AutoCloner

Multiple sequence alignment - TraesCS3D01G176100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G176100	chr3D	100.000	3259	0	0	1	3259	157551438	157548180	0.000000e+00	6019.0
1	TraesCS3D01G176100	chr3B	90.744	2539	105	46	1	2467	228809265	228806785	0.000000e+00	3267.0
2	TraesCS3D01G176100	chr3B	90.793	782	46	15	2495	3258	521800699	521799926	0.000000e+00	1022.0
3	TraesCS3D01G176100	chr3B	77.049	488	102	7	1730	2209	781356531	781357016	4.140000e-69	272.0
4	TraesCS3D01G176100	chr3A	91.107	1608	92	17	870	2467	170648390	170649956	0.000000e+00	2130.0
5	TraesCS3D01G176100	chr3A	92.352	876	32	12	1	869	170645042	170645889	0.000000e+00	1214.0
6	TraesCS3D01G176100	chr3A	91.188	783	38	13	2495	3259	710892138	710892907	0.000000e+00	1035.0
7	TraesCS3D01G176100	chr3A	91.126	755	48	11	2486	3224	740803646	740804397	0.000000e+00	1005.0
8	TraesCS3D01G176100	chr3A	77.112	734	123	30	2495	3205	652578373	652579084	1.830000e-102	383.0
9	TraesCS3D01G176100	chr3A	76.567	734	127	29	2495	3205	652666555	652667266	8.600000e-96	361.0
10	TraesCS3D01G176100	chr3A	93.960	149	9	0	2331	2479	170650707	170650855	3.270000e-55	226.0
11	TraesCS3D01G176100	chr2D	93.614	783	32	7	2494	3259	615480653	615479872	0.000000e+00	1153.0
12	TraesCS3D01G176100	chr7B	85.144	801	77	20	2495	3255	117797052	117796254	0.000000e+00	782.0
13	TraesCS3D01G176100	chr1A	82.959	534	85	3	1726	2256	63005335	63004805	8.180000e-131	477.0
14	TraesCS3D01G176100	chr1D	82.056	535	88	5	1726	2256	63922948	63922418	1.780000e-122	449.0
15	TraesCS3D01G176100	chr1D	89.474	57	6	0	1073	1129	63923094	63923038	4.510000e-09	73.1
16	TraesCS3D01G176100	chr6D	77.799	527	105	9	1724	2244	454996296	454995776	6.790000e-82	315.0
17	TraesCS3D01G176100	chr6D	77.019	483	103	7	1724	2202	455422128	455422606	1.490000e-68	270.0
18	TraesCS3D01G176100	chr6A	77.273	528	106	11	1724	2244	601264443	601263923	6.840000e-77	298.0
19	TraesCS3D01G176100	chr6A	77.938	485	97	8	1724	2203	602131714	602132193	8.840000e-76	294.0
20	TraesCS3D01G176100	chr7A	88.406	69	8	0	2829	2897	518606	518538	2.080000e-12	84.2
21	TraesCS3D01G176100	chrUn	91.111	45	4	0	2830	2874	51423524	51423480	9.760000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G176100	chr3D	157548180	157551438	3258	True	6019.00	6019	100.000	1	3259	1	chr3D.!!$R1	3258
1	TraesCS3D01G176100	chr3B	228806785	228809265	2480	True	3267.00	3267	90.744	1	2467	1	chr3B.!!$R1	2466
