AutoCloner

Multiple sequence alignment - TraesCS3D01G175700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G175700	chr3D	100.000	2865	0	0	1	2865	157376023	157378887	0.000000e+00	5291.0
1	TraesCS3D01G175700	chr3D	95.937	886	36	0	1980	2865	157418307	157419192	0.000000e+00	1437.0
2	TraesCS3D01G175700	chr3D	94.432	880	31	7	1	864	389639531	389640408	0.000000e+00	1338.0
3	TraesCS3D01G175700	chr3D	92.316	898	57	2	1980	2865	30633542	30632645	0.000000e+00	1266.0
4	TraesCS3D01G175700	chr3D	91.928	892	57	5	1980	2862	201727424	201728309	0.000000e+00	1234.0
5	TraesCS3D01G175700	chr3D	86.111	252	22	9	918	1164	157371487	157371730	2.830000e-65	259.0
6	TraesCS3D01G175700	chr3B	91.755	1128	43	15	865	1966	228671597	228672700	0.000000e+00	1522.0
7	TraesCS3D01G175700	chr6D	93.973	896	40	4	1979	2862	134811881	134812774	0.000000e+00	1343.0
8	TraesCS3D01G175700	chr6D	93.743	895	44	2	1980	2862	48557447	48558341	0.000000e+00	1332.0
9	TraesCS3D01G175700	chr6D	93.267	906	46	5	1970	2862	134417682	134418585	0.000000e+00	1321.0
10	TraesCS3D01G175700	chr5D	92.754	897	50	4	1980	2862	203936975	203937870	0.000000e+00	1282.0
11	TraesCS3D01G175700	chr5D	92.849	881	34	8	1	864	366901391	366902259	0.000000e+00	1251.0
12	TraesCS3D01G175700	chr5D	84.741	793	58	24	867	1630	520163444	520164202	0.000000e+00	736.0
13	TraesCS3D01G175700	chr5D	93.277	238	16	0	1396	1633	520133742	520133979	4.540000e-93	351.0
14	TraesCS3D01G175700	chr5D	86.498	237	21	7	902	1135	520133118	520133346	1.700000e-62	250.0
15	TraesCS3D01G175700	chr2D	92.291	895	57	2	1980	2862	556965837	556966731	0.000000e+00	1260.0
16	TraesCS3D01G175700	chr2D	85.053	475	50	7	1	458	466447981	466447511	5.590000e-127	464.0
17	TraesCS3D01G175700	chr1D	94.396	803	45	0	1980	2782	273650437	273649635	0.000000e+00	1234.0
18	TraesCS3D01G175700	chr5A	91.676	889	71	2	1980	2865	317278302	317277414	0.000000e+00	1229.0
19	TraesCS3D01G175700	chr5A	85.879	779	49	22	865	1624	647445458	647446194	0.000000e+00	773.0
20	TraesCS3D01G175700	chr5A	93.697	238	15	0	1396	1633	633284017	633284254	9.760000e-95	357.0
21	TraesCS3D01G175700	chr5A	92.857	238	17	0	1396	1633	647370650	647370887	2.110000e-91	346.0
22	TraesCS3D01G175700	chr1B	88.419	898	91	3	1980	2865	200910317	200909421	0.000000e+00	1070.0
23	TraesCS3D01G175700	chr2B	88.724	878	78	10	3	863	713968542	713969415	0.000000e+00	1053.0
24	TraesCS3D01G175700	chr2B	87.452	789	74	20	81	864	170416880	170416112	0.000000e+00	885.0
25	TraesCS3D01G175700	chr7B	86.329	907	77	27	1	864	451356729	451355827	0.000000e+00	944.0
26	TraesCS3D01G175700	chr6B	89.877	731	52	6	2144	2862	146990572	146991292	0.000000e+00	920.0
27	TraesCS3D01G175700	chr6B	83.184	892	112	26	1	865	120806760	120805880	0.000000e+00	782.0
