61.111 18.37 2.03 38.49 2.93
1014 2304 0.748450 TTTGCTTGCTTGCTGCTTCT 59.252 45.000 0.00 0.00 43.37 2.85
1082 2372 2.030262 CTCCATCGCTAGCCTGCC 59.970 66.667 9.66 0.00 0.00 4.85
1518 2829 2.936498 CACTACCGAACCATCAACCATC 59.064 50.000 0.00 0.00 0.00 3.51
1661 2975 3.800506 ACCAAGAACTTAACACGAACGAG 59.199 43.478 0.14 0.00 0.00 4.18
1750 3065 7.148035 CCATTCATTTCATCATCACTTACCACA 60.148 37.037 0.00 0.00 0.00 4.17
1791 3110 8.909923 ACAAGTAGTAAACCAACAAAAGCTTAT 58.090 29.630 0.00 0.00 0.00 1.73
1792 3111 8.283699 ACAAGTAGTAAACCAACAAAAGCTTA 57.716 30.769 0.00 0.00 0.00 3.09
1795 3114 8.914328 TTAACAAGTAGTAAACCAACAAAAGC 57.086 30.769 0.00 0.00 0.00 3.51
1809 3128 6.026513 GTCGAGCTCGTAATTAACAAGTAGT 58.973 40.000 33.33 0.00 40.80 2.73
1810 3129 6.256686 AGTCGAGCTCGTAATTAACAAGTAG 58.743 40.000 33.33 1.87 40.80 2.57
1811 3130 6.187125 AGTCGAGCTCGTAATTAACAAGTA 57.813 37.500 33.33 8.60 40.80 2.24
1862 3181 6.311723 CAATATACTCCGACCAAAACACAAC 58.688 40.000 0.00 0.00 0.00 3.32
1955 3310 4.036498 ACTCCAGTACCGTTCAAGATATCG 59.964 45.833 0.00 0.00 0.00 2.92
1987 3343 8.606040 AGACATCTCTTTCTTTTTCTCTTCAG 57.394 34.615 0.00 0.00 0.00 3.02
1993 3349 8.983724 CGTCTAAAGACATCTCTTTCTTTTTCT 58.016 33.333 10.55 0.00 42.14 2.52
2045 3401 9.408648 CAATGGAGTAGTTAATTAACTGGGAAT 57.591 33.333 31.97 17.25 45.44 3.01
2046 3402 7.832187 CCAATGGAGTAGTTAATTAACTGGGAA 59.168 37.037 31.97 15.56 45.44 3.97
2047 3403 7.037153 ACCAATGGAGTAGTTAATTAACTGGGA 60.037 37.037 31.97 15.87 45.44 4.37
2060 3416 8.751215 TTATATTATGGGACCAATGGAGTAGT 57.249 34.615 6.16 0.00 0.00 2.73
2085 3467 8.365647 ACCTCCGTCTCATAATATAAACGATTT 58.634 33.333 0.00 0.00 32.17 2.17
2086 3468 7.893658 ACCTCCGTCTCATAATATAAACGATT 58.106 34.615 0.00 0.00 32.17 3.34
2087 3469 7.463961 ACCTCCGTCTCATAATATAAACGAT 57.536 36.000 0.00 0.00 32.17 3.73
2088 3470 6.889301 ACCTCCGTCTCATAATATAAACGA 57.111 37.500 0.00 0.00 32.17 3.85
2089 3471 7.814642 ACTACCTCCGTCTCATAATATAAACG 58.185 38.462 0.00 0.00 0.00 3.60
2122 3509 8.958119 TGCCTTGGTCTTAATTTATACTAGTG 57.042 34.615 5.39 0.00 0.00 2.74
2145 3532 4.702131 AGTGGTGTTTTATTCATCCTCTGC 59.298 41.667 0.00 0.00 0.00 4.26
2417 3811 6.250104 CGAAGGTAGAACAACAAGTATCGTAC 59.750 42.308 0.00 0.00 0.00 3.67
2443 4055 0.989890 CCGTTGGATTTCTCGTCGTC 59.010 55.000 0.00 0.00 0.00 4.20
2509 4121 7.633361 TGTCGTCTTTTTACATACTCTGTTC 57.367 36.000 0.00 0.00 39.39 3.18
2514 4126 9.740239 TGGTATATGTCGTCTTTTTACATACTC 57.260 33.333 0.00 0.00 38.53 2.59
2576 4188 2.955022 AATGGATCTGCAGGCCGCTC 62.955 60.000 15.13 9.18 43.06 5.03
2608 4220 2.125350 GAGGACGCTTGGGCAGAG 60.125 66.667 0.00 0.00 38.60 3.35
2615 4227 1.079127 AACGATGGGAGGACGCTTG 60.079 57.895 0.00 0.00 0.00 4.01
2626 4238 3.853330 CGACGGCAGCAACGATGG 61.853 66.667 0.00 0.00 34.93 3.51
2673 4285 2.361737 GAACAGAGCCCCCTTGCC 60.362 66.667 0.00 0.00 0.00 4.52
2674 4286 2.361737 GGAACAGAGCCCCCTTGC 60.362 66.667 0.00 0.00 0.00 4.01
2675 4287 1.001641 CAGGAACAGAGCCCCCTTG 60.002 63.158 0.00 0.00 0.00 3.61
2676 4288 1.068352 AACAGGAACAGAGCCCCCTT 61.068 55.000 0.00 0.00 0.00 3.95
2677 4289 1.464198 AACAGGAACAGAGCCCCCT 60.464 57.895 0.00 0.00 0.00 4.79
2678 4290 1.303643 CAACAGGAACAGAGCCCCC 60.304 63.158 0.00 0.00 0.00 5.40
2679 4291 1.973812 GCAACAGGAACAGAGCCCC 60.974 63.158 0.00 0.00 0.00 5.80
2680 4292 0.324943 TAGCAACAGGAACAGAGCCC 59.675 55.000 0.00 0.00 0.00 5.19
2681 4293 2.409948 ATAGCAACAGGAACAGAGCC 57.590 50.000 0.00 0.00 0.00 4.70
2682 4294 2.349886 CGAATAGCAACAGGAACAGAGC 59.650 50.000 0.00 0.00 0.00 4.09
2683 4295 3.614616 GTCGAATAGCAACAGGAACAGAG 59.385 47.826 0.00 0.00 0.00 3.35
2684 4296 3.585862 GTCGAATAGCAACAGGAACAGA 58.414 45.455 0.00 0.00 0.00 3.41
2685 4297 2.345641 CGTCGAATAGCAACAGGAACAG 59.654 50.000 0.00 0.00 0.00 3.16
2691 4303 1.920574 CACCTCGTCGAATAGCAACAG 59.079 52.381 0.00 0.00 0.00 3.16
2713 4325 1.349026 AGCCATTGCCTATACATCGCT 59.651 47.619 0.00 0.00 38.69 4.93
2726 4338 1.546923 TGGACTGCATCAAAGCCATTG 59.453 47.619 0.00 0.00 40.58 2.82
2744 4356 2.025898 TGCTGCATCATAACCACATGG 58.974 47.619 0.00 0.00 42.17 3.66
2747 4359 1.097232 GCTGCTGCATCATAACCACA 58.903 50.000 11.11 0.00 39.41 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.