Multiple sequence alignment - TraesCS3D01G176200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G176200 chr3D 100.000 3269 0 0 1 3269 157658482 157661750 0.000000e+00 6037
1 TraesCS3D01G176200 chr3D 81.804 654 74 20 1203 1845 157750070 157750689 1.050000e-139 507
2 TraesCS3D01G176200 chr3D 92.157 153 12 0 412 564 11850201 11850049 1.980000e-52 217
3 TraesCS3D01G176200 chr3D 90.506 158 14 1 408 564 572121524 572121681 1.190000e-49 207
4 TraesCS3D01G176200 chr3A 91.202 2762 152 34 569 3269 170487103 170484372 0.000000e+00 3670
5 TraesCS3D01G176200 chr3A 84.167 600 58 25 1203 1788 170391046 170390470 6.170000e-152 547
6 TraesCS3D01G176200 chr3B 90.859 1083 57 15 1187 2237 228983012 228984084 0.000000e+00 1413
7 TraesCS3D01G176200 chr3B 89.990 1039 88 8 2238 3269 228994945 228995974 0.000000e+00 1328
8 TraesCS3D01G176200 chr3B 93.718 589 22 7 576 1153 228982431 228983015 0.000000e+00 869
9 TraesCS3D01G176200 chr3B 83.779 598 67 23 1203 1790 229006293 229006870 1.030000e-149 540
10 TraesCS3D01G176200 chr3B 89.634 164 16 1 402 564 762999044 762999207 1.190000e-49 207
11 TraesCS3D01G176200 chr6D 79.014 629 60 29 1203 1825 438518582 438519144 6.670000e-97 364
12 TraesCS3D01G176200 chr1B 93.631 157 10 0 408 564 565932914 565932758 5.450000e-58 235
13 TraesCS3D01G176200 chr7B 77.230 426 67 15 1225 1624 750391042 750390621 4.250000e-54 222
14 TraesCS3D01G176200 chr1D 91.772 158 12 1 408 564 485203298 485203455 5.490000e-53 219
15 TraesCS3D01G176200 chr7A 77.069 423 67 14 1222 1618 732842273 732842691 1.980000e-52 217
16 TraesCS3D01G176200 chr7A 84.906 106 13 2 1658 1763 732842818 732842920 1.600000e-18 104
17 TraesCS3D01G176200 chr7D 76.869 428 70 16 1222 1624 633695407 633694984 7.100000e-52 215
18 TraesCS3D01G176200 chr7D 83.486 109 15 2 1658 1766 633694860 633694755 7.460000e-17 99
19 TraesCS3D01G176200 chr4A 92.617 149 11 0 416 564 669391356 669391208 7.100000e-52 215
20 TraesCS3D01G176200 chr5D 91.139 158 13 1 408 564 439787423 439787266 2.560000e-51 213
21 TraesCS3D01G176200 chr5D 87.912 182 16 6 398 576 448923525 448923347 3.310000e-50 209
22 TraesCS3D01G176200 chr2D 91.946 149 12 0 416 564 534124506 534124358 3.310000e-50 209
23 TraesCS3D01G176200 chr2B 88.182 110 12 1 1 109 441103825 441103934 2.650000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G176200 chr3D 157658482 157661750 3268 False 6037 6037 100.0000 1 3269 1 chr3D.!!$F1 3268
1 TraesCS3D01G176200 chr3D 157750070 157750689 619 False 507 507 81.8040 1203 1845 1 chr3D.!!$F2 642
2 TraesCS3D01G176200 chr3A 170484372 170487103 2731 True 3670 3670 91.2020 569 3269 1 chr3A.!!$R2 2700
3 TraesCS3D01G176200 chr3A 170390470 170391046 576 True 547 547 84.1670 1203 1788 1 chr3A.!!$R1 585
4 TraesCS3D01G176200 chr3B 228994945 228995974 1029 False 1328 1328 89.9900 2238 3269 1 chr3B.!!$F1 1031
5 TraesCS3D01G176200 chr3B 228982431 228984084 1653 False 1141 1413 92.2885 576 2237 2 chr3B.!!$F4 1661
6 TraesCS3D01G176200 chr3B 229006293 229006870 577 False 540 540 83.7790 1203 1790 1 chr3B.!!$F2 587
7 TraesCS3D01G176200 chr6D 438518582 438519144 562 False 364 364 79.0140 1203 1825 1 chr6D.!!$F1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.037232 GGGTTGGAGAACTGTCCGAG 60.037 60.0 0.0 0.0 39.81 4.63 F
1190 1204 0.036388 AGGGTGTAGACATGCCGTTG 60.036 55.0 0.0 0.0 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 1972 0.250727 ACACTGGCACACCCACATAC 60.251 55.0 0.00 0.00 39.18 2.39 R
2467 2573 0.109342 AAACCCCTCTGTGAGCACTG 59.891 55.0 1.99 1.78 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.407967 GGCGATGGGGTGAGGGAA 61.408 66.667 0.00 0.00 0.00 3.97
34 35 2.190578 GCGATGGGGTGAGGGAAG 59.809 66.667 0.00 0.00 0.00 3.46
35 36 2.911143 CGATGGGGTGAGGGAAGG 59.089 66.667 0.00 0.00 0.00 3.46
36 37 1.689233 CGATGGGGTGAGGGAAGGA 60.689 63.158 0.00 0.00 0.00 3.36
37 38 1.690219 CGATGGGGTGAGGGAAGGAG 61.690 65.000 0.00 0.00 0.00 3.69
38 39 1.308216 ATGGGGTGAGGGAAGGAGG 60.308 63.158 0.00 0.00 0.00 4.30
39 40 1.837533 ATGGGGTGAGGGAAGGAGGA 61.838 60.000 0.00 0.00 0.00 3.71
40 41 1.690985 GGGGTGAGGGAAGGAGGAG 60.691 68.421 0.00 0.00 0.00 3.69
41 42 1.081277 GGGTGAGGGAAGGAGGAGT 59.919 63.158 0.00 0.00 0.00 3.85
42 43 0.978667 GGGTGAGGGAAGGAGGAGTC 60.979 65.000 0.00 0.00 0.00 3.36
43 44 1.324005 GGTGAGGGAAGGAGGAGTCG 61.324 65.000 0.00 0.00 0.00 4.18
44 45 1.000486 TGAGGGAAGGAGGAGTCGG 60.000 63.158 0.00 0.00 0.00 4.79
45 46 2.364448 AGGGAAGGAGGAGTCGGC 60.364 66.667 0.00 0.00 0.00 5.54
46 47 2.683933 GGGAAGGAGGAGTCGGCA 60.684 66.667 0.00 0.00 0.00 5.69
47 48 2.579738 GGAAGGAGGAGTCGGCAC 59.420 66.667 0.00 0.00 0.00 5.01
48 49 2.579738 GAAGGAGGAGTCGGCACC 59.420 66.667 0.00 0.00 0.00 5.01
49 50 3.358076 GAAGGAGGAGTCGGCACCG 62.358 68.421 1.73 1.73 41.35 4.94
50 51 3.881019 AAGGAGGAGTCGGCACCGA 62.881 63.158 7.89 7.89 46.87 4.69
66 67 4.832608 GACGGCGGCTAGGGTTGG 62.833 72.222 13.24 0.00 0.00 3.77
68 69 4.530857 CGGCGGCTAGGGTTGGAG 62.531 72.222 7.61 0.00 0.00 3.86
69 70 3.081409 GGCGGCTAGGGTTGGAGA 61.081 66.667 0.00 0.00 0.00 3.71
70 71 2.666098 GGCGGCTAGGGTTGGAGAA 61.666 63.158 0.00 0.00 0.00 2.87
71 72 1.449778 GCGGCTAGGGTTGGAGAAC 60.450 63.158 0.00 0.00 0.00 3.01
72 73 1.900545 GCGGCTAGGGTTGGAGAACT 61.901 60.000 0.00 0.00 32.15 3.01
73 74 0.108138 CGGCTAGGGTTGGAGAACTG 60.108 60.000 0.00 0.00 32.15 3.16
74 75 0.984995 GGCTAGGGTTGGAGAACTGT 59.015 55.000 0.00 0.00 32.15 3.55
75 76 1.066071 GGCTAGGGTTGGAGAACTGTC 60.066 57.143 0.00 0.00 32.15 3.51
76 77 1.066071 GCTAGGGTTGGAGAACTGTCC 60.066 57.143 0.00 0.00 37.10 4.02
77 78 1.204941 CTAGGGTTGGAGAACTGTCCG 59.795 57.143 0.00 0.00 39.81 4.79
78 79 0.471211 AGGGTTGGAGAACTGTCCGA 60.471 55.000 0.00 0.00 39.81 4.55
79 80 0.037232 GGGTTGGAGAACTGTCCGAG 60.037 60.000 0.00 0.00 39.81 4.63
80 81 0.680061 GGTTGGAGAACTGTCCGAGT 59.320 55.000 0.00 0.00 39.81 4.18
81 82 1.336980 GGTTGGAGAACTGTCCGAGTC 60.337 57.143 0.00 0.00 39.81 3.36
82 83 0.596577 TTGGAGAACTGTCCGAGTCG 59.403 55.000 5.29 5.29 39.81 4.18
83 84 1.153997 GGAGAACTGTCCGAGTCGC 60.154 63.158 7.12 0.00 31.73 5.19
84 85 1.587933 GGAGAACTGTCCGAGTCGCT 61.588 60.000 7.12 0.00 31.73 4.93
85 86 0.455295 GAGAACTGTCCGAGTCGCTG 60.455 60.000 7.12 1.23 31.73 5.18
86 87 0.889638 AGAACTGTCCGAGTCGCTGA 60.890 55.000 7.12 0.00 31.73 4.26
87 88 0.455295 GAACTGTCCGAGTCGCTGAG 60.455 60.000 7.12 4.26 31.73 3.35
88 89 2.202544 CTGTCCGAGTCGCTGAGC 60.203 66.667 7.12 0.00 0.00 4.26
89 90 2.982744 CTGTCCGAGTCGCTGAGCA 61.983 63.158 7.12 0.17 0.00 4.26
90 91 2.202544 GTCCGAGTCGCTGAGCAG 60.203 66.667 7.12 0.00 0.00 4.24
91 92 3.443925 TCCGAGTCGCTGAGCAGG 61.444 66.667 7.12 0.00 0.00 4.85
92 93 4.504916 CCGAGTCGCTGAGCAGGG 62.505 72.222 7.12 8.11 42.08 4.45
93 94 4.504916 CGAGTCGCTGAGCAGGGG 62.505 72.222 4.88 0.00 41.19 4.79
94 95 4.828925 GAGTCGCTGAGCAGGGGC 62.829 72.222 10.71 10.71 45.04 5.80
116 117 3.966543 CGGGGGTCAGGTGCCTTT 61.967 66.667 0.00 0.00 0.00 3.11
117 118 2.283173 GGGGGTCAGGTGCCTTTG 60.283 66.667 0.00 0.00 0.00 2.77
118 119 2.840753 GGGGGTCAGGTGCCTTTGA 61.841 63.158 0.00 0.00 0.00 2.69
119 120 1.303643 GGGGTCAGGTGCCTTTGAG 60.304 63.158 0.00 0.00 0.00 3.02
120 121 1.761174 GGGTCAGGTGCCTTTGAGA 59.239 57.895 0.00 0.00 0.00 3.27
121 122 0.322008 GGGTCAGGTGCCTTTGAGAG 60.322 60.000 0.00 0.00 0.00 3.20
122 123 0.398318 GGTCAGGTGCCTTTGAGAGT 59.602 55.000 0.00 0.00 0.00 3.24
123 124 1.517242 GTCAGGTGCCTTTGAGAGTG 58.483 55.000 0.00 0.00 0.00 3.51
124 125 0.250467 TCAGGTGCCTTTGAGAGTGC 60.250 55.000 0.00 0.00 0.00 4.40
125 126 0.250640 CAGGTGCCTTTGAGAGTGCT 60.251 55.000 0.00 0.00 0.00 4.40
126 127 0.475906 AGGTGCCTTTGAGAGTGCTT 59.524 50.000 0.00 0.00 0.00 3.91
127 128 1.133668 AGGTGCCTTTGAGAGTGCTTT 60.134 47.619 0.00 0.00 0.00 3.51
128 129 1.683385 GGTGCCTTTGAGAGTGCTTTT 59.317 47.619 0.00 0.00 0.00 2.27
129 130 2.544486 GGTGCCTTTGAGAGTGCTTTTG 60.544 50.000 0.00 0.00 0.00 2.44
130 131 2.358898 GTGCCTTTGAGAGTGCTTTTGA 59.641 45.455 0.00 0.00 0.00 2.69
131 132 3.005155 GTGCCTTTGAGAGTGCTTTTGAT 59.995 43.478 0.00 0.00 0.00 2.57
132 133 3.638160 TGCCTTTGAGAGTGCTTTTGATT 59.362 39.130 0.00 0.00 0.00 2.57