28	TraesCS3D01G175700	chr6B	83.654	416	40	9	1	392	47151451	47151040	1.620000e-97	366.0
29	TraesCS3D01G175700	chr4A	86.220	820	70	24	75	861	614547526	614548335	0.000000e+00	848.0
30	TraesCS3D01G175700	chr3A	91.304	621	38	9	2255	2862	611107079	611107696	0.000000e+00	833.0
31	TraesCS3D01G175700	chr3A	83.224	608	87	12	266	863	391496976	391496374	6.980000e-151	544.0
32	TraesCS3D01G175700	chr3A	93.603	297	10	2	865	1161	170989727	170989440	4.380000e-118	435.0
33	TraesCS3D01G175700	chr3A	97.425	233	6	0	1399	1631	170984089	170983857	5.750000e-107	398.0
34	TraesCS3D01G175700	chr3A	93.697	238	12	2	1396	1633	170993128	170992894	1.260000e-93	353.0
35	TraesCS3D01G175700	chr3A	94.253	87	5	0	1310	1396	170989432	170989346	1.790000e-27	134.0
36	TraesCS3D01G175700	chr3A	93.651	63	2	1	1919	1981	170983697	170983637	3.040000e-15	93.5
37	TraesCS3D01G175700	chr5B	79.956	903	131	30	1	864	35512652	35513543	1.130000e-173	619.0
38	TraesCS3D01G175700	chr5B	88.235	272	26	4	865	1135	635907710	635907976	1.280000e-83	320.0
39	TraesCS3D01G175700	chr5B	92.893	197	11	1	1437	1633	635909051	635909244	1.680000e-72	283.0
40	TraesCS3D01G175700	chr5B	88.341	223	18	4	911	1131	655204376	655204592	7.870000e-66	261.0
41	TraesCS3D01G175700	chr5B	87.387	222	17	6	902	1120	655150838	655151051	7.930000e-61	244.0
42	TraesCS3D01G175700	chr5B	91.200	125	8	3	1	123	646350781	646350904	1.770000e-37	167.0
43	TraesCS3D01G175700	chr4B	82.548	785	49	40	867	1633	496286150	496285436	6.790000e-171	610.0
44	TraesCS3D01G175700	chr4B	87.500	72	1	3	1918	1981	496285360	496285289	3.060000e-10	76.8
45	TraesCS3D01G175700	chr6A	80.645	341	37	16	1	334	17038916	17039234	1.330000e-58	237.0
46	TraesCS3D01G175700	chr1A	84.699	183	14	6	1	174	98281628	98281805	1.360000e-38	171.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G175700	chr3D	157376023	157378887	2864	False	5291.000000	5291	100.0000	1	2865	1	chr3D.!!$F2	2864
1	TraesCS3D01G175700	chr3D	157418307	157419192	885	False	1437.000000	1437	95.9370	1980	2865	1	chr3D.!!$F3	885
2	TraesCS3D01G175700	chr3D	389639531	389640408	877	False	1338.000000	1338	94.4320	1	864	1	chr3D.!!$F5	863
3	TraesCS3D01G175700	chr3D	30632645	30633542	897	True	1266.000000	1266	92.3160	1980	2865	1	chr3D.!!$R1	885
4	TraesCS3D01G175700	chr3D	201727424	201728309	885	False	1234.000000	1234	91.9280	1980	2862	1	chr3D.!!$F4	882
5	TraesCS3D01G175700	chr3B	228671597	228672700	1103	False	1522.000000	1522	91.7550	865	1966	1	chr3B.!!$F1	1101
6	TraesCS3D01G175700	chr6D	134811881	134812774	893	False	1343.000000	1343	93.9730	1979	2862	1	chr6D.!!$F3	883
7	TraesCS3D01G175700	chr6D	48557447	48558341	894	False	1332.000000	1332	93.7430	1980	2862	1	chr6D.!!$F1	882