2	TraesCS3D01G176100	chr3B	521799926	521800699	773	True	1022.00	1022	90.793	2495	3258	1	chr3B.!!$R2	763
3	TraesCS3D01G176100	chr3A	170645042	170650855	5813	False	1190.00	2130	92.473	1	2479	3	chr3A.!!$F5	2478
4	TraesCS3D01G176100	chr3A	710892138	710892907	769	False	1035.00	1035	91.188	2495	3259	1	chr3A.!!$F3	764
5	TraesCS3D01G176100	chr3A	740803646	740804397	751	False	1005.00	1005	91.126	2486	3224	1	chr3A.!!$F4	738
6	TraesCS3D01G176100	chr3A	652578373	652579084	711	False	383.00	383	77.112	2495	3205	1	chr3A.!!$F1	710
7	TraesCS3D01G176100	chr3A	652666555	652667266	711	False	361.00	361	76.567	2495	3205	1	chr3A.!!$F2	710
8	TraesCS3D01G176100	chr2D	615479872	615480653	781	True	1153.00	1153	93.614	2494	3259	1	chr2D.!!$R1	765
9	TraesCS3D01G176100	chr7B	117796254	117797052	798	True	782.00	782	85.144	2495	3255	1	chr7B.!!$R1	760
10	TraesCS3D01G176100	chr1A	63004805	63005335	530	True	477.00	477	82.959	1726	2256	1	chr1A.!!$R1	530
11	TraesCS3D01G176100	chr1D	63922418	63923094	676	True	261.05	449	85.765	1073	2256	2	chr1D.!!$R1	1183
12	TraesCS3D01G176100	chr6D	454995776	454996296	520	True	315.00	315	77.799	1724	2244	1	chr6D.!!$R1	520
13	TraesCS3D01G176100	chr6A	601263923	601264443	520	True	298.00	298	77.273	1724	2244	1	chr6A.!!$R1	520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
585	596	0.036306	CCGTCACCAAACTAGCCCTT	59.964	55.0	0.0	0.0	0.0	3.95	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2492	5064	0.383231	CGCGGGGTAACACCTAGTAG	59.617	60.0	0.0	0.0	38.64	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
68	69	3.063485	GGACAGAGCAGAAAAGTCAGAC	58.937	50.000	0.00	0.00	0.00	3.51
140	146	6.263168	CCCAAGTGAAGTTCAGACTAACAAAT	59.737	38.462	5.62	0.00	34.21	2.32
209	215	6.039616	CCGGTTCAAATCAAGAAAACAAGAA	58.960	36.000	0.00	0.00	0.00	2.52
324	334	1.670083	GCAGCGTAACGGGACCTTT	60.670	57.895	0.00	0.00	0.00	3.11
325	335	1.232621	GCAGCGTAACGGGACCTTTT	61.233	55.000	0.00	0.00	0.00	2.27
332	342	0.898326	AACGGGACCTTTTGATGCCC	60.898	55.000	0.00	0.00	35.40	5.36
357	368	3.253432	CAGAGCCATGTAGCGTCATACTA	59.747	47.826	0.00	0.00	38.01	1.82
584	595	0.834687	TCCGTCACCAAACTAGCCCT	60.835	55.000	0.00	0.00	0.00	5.19
585	596	0.036306	CCGTCACCAAACTAGCCCTT	59.964	55.000	0.00	0.00	0.00	3.95
586	597	1.156736	CGTCACCAAACTAGCCCTTG	58.843	55.000	0.00	0.00	0.00	3.61