133 134 3.985925 GCCTTTGAGAGTGCTTTTGATTG 59.014 43.478 0.00 0.00 0.00 2.67
134 135 4.500375 GCCTTTGAGAGTGCTTTTGATTGT 60.500 41.667 0.00 0.00 0.00 2.71
135 136 4.980434 CCTTTGAGAGTGCTTTTGATTGTG 59.020 41.667 0.00 0.00 0.00 3.33
136 137 3.631145 TGAGAGTGCTTTTGATTGTGC 57.369 42.857 0.00 0.00 0.00 4.57
137 138 3.216800 TGAGAGTGCTTTTGATTGTGCT 58.783 40.909 0.00 0.00 0.00 4.40
138 139 4.388485 TGAGAGTGCTTTTGATTGTGCTA 58.612 39.130 0.00 0.00 0.00 3.49
139 140 4.821260 TGAGAGTGCTTTTGATTGTGCTAA 59.179 37.500 0.00 0.00 0.00 3.09
140 141 5.299028 TGAGAGTGCTTTTGATTGTGCTAAA 59.701 36.000 0.00 0.00 0.00 1.85
141 142 6.147864 AGAGTGCTTTTGATTGTGCTAAAA 57.852 33.333 0.00 0.00 0.00 1.52
142 143 6.572519 AGAGTGCTTTTGATTGTGCTAAAAA 58.427 32.000 0.00 0.00 0.00 1.94
165 166 7.568199 AAAGGATAGAATATGGTTTTGGACG 57.432 36.000 0.00 0.00 0.00 4.79
166 167 6.494666 AGGATAGAATATGGTTTTGGACGA 57.505 37.500 0.00 0.00 0.00 4.20
167 168 6.895782 AGGATAGAATATGGTTTTGGACGAA 58.104 36.000 0.00 0.00 0.00 3.85
168 169 6.992715 AGGATAGAATATGGTTTTGGACGAAG 59.007 38.462 0.00 0.00 0.00 3.79
169 170 6.990349 GGATAGAATATGGTTTTGGACGAAGA 59.010 38.462 0.00 0.00 0.00 2.87
170 171 7.661847 GGATAGAATATGGTTTTGGACGAAGAT 59.338 37.037 0.00 0.00 0.00 2.40
171 172 6.927294 AGAATATGGTTTTGGACGAAGATC 57.073 37.500 0.00 0.00 0.00 2.75
172 173 5.523916 AGAATATGGTTTTGGACGAAGATCG 59.476 40.000 0.00 0.00 46.93 3.69
173 174 2.823924 TGGTTTTGGACGAAGATCGA 57.176 45.000 6.78 0.00 43.74 3.59
174 175 3.114668 TGGTTTTGGACGAAGATCGAA 57.885 42.857 6.78 0.00 43.74 3.71
175 176 3.064207 TGGTTTTGGACGAAGATCGAAG 58.936 45.455 6.78 0.00 43.74 3.79
176 177 3.243941 TGGTTTTGGACGAAGATCGAAGA 60.244 43.478 6.78 0.00 43.74 2.87
177 178 3.744426 GGTTTTGGACGAAGATCGAAGAA 59.256 43.478 6.78 0.00 43.74 2.52
178 179 4.212636 GGTTTTGGACGAAGATCGAAGAAA 59.787 41.667 6.78 0.00 43.74 2.52
179 180 5.277634 GGTTTTGGACGAAGATCGAAGAAAA 60.278 40.000 6.78 5.42 43.74 2.29
180 181 6.371389 GTTTTGGACGAAGATCGAAGAAAAT 58.629 36.000 6.78 0.00 43.74 1.82
181 182 5.530519 TTGGACGAAGATCGAAGAAAATG 57.469 39.130 6.78 0.00 43.74 2.32
182 183 3.370978 TGGACGAAGATCGAAGAAAATGC 59.629 43.478 6.78 0.00 43.74 3.56
183 184 3.242446 GGACGAAGATCGAAGAAAATGCC 60.242 47.826 6.78 0.00 43.74 4.40
184 185 3.600388 ACGAAGATCGAAGAAAATGCCT 58.400 40.909 6.78 0.00 43.74 4.75
185 186 4.003648 ACGAAGATCGAAGAAAATGCCTT 58.996 39.130 6.78 0.00 43.74 4.35
186 187 4.093556 ACGAAGATCGAAGAAAATGCCTTC 59.906 41.667 6.78 0.00 43.74 3.46
187 188 4.494855 CGAAGATCGAAGAAAATGCCTTCC 60.495 45.833 0.00 0.00 43.74 3.46
188 189 3.955471 AGATCGAAGAAAATGCCTTCCA 58.045 40.909 0.00 0.00 43.58 3.53
189 190 4.335416 AGATCGAAGAAAATGCCTTCCAA 58.665 39.130 0.00 0.00 43.58 3.53
190 191 4.766891 AGATCGAAGAAAATGCCTTCCAAA 59.233 37.500 0.00 0.00 43.58 3.28
191 192 4.237349 TCGAAGAAAATGCCTTCCAAAC 57.763 40.909 0.00 0.00 37.36 2.93
192 193 3.634448 TCGAAGAAAATGCCTTCCAAACA 59.366 39.130 0.00 0.00 37.36 2.83
193 194 3.735746 CGAAGAAAATGCCTTCCAAACAC 59.264 43.478 0.00 0.00 37.36 3.32
194 195 4.499696 CGAAGAAAATGCCTTCCAAACACT 60.500 41.667 0.00 0.00 37.36 3.55
195 196 4.590850 AGAAAATGCCTTCCAAACACTC 57.409 40.909 0.00 0.00 0.00 3.51
196 197 3.960102 AGAAAATGCCTTCCAAACACTCA 59.040 39.130 0.00 0.00 0.00 3.41
197 198 4.405358 AGAAAATGCCTTCCAAACACTCAA 59.595 37.500 0.00 0.00 0.00 3.02
198 199 4.751767 AAATGCCTTCCAAACACTCAAA 57.248 36.364 0.00 0.00 0.00 2.69
199 200 4.326504 AATGCCTTCCAAACACTCAAAG 57.673 40.909 0.00 0.00 0.00 2.77
200 201 2.733956 TGCCTTCCAAACACTCAAAGT 58.266 42.857 0.00 0.00 0.00 2.66
210 211 1.959042 CACTCAAAGTGCCACTCAGT 58.041 50.000 0.00 0.00 39.62 3.41
211 212 1.869767 CACTCAAAGTGCCACTCAGTC 59.130 52.381 0.00 0.00 39.62 3.51
212 213 1.765314 ACTCAAAGTGCCACTCAGTCT 59.235 47.619 0.00 0.00 0.00 3.24
213 214 2.224161 ACTCAAAGTGCCACTCAGTCTC 60.224 50.000 0.00 0.00 0.00 3.36
214 215 1.070758 TCAAAGTGCCACTCAGTCTCC 59.929 52.381 0.00 0.00 0.00 3.71
215 216 0.398318 AAAGTGCCACTCAGTCTCCC 59.602 55.000 0.00 0.00 0.00 4.30
216 217 0.472734 AAGTGCCACTCAGTCTCCCT 60.473 55.000 0.00 0.00 0.00 4.20
217 218 1.190833 AGTGCCACTCAGTCTCCCTG 61.191 60.000 0.00 0.00 42.97 4.45
218 219 2.267324 GCCACTCAGTCTCCCTGC 59.733 66.667 0.00 0.00 41.25 4.85
219 220 2.587247 GCCACTCAGTCTCCCTGCA 61.587 63.158 0.00 0.00 41.25 4.41
220 221 1.595882 CCACTCAGTCTCCCTGCAG 59.404 63.158 6.78 6.78 41.25 4.41
221 222 0.902048 CCACTCAGTCTCCCTGCAGA 60.902 60.000 17.39 0.00 41.25 4.26
222 223 0.972134 CACTCAGTCTCCCTGCAGAA 59.028 55.000 17.39 1.42 41.25 3.02
223 224 1.345741 CACTCAGTCTCCCTGCAGAAA 59.654 52.381 17.39 1.00 41.25 2.52
224 225 2.050144 ACTCAGTCTCCCTGCAGAAAA 58.950 47.619 17.39 0.00 41.25 2.29
225 226 2.439507 ACTCAGTCTCCCTGCAGAAAAA 59.560 45.455 17.39 0.00 41.25 1.94
241 242 2.435372 AAAAAGGTGCCACTCAGTCA 57.565 45.000 0.00 0.00 0.00 3.41
242 243 2.664402 AAAAGGTGCCACTCAGTCAT 57.336 45.000 0.00 0.00 0.00 3.06
243 244 2.191128 AAAGGTGCCACTCAGTCATC 57.809 50.000 0.00 0.00 0.00 2.92
244 245 1.059098 AAGGTGCCACTCAGTCATCA 58.941 50.000 0.00 0.00 0.00 3.07
245 246 1.059098 AGGTGCCACTCAGTCATCAA 58.941 50.000 0.00 0.00 0.00 2.57
246 247 1.421268 AGGTGCCACTCAGTCATCAAA 59.579 47.619 0.00 0.00 0.00 2.69
247 248 1.537202 GGTGCCACTCAGTCATCAAAC 59.463 52.381 0.00 0.00 0.00 2.93
248 249 2.221169 GTGCCACTCAGTCATCAAACA 58.779 47.619 0.00 0.00 0.00 2.83
249 250 2.031682 GTGCCACTCAGTCATCAAACAC 60.032 50.000 0.00 0.00 0.00 3.32
250 251 2.158769 TGCCACTCAGTCATCAAACACT 60.159 45.455 0.00 0.00 0.00 3.55
251 252 3.070878 TGCCACTCAGTCATCAAACACTA 59.929 43.478 0.00 0.00 0.00 2.74
252 253 4.256920 GCCACTCAGTCATCAAACACTAT 58.743 43.478 0.00 0.00 0.00 2.12
253 254 4.093998 GCCACTCAGTCATCAAACACTATG 59.906 45.833 0.00 0.00 0.00 2.23
254 255 4.633126 CCACTCAGTCATCAAACACTATGG 59.367 45.833 0.00 0.00 0.00 2.74
255 256 4.093998 CACTCAGTCATCAAACACTATGGC 59.906 45.833 0.00 0.00 0.00 4.40
256 257 4.256110 CTCAGTCATCAAACACTATGGCA 58.744 43.478 0.00 0.00 29.97 4.92
257 258 4.847198 TCAGTCATCAAACACTATGGCAT 58.153 39.130 4.88 4.88 29.97 4.40
258 259 4.877823 TCAGTCATCAAACACTATGGCATC 59.122 41.667 1.65 0.00 29.97 3.91
259 260 4.637091 CAGTCATCAAACACTATGGCATCA 59.363 41.667 1.65 0.00 29.97 3.07
260 261 5.298527 CAGTCATCAAACACTATGGCATCAT 59.701 40.000 1.65 0.00 37.40 2.45
261 262 5.530171 AGTCATCAAACACTATGGCATCATC 59.470 40.000 1.65 0.00 34.96 2.92
262 263 5.297527 GTCATCAAACACTATGGCATCATCA 59.702 40.000 1.65 0.00 34.96 3.07
263 264 5.529800 TCATCAAACACTATGGCATCATCAG 59.470 40.000 1.65 0.00 34.96 2.90
264 265 3.628942 TCAAACACTATGGCATCATCAGC 59.371 43.478 1.65 0.00 34.96 4.26
273 274 2.776312 GCATCATCAGCCATTCACTG 57.224 50.000 0.00 0.00 36.44 3.66
274 275 2.022195 GCATCATCAGCCATTCACTGT 58.978 47.619 0.00 0.00 36.50 3.55
275 276 2.033049 GCATCATCAGCCATTCACTGTC 59.967 50.000 0.00 0.00 36.50 3.51
276 277 3.542648 CATCATCAGCCATTCACTGTCT 58.457 45.455 0.00 0.00 36.50 3.41
277 278 2.981898 TCATCAGCCATTCACTGTCTG 58.018 47.619 0.00 0.00 36.50 3.51
278 279 2.568509 TCATCAGCCATTCACTGTCTGA 59.431 45.455 0.00 0.00 38.05 3.27
279 280 3.199289 TCATCAGCCATTCACTGTCTGAT 59.801 43.478 2.59 2.59 43.07 2.90
280 281 3.257469 TCAGCCATTCACTGTCTGATC 57.743 47.619 0.00 0.00 36.50 2.92
281 282 2.836372 TCAGCCATTCACTGTCTGATCT 59.164 45.455 0.00 0.00 36.50 2.75
282 283 2.937149 CAGCCATTCACTGTCTGATCTG 59.063 50.000 0.00 0.00 0.00 2.90
283 284 1.669779 GCCATTCACTGTCTGATCTGC 59.330 52.381 0.00 0.00 0.00 4.26
284 285 2.680221 GCCATTCACTGTCTGATCTGCT 60.680 50.000 0.00 0.00 0.00 4.24
285 286 3.431346 GCCATTCACTGTCTGATCTGCTA 60.431 47.826 0.00 0.00 0.00 3.49
286 287 4.763073 CCATTCACTGTCTGATCTGCTAA 58.237 43.478 0.00 0.00 0.00 3.09
287 288 5.366460 CCATTCACTGTCTGATCTGCTAAT 58.634 41.667 0.00 0.00 0.00 1.73
288 289 6.519382 CCATTCACTGTCTGATCTGCTAATA 58.481 40.000 0.00 0.00 0.00 0.98
289 290 6.988580 CCATTCACTGTCTGATCTGCTAATAA 59.011 38.462 0.00 0.00 0.00 1.40
290 291 7.496920 CCATTCACTGTCTGATCTGCTAATAAA 59.503 37.037 0.00 0.00 0.00 1.40
291 292 8.886719 CATTCACTGTCTGATCTGCTAATAAAA 58.113 33.333 0.00 0.00 0.00 1.52