8	TraesCS3D01G175700	chr6D	134417682	134418585	903	False	1321.000000	1321	93.2670	1970	2862	1	chr6D.!!$F2	892
9	TraesCS3D01G175700	chr5D	203936975	203937870	895	False	1282.000000	1282	92.7540	1980	2862	1	chr5D.!!$F1	882
10	TraesCS3D01G175700	chr5D	366901391	366902259	868	False	1251.000000	1251	92.8490	1	864	1	chr5D.!!$F2	863
11	TraesCS3D01G175700	chr5D	520163444	520164202	758	False	736.000000	736	84.7410	867	1630	1	chr5D.!!$F3	763
12	TraesCS3D01G175700	chr5D	520133118	520133979	861	False	300.500000	351	89.8875	902	1633	2	chr5D.!!$F4	731
13	TraesCS3D01G175700	chr2D	556965837	556966731	894	False	1260.000000	1260	92.2910	1980	2862	1	chr2D.!!$F1	882
14	TraesCS3D01G175700	chr1D	273649635	273650437	802	True	1234.000000	1234	94.3960	1980	2782	1	chr1D.!!$R1	802
15	TraesCS3D01G175700	chr5A	317277414	317278302	888	True	1229.000000	1229	91.6760	1980	2865	1	chr5A.!!$R1	885
16	TraesCS3D01G175700	chr5A	647445458	647446194	736	False	773.000000	773	85.8790	865	1624	1	chr5A.!!$F3	759
17	TraesCS3D01G175700	chr1B	200909421	200910317	896	True	1070.000000	1070	88.4190	1980	2865	1	chr1B.!!$R1	885
18	TraesCS3D01G175700	chr2B	713968542	713969415	873	False	1053.000000	1053	88.7240	3	863	1	chr2B.!!$F1	860
19	TraesCS3D01G175700	chr2B	170416112	170416880	768	True	885.000000	885	87.4520	81	864	1	chr2B.!!$R1	783
20	TraesCS3D01G175700	chr7B	451355827	451356729	902	True	944.000000	944	86.3290	1	864	1	chr7B.!!$R1	863
21	TraesCS3D01G175700	chr6B	146990572	146991292	720	False	920.000000	920	89.8770	2144	2862	1	chr6B.!!$F1	718
22	TraesCS3D01G175700	chr6B	120805880	120806760	880	True	782.000000	782	83.1840	1	865	1	chr6B.!!$R2	864
23	TraesCS3D01G175700	chr4A	614547526	614548335	809	False	848.000000	848	86.2200	75	861	1	chr4A.!!$F1	786
24	TraesCS3D01G175700	chr3A	611107079	611107696	617	False	833.000000	833	91.3040	2255	2862	1	chr3A.!!$F1	607
25	TraesCS3D01G175700	chr3A	391496374	391496976	602	True	544.000000	544	83.2240	266	863	1	chr3A.!!$R1	597
26	TraesCS3D01G175700	chr3A	170989346	170993128	3782	True	307.333333	435	93.8510	865	1633	3	chr3A.!!$R3	768
27	TraesCS3D01G175700	chr5B	35512652	35513543	891	False	619.000000	619	79.9560	1	864	1	chr5B.!!$F1	863
28	TraesCS3D01G175700	chr5B	635907710	635909244	1534	False	301.500000	320	90.5640	865	1633	2	chr5B.!!$F5	768
29	TraesCS3D01G175700	chr4B	496285289	496286150	861	True	343.400000	610	85.0240	867	1981	2	chr4B.!!$R1	1114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
871	3409	0.756903	TGCTATTTACTCCCTCCGGC	59.243	55.0	0.0	0.0	0.0	6.13	F
1560	5073	0.036306	CTACAACGGCAACTTCCCCT	59.964	55.0	0.0	0.0	0.0	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1717	5230	0.246086	CCTTGCTTGAGCGACTCTCT	59.754	55.00	8.07	0.0	45.83	3.10	R