587	598	1.542547	CGTCACCAAACTAGCCCTTGT	60.543	52.381	0.00	0.00	0.00	3.16
588	599	1.880027	GTCACCAAACTAGCCCTTGTG	59.120	52.381	0.00	0.00	0.00	3.33
589	600	1.771854	TCACCAAACTAGCCCTTGTGA	59.228	47.619	0.00	0.00	0.00	3.58
590	601	2.173782	TCACCAAACTAGCCCTTGTGAA	59.826	45.455	0.00	0.00	0.00	3.18
591	602	2.554032	CACCAAACTAGCCCTTGTGAAG	59.446	50.000	0.00	0.00	0.00	3.02
656	669	1.217244	GACGACGTAAGGGGCACAT	59.783	57.895	0.00	0.00	46.39	3.21
659	672	0.390603	CGACGTAAGGGGCACATGAA	60.391	55.000	0.00	0.00	46.39	2.57
665	678	1.234615	AAGGGGCACATGAACGAACG	61.235	55.000	0.00	0.00	0.00	3.95
666	679	1.964373	GGGGCACATGAACGAACGT	60.964	57.895	0.00	0.00	0.00	3.99
803	827	6.351371	TTGAGCTTCAAGTAGGAATACTCCTG	60.351	42.308	2.13	0.00	40.87	3.86
905	3429	4.091549	CCTTCCCCGCTATATAAGTACCA	58.908	47.826	0.00	0.00	0.00	3.25
907	3431	3.094572	TCCCCGCTATATAAGTACCAGC	58.905	50.000	0.00	0.00	0.00	4.85
1016	3568	2.987547	CATGATGATGGCCCGGGC	60.988	66.667	38.57	38.57	41.06	6.13
1018	3570	3.502621	ATGATGATGGCCCGGGCTG	62.503	63.158	42.70	8.91	41.60	4.85
1019	3571	4.962836	GATGATGGCCCGGGCTGG	62.963	72.222	42.70	8.48	41.60	4.85
1160	3712	6.386342	TCAAGATCTCCTGAATTCCTCTTCAT	59.614	38.462	2.27	0.00	34.76	2.57
1172	3724	6.935240	ATTCCTCTTCATATTGGATCGGTA	57.065	37.500	0.00	0.00	0.00	4.02
1182	3734	1.392589	TGGATCGGTACCGTACTTCC	58.607	55.000	32.16	28.77	40.74	3.46
1199	3751	0.391661	TCCGCTCTGCATTGAAGACC	60.392	55.000	0.00	0.00	0.00	3.85
1272	3824	8.288208	CGTACAGTAGGATAGAATTCACGTTAT	58.712	37.037	8.44	0.00	0.00	1.89
1273	3825	9.962783	GTACAGTAGGATAGAATTCACGTTATT	57.037	33.333	8.44	0.00	0.00	1.40
1276	3828	9.627395	CAGTAGGATAGAATTCACGTTATTAGG	57.373	37.037	8.44	0.00	0.00	2.69
1277	3829	9.364653	AGTAGGATAGAATTCACGTTATTAGGT	57.635	33.333	8.44	0.00	0.00	3.08
1327	3879	3.193267	GTCAATGCTAAATCCAGTGCCAA	59.807	43.478	0.00	0.00	0.00	4.52
1370	3922	4.672587	ATCGATATTACCGATGGGATGG	57.327	45.455	0.00	0.00	44.06	3.51
1382	3936	3.744660	GATGGGATGGATGGAAGTACAC	58.255	50.000	0.00	0.00	0.00	2.90
1399	3953	8.231837	GGAAGTACACGTTTAGCATTCAAAATA	58.768	33.333	0.00	0.00	0.00	1.40
1400	3954	8.944212	AAGTACACGTTTAGCATTCAAAATAC	57.056	30.769	0.00	0.00	0.00	1.89
1401	3955	8.319143	AGTACACGTTTAGCATTCAAAATACT	57.681	30.769	0.00	0.00	0.00	2.12
1402	3956	9.426837	AGTACACGTTTAGCATTCAAAATACTA	57.573	29.630	0.00	0.00	0.00	1.82
1403	3957	9.469239	GTACACGTTTAGCATTCAAAATACTAC	57.531	33.333	0.00	0.00	0.00	2.73