292 293 9.624373 ATTCACTGTCTGATCTGCTAATAAAAT 57.376 29.630 0.00 0.00 0.00 1.82
293 294 8.429493 TCACTGTCTGATCTGCTAATAAAATG 57.571 34.615 0.00 0.00 0.00 2.32
294 295 8.260114 TCACTGTCTGATCTGCTAATAAAATGA 58.740 33.333 0.00 0.00 0.00 2.57
295 296 9.053840 CACTGTCTGATCTGCTAATAAAATGAT 57.946 33.333 0.00 0.00 0.00 2.45
313 314 5.929697 ATGATAGAATATGGTGTTGCACG 57.070 39.130 0.00 0.00 34.83 5.34
314 315 4.126437 TGATAGAATATGGTGTTGCACGG 58.874 43.478 0.00 0.00 34.83 4.94
315 316 2.779755 AGAATATGGTGTTGCACGGA 57.220 45.000 0.00 0.00 34.83 4.69
316 317 2.632377 AGAATATGGTGTTGCACGGAG 58.368 47.619 0.00 0.00 34.83 4.63
317 318 2.236146 AGAATATGGTGTTGCACGGAGA 59.764 45.455 0.00 0.00 34.83 3.71
318 319 3.118261 AGAATATGGTGTTGCACGGAGAT 60.118 43.478 0.00 0.00 34.83 2.75
319 320 2.309528 TATGGTGTTGCACGGAGATC 57.690 50.000 0.00 0.00 34.83 2.75
320 321 0.740868 ATGGTGTTGCACGGAGATCG 60.741 55.000 0.00 0.00 45.88 3.69
321 322 1.080093 GGTGTTGCACGGAGATCGA 60.080 57.895 0.00 0.00 42.43 3.59
322 323 0.669318 GGTGTTGCACGGAGATCGAA 60.669 55.000 0.00 0.00 42.43 3.71
323 324 0.716108 GTGTTGCACGGAGATCGAAG 59.284 55.000 0.00 0.00 42.43 3.79
324 325 0.601057 TGTTGCACGGAGATCGAAGA 59.399 50.000 0.00 0.00 42.43 2.87
325 326 1.000394 TGTTGCACGGAGATCGAAGAA 60.000 47.619 0.00 0.00 43.58 2.52
326 327 2.066262 GTTGCACGGAGATCGAAGAAA 58.934 47.619 0.00 0.00 43.58 2.52
327 328 2.448926 TGCACGGAGATCGAAGAAAA 57.551 45.000 0.00 0.00 43.58 2.29
328 329 2.972625 TGCACGGAGATCGAAGAAAAT 58.027 42.857 0.00 0.00 43.58 1.82
329 330 2.672874 TGCACGGAGATCGAAGAAAATG 59.327 45.455 0.00 0.00 43.58 2.32
330 331 2.537730 GCACGGAGATCGAAGAAAATGC 60.538 50.000 0.00 0.00 43.58 3.56
331 332 2.030946 CACGGAGATCGAAGAAAATGCC 59.969 50.000 0.00 0.00 43.58 4.40
332 333 2.093447 ACGGAGATCGAAGAAAATGCCT 60.093 45.455 0.00 0.00 43.58 4.75
333 334 2.541762 CGGAGATCGAAGAAAATGCCTC 59.458 50.000 0.00 0.00 43.58 4.70
334 335 2.875317 GGAGATCGAAGAAAATGCCTCC 59.125 50.000 0.00 0.00 43.58 4.30
335 336 2.875317 GAGATCGAAGAAAATGCCTCCC 59.125 50.000 0.00 0.00 43.58 4.30
336 337 2.239654 AGATCGAAGAAAATGCCTCCCA 59.760 45.455 0.00 0.00 43.58 4.37
337 338 2.577606 TCGAAGAAAATGCCTCCCAA 57.422 45.000 0.00 0.00 0.00 4.12
338 339 2.870175 TCGAAGAAAATGCCTCCCAAA 58.130 42.857 0.00 0.00 0.00 3.28
339 340 2.556622 TCGAAGAAAATGCCTCCCAAAC 59.443 45.455 0.00 0.00 0.00 2.93
340 341 2.295909 CGAAGAAAATGCCTCCCAAACA 59.704 45.455 0.00 0.00 0.00 2.83
341 342 3.653344 GAAGAAAATGCCTCCCAAACAC 58.347 45.455 0.00 0.00 0.00 3.32
342 343 2.962859 AGAAAATGCCTCCCAAACACT 58.037 42.857 0.00 0.00 0.00 3.55
343 344 2.893489 AGAAAATGCCTCCCAAACACTC 59.107 45.455 0.00 0.00 0.00 3.51
344 345 2.380064 AAATGCCTCCCAAACACTCA 57.620 45.000 0.00 0.00 0.00 3.41
345 346 2.380064 AATGCCTCCCAAACACTCAA 57.620 45.000 0.00 0.00 0.00 3.02
346 347 2.380064 ATGCCTCCCAAACACTCAAA 57.620 45.000 0.00 0.00 0.00 2.69
347 348 2.151502 TGCCTCCCAAACACTCAAAA 57.848 45.000 0.00 0.00 0.00 2.44
348 349 2.676748 TGCCTCCCAAACACTCAAAAT 58.323 42.857 0.00 0.00 0.00 1.82
349 350 2.364970 TGCCTCCCAAACACTCAAAATG 59.635 45.455 0.00 0.00 0.00 2.32
350 351 2.867647 GCCTCCCAAACACTCAAAATGC 60.868 50.000 0.00 0.00 0.00 3.56
351 352 2.289010 CCTCCCAAACACTCAAAATGCC 60.289 50.000 0.00 0.00 0.00 4.40
352 353 2.629617 CTCCCAAACACTCAAAATGCCT 59.370 45.455 0.00 0.00 0.00 4.75
353 354 3.826157 CTCCCAAACACTCAAAATGCCTA 59.174 43.478 0.00 0.00 0.00 3.93
354 355 3.572255 TCCCAAACACTCAAAATGCCTAC 59.428 43.478 0.00 0.00 0.00 3.18
355 356 3.320541 CCCAAACACTCAAAATGCCTACA 59.679 43.478 0.00 0.00 0.00 2.74
356 357 4.021192 CCCAAACACTCAAAATGCCTACAT 60.021 41.667 0.00 0.00 38.49 2.29
357 358 5.184864 CCCAAACACTCAAAATGCCTACATA 59.815 40.000 0.00 0.00 34.62 2.29
358 359 6.295011 CCCAAACACTCAAAATGCCTACATAA 60.295 38.462 0.00 0.00 34.62 1.90
359 360 7.151308 CCAAACACTCAAAATGCCTACATAAA 58.849 34.615 0.00 0.00 34.62 1.40
360 361 7.655328 CCAAACACTCAAAATGCCTACATAAAA 59.345 33.333 0.00 0.00 34.62 1.52
361 362 8.702438 CAAACACTCAAAATGCCTACATAAAAG 58.298 33.333 0.00 0.00 34.62 2.27
362 363 6.389906 ACACTCAAAATGCCTACATAAAAGC 58.610 36.000 0.00 0.00 34.62 3.51
363 364 6.209391 ACACTCAAAATGCCTACATAAAAGCT 59.791 34.615 0.00 0.00 34.62 3.74
364 365 6.749118 CACTCAAAATGCCTACATAAAAGCTC 59.251 38.462 0.00 0.00 34.62 4.09
365 366 5.879237 TCAAAATGCCTACATAAAAGCTCG 58.121 37.500 0.00 0.00 34.62 5.03
366 367 5.645929 TCAAAATGCCTACATAAAAGCTCGA 59.354 36.000 0.00 0.00 34.62 4.04
367 368 6.150307 TCAAAATGCCTACATAAAAGCTCGAA 59.850 34.615 0.00 0.00 34.62 3.71
368 369 5.485662 AATGCCTACATAAAAGCTCGAAC 57.514 39.130 0.00 0.00 34.62 3.95
369 370 3.267483 TGCCTACATAAAAGCTCGAACC 58.733 45.455 0.00 0.00 0.00 3.62
370 371 2.284417 GCCTACATAAAAGCTCGAACCG 59.716 50.000 0.00 0.00 0.00 4.44
371 372 2.864343 CCTACATAAAAGCTCGAACCGG 59.136 50.000 0.00 0.00 0.00 5.28
372 373 1.734163 ACATAAAAGCTCGAACCGGG 58.266 50.000 6.32 0.00 0.00 5.73
373 374 1.276989 ACATAAAAGCTCGAACCGGGA 59.723 47.619 6.32 0.00 0.00 5.14
374 375 2.289819 ACATAAAAGCTCGAACCGGGAA 60.290 45.455 6.32 0.00 0.00 3.97
375 376 1.799544 TAAAAGCTCGAACCGGGAAC 58.200 50.000 6.32 0.00 0.00 3.62
376 377 0.108019 AAAAGCTCGAACCGGGAACT 59.892 50.000 6.32 0.00 0.00 3.01
377 378 0.320508 AAAGCTCGAACCGGGAACTC 60.321 55.000 6.32 0.00 0.00 3.01
378 379 1.186267 AAGCTCGAACCGGGAACTCT 61.186 55.000 6.32 0.00 0.00 3.24
379 380 0.323178 AGCTCGAACCGGGAACTCTA 60.323 55.000 6.32 0.00 0.00 2.43
380 381 0.529378 GCTCGAACCGGGAACTCTAA 59.471 55.000 6.32 0.00 0.00 2.10
381 382 1.136500 GCTCGAACCGGGAACTCTAAT 59.864 52.381 6.32 0.00 0.00 1.73
382 383 2.810650 CTCGAACCGGGAACTCTAATG 58.189 52.381 6.32 0.00 0.00 1.90
383 384 1.134907 TCGAACCGGGAACTCTAATGC 60.135 52.381 6.32 0.00 0.00 3.56
384 385 1.404986 CGAACCGGGAACTCTAATGCA 60.405 52.381 6.32 0.00 0.00 3.96
385 386 2.706890 GAACCGGGAACTCTAATGCAA 58.293 47.619 6.32 0.00 0.00 4.08
386 387 3.279434 GAACCGGGAACTCTAATGCAAT 58.721 45.455 6.32 0.00 0.00 3.56
387 388 3.366052 ACCGGGAACTCTAATGCAATT 57.634 42.857 6.32 0.00 41.28 2.32
388 389 3.016736 ACCGGGAACTCTAATGCAATTG 58.983 45.455 6.32 0.00 36.99 2.32
389 390 2.223572 CCGGGAACTCTAATGCAATTGC 60.224 50.000 23.69 23.69 36.99 3.56
435 436 6.422776 AAAAATAGCGCGCTATAGCATATT 57.577 33.333 43.81 32.21 42.21 1.28
436 437 5.395325 AAATAGCGCGCTATAGCATATTG 57.605 39.130 43.81 8.71 42.21 1.90
437 438 2.654749 AGCGCGCTATAGCATATTGA 57.345 45.000 35.79 0.00 42.21 2.57
438 439 2.534298 AGCGCGCTATAGCATATTGAG 58.466 47.619 35.79 10.23 42.21 3.02
439 440 2.164422 AGCGCGCTATAGCATATTGAGA 59.836 45.455 35.79 0.00 42.21 3.27
440 441 2.923655 GCGCGCTATAGCATATTGAGAA 59.076 45.455 26.67 0.00 42.21 2.87
441 442 3.553511 GCGCGCTATAGCATATTGAGAAT 59.446 43.478 26.67 0.00 42.21 2.40
442 443 4.033358 GCGCGCTATAGCATATTGAGAATT 59.967 41.667 26.67 0.00 42.21 2.17
443 444 5.446473 GCGCGCTATAGCATATTGAGAATTT 60.446 40.000 26.67 0.00 42.21 1.82
444 445 6.181255 CGCGCTATAGCATATTGAGAATTTC 58.819 40.000 23.99 0.00 42.21 2.17
445 446 6.481984 GCGCTATAGCATATTGAGAATTTCC 58.518 40.000 23.99 0.00 42.21 3.13
446 447 6.314896 GCGCTATAGCATATTGAGAATTTCCT 59.685 38.462 23.99 0.00 42.21 3.36
447 448 7.465245 GCGCTATAGCATATTGAGAATTTCCTC 60.465 40.741 23.99 0.00 42.21 3.71
448 449 7.253917 CGCTATAGCATATTGAGAATTTCCTCG 60.254 40.741 23.99 0.00 42.21 4.63
449 450 6.734104 ATAGCATATTGAGAATTTCCTCGC 57.266 37.500 0.00 0.00 35.99 5.03
450 451 4.712476 AGCATATTGAGAATTTCCTCGCT 58.288 39.130 0.00 0.00 35.99 4.93
451 452 5.858381 AGCATATTGAGAATTTCCTCGCTA 58.142 37.500 0.00 0.00 35.99 4.26
452 453 6.291377 AGCATATTGAGAATTTCCTCGCTAA 58.709 36.000 0.00 0.00 35.99 3.09
453 454 6.767902 AGCATATTGAGAATTTCCTCGCTAAA 59.232 34.615 0.00 0.00 35.99 1.85
454 455 7.446625 AGCATATTGAGAATTTCCTCGCTAAAT 59.553 33.333 0.00 0.00 35.99 1.40
455 456 8.721478 GCATATTGAGAATTTCCTCGCTAAATA 58.279 33.333 0.00 0.00 35.99 1.40
460 461 9.996554 TTGAGAATTTCCTCGCTAAATATATCA 57.003 29.630 0.00 0.00 35.99 2.15
461 462 9.645059 TGAGAATTTCCTCGCTAAATATATCAG 57.355 33.333 0.00 0.00 35.99 2.90
462 463 8.485976 AGAATTTCCTCGCTAAATATATCAGC 57.514 34.615 8.55 8.55 0.00 4.26
473 474 8.467402 GCTAAATATATCAGCGTACAATGTCT 57.533 34.615 0.00 0.00 0.00 3.41
474 475 8.587950 GCTAAATATATCAGCGTACAATGTCTC 58.412 37.037 0.00 0.00 0.00 3.36
475 476 7.568267 AAATATATCAGCGTACAATGTCTCG 57.432 36.000 0.00 0.00 0.00 4.04
482 483 4.870315 GCGTACAATGTCTCGCTAATAG 57.130 45.455 21.60 0.00 44.28 1.73
483 484 3.119792 GCGTACAATGTCTCGCTAATAGC 59.880 47.826 21.60 1.41 44.28 2.97
484 485 4.287720 CGTACAATGTCTCGCTAATAGCA 58.712 43.478 13.15 0.00 42.58 3.49
485 486 4.146616 CGTACAATGTCTCGCTAATAGCAC 59.853 45.833 13.15 3.79 42.58 4.40
486 487 3.116300 ACAATGTCTCGCTAATAGCACG 58.884 45.455 13.15 2.42 42.58 5.34
487 488 1.772182 ATGTCTCGCTAATAGCACGC 58.228 50.000 13.15 0.19 42.58 5.34
488 489 0.738975 TGTCTCGCTAATAGCACGCT 59.261 50.000 13.15 0.00 42.58 5.07
489 490 1.944709 TGTCTCGCTAATAGCACGCTA 59.055 47.619 13.15 0.39 42.58 4.26
490 491 2.552743 TGTCTCGCTAATAGCACGCTAT 59.447 45.455 13.15 5.72 42.58 2.97
491 492 3.749609 TGTCTCGCTAATAGCACGCTATA 59.250 43.478 13.15 1.16 42.58 1.31
492 493 4.214758 TGTCTCGCTAATAGCACGCTATAA 59.785 41.667 13.15 0.00 42.58 0.98
493 494 4.554200 GTCTCGCTAATAGCACGCTATAAC 59.446 45.833 13.15 4.36 42.58 1.89
494 495 4.214758 TCTCGCTAATAGCACGCTATAACA 59.785 41.667 13.15 0.87 42.58 2.41
495 496 4.224433 TCGCTAATAGCACGCTATAACAC 58.776 43.478 13.15 2.48 42.58 3.32
496 497 3.057739 CGCTAATAGCACGCTATAACACG 59.942 47.826 13.15 9.75 42.58 4.49
497 498 4.224433 GCTAATAGCACGCTATAACACGA 58.776 43.478 11.80 0.00 41.89 4.35
498 499 4.857588 GCTAATAGCACGCTATAACACGAT 59.142 41.667 11.80 0.00 41.89 3.73
499 500 6.025896 GCTAATAGCACGCTATAACACGATA 58.974 40.000 11.80 0.00 41.89 2.92
500 501 6.691818 GCTAATAGCACGCTATAACACGATAT 59.308 38.462 11.80 0.00 41.89 1.63
501 502 7.854422 GCTAATAGCACGCTATAACACGATATA 59.146 37.037 11.80 0.00 41.89 0.86
502 503 9.371333 CTAATAGCACGCTATAACACGATATAG 57.629 37.037 11.80 3.74 38.20 1.31
527 528 9.442047 AGCATACTAATAGCATATTTTGAGGTC 57.558 33.333 0.00 0.00 0.00 3.85
528 529 9.442047 GCATACTAATAGCATATTTTGAGGTCT 57.558 33.333 0.00 0.00 0.00 3.85
530 531 7.736447 ACTAATAGCATATTTTGAGGTCTGC 57.264 36.000 0.00 0.00 0.00 4.26
531 532 7.282585 ACTAATAGCATATTTTGAGGTCTGCA 58.717 34.615 0.00 0.00 32.18 4.41
532 533 6.382869 AATAGCATATTTTGAGGTCTGCAC 57.617 37.500 0.00 0.00 32.18 4.57
533 534 3.960571 AGCATATTTTGAGGTCTGCACT 58.039 40.909 0.00 0.00 32.18 4.40
534 535 5.102953 AGCATATTTTGAGGTCTGCACTA 57.897 39.130 0.00 0.00 32.18 2.74
535 536 5.688807 AGCATATTTTGAGGTCTGCACTAT 58.311 37.500 0.00 0.00 32.18 2.12
536 537 6.125029 AGCATATTTTGAGGTCTGCACTATT 58.875 36.000 0.00 0.00 32.18 1.73
537 538 6.604795 AGCATATTTTGAGGTCTGCACTATTT 59.395 34.615 0.00 0.00 32.18 1.40
538 539 7.123247 AGCATATTTTGAGGTCTGCACTATTTT 59.877 33.333 0.00 0.00 32.18 1.82
539 540 7.221452 GCATATTTTGAGGTCTGCACTATTTTG 59.779 37.037 0.00 0.00 0.00 2.44
540 541 4.503741 TTTGAGGTCTGCACTATTTTGC 57.496 40.909 0.00 0.00 43.31 3.68
541 542 3.423539 TGAGGTCTGCACTATTTTGCT 57.576 42.857 0.00 0.00 43.41 3.91
542 543 3.076621 TGAGGTCTGCACTATTTTGCTG 58.923 45.455 0.00 0.00 43.41 4.41
543 544 3.077359 GAGGTCTGCACTATTTTGCTGT 58.923 45.455 0.00 0.00 43.41 4.40
544 545 4.253685 GAGGTCTGCACTATTTTGCTGTA 58.746 43.478 0.00 0.00 43.41 2.74
545 546 4.256920 AGGTCTGCACTATTTTGCTGTAG 58.743 43.478 0.00 0.00 43.41 2.74
546 547 3.181506 GGTCTGCACTATTTTGCTGTAGC 60.182 47.826 0.00 0.00 43.41 3.58
594 595 3.507411 ACAAGTCCTTCTACCAGCAGTA 58.493 45.455 0.00 0.00 0.00 2.74
605 607 0.737715 CCAGCAGTAGAGCAACGACC 60.738 60.000 0.00 0.00 36.85 4.79
614 616 1.001974 AGAGCAACGACCAGCATAACA 59.998 47.619 0.00 0.00 0.00 2.41
660 662 4.925646 GGCATTTGAGTTGACTTGATTTCC 59.074 41.667 0.00 0.00 0.00 3.13
662 664 4.829064 TTTGAGTTGACTTGATTTCCCG 57.171 40.909 0.00 0.00 0.00 5.14
697 707 1.264288 CAACTTGCAGAACGTTCCTCC 59.736 52.381 24.22 13.15 0.00 4.30
730 740 1.516386 ATACGCGGAGTTGCTGTCG 60.516 57.895 12.47 0.00 0.00 4.35
731 741 2.209064 ATACGCGGAGTTGCTGTCGT 62.209 55.000 12.47 0.00 38.51 4.34
732 742 2.791396 TACGCGGAGTTGCTGTCGTC 62.791 60.000 12.47 0.00 37.07 4.20
791 801 2.983592 CTTCAAAAGGCCCGCGGT 60.984 61.111 26.12 1.61 0.00 5.68
838 849 7.886405 AAACATAAGAAAGAAGACGTAGACC 57.114 36.000 0.00 0.00 0.00 3.85
874 885 7.067494 GGTTAGGAAACTCTGGTATAACTACGA 59.933 40.741 0.00 0.00 43.67 3.43
898 909 2.414691 GCAAGGAATTCTTTCGACCAGC 60.415 50.000 5.23 0.00 32.41 4.85
1116 1130 3.880490 AGAGTACCAGAAGATAGCTCACG 59.120 47.826 0.00 0.00 0.00 4.35
1160 1174 4.872691 CACCATATTCTTCGTTCTGCTTCT 59.127 41.667 0.00 0.00 0.00 2.85
1162 1176 4.509600 CCATATTCTTCGTTCTGCTTCTCC 59.490 45.833 0.00 0.00 0.00 3.71
1166 1180 0.038526 TTCGTTCTGCTTCTCCGTCC 60.039 55.000 0.00 0.00 0.00 4.79
1190 1204 0.036388 AGGGTGTAGACATGCCGTTG 60.036 55.000 0.00 0.00 0.00 4.10
1200 1214 0.041576 CATGCCGTTGCGATCATGAG 60.042 55.000 0.09 0.00 41.78 2.90
1254 1275 1.541147 CTTTCGAATGGCCTGCAGAAA 59.459 47.619 17.39 10.21 0.00 2.52
1333 1354 3.455327 GTTTCCAAGCTCGAGGGTATAC 58.545 50.000 15.58 0.00 0.00 1.47
1360 1386 4.462132 TCTCTGACTCTCTTCATTCCTGTG 59.538 45.833 0.00 0.00 0.00 3.66
1370 1396 3.998913 TCATTCCTGTGTATCCTGCAA 57.001 42.857 0.00 0.00 0.00 4.08
1373 1405 4.469586 TCATTCCTGTGTATCCTGCAACTA 59.530 41.667 0.00 0.00 0.00 2.24
1527 1560 3.248171 GCGTCCATCGTCAGCGTC 61.248 66.667 0.00 0.00 42.13 5.19
1892 1961 2.793933 CGTATGTACCTGGACTCGTTG 58.206 52.381 0.00 0.00 0.00 4.10
1903 1972 1.060122 GGACTCGTTGCGATTTTACCG 59.940 52.381 0.00 0.00 34.61 4.02
1905 1974 2.916716 GACTCGTTGCGATTTTACCGTA 59.083 45.455 0.00 0.00 34.61 4.02
1910 1979 3.676540 GTTGCGATTTTACCGTATGTGG 58.323 45.455 0.00 0.00 0.00 4.17
1911 1980 2.281517 TGCGATTTTACCGTATGTGGG 58.718 47.619 0.00 0.00 0.00 4.61
1912 1981 2.282407 GCGATTTTACCGTATGTGGGT 58.718 47.619 0.00 0.00 41.62 4.51
1913 1982 2.031191 GCGATTTTACCGTATGTGGGTG 59.969 50.000 0.00 0.00 38.50 4.61
1918 1987 1.192803 TACCGTATGTGGGTGTGCCA 61.193 55.000 0.00 0.00 38.50 4.92
1948 2017 7.703621 TGTTTAGTACCGTAGTTCATATGCTTC 59.296 37.037 0.00 0.00 0.00 3.86
1954 2023 3.177838 CGTAGTTCATATGCTTCGTGTCG 59.822 47.826 0.00 0.00 0.00 4.35
1956 2025 1.004927 GTTCATATGCTTCGTGTCGCC 60.005 52.381 0.00 0.00 0.00 5.54
1971 2048 0.743688 TCGCCATTGTTGCAGTTTGT 59.256 45.000 0.00 0.00 0.00 2.83
1975 2052 3.682921 GCCATTGTTGCAGTTTGTTTTG 58.317 40.909 0.00 0.00 0.00 2.44
1982 2059 5.473931 TGTTGCAGTTTGTTTTGTGTACAT 58.526 33.333 0.00 0.00 0.00 2.29
2007 2084 5.163447 CGATGATTCCCTGGTTACTTCAGTA 60.163 44.000 0.00 0.00 0.00 2.74
2008 2085 5.416271 TGATTCCCTGGTTACTTCAGTAC 57.584 43.478 0.00 0.00 0.00 2.73
2017 2097 3.486542 GGTTACTTCAGTACTACTCGGCG 60.487 52.174 0.00 0.00 0.00 6.46
2074 2161 9.586435 GTGAAAACCCAGAAAAAGATTATATGG 57.414 33.333 0.00 0.00 0.00 2.74
2189 2279 9.274206 GGTGGAGACTTTAATATTATCAGGAAC 57.726 37.037 0.00 0.00 0.00 3.62
2218 2308 2.969443 AAAAACAACTCGATGAGCCG 57.031 45.000 0.00 0.00 32.04 5.52
2226 2316 4.051237 CAACTCGATGAGCCGAATCATTA 58.949 43.478 4.17 0.00 40.02 1.90
2227 2317 3.643763 ACTCGATGAGCCGAATCATTAC 58.356 45.455 4.17 0.00 40.02 1.89
2242 2342 7.413988 CCGAATCATTACAGCTTTGTGTCATTA 60.414 37.037 0.00 0.00 31.46 1.90
2243 2343 7.962373 CGAATCATTACAGCTTTGTGTCATTAA 59.038 33.333 0.00 0.00 31.46 1.40
2311 2411 5.104109 ACCTAGGCCAATAATTTAGCTGACA 60.104 40.000 9.30 0.00 0.00 3.58
2326 2426 5.424121 AGCTGACACAACTTATGAACAAC 57.576 39.130 0.00 0.00 0.00 3.32
2328 2428 5.237344 AGCTGACACAACTTATGAACAACTC 59.763 40.000 0.00 0.00 0.00 3.01
2329 2429 5.007626 GCTGACACAACTTATGAACAACTCA 59.992 40.000 0.00 0.00 38.81 3.41
2331 2431 7.384439 TGACACAACTTATGAACAACTCAAA 57.616 32.000 0.00 0.00 37.67 2.69
2359 2464 1.004758 TCCTGAATGGGAGGAGGGG 59.995 63.158 0.00 0.00 34.49 4.79
2371 2476 2.426414 GGAGGAGGGGTATCATCTGTCA 60.426 54.545 0.00 0.00 30.85 3.58
2377 2482 4.219115 AGGGGTATCATCTGTCAGTACTG 58.781 47.826 17.17 17.17 0.00 2.74
2419 2525 2.311841 TCTGACCACACTCCTCTATCCA 59.688 50.000 0.00 0.00 0.00 3.41
2435 2541 2.859165 TCCATTGACACTGGAGAACC 57.141 50.000 10.34 0.00 37.87 3.62
2450 2556 3.833070 GGAGAACCTCCTAGTGAAGTTCA 59.167 47.826 17.64 0.08 46.41 3.18
2483 2589 0.036577 CTTCAGTGCTCACAGAGGGG 60.037 60.000 2.63 0.00 0.00 4.79