1404	3958	8.319143	ACACGTTTAGCATTCAAAATACTACT	57.681	30.769	0.00	0.00	0.00	2.57
1405	3959	9.426837	ACACGTTTAGCATTCAAAATACTACTA	57.573	29.630	0.00	0.00	0.00	1.82
1446	4000	5.054390	TCCGAACAATTCAATAGTTTGCC	57.946	39.130	0.00	0.00	32.61	4.52
1485	4039	6.820470	TCAAACGGTGATTCAATTTGAAAC	57.180	33.333	15.34	13.17	40.12	2.78
1496	4050	5.576563	TCAATTTGAAACTGGTCCTCCTA	57.423	39.130	0.00	0.00	34.23	2.94
1619	4173	2.870175	ACCATCATTCCGAACAACCAA	58.130	42.857	0.00	0.00	0.00	3.67
1620	4174	2.556622	ACCATCATTCCGAACAACCAAC	59.443	45.455	0.00	0.00	0.00	3.77
1623	4177	4.094887	CCATCATTCCGAACAACCAACTAG	59.905	45.833	0.00	0.00	0.00	2.57
1629	4183	5.376854	TCCGAACAACCAACTAGTAGTAC	57.623	43.478	2.50	0.00	0.00	2.73
1636	4190	5.244626	ACAACCAACTAGTAGTACGGACAAT	59.755	40.000	20.41	5.82	0.00	2.71
1654	4208	3.058016	ACAATGCAAAAGATCGTGACCAG	60.058	43.478	0.00	0.00	0.00	4.00
1655	4209	2.254546	TGCAAAAGATCGTGACCAGT	57.745	45.000	0.00	0.00	0.00	4.00
1678	4232	1.019278	GTCGTCCATGCGTGTCCAAT	61.019	55.000	4.96	0.00	0.00	3.16
1683	4237	1.153978	CATGCGTGTCCAATGGCAC	60.154	57.895	14.12	14.12	38.36	5.01
1703	4267	5.237344	GGCACATGTAAGATCCTCATGTAAC	59.763	44.000	19.99	16.32	46.54	2.50
1705	4269	6.586344	CACATGTAAGATCCTCATGTAACCT	58.414	40.000	19.99	3.58	46.54	3.50
2389	4958	0.319125	TGCAGTCGTGTCGTGCATTA	60.319	50.000	0.00	0.00	42.20	1.90
2392	4961	2.159707	GCAGTCGTGTCGTGCATTATTT	60.160	45.455	0.00	0.00	37.16	1.40
2409	4978	2.449031	TTTGCGACCTGACTGGCGAT	62.449	55.000	15.60	0.00	40.22	4.58
2422	4991	1.204704	CTGGCGATCTGTGTAAGTGGA	59.795	52.381	0.00	0.00	0.00	4.02
2432	5001	3.713288	TGTGTAAGTGGACTGAAGAACG	58.287	45.455	0.00	0.00	0.00	3.95
2467	5039	3.644265	TGCTAAGTTGGACTGTTGGAGTA	59.356	43.478	0.00	0.00	33.83	2.59
2468	5040	3.995048	GCTAAGTTGGACTGTTGGAGTAC	59.005	47.826	0.00	0.00	35.80	2.73
2469	5041	4.262506	GCTAAGTTGGACTGTTGGAGTACT	60.263	45.833	0.00	0.00	36.31	2.73
2471	5043	2.368875	AGTTGGACTGTTGGAGTACTGG	59.631	50.000	0.00	0.00	36.31	4.00
2473	5045	2.248248	TGGACTGTTGGAGTACTGGAG	58.752	52.381	0.00	0.00	36.31	3.86
2474	5046	1.550976	GGACTGTTGGAGTACTGGAGG	59.449	57.143	0.00	0.00	33.83	4.30
2475	5047	1.550976	GACTGTTGGAGTACTGGAGGG	59.449	57.143	0.00	0.00	33.83	4.30
2476	5048	0.905357	CTGTTGGAGTACTGGAGGGG	59.095	60.000	0.00	0.00	0.00	4.79
2478	5050	1.196012	GTTGGAGTACTGGAGGGGAG	58.804	60.000	0.00	0.00	0.00	4.30