2533 2639 3.137544 AGTGAAACCTACCATGGTGACAA 59.862 43.478 28.17 6.24 41.44 3.18
2601 2707 4.059773 AGAGGGTGGGATAAAAATGCAA 57.940 40.909 0.00 0.00 0.00 4.08
2686 2792 0.535335 GACGTCATGGGGCTTACTGA 59.465 55.000 11.55 0.00 0.00 3.41
2722 2830 6.357367 AGGAGCAAAAAGACTTAAGAGAACA 58.643 36.000 10.09 0.00 0.00 3.18
2737 2845 5.397142 AGAGAACAATTGGCCAGAATTTC 57.603 39.130 5.11 8.28 0.00 2.17
2744 2852 5.528320 ACAATTGGCCAGAATTTCAAAACAG 59.472 36.000 5.11 0.00 0.00 3.16
2894 3003 4.547671 TGAAGGAACTATCGAGGGAGAAT 58.452 43.478 0.00 0.00 38.49 2.40
2974 3084 8.604640 ATTGCTCACAAATATCTCTACATCTG 57.395 34.615 0.00 0.00 39.77 2.90
2977 3087 6.145858 GCTCACAAATATCTCTACATCTGCAG 59.854 42.308 7.63 7.63 0.00 4.41
2993 3103 6.318144 ACATCTGCAGGACATTTCTCAAATAG 59.682 38.462 15.13 0.00 0.00 1.73
3153 3263 5.751586 TGGGAGTTATTTAAGTGGGATGTC 58.248 41.667 0.00 0.00 0.00 3.06
3238 3348 3.019799 TCACCCTTGTGCCAAAAACTA 57.980 42.857 0.00 0.00 42.46 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.406595 CTTCCCTCACCCCATCGCC 62.407 68.421 0.00 0.00 0.00 5.54
17 18 2.190578 CTTCCCTCACCCCATCGC 59.809 66.667 0.00 0.00 0.00 4.58
18 19 1.689233 TCCTTCCCTCACCCCATCG 60.689 63.158 0.00 0.00 0.00 3.84
19 20 1.348775 CCTCCTTCCCTCACCCCATC 61.349 65.000 0.00 0.00 0.00 3.51
20 21 1.308216 CCTCCTTCCCTCACCCCAT 60.308 63.158 0.00 0.00 0.00 4.00
21 22 2.124996 CCTCCTTCCCTCACCCCA 59.875 66.667 0.00 0.00 0.00 4.96
22 23 1.690985 CTCCTCCTTCCCTCACCCC 60.691 68.421 0.00 0.00 0.00 4.95
23 24 0.978667 GACTCCTCCTTCCCTCACCC 60.979 65.000 0.00 0.00 0.00 4.61
24 25 1.324005 CGACTCCTCCTTCCCTCACC 61.324 65.000 0.00 0.00 0.00 4.02
25 26 1.324005 CCGACTCCTCCTTCCCTCAC 61.324 65.000 0.00 0.00 0.00 3.51
26 27 1.000486 CCGACTCCTCCTTCCCTCA 60.000 63.158 0.00 0.00 0.00 3.86
27 28 2.428085 GCCGACTCCTCCTTCCCTC 61.428 68.421 0.00 0.00 0.00 4.30
28 29 2.364448 GCCGACTCCTCCTTCCCT 60.364 66.667 0.00 0.00 0.00 4.20
29 30 2.683933 TGCCGACTCCTCCTTCCC 60.684 66.667 0.00 0.00 0.00 3.97
30 31 2.579738 GTGCCGACTCCTCCTTCC 59.420 66.667 0.00 0.00 0.00 3.46
31 32 2.579738 GGTGCCGACTCCTCCTTC 59.420 66.667 0.00 0.00 0.00 3.46
32 33 3.382832 CGGTGCCGACTCCTCCTT 61.383 66.667 4.35 0.00 42.83 3.36
33 34 4.361971 TCGGTGCCGACTCCTCCT 62.362 66.667 9.48 0.00 44.01 3.69
49 50 4.832608 CCAACCCTAGCCGCCGTC 62.833 72.222 0.00 0.00 0.00 4.79
51 52 4.530857 CTCCAACCCTAGCCGCCG 62.531 72.222 0.00 0.00 0.00 6.46
52 53 2.666098 TTCTCCAACCCTAGCCGCC 61.666 63.158 0.00 0.00 0.00 6.13
53 54 1.449778 GTTCTCCAACCCTAGCCGC 60.450 63.158 0.00 0.00 0.00 6.53
54 55 0.108138 CAGTTCTCCAACCCTAGCCG 60.108 60.000 0.00 0.00 32.22 5.52
55 56 0.984995 ACAGTTCTCCAACCCTAGCC 59.015 55.000 0.00 0.00 32.22 3.93
56 57 1.066071 GGACAGTTCTCCAACCCTAGC 60.066 57.143 0.00 0.00 32.22 3.42
57 58 1.204941 CGGACAGTTCTCCAACCCTAG 59.795 57.143 0.00 0.00 32.22 3.02
58 59 1.203087 TCGGACAGTTCTCCAACCCTA 60.203 52.381 0.00 0.00 32.22 3.53
59 60 0.471211 TCGGACAGTTCTCCAACCCT 60.471 55.000 0.00 0.00 32.22 4.34
60 61 0.037232 CTCGGACAGTTCTCCAACCC 60.037 60.000 0.00 0.00 32.22 4.11
61 62 0.680061 ACTCGGACAGTTCTCCAACC 59.320 55.000 0.00 0.00 32.22 3.77
62 63 1.666311 CGACTCGGACAGTTCTCCAAC 60.666 57.143 0.00 0.00 34.41 3.77
63 64 0.596577 CGACTCGGACAGTTCTCCAA 59.403 55.000 0.00 0.00 34.41 3.53
64 65 1.863662 GCGACTCGGACAGTTCTCCA 61.864 60.000 0.00 0.00 34.41 3.86
65 66 1.153997 GCGACTCGGACAGTTCTCC 60.154 63.158 0.00 0.00 34.41 3.71
66 67 0.455295 CAGCGACTCGGACAGTTCTC 60.455 60.000 0.00 0.00 34.41 2.87
67 68 0.889638 TCAGCGACTCGGACAGTTCT 60.890 55.000 0.00 0.00 34.41 3.01
68 69 0.455295 CTCAGCGACTCGGACAGTTC 60.455 60.000 0.00 0.00 34.41 3.01
69 70 1.581954 CTCAGCGACTCGGACAGTT 59.418 57.895 0.00 0.00 34.41 3.16
70 71 2.983930 GCTCAGCGACTCGGACAGT 61.984 63.158 0.00 0.00 38.45 3.55
71 72 2.202544 GCTCAGCGACTCGGACAG 60.203 66.667 0.00 0.00 0.00 3.51
72 73 2.982744 CTGCTCAGCGACTCGGACA 61.983 63.158 0.00 0.00 0.00 4.02
73 74 2.202544 CTGCTCAGCGACTCGGAC 60.203 66.667 0.00 0.00 0.00 4.79
74 75 3.443925 CCTGCTCAGCGACTCGGA 61.444 66.667 0.00 0.00 0.00 4.55
75 76 4.504916 CCCTGCTCAGCGACTCGG 62.505 72.222 0.00 0.00 0.00 4.63
76 77 4.504916 CCCCTGCTCAGCGACTCG 62.505 72.222 0.00 0.00 0.00 4.18
77 78 4.828925 GCCCCTGCTCAGCGACTC 62.829 72.222 0.00 0.00 33.53 3.36
99 100 3.966543 AAAGGCACCTGACCCCCG 61.967 66.667 0.00 0.00 0.00 5.73
100 101 2.283173 CAAAGGCACCTGACCCCC 60.283 66.667 0.00 0.00 0.00 5.40
101 102 1.303643 CTCAAAGGCACCTGACCCC 60.304 63.158 0.00 0.00 0.00 4.95
102 103 0.322008 CTCTCAAAGGCACCTGACCC 60.322 60.000 0.00 0.00 0.00 4.46
103 104 0.398318 ACTCTCAAAGGCACCTGACC 59.602 55.000 0.00 0.00 0.00 4.02
104 105 1.517242 CACTCTCAAAGGCACCTGAC 58.483 55.000 0.00 0.00 0.00 3.51
105 106 0.250467 GCACTCTCAAAGGCACCTGA 60.250 55.000 0.00 0.00 0.00 3.86
106 107 0.250640 AGCACTCTCAAAGGCACCTG 60.251 55.000 0.00 0.00 0.00 4.00
107 108 0.475906 AAGCACTCTCAAAGGCACCT 59.524 50.000 0.00 0.00 0.00 4.00
108 109 1.322442 AAAGCACTCTCAAAGGCACC 58.678 50.000 0.00 0.00 0.00 5.01
109 110 2.358898 TCAAAAGCACTCTCAAAGGCAC 59.641 45.455 0.00 0.00 0.00 5.01
110 111 2.653726 TCAAAAGCACTCTCAAAGGCA 58.346 42.857 0.00 0.00 0.00 4.75
111 112 3.930634 ATCAAAAGCACTCTCAAAGGC 57.069 42.857 0.00 0.00 0.00 4.35
112 113 4.980434 CACAATCAAAAGCACTCTCAAAGG 59.020 41.667 0.00 0.00 0.00 3.11
113 114 4.443394 GCACAATCAAAAGCACTCTCAAAG 59.557 41.667 0.00 0.00 0.00 2.77
114 115 4.098349 AGCACAATCAAAAGCACTCTCAAA 59.902 37.500 0.00 0.00 0.00 2.69
115 116 3.633525 AGCACAATCAAAAGCACTCTCAA 59.366 39.130 0.00 0.00 0.00 3.02
116 117 3.216800 AGCACAATCAAAAGCACTCTCA 58.783 40.909 0.00 0.00 0.00 3.27
117 118 3.911661 AGCACAATCAAAAGCACTCTC 57.088 42.857 0.00 0.00 0.00 3.20
118 119 5.772825 TTTAGCACAATCAAAAGCACTCT 57.227 34.783 0.00 0.00 0.00 3.24
119 120 6.826893 TTTTTAGCACAATCAAAAGCACTC 57.173 33.333 0.00 0.00 0.00 3.51
139 140 8.466798 CGTCCAAAACCATATTCTATCCTTTTT 58.533 33.333 0.00 0.00 0.00 1.94
140 141 7.832187 TCGTCCAAAACCATATTCTATCCTTTT 59.168 33.333 0.00 0.00 0.00 2.27
141 142 7.343357 TCGTCCAAAACCATATTCTATCCTTT 58.657 34.615 0.00 0.00 0.00 3.11
142 143 6.895782 TCGTCCAAAACCATATTCTATCCTT 58.104 36.000 0.00 0.00 0.00 3.36
143 144 6.494666 TCGTCCAAAACCATATTCTATCCT 57.505 37.500 0.00 0.00 0.00 3.24
144 145 6.990349 TCTTCGTCCAAAACCATATTCTATCC 59.010 38.462 0.00 0.00 0.00 2.59
145 146 8.608844 ATCTTCGTCCAAAACCATATTCTATC 57.391 34.615 0.00 0.00 0.00 2.08
146 147 7.385205 CGATCTTCGTCCAAAACCATATTCTAT 59.615 37.037 0.00 0.00 34.72 1.98
147 148 6.700081 CGATCTTCGTCCAAAACCATATTCTA 59.300 38.462 0.00 0.00 34.72 2.10
148 149 5.523916 CGATCTTCGTCCAAAACCATATTCT 59.476 40.000 0.00 0.00 34.72 2.40
149 150 5.522460 TCGATCTTCGTCCAAAACCATATTC 59.478 40.000 0.00 0.00 41.35 1.75
150 151 5.424757 TCGATCTTCGTCCAAAACCATATT 58.575 37.500 0.00 0.00 41.35 1.28
151 152 5.018539 TCGATCTTCGTCCAAAACCATAT 57.981 39.130 0.00 0.00 41.35 1.78
152 153 4.459390 TCGATCTTCGTCCAAAACCATA 57.541 40.909 0.00 0.00 41.35 2.74
153 154 3.328382 TCGATCTTCGTCCAAAACCAT 57.672 42.857 0.00 0.00 41.35 3.55
154 155 2.823924 TCGATCTTCGTCCAAAACCA 57.176 45.000 0.00 0.00 41.35 3.67
155 156 3.323243 TCTTCGATCTTCGTCCAAAACC 58.677 45.455 0.00 0.00 41.35 3.27
156 157 4.985044 TTCTTCGATCTTCGTCCAAAAC 57.015 40.909 0.00 0.00 41.35 2.43
157 158 5.994887 TTTTCTTCGATCTTCGTCCAAAA 57.005 34.783 0.00 0.00 41.35 2.44
158 159 5.616866 GCATTTTCTTCGATCTTCGTCCAAA 60.617 40.000 0.00 0.00 41.35 3.28
159 160 4.142902 GCATTTTCTTCGATCTTCGTCCAA 60.143 41.667 0.00 0.00 41.35 3.53
160 161 3.370978 GCATTTTCTTCGATCTTCGTCCA 59.629 43.478 0.00 0.00 41.35 4.02
161 162 3.242446 GGCATTTTCTTCGATCTTCGTCC 60.242 47.826 0.00 0.00 41.35 4.79
162 163 3.619038 AGGCATTTTCTTCGATCTTCGTC 59.381 43.478 0.00 0.00 41.35 4.20
163 164 3.600388 AGGCATTTTCTTCGATCTTCGT 58.400 40.909 0.00 0.00 41.35 3.85
164 165 4.494855 GGAAGGCATTTTCTTCGATCTTCG 60.495 45.833 0.00 0.00 40.95 3.79
165 166 4.396166 TGGAAGGCATTTTCTTCGATCTTC 59.604 41.667 0.00 0.00 40.95 2.87
166 167 4.335416 TGGAAGGCATTTTCTTCGATCTT 58.665 39.130 0.00 0.00 40.95 2.40
167 168 3.955471 TGGAAGGCATTTTCTTCGATCT 58.045 40.909 0.00 0.00 40.95 2.75
168 169 4.701956 TTGGAAGGCATTTTCTTCGATC 57.298 40.909 0.00 0.00 40.95 3.69
169 170 4.280677 TGTTTGGAAGGCATTTTCTTCGAT 59.719 37.500 0.00 0.00 40.95 3.59
170 171 3.634448 TGTTTGGAAGGCATTTTCTTCGA 59.366 39.130 0.00 0.00 40.95 3.71
171 172 3.735746 GTGTTTGGAAGGCATTTTCTTCG 59.264 43.478 0.00 0.00 40.95 3.79
172 173 4.948847 AGTGTTTGGAAGGCATTTTCTTC 58.051 39.130 0.00 0.00 39.73 2.87
173 174 4.405358 TGAGTGTTTGGAAGGCATTTTCTT 59.595 37.500 0.00 0.00 0.00 2.52
174 175 3.960102 TGAGTGTTTGGAAGGCATTTTCT 59.040 39.130 0.00 0.00 0.00 2.52
175 176 4.320608 TGAGTGTTTGGAAGGCATTTTC 57.679 40.909 0.00 0.00 0.00 2.29
176 177 4.751767 TTGAGTGTTTGGAAGGCATTTT 57.248 36.364 0.00 0.00 0.00 1.82
177 178 4.162131 ACTTTGAGTGTTTGGAAGGCATTT 59.838 37.500 0.00 0.00 0.00 2.32
178 179 3.706086 ACTTTGAGTGTTTGGAAGGCATT 59.294 39.130 0.00 0.00 0.00 3.56
179 180 3.068590 CACTTTGAGTGTTTGGAAGGCAT 59.931 43.478 0.00 0.00 41.19 4.40
180 181 2.426738 CACTTTGAGTGTTTGGAAGGCA 59.573 45.455 0.00 0.00 41.19 4.75
181 182 3.084070 CACTTTGAGTGTTTGGAAGGC 57.916 47.619 0.00 0.00 41.19 4.35
192 193 1.765314 AGACTGAGTGGCACTTTGAGT 59.235 47.619 22.98 21.82 0.00 3.41
193 194 2.411904 GAGACTGAGTGGCACTTTGAG 58.588 52.381 22.98 18.93 0.00 3.02
194 195 1.070758 GGAGACTGAGTGGCACTTTGA 59.929 52.381 22.98 8.13 0.00 2.69
195 196 1.517242 GGAGACTGAGTGGCACTTTG 58.483 55.000 22.98 18.73 0.00 2.77
196 197 0.398318 GGGAGACTGAGTGGCACTTT 59.602 55.000 22.98 9.36 0.00 2.66
197 198 0.472734 AGGGAGACTGAGTGGCACTT 60.473 55.000 22.98 5.69 0.00 3.16
198 199 1.157276 AGGGAGACTGAGTGGCACT 59.843 57.895 22.26 22.26 0.00 4.40
199 200 3.798758 AGGGAGACTGAGTGGCAC 58.201 61.111 10.29 10.29 0.00 5.01
222 223 2.435372 TGACTGAGTGGCACCTTTTT 57.565 45.000 15.27 0.00 0.00 1.94
223 224 2.158623 TGATGACTGAGTGGCACCTTTT 60.159 45.455 15.27 0.00 35.90 2.27
224 225 1.421268 TGATGACTGAGTGGCACCTTT 59.579 47.619 15.27 0.00 35.90 3.11
225 226 1.059098 TGATGACTGAGTGGCACCTT 58.941 50.000 15.27 0.00 35.90 3.50
226 227 1.059098 TTGATGACTGAGTGGCACCT 58.941 50.000 15.27 1.14 35.90 4.00
227 228 1.537202 GTTTGATGACTGAGTGGCACC 59.463 52.381 15.27 6.59 35.90 5.01
228 229 2.031682 GTGTTTGATGACTGAGTGGCAC 60.032 50.000 10.29 10.29 35.90 5.01
229 230 2.158769 AGTGTTTGATGACTGAGTGGCA 60.159 45.455 0.00 0.00 38.56 4.92
230 231 2.498167 AGTGTTTGATGACTGAGTGGC 58.502 47.619 0.00 0.00 0.00 5.01
231 232 4.633126 CCATAGTGTTTGATGACTGAGTGG 59.367 45.833 0.00 0.00 0.00 4.00
232 233 4.093998 GCCATAGTGTTTGATGACTGAGTG 59.906 45.833 0.00 0.00 0.00 3.51
233 234 4.256920 GCCATAGTGTTTGATGACTGAGT 58.743 43.478 0.00 0.00 0.00 3.41
234 235 4.256110 TGCCATAGTGTTTGATGACTGAG 58.744 43.478 0.00 0.00 0.00 3.35
235 236 4.284829 TGCCATAGTGTTTGATGACTGA 57.715 40.909 0.00 0.00 0.00 3.41
236 237 4.637091 TGATGCCATAGTGTTTGATGACTG 59.363 41.667 0.00 0.00 0.00 3.51
237 238 4.847198 TGATGCCATAGTGTTTGATGACT 58.153 39.130 0.00 0.00 0.00 3.41
238 239 5.297527 TGATGATGCCATAGTGTTTGATGAC 59.702 40.000 0.00 0.00 32.09 3.06
239 240 5.438833 TGATGATGCCATAGTGTTTGATGA 58.561 37.500 0.00 0.00 32.09 2.92
240 241 5.758924 CTGATGATGCCATAGTGTTTGATG 58.241 41.667 0.00 0.00 32.09 3.07
241 242 4.277672 GCTGATGATGCCATAGTGTTTGAT 59.722 41.667 0.00 0.00 32.09 2.57
242 243 3.628942 GCTGATGATGCCATAGTGTTTGA 59.371 43.478 0.00 0.00 32.09 2.69
243 244 3.961182 GCTGATGATGCCATAGTGTTTG 58.039 45.455 0.00 0.00 32.09 2.93
254 255 2.022195 ACAGTGAATGGCTGATGATGC 58.978 47.619 0.00 0.00 37.40 3.91
255 256 3.965292 GACAGTGAATGGCTGATGATG 57.035 47.619 0.00 0.00 37.40 3.07
263 264 1.669779 GCAGATCAGACAGTGAATGGC 59.330 52.381 0.00 0.00 39.19 4.40
264 265 3.263489 AGCAGATCAGACAGTGAATGG 57.737 47.619 0.00 0.00 39.19 3.16
265 266 8.429493 TTTATTAGCAGATCAGACAGTGAATG 57.571 34.615 0.00 0.00 39.19 2.67
266 267 9.624373 ATTTTATTAGCAGATCAGACAGTGAAT 57.376 29.630 0.00 0.00 39.19 2.57
267 268 8.886719 CATTTTATTAGCAGATCAGACAGTGAA 58.113 33.333 0.00 0.00 39.19 3.18
268 269 8.260114 TCATTTTATTAGCAGATCAGACAGTGA 58.740 33.333 0.00 0.00 40.38 3.41
269 270 8.429493 TCATTTTATTAGCAGATCAGACAGTG 57.571 34.615 0.00 0.00 0.00 3.66
287 288 8.341903 CGTGCAACACCATATTCTATCATTTTA 58.658 33.333 0.00 0.00 35.74 1.52
288 289 7.195646 CGTGCAACACCATATTCTATCATTTT 58.804 34.615 0.00 0.00 35.74 1.82
289 290 6.238731 CCGTGCAACACCATATTCTATCATTT 60.239 38.462 0.00 0.00 35.74 2.32
290 291 5.239306 CCGTGCAACACCATATTCTATCATT 59.761 40.000 0.00 0.00 35.74 2.57
291 292 4.756642 CCGTGCAACACCATATTCTATCAT 59.243 41.667 0.00 0.00 35.74 2.45
292 293 4.126437 CCGTGCAACACCATATTCTATCA 58.874 43.478 0.00 0.00 35.74 2.15
293 294 4.377021 TCCGTGCAACACCATATTCTATC 58.623 43.478 0.00 0.00 35.74 2.08
294 295 4.100963 TCTCCGTGCAACACCATATTCTAT 59.899 41.667 0.00 0.00 35.74 1.98
295 296 3.449377 TCTCCGTGCAACACCATATTCTA 59.551 43.478 0.00 0.00 35.74 2.10
296 297 2.236146 TCTCCGTGCAACACCATATTCT 59.764 45.455 0.00 0.00 35.74 2.40
297 298 2.627945 TCTCCGTGCAACACCATATTC 58.372 47.619 0.00 0.00 35.74 1.75
298 299 2.779755 TCTCCGTGCAACACCATATT 57.220 45.000 0.00 0.00 35.74 1.28
299 300 2.803133 CGATCTCCGTGCAACACCATAT 60.803 50.000 0.00 0.00 35.74 1.78
300 301 1.470805 CGATCTCCGTGCAACACCATA 60.471 52.381 0.00 0.00 35.74 2.74
301 302 0.740868 CGATCTCCGTGCAACACCAT 60.741 55.000 0.00 0.00 35.74 3.55
302 303 1.374125 CGATCTCCGTGCAACACCA 60.374 57.895 0.00 0.00 35.74 4.17
303 304 0.669318 TTCGATCTCCGTGCAACACC 60.669 55.000 0.00 0.00 39.75 4.16
304 305 0.716108 CTTCGATCTCCGTGCAACAC 59.284 55.000 0.00 0.00 39.75 3.32
305 306 0.601057 TCTTCGATCTCCGTGCAACA 59.399 50.000 0.00 0.00 39.75 3.33
306 307 1.710013 TTCTTCGATCTCCGTGCAAC 58.290 50.000 0.00 0.00 39.75 4.17
307 308 2.448926 TTTCTTCGATCTCCGTGCAA 57.551 45.000 0.00 0.00 39.75 4.08
308 309 2.448926 TTTTCTTCGATCTCCGTGCA 57.551 45.000 0.00 0.00 39.75 4.57
309 310 2.537730 GCATTTTCTTCGATCTCCGTGC 60.538 50.000 0.00 0.00 39.75 5.34
310 311 2.030946 GGCATTTTCTTCGATCTCCGTG 59.969 50.000 0.00 0.00 39.75 4.94
311 312 2.093447 AGGCATTTTCTTCGATCTCCGT 60.093 45.455 0.00 0.00 39.75 4.69
312 313 2.541762 GAGGCATTTTCTTCGATCTCCG 59.458 50.000 0.00 0.00 40.25 4.63
313 314 2.875317 GGAGGCATTTTCTTCGATCTCC 59.125 50.000 0.00 0.00 33.76 3.71
314 315 2.875317 GGGAGGCATTTTCTTCGATCTC 59.125 50.000 0.00 0.00 0.00 2.75
315 316 2.239654 TGGGAGGCATTTTCTTCGATCT 59.760 45.455 0.00 0.00 0.00 2.75
316 317 2.643551 TGGGAGGCATTTTCTTCGATC 58.356 47.619 0.00 0.00 0.00 3.69
317 318 2.806945 TGGGAGGCATTTTCTTCGAT 57.193 45.000 0.00 0.00 0.00 3.59
318 319 2.556622 GTTTGGGAGGCATTTTCTTCGA 59.443 45.455 0.00 0.00 0.00 3.71
319 320 2.295909 TGTTTGGGAGGCATTTTCTTCG 59.704 45.455 0.00 0.00 0.00 3.79
320 321 3.321968 AGTGTTTGGGAGGCATTTTCTTC 59.678 43.478 0.00 0.00 0.00 2.87
321 322 3.308401 AGTGTTTGGGAGGCATTTTCTT 58.692 40.909 0.00 0.00 0.00 2.52
322 323 2.893489 GAGTGTTTGGGAGGCATTTTCT 59.107 45.455 0.00 0.00 0.00 2.52
323 324 2.627699 TGAGTGTTTGGGAGGCATTTTC 59.372 45.455 0.00 0.00 0.00 2.29
324 325 2.676748 TGAGTGTTTGGGAGGCATTTT 58.323 42.857 0.00 0.00 0.00 1.82
325 326 2.380064 TGAGTGTTTGGGAGGCATTT 57.620 45.000 0.00 0.00 0.00 2.32
326 327 2.380064 TTGAGTGTTTGGGAGGCATT 57.620 45.000 0.00 0.00 0.00 3.56
327 328 2.380064 TTTGAGTGTTTGGGAGGCAT 57.620 45.000 0.00 0.00 0.00 4.40
328 329 2.151502 TTTTGAGTGTTTGGGAGGCA 57.848 45.000 0.00 0.00 0.00 4.75
329 330 2.867647 GCATTTTGAGTGTTTGGGAGGC 60.868 50.000 0.00 0.00 0.00 4.70
330 331 2.289010 GGCATTTTGAGTGTTTGGGAGG 60.289 50.000 0.00 0.00 0.00 4.30
331 332 2.629617 AGGCATTTTGAGTGTTTGGGAG 59.370 45.455 0.00 0.00 0.00 4.30
332 333 2.676748 AGGCATTTTGAGTGTTTGGGA 58.323 42.857 0.00 0.00 0.00 4.37
333 334 3.320541 TGTAGGCATTTTGAGTGTTTGGG 59.679 43.478 0.00 0.00 0.00 4.12
334 335 4.582701 TGTAGGCATTTTGAGTGTTTGG 57.417 40.909 0.00 0.00 0.00 3.28
335 336 8.586570 TTTTATGTAGGCATTTTGAGTGTTTG 57.413 30.769 0.00 0.00 36.58 2.93
336 337 7.384932 GCTTTTATGTAGGCATTTTGAGTGTTT 59.615 33.333 0.00 0.00 36.58 2.83
337 338 6.868339 GCTTTTATGTAGGCATTTTGAGTGTT 59.132 34.615 0.00 0.00 36.58 3.32
338 339 6.209391 AGCTTTTATGTAGGCATTTTGAGTGT 59.791 34.615 0.00 0.00 36.58 3.55