2481	5053	1.651770	TGGAGTACTGGAGGGGAGAAT	59.348	52.381	0.00	0.00	0.00	2.40
2484	5056	3.140519	GGAGTACTGGAGGGGAGAATCTA	59.859	52.174	0.00	0.00	33.73	1.98
2486	5058	5.015391	GGAGTACTGGAGGGGAGAATCTATA	59.985	48.000	0.00	0.00	33.73	1.31
2487	5059	6.297948	GGAGTACTGGAGGGGAGAATCTATAT	60.298	46.154	0.00	0.00	33.73	0.86
2488	5060	6.737608	AGTACTGGAGGGGAGAATCTATATC	58.262	44.000	0.00	0.00	33.73	1.63
2489	5061	5.894715	ACTGGAGGGGAGAATCTATATCT	57.105	43.478	0.00	0.00	33.73	1.98
2491	5063	7.553110	ACTGGAGGGGAGAATCTATATCTAT	57.447	40.000	0.00	0.00	33.73	1.98
2492	5064	7.591821	ACTGGAGGGGAGAATCTATATCTATC	58.408	42.308	0.00	0.00	33.73	2.08
2783	5396	2.162681	GTCAACAGATGGTCCCCAAAG	58.837	52.381	0.00	0.00	36.95	2.77
2806	5419	6.288294	AGAATGTGTTAGCAGTGTGTTAAGA	58.712	36.000	0.00	0.00	0.00	2.10
2983	6361	4.724399	ACATGTGTTGTCAATCAGGGTAA	58.276	39.130	0.00	0.00	30.89	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
68	69	4.067896	ACAGTTAGCTGAATGGTCACTTG	58.932	43.478	14.09	0.00	45.28	3.16
140	146	6.511121	GCTGTAGAAAAGTGTGAATTTCGACA	60.511	38.462	11.68	11.68	43.81	4.35
226	234	3.985279	CGTGTTTCTACGAGGATGTGAAA	59.015	43.478	0.00	0.00	46.46	2.69
324	334	1.913951	ATGGCTCTGTCGGGCATCAA	61.914	55.000	0.00	0.00	44.74	2.57
325	335	2.369633	ATGGCTCTGTCGGGCATCA	61.370	57.895	0.00	0.00	44.74	3.07
332	342	0.867753	GACGCTACATGGCTCTGTCG	60.868	60.000	0.00	0.00	0.00	4.35
357	368	3.066900	CGTGGAGTAGCATGCTAAGTAGT	59.933	47.826	28.44	12.16	0.00	2.73
461	472	0.838987	AGGTAAGCCACGGGAAAGGA	60.839	55.000	0.00	0.00	37.19	3.36
525	536	2.702592	ACTTTGACCGTGAACCAAGA	57.297	45.000	0.00	0.00	0.00	3.02
535	546	0.388649	AGCTGCGAGTACTTTGACCG	60.389	55.000	0.00	0.00	0.00	4.79
584	595	5.344743	AAGTCTCTCTCACAACTTCACAA	57.655	39.130	0.00	0.00	0.00	3.33
585	596	4.202161	GGAAGTCTCTCTCACAACTTCACA	60.202	45.833	14.06	0.00	45.98	3.58
586	597	4.303282	GGAAGTCTCTCTCACAACTTCAC	58.697	47.826	14.06	2.90	45.98	3.18
587	598	3.322254	GGGAAGTCTCTCTCACAACTTCA	59.678	47.826	14.06	0.00	45.98	3.02
588	599	3.322254	TGGGAAGTCTCTCTCACAACTTC	59.678	47.826	5.71	5.71	44.33	3.01
589	600	3.309296	TGGGAAGTCTCTCTCACAACTT	58.691	45.455	0.00	0.00	34.78	2.66
590	601	2.964209	TGGGAAGTCTCTCTCACAACT	58.036	47.619	0.00	0.00	0.00	3.16
591	602	3.971245	ATGGGAAGTCTCTCTCACAAC	57.029	47.619	0.00	0.00	0.00	3.32
656	669	3.318886	TGCATAAAGCTACGTTCGTTCA	58.681	40.909	2.62	0.00	45.94	3.18