339 340 6.624423 AGCTTTTATGTAGGCATTTTGAGTG 58.376 36.000 0.00 0.00 36.58 3.51
340 341 6.403636 CGAGCTTTTATGTAGGCATTTTGAGT 60.404 38.462 0.00 0.00 36.58 3.41
341 342 5.967674 CGAGCTTTTATGTAGGCATTTTGAG 59.032 40.000 0.00 0.00 36.58 3.02
342 343 5.645929 TCGAGCTTTTATGTAGGCATTTTGA 59.354 36.000 0.00 0.00 36.58 2.69
343 344 5.879237 TCGAGCTTTTATGTAGGCATTTTG 58.121 37.500 0.00 0.00 36.58 2.44
344 345 6.322491 GTTCGAGCTTTTATGTAGGCATTTT 58.678 36.000 0.00 0.00 36.58 1.82
345 346 5.163652 GGTTCGAGCTTTTATGTAGGCATTT 60.164 40.000 0.00 0.00 36.58 2.32
346 347 4.335594 GGTTCGAGCTTTTATGTAGGCATT 59.664 41.667 0.00 0.00 36.58 3.56
347 348 3.877508 GGTTCGAGCTTTTATGTAGGCAT 59.122 43.478 0.00 0.00 39.03 4.40
348 349 3.267483 GGTTCGAGCTTTTATGTAGGCA 58.733 45.455 0.00 0.00 0.00 4.75
349 350 2.284417 CGGTTCGAGCTTTTATGTAGGC 59.716 50.000 0.00 0.00 0.00 3.93
350 351 2.864343 CCGGTTCGAGCTTTTATGTAGG 59.136 50.000 0.00 0.00 0.00 3.18
351 352 2.864343 CCCGGTTCGAGCTTTTATGTAG 59.136 50.000 0.00 0.00 0.00 2.74
352 353 2.496871 TCCCGGTTCGAGCTTTTATGTA 59.503 45.455 0.00 0.00 0.00 2.29
353 354 1.276989 TCCCGGTTCGAGCTTTTATGT 59.723 47.619 0.00 0.00 0.00 2.29
354 355 2.018542 TCCCGGTTCGAGCTTTTATG 57.981 50.000 0.00 0.00 0.00 1.90
355 356 2.027469 AGTTCCCGGTTCGAGCTTTTAT 60.027 45.455 0.00 0.00 0.00 1.40
356 357 1.345415 AGTTCCCGGTTCGAGCTTTTA 59.655 47.619 0.00 0.00 0.00 1.52
357 358 0.108019 AGTTCCCGGTTCGAGCTTTT 59.892 50.000 0.00 0.00 0.00 2.27
358 359 0.320508 GAGTTCCCGGTTCGAGCTTT 60.321 55.000 0.00 0.00 0.00 3.51
359 360 1.186267 AGAGTTCCCGGTTCGAGCTT 61.186 55.000 0.00 0.00 0.00 3.74
360 361 0.323178 TAGAGTTCCCGGTTCGAGCT 60.323 55.000 0.00 0.00 0.00 4.09
361 362 0.529378 TTAGAGTTCCCGGTTCGAGC 59.471 55.000 0.00 0.00 0.00 5.03
362 363 2.810650 CATTAGAGTTCCCGGTTCGAG 58.189 52.381 0.00 0.00 0.00 4.04
363 364 1.134907 GCATTAGAGTTCCCGGTTCGA 60.135 52.381 0.00 0.00 0.00 3.71
364 365 1.287425 GCATTAGAGTTCCCGGTTCG 58.713 55.000 0.00 0.00 0.00 3.95
365 366 2.396590 TGCATTAGAGTTCCCGGTTC 57.603 50.000 0.00 0.00 0.00 3.62
366 367 2.871096 TTGCATTAGAGTTCCCGGTT 57.129 45.000 0.00 0.00 0.00 4.44
367 368 3.016736 CAATTGCATTAGAGTTCCCGGT 58.983 45.455 0.00 0.00 0.00 5.28
368 369 2.223572 GCAATTGCATTAGAGTTCCCGG 60.224 50.000 25.36 0.00 41.59 5.73
369 370 3.070429 GCAATTGCATTAGAGTTCCCG 57.930 47.619 25.36 0.00 41.59 5.14
388 389 4.631377 TCAGTAATCAGTACATGCTGTTGC 59.369 41.667 0.00 0.00 37.70 4.17
389 390 6.726258 TTCAGTAATCAGTACATGCTGTTG 57.274 37.500 0.00 0.00 37.70 3.33
390 391 7.744087 TTTTCAGTAATCAGTACATGCTGTT 57.256 32.000 0.00 0.00 37.70 3.16
391 392 7.744087 TTTTTCAGTAATCAGTACATGCTGT 57.256 32.000 0.00 0.00 37.70 4.40
412 413 6.092122 TCAATATGCTATAGCGCGCTATTTTT 59.908 34.615 46.76 32.41 45.83 1.94
413 414 5.580691 TCAATATGCTATAGCGCGCTATTTT 59.419 36.000 46.76 32.19 45.83 1.82
414 415 5.109210 TCAATATGCTATAGCGCGCTATTT 58.891 37.500 46.76 33.75 45.83 1.40
415 416 4.682787 TCAATATGCTATAGCGCGCTATT 58.317 39.130 46.76 34.31 45.83 1.73
416 417 4.036852 TCTCAATATGCTATAGCGCGCTAT 59.963 41.667 44.16 44.16 45.83 2.97
417 418 3.377172 TCTCAATATGCTATAGCGCGCTA 59.623 43.478 39.72 39.72 45.83 4.26
418 419 2.164422 TCTCAATATGCTATAGCGCGCT 59.836 45.455 38.01 38.01 45.83 5.92
419 420 2.530177 TCTCAATATGCTATAGCGCGC 58.470 47.619 26.66 26.66 45.83 6.86
420 421 5.709011 AATTCTCAATATGCTATAGCGCG 57.291 39.130 19.55 0.00 45.83 6.86
421 422 6.314896 AGGAAATTCTCAATATGCTATAGCGC 59.685 38.462 19.55 0.00 45.83 5.92
422 423 7.253917 CGAGGAAATTCTCAATATGCTATAGCG 60.254 40.741 19.55 5.29 37.46 4.26
423 424 7.465245 GCGAGGAAATTCTCAATATGCTATAGC 60.465 40.741 18.18 18.18 36.20 2.97
424 425 7.763528 AGCGAGGAAATTCTCAATATGCTATAG 59.236 37.037 0.00 0.00 33.59 1.31
425 426 7.615403 AGCGAGGAAATTCTCAATATGCTATA 58.385 34.615 0.00 0.00 33.59 1.31
426 427 6.471146 AGCGAGGAAATTCTCAATATGCTAT 58.529 36.000 0.00 0.00 33.59 2.97
427 428 5.858381 AGCGAGGAAATTCTCAATATGCTA 58.142 37.500 0.00 0.00 33.59 3.49
428 429 4.712476 AGCGAGGAAATTCTCAATATGCT 58.288 39.130 0.00 0.00 33.59 3.79
429 430 6.545504 TTAGCGAGGAAATTCTCAATATGC 57.454 37.500 0.00 0.00 33.59 3.14
434 435 9.996554 TGATATATTTAGCGAGGAAATTCTCAA 57.003 29.630 0.00 0.00 33.59 3.02
435 436 9.645059 CTGATATATTTAGCGAGGAAATTCTCA 57.355 33.333 0.00 0.00 33.59 3.27
436 437 8.599774 GCTGATATATTTAGCGAGGAAATTCTC 58.400 37.037 7.04 0.00 0.00 2.87
437 438 8.485976 GCTGATATATTTAGCGAGGAAATTCT 57.514 34.615 7.04 0.00 0.00 2.40
448 449 8.467402 AGACATTGTACGCTGATATATTTAGC 57.533 34.615 11.06 11.06 0.00 3.09
449 450 8.789743 CGAGACATTGTACGCTGATATATTTAG 58.210 37.037 1.85 0.00 0.00 1.85
450 451 7.272731 GCGAGACATTGTACGCTGATATATTTA 59.727 37.037 23.77 0.00 46.06 1.40
451 452 6.089551 GCGAGACATTGTACGCTGATATATTT 59.910 38.462 23.77 0.00 46.06 1.40
452 453 5.573282 GCGAGACATTGTACGCTGATATATT 59.427 40.000 23.77 0.00 46.06 1.28
453 454 5.096169 GCGAGACATTGTACGCTGATATAT 58.904 41.667 23.77 0.00 46.06 0.86
454 455 4.473199 GCGAGACATTGTACGCTGATATA 58.527 43.478 23.77 0.00 46.06 0.86
455 456 3.309388 GCGAGACATTGTACGCTGATAT 58.691 45.455 23.77 0.00 46.06 1.63
456 457 2.727777 GCGAGACATTGTACGCTGATA 58.272 47.619 23.77 0.00 46.06 2.15
457 458 1.560923 GCGAGACATTGTACGCTGAT 58.439 50.000 23.77 0.00 46.06 2.90
458 459 3.030209 GCGAGACATTGTACGCTGA 57.970 52.632 23.77 0.00 46.06 4.26
461 462 5.313641 TGCTATTAGCGAGACATTGTACGC 61.314 45.833 23.69 23.69 46.26 4.42
462 463 4.146616 GTGCTATTAGCGAGACATTGTACG 59.853 45.833 10.94 10.23 46.26 3.67
463 464 4.146616 CGTGCTATTAGCGAGACATTGTAC 59.853 45.833 10.94 0.00 46.26 2.90
464 465 4.287720 CGTGCTATTAGCGAGACATTGTA 58.712 43.478 10.94 0.00 46.26 2.41
465 466 3.116300 CGTGCTATTAGCGAGACATTGT 58.884 45.455 10.94 0.00 46.26 2.71
466 467 2.097202 GCGTGCTATTAGCGAGACATTG 60.097 50.000 10.94 0.00 46.26 2.82
467 468 2.128035 GCGTGCTATTAGCGAGACATT 58.872 47.619 10.94 0.00 46.26 2.71
468 469 1.338337 AGCGTGCTATTAGCGAGACAT 59.662 47.619 10.94 0.00 46.26 3.06
469 470 0.738975 AGCGTGCTATTAGCGAGACA 59.261 50.000 10.94 0.00 46.26 3.41
470 471 2.682952 TAGCGTGCTATTAGCGAGAC 57.317 50.000 10.94 3.28 46.26 3.36
471 472 4.214758 TGTTATAGCGTGCTATTAGCGAGA 59.785 41.667 18.62 0.00 46.26 4.04
472 473 4.321217 GTGTTATAGCGTGCTATTAGCGAG 59.679 45.833 18.62 8.24 46.26 5.03
473 474 4.224433 GTGTTATAGCGTGCTATTAGCGA 58.776 43.478 18.62 0.00 46.26 4.93
474 475 3.057739 CGTGTTATAGCGTGCTATTAGCG 59.942 47.826 18.62 12.90 46.26 4.26
475 476 4.224433 TCGTGTTATAGCGTGCTATTAGC 58.776 43.478 18.62 8.80 42.82 3.09
476 477 9.371333 CTATATCGTGTTATAGCGTGCTATTAG 57.629 37.037 18.62 8.00 39.65 1.73
477 478 7.854422 GCTATATCGTGTTATAGCGTGCTATTA 59.146 37.037 18.62 7.99 44.12 0.98
478 479 6.691818 GCTATATCGTGTTATAGCGTGCTATT 59.308 38.462 18.62 2.92 44.12 1.73
479 480 6.200100 GCTATATCGTGTTATAGCGTGCTAT 58.800 40.000 17.65 17.65 44.12 2.97
480 481 5.566623 GCTATATCGTGTTATAGCGTGCTA 58.433 41.667 3.73 3.73 44.12 3.49
481 482 4.413087 GCTATATCGTGTTATAGCGTGCT 58.587 43.478 11.95 0.00 44.12 4.40
482 483 4.740185 GCTATATCGTGTTATAGCGTGC 57.260 45.455 11.95 0.00 44.12 5.34
501 502 9.442047 GACCTCAAAATATGCTATTAGTATGCT 57.558 33.333 4.70 0.00 0.00 3.79
502 503 9.442047 AGACCTCAAAATATGCTATTAGTATGC 57.558 33.333 4.70 0.00 0.00 3.14
504 505 9.442047 GCAGACCTCAAAATATGCTATTAGTAT 57.558 33.333 0.00 0.00 0.00 2.12
505 506 8.428852 TGCAGACCTCAAAATATGCTATTAGTA 58.571 33.333 0.00 0.00 34.80 1.82
506 507 7.227512 GTGCAGACCTCAAAATATGCTATTAGT 59.772 37.037 0.00 0.00 34.80 2.24
507 508 7.443575 AGTGCAGACCTCAAAATATGCTATTAG 59.556 37.037 0.00 0.00 34.80 1.73
508 509 7.282585 AGTGCAGACCTCAAAATATGCTATTA 58.717 34.615 0.00 0.00 34.80 0.98
509 510 6.125029 AGTGCAGACCTCAAAATATGCTATT 58.875 36.000 0.00 0.00 34.80 1.73
510 511 5.688807 AGTGCAGACCTCAAAATATGCTAT 58.311 37.500 0.00 0.00 34.80 2.97
511 512 5.102953 AGTGCAGACCTCAAAATATGCTA 57.897 39.130 0.00 0.00 34.80 3.49
512 513 3.960571 AGTGCAGACCTCAAAATATGCT 58.039 40.909 0.00 0.00 34.80 3.79
513 514 6.382869 AATAGTGCAGACCTCAAAATATGC 57.617 37.500 0.00 0.00 0.00 3.14
514 515 7.221452 GCAAAATAGTGCAGACCTCAAAATATG 59.779 37.037 0.00 0.00 44.29 1.78
515 516 7.260603 GCAAAATAGTGCAGACCTCAAAATAT 58.739 34.615 0.00 0.00 44.29 1.28
516 517 6.620678 GCAAAATAGTGCAGACCTCAAAATA 58.379 36.000 0.00 0.00 44.29 1.40
517 518 5.473039 GCAAAATAGTGCAGACCTCAAAAT 58.527 37.500 0.00 0.00 44.29 1.82
518 519 4.870363 GCAAAATAGTGCAGACCTCAAAA 58.130 39.130 0.00 0.00 44.29 2.44
519 520 4.503741 GCAAAATAGTGCAGACCTCAAA 57.496 40.909 0.00 0.00 44.29 2.69
555 556 9.793259 AGGACTTGTTATCAGTAGAATGAAAAA 57.207 29.630 0.00 0.00 31.76 1.94
556 557 9.793259 AAGGACTTGTTATCAGTAGAATGAAAA 57.207 29.630 0.00 0.00 31.76 2.29
557 558 9.436957 GAAGGACTTGTTATCAGTAGAATGAAA 57.563 33.333 0.00 0.00 31.76 2.69
558 559 8.816894 AGAAGGACTTGTTATCAGTAGAATGAA 58.183 33.333 0.00 0.00 31.76 2.57
559 560 8.367660 AGAAGGACTTGTTATCAGTAGAATGA 57.632 34.615 0.00 0.00 0.00 2.57
560 561 9.522804 GTAGAAGGACTTGTTATCAGTAGAATG 57.477 37.037 0.00 0.00 0.00 2.67
561 562 8.697292 GGTAGAAGGACTTGTTATCAGTAGAAT 58.303 37.037 0.00 0.00 0.00 2.40
562 563 7.672660 TGGTAGAAGGACTTGTTATCAGTAGAA 59.327 37.037 0.00 0.00 0.00 2.10
563 564 7.179966 TGGTAGAAGGACTTGTTATCAGTAGA 58.820 38.462 0.00 0.00 0.00 2.59
564 565 7.406031 TGGTAGAAGGACTTGTTATCAGTAG 57.594 40.000 0.00 0.00 0.00 2.57
565 566 6.127423 GCTGGTAGAAGGACTTGTTATCAGTA 60.127 42.308 11.77 0.00 0.00 2.74
566 567 5.337652 GCTGGTAGAAGGACTTGTTATCAGT 60.338 44.000 11.77 0.00 0.00 3.41
567 568 5.112686 GCTGGTAGAAGGACTTGTTATCAG 58.887 45.833 8.18 8.18 0.00 2.90
568 569 4.530553 TGCTGGTAGAAGGACTTGTTATCA 59.469 41.667 0.00 0.00 0.00 2.15
569 570 5.086104 TGCTGGTAGAAGGACTTGTTATC 57.914 43.478 0.00 0.00 0.00 1.75
570 571 4.532521 ACTGCTGGTAGAAGGACTTGTTAT 59.467 41.667 0.00 0.00 0.00 1.89
571 572 3.901844 ACTGCTGGTAGAAGGACTTGTTA 59.098 43.478 0.00 0.00 0.00 2.41
572 573 2.706190 ACTGCTGGTAGAAGGACTTGTT 59.294 45.455 0.00 0.00 0.00 2.83
573 574 2.330216 ACTGCTGGTAGAAGGACTTGT 58.670 47.619 0.00 0.00 0.00 3.16
594 595 1.001974 TGTTATGCTGGTCGTTGCTCT 59.998 47.619 0.00 0.00 0.00 4.09
605 607 5.581126 TTGGCTAGGATTTTGTTATGCTG 57.419 39.130 0.00 0.00 0.00 4.41
614 616 4.949856 CACTGTACCATTGGCTAGGATTTT 59.050 41.667 1.54 0.00 0.00 1.82
662 664 2.904866 TTGCAGACGGTGGCAACC 60.905 61.111 0.00 0.00 44.41 3.77
697 707 2.217847 CGCGTATGTACCCGAAGAAATG 59.782 50.000 0.00 0.00 29.59 2.32
730 740 4.647424 ATCATGAGAGAGAAAGACCGAC 57.353 45.455 0.09 0.00 0.00 4.79
731 741 4.706962 TCAATCATGAGAGAGAAAGACCGA 59.293 41.667 0.09 0.00 0.00 4.69
732 742 5.003692 TCAATCATGAGAGAGAAAGACCG 57.996 43.478 0.09 0.00 0.00 4.79
791 801 5.521906 TTTCATCCGTGGAAATGTCAAAA 57.478 34.783 0.00 0.00 29.78 2.44
860 871 5.597806 TCCTTGCAATCGTAGTTATACCAG 58.402 41.667 0.00 0.00 0.00 4.00
874 885 3.826157 TGGTCGAAAGAATTCCTTGCAAT 59.174 39.130 0.00 0.00 45.01 3.56
898 909 7.642978 GTGTTTAATCTAATCATTCTGCTGCTG 59.357 37.037 0.00 0.00 0.00 4.41
940 951 1.717194 TTGGTCGTATTCGTTGGAGC 58.283 50.000 0.00 0.00 38.33 4.70
1116 1130 3.990318 GCCAATTACCTTAGACATGGC 57.010 47.619 0.00 0.00 44.24 4.40
1160 1174 0.679002 CTACACCCTCGAAGGACGGA 60.679 60.000 7.17 0.00 37.67 4.69
1162 1176 0.450983 GTCTACACCCTCGAAGGACG 59.549 60.000 7.17 0.00 37.67 4.79
1166 1180 1.471676 GGCATGTCTACACCCTCGAAG 60.472 57.143 0.00 0.00 0.00 3.79
1190 1204 5.291858 TCAGTACAAATGTTCTCATGATCGC 59.708 40.000 0.00 0.00 34.19 4.58
1254 1275 3.726607 GAGATCGGCTCTGATCACAATT 58.273 45.455 17.98 0.46 45.81 2.32
1333 1354 4.339247 GGAATGAAGAGAGTCAGAGAGAGG 59.661 50.000 0.00 0.00 0.00 3.69
1360 1386 6.757478 GGTAAAGAGAAGTAGTTGCAGGATAC 59.243 42.308 0.00 0.00 0.00 2.24
1370 1396 7.974501 CACATACATTCGGTAAAGAGAAGTAGT 59.025 37.037 0.00 0.00 35.14 2.73
1373 1405 6.812160 GTCACATACATTCGGTAAAGAGAAGT 59.188 38.462 0.00 0.00 35.14 3.01
1509 1542 4.796231 ACGCTGACGATGGACGCC 62.796 66.667 0.00 0.00 46.94 5.68
1527 1560 1.738099 CTTGGGCTTGTCGTCCTCG 60.738 63.158 0.00 0.00 38.58 4.63
1829 1898 3.440151 GCATGGCGCATCATCCTT 58.560 55.556 10.83 0.00 41.79 3.36
1854 1923 2.046988 CGCCATGACAGTGCTCCA 60.047 61.111 0.00 0.00 0.00 3.86
1892 1961 2.031191 CACCCACATACGGTAAAATCGC 59.969 50.000 0.00 0.00 30.42 4.58
1903 1972 0.250727 ACACTGGCACACCCACATAC 60.251 55.000 0.00 0.00 39.18 2.39
1905 1974 1.529010 CACACTGGCACACCCACAT 60.529 57.895 0.00 0.00 39.18 3.21
1910 1979 1.675552 ACTAAACACACTGGCACACC 58.324 50.000 0.00 0.00 0.00 4.16
1911 1980 2.546789 GGTACTAAACACACTGGCACAC 59.453 50.000 0.00 0.00 0.00 3.82
1912 1981 2.803852 CGGTACTAAACACACTGGCACA 60.804 50.000 0.00 0.00 0.00 4.57
1913 1982 1.796459 CGGTACTAAACACACTGGCAC 59.204 52.381 0.00 0.00 0.00 5.01
1918 1987 5.772825 TGAACTACGGTACTAAACACACT 57.227 39.130 0.00 0.00 0.00 3.55
1954 2023 3.126686 ACAAAACAAACTGCAACAATGGC 59.873 39.130 0.00 0.00 0.00 4.40
1956 2025 5.280328 ACACAAAACAAACTGCAACAATG 57.720 34.783 0.00 0.00 0.00 2.82
1971 2048 5.353956 CAGGGAATCATCGATGTACACAAAA 59.646 40.000 24.09 3.45 0.00 2.44
1975 2052 3.181465 ACCAGGGAATCATCGATGTACAC 60.181 47.826 24.09 16.75 0.00 2.90
1982 2059 3.772572 TGAAGTAACCAGGGAATCATCGA 59.227 43.478 0.00 0.00 0.00 3.59
2008 2085 4.849329 GTGCCGACCGCCGAGTAG 62.849 72.222 0.00 0.00 41.76 2.57
2017 2097 0.586802 GAAACAACAGAGTGCCGACC 59.413 55.000 0.00 0.00 0.00 4.79
2074 2161 4.216731 GACCAATTTCTTCGGTTCGTTTC 58.783 43.478 0.00 0.00 31.63 2.78
2210 2300 3.397482 AGCTGTAATGATTCGGCTCATC 58.603 45.455 5.50 0.00 41.70 2.92
2218 2308 9.282247 CTTAATGACACAAAGCTGTAATGATTC 57.718 33.333 0.00 0.00 33.22 2.52
2226 2316 4.801891 CATGCTTAATGACACAAAGCTGT 58.198 39.130 19.10 9.34 44.66 4.40
2227 2317 3.611113 GCATGCTTAATGACACAAAGCTG 59.389 43.478 11.37 15.79 44.66 4.24
2242 2342 3.988976 TTCTCTAAGTCCTGCATGCTT 57.011 42.857 20.33 6.81 0.00 3.91
2243 2343 3.988976 TTTCTCTAAGTCCTGCATGCT 57.011 42.857 20.33 0.00 0.00 3.79
2311 2411 9.086336 CACATTTTTGAGTTGTTCATAAGTTGT 57.914 29.630 0.00 0.00 35.27 3.32
2323 2423 5.649557 TCAGGACAACACATTTTTGAGTTG 58.350 37.500 12.61 12.61 42.96 3.16
2326 2426 5.693104 CCATTCAGGACAACACATTTTTGAG 59.307 40.000 0.00 0.00 41.22 3.02
2328 2428 4.751098 CCCATTCAGGACAACACATTTTTG 59.249 41.667 0.00 0.00 41.22 2.44
2329 2429 4.653341 TCCCATTCAGGACAACACATTTTT 59.347 37.500 0.00 0.00 41.22 1.94
2331 2431 3.828451 CTCCCATTCAGGACAACACATTT 59.172 43.478 0.00 0.00 41.22 2.32
2359 2464 4.505922 GCTTGCAGTACTGACAGATGATAC 59.494 45.833 27.08 5.03 0.00 2.24
2377 2482 5.842445 CAGAACTTCTCTAGCAAAAGCTTGC 60.842 44.000 0.00 0.00 44.96 4.01
2435 2541 7.382110 TCTCAAATCTTGAACTTCACTAGGAG 58.618 38.462 0.00 0.00 39.58 3.69
2450 2556 5.619220 AGCACTGAAGAGTTCTCAAATCTT 58.381 37.500 0.00 0.00 36.02 2.40
2467 2573 0.109342 AAACCCCTCTGTGAGCACTG 59.891 55.000 1.99 1.78 0.00 3.66
2468 2574 1.348036 GTAAACCCCTCTGTGAGCACT 59.652 52.381 1.99 0.00 0.00 4.40
2589 2695 7.545265 TCTGTACCAAGCATTTGCATTTTTATC 59.455 33.333 5.20 0.00 45.16 1.75
2686 2792 7.292120 AGTCTTTTTGCTCCTATCTATCTCCAT 59.708 37.037 0.00 0.00 0.00 3.41
2722 2830 5.065235 CCTGTTTTGAAATTCTGGCCAATT 58.935 37.500 7.01 0.88 0.00 2.32
2737 2845 7.225145 TGAAGCATTTCATTTCTTCCTGTTTTG 59.775 33.333 0.00 0.00 38.37 2.44
2744 2852 6.506500 TCTCTGAAGCATTTCATTTCTTCC 57.493 37.500 0.00 0.00 42.19 3.46
2772 2881 9.973661 TGTCTCCATCTTTAATTTCTTTATCCA 57.026 29.630 0.00 0.00 0.00 3.41
2974 3084 4.439289 GCACCTATTTGAGAAATGTCCTGC 60.439 45.833 0.00 0.00 32.38 4.85
2977 3087 5.841957 ATGCACCTATTTGAGAAATGTCC 57.158 39.130 0.00 0.00 32.38 4.02
3020 3130 9.178758 CTTGCATAGAGAAGGGTTTAATACTTT 57.821 33.333 0.00 0.00 0.00 2.66
3021 3131 8.548877 TCTTGCATAGAGAAGGGTTTAATACTT 58.451 33.333 0.00 0.00 0.00 2.24
3022 3132 8.090788 TCTTGCATAGAGAAGGGTTTAATACT 57.909 34.615 0.00 0.00 0.00 2.12
3023 3133 8.732746 TTCTTGCATAGAGAAGGGTTTAATAC 57.267 34.615 0.00 0.00 33.51 1.89
3024 3134 9.920946 ATTTCTTGCATAGAGAAGGGTTTAATA 57.079 29.630 0.00 0.00 34.84 0.98
3025 3135 8.829373 ATTTCTTGCATAGAGAAGGGTTTAAT 57.171 30.769 0.00 0.00 34.84 1.40
3139 3249 3.161866 GCCCTTTGACATCCCACTTAAA 58.838 45.455 0.00 0.00 0.00 1.52
3153 3263 4.083164 GCAAAATCATCCAAAAGCCCTTTG 60.083 41.667 2.55 2.55 43.56 2.77
3238 3348 7.989416 ATTTCTGAATTTGTTTGGCATCATT 57.011 28.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.