659	672	2.534349	CGATGCATAAAGCTACGTTCGT	59.466	45.455	0.00	2.91	45.94	3.85
854	878	2.280797	GCGGCAGAGTTGGTGTGA	60.281	61.111	0.00	0.00	0.00	3.58
956	3480	1.446907	CGATTGTCTGCTTTGCTCCT	58.553	50.000	0.00	0.00	0.00	3.69
1160	3712	3.569701	GGAAGTACGGTACCGATCCAATA	59.430	47.826	39.52	18.06	42.83	1.90
1182	3734	1.929836	GTAGGTCTTCAATGCAGAGCG	59.070	52.381	6.46	0.00	42.52	5.03
1294	3846	7.450014	TGGATTTAGCATTGACTACCTTTTCAA	59.550	33.333	0.00	0.00	36.21	2.69
1295	3847	6.945435	TGGATTTAGCATTGACTACCTTTTCA	59.055	34.615	0.00	0.00	0.00	2.69
1296	3848	7.121315	ACTGGATTTAGCATTGACTACCTTTTC	59.879	37.037	0.00	0.00	0.00	2.29
1301	3853	4.035675	GCACTGGATTTAGCATTGACTACC	59.964	45.833	0.00	0.00	0.00	3.18
1307	3859	3.872511	TTGGCACTGGATTTAGCATTG	57.127	42.857	0.00	0.00	0.00	2.82
1327	3879	2.224843	TGCACTGTCTCCAACCATCAAT	60.225	45.455	0.00	0.00	0.00	2.57
1370	3922	5.350365	TGAATGCTAAACGTGTACTTCCATC	59.650	40.000	0.00	0.00	0.00	3.51
1401	3955	9.397280	CGGAAGGAAGACTATGATCATATAGTA	57.603	37.037	15.71	0.00	42.38	1.82
1402	3956	8.110271	TCGGAAGGAAGACTATGATCATATAGT	58.890	37.037	15.71	12.86	44.38	2.12
1403	3957	8.512966	TCGGAAGGAAGACTATGATCATATAG	57.487	38.462	15.71	9.67	36.83	1.31
1404	3958	8.740906	GTTCGGAAGGAAGACTATGATCATATA	58.259	37.037	15.71	0.00	34.69	0.86
1405	3959	7.233553	TGTTCGGAAGGAAGACTATGATCATAT	59.766	37.037	15.71	6.62	34.69	1.78
1485	4039	9.057089	GTATTCATACAAAATTAGGAGGACCAG	57.943	37.037	0.00	0.00	34.50	4.00
1525	4079	4.597004	AGGTGAACTTGAAGCATGATGAT	58.403	39.130	0.00	0.00	0.00	2.45
1526	4080	4.025040	AGGTGAACTTGAAGCATGATGA	57.975	40.909	0.00	0.00	0.00	2.92
1527	4081	5.885230	TTAGGTGAACTTGAAGCATGATG	57.115	39.130	0.00	0.00	0.00	3.07
1596	4150	3.005261	TGGTTGTTCGGAATGATGGTTTG	59.995	43.478	0.00	0.00	0.00	2.93
1619	4173	5.395682	TTTGCATTGTCCGTACTACTAGT	57.604	39.130	0.00	0.00	0.00	2.57
1620	4174	6.097356	TCTTTTGCATTGTCCGTACTACTAG	58.903	40.000	0.00	0.00	0.00	2.57
1623	4177	5.500290	CGATCTTTTGCATTGTCCGTACTAC	60.500	44.000	0.00	0.00	0.00	2.73
1629	4183	2.159430	TCACGATCTTTTGCATTGTCCG	59.841	45.455	0.00	0.00	0.00	4.79
1636	4190	2.254546	ACTGGTCACGATCTTTTGCA	57.745	45.000	0.00	0.00	0.00	4.08
1660	4214	1.018752	CATTGGACACGCATGGACGA	61.019	55.000	0.00	0.00	36.70	4.20
1678	4232	3.812262	CATGAGGATCTTACATGTGCCA	58.188	45.455	9.11	0.00	37.29	4.92
1683	4237	6.586344	ACAGGTTACATGAGGATCTTACATG	58.414	40.000	3.40	18.21	44.42	3.21
1689	4243	4.263462	TGCAAACAGGTTACATGAGGATCT	60.263	41.667	3.40	0.00	34.92	2.75
1692	4246	3.146066	GTGCAAACAGGTTACATGAGGA	58.854	45.455	3.40	0.00	0.00	3.71
1696	4250	1.685302	GCGTGCAAACAGGTTACATG	58.315	50.000	0.00	0.00	34.13	3.21
1835	4399	1.071471	CACCTTCTCCACGTTGGCT	59.929	57.895	0.00	0.00	37.47	4.75
2301	4865	7.658167	TCAATAAACGAACCACTGAGAATTGTA	59.342	33.333	0.00	0.00	0.00	2.41
2302	4866	6.485313	TCAATAAACGAACCACTGAGAATTGT	59.515	34.615	0.00	0.00	0.00	2.71
2303	4867	6.898041	TCAATAAACGAACCACTGAGAATTG	58.102	36.000	0.00	0.00	0.00	2.32
2304	4868	7.687941	ATCAATAAACGAACCACTGAGAATT	57.312	32.000	0.00	0.00	0.00	2.17
2305	4869	7.687941	AATCAATAAACGAACCACTGAGAAT	57.312	32.000	0.00	0.00	0.00	2.40
2389	4958	2.034879	CGCCAGTCAGGTCGCAAAT	61.035	57.895	0.00	0.00	40.61	2.32
2392	4961	3.356639	GATCGCCAGTCAGGTCGCA	62.357	63.158	0.00	0.00	40.61	5.10
2399	4968	1.893137	ACTTACACAGATCGCCAGTCA	59.107	47.619	0.00	0.00	0.00	3.41
2409	4978	4.499188	CGTTCTTCAGTCCACTTACACAGA	60.499	45.833	0.00	0.00	0.00	3.41
2422	4991	6.292919	GCAGTACAAATTTCTCGTTCTTCAGT	60.293	38.462	0.00	0.00	0.00	3.41
2432	5001	7.173390	AGTCCAACTTAGCAGTACAAATTTCTC	59.827	37.037	0.00	0.00	30.68	2.87
2467	5039	5.894715	AGATATAGATTCTCCCCTCCAGT	57.105	43.478	0.00	0.00	0.00	4.00
2468	5040	7.825709	AGATAGATATAGATTCTCCCCTCCAG	58.174	42.308	0.00	0.00	0.00	3.86
2469	5041	7.795588	AGATAGATATAGATTCTCCCCTCCA	57.204	40.000	0.00	0.00	0.00	3.86
2484	5056	7.344913	CGGGGTAACACCTAGTAGATAGATAT	58.655	42.308	0.00	0.00	38.64	1.63
2486	5058	5.568392	CGGGGTAACACCTAGTAGATAGAT	58.432	45.833	0.00	0.00	38.64	1.98
2487	5059	4.747931	GCGGGGTAACACCTAGTAGATAGA	60.748	50.000	0.00	0.00	38.64	1.98
2488	5060	3.505293	GCGGGGTAACACCTAGTAGATAG	59.495	52.174	0.00	0.00	38.64	2.08
2489	5061	3.490348	GCGGGGTAACACCTAGTAGATA	58.510	50.000	0.00	0.00	38.64	1.98
2491	5063	1.767759	GCGGGGTAACACCTAGTAGA	58.232	55.000	0.00	0.00	38.64	2.59
2492	5064	0.383231	CGCGGGGTAACACCTAGTAG	59.617	60.000	0.00	0.00	38.64	2.57
2551	5126	9.534565	TCATATTGTCTCTTCTTTGCTATGTAC	57.465	33.333	0.00	0.00	0.00	2.90
2783	5396	6.363473	GTCTTAACACACTGCTAACACATTC	58.637	40.000	0.00	0.00	0.00	2.67
2806	5419	2.038557	ACTTTTAGATGTGAGCCCACGT	59.961	45.455	0.00	0.00	46.06	4.49
2983	6361	6.418057	TTTCACCTTTTACCTTCATGCATT	57.582	33.333	0.00	0.00	0.00	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.