2782	6332	3.319405	TGGCGGAAACTTTGATGCTTTTA	59.681	39.13	0.00	0.0	0.00	1.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
158	167	1.972198	TCGCCCAGAGAAACGATGT	59.028	52.632	0.00	0.00	0.00	3.06
168	207	2.014093	GAAACGATGTCGGCAGCTCG	62.014	60.000	11.21	11.21	44.95	5.03
211	250	4.388499	GGCCGCCTCGTTCCTCAA	62.388	66.667	0.71	0.00	0.00	3.02
424	527	2.563050	CTTGCTCCTCGGCATCACGA	62.563	60.000	0.00	0.00	42.09	4.35
688	798	5.929415	AGTCAAACAAAACGGTCAAACAAAT	59.071	32.000	0.00	0.00	0.00	2.32
737	847	7.081349	CCTGTCATAAAACAGTTTAAATCGCA	58.919	34.615	0.00	0.00	44.22	5.10
871	3409	0.756903	TGCTATTTACTCCCTCCGGC	59.243	55.000	0.00	0.00	0.00	6.13
982	3528	3.967335	CGCCGATCGACTCCTCCC	61.967	72.222	18.66	0.00	41.67	4.30
1145	3719	1.372582	GAATCATCAGCAAGGACGCA	58.627	50.000	0.00	0.00	0.00	5.24
1215	3789	4.794439	CCATGCCGTCTGCGTCGA	62.794	66.667	0.00	0.00	45.60	4.20
1217	3791	4.050934	ATGCCGTCTGCGTCGACA	62.051	61.111	17.16	0.00	45.60	4.35
1280	3959	1.076677	ACGGGAGAGGTTACCAAGAGA	59.923	52.381	3.51	0.00	0.00	3.10
1290	3969	1.429930	TACCAAGAGAAGGTGCACCA	58.570	50.000	36.39	10.00	40.26	4.17
1334	4073	1.953231	CTCCATCTCGAGCTGCCACA	61.953	60.000	10.79	0.00	0.00	4.17
1336	4075	1.088340	CCATCTCGAGCTGCCACAAG	61.088	60.000	10.79	0.00	0.00	3.16
1355	4133	1.212229	GGAGACGTCGACCCAAGAC	59.788	63.158	19.22	0.00	35.41	3.01
1362	4140	1.361271	TCGACCCAAGACACGACAC	59.639	57.895	0.00	0.00	0.00	3.67
1560	5073	0.036306	CTACAACGGCAACTTCCCCT	59.964	55.000	0.00	0.00	0.00	4.79
1640	5153	2.312722	TCGTCGAGAGTTCCTAGGAG	57.687	55.000	12.26	0.00	0.00	3.69
1641	5154	0.658897	CGTCGAGAGTTCCTAGGAGC	59.341	60.000	17.42	17.42	0.00	4.70
1642	5155	1.744456	CGTCGAGAGTTCCTAGGAGCT	60.744	57.143	26.59	26.59	38.38	4.09
1663	5176	2.028112	TGCTAAGGCGTTCTGATCAACT	60.028	45.455	0.00	0.00	42.25	3.16
1709	5222	3.055530	GGAAGCCAGAGAGATTCAGAACA	60.056	47.826	0.00	0.00	0.00	3.18
1711	5224	2.500910	AGCCAGAGAGATTCAGAACAGG	59.499	50.000	0.00	0.00	0.00	4.00
1712	5225	2.903798	CCAGAGAGATTCAGAACAGGC	58.096	52.381	0.00	0.00	0.00	4.85
1714	5227	1.836802	AGAGAGATTCAGAACAGGCCC	59.163	52.381	0.00	0.00	0.00	5.80
1715	5228	1.836802	GAGAGATTCAGAACAGGCCCT	59.163	52.381	0.00	0.00	0.00	5.19
1716	5229	2.238395	GAGAGATTCAGAACAGGCCCTT	59.762	50.000	0.00	0.00	0.00	3.95
1717	5230	3.452627	GAGAGATTCAGAACAGGCCCTTA	59.547	47.826	0.00	0.00	0.00	2.69
1718	5231	3.454082	AGAGATTCAGAACAGGCCCTTAG	59.546	47.826	0.00	0.00	0.00	2.18
1794	5307	4.077822	TGTAAACCACACATGATGCATCA	58.922	39.130	30.47	30.47	34.95	3.07
1801	5314	3.375922	CACACATGATGCATCAAGCTACA	59.624	43.478	31.79	8.99	45.94	2.74
1802	5315	3.626217	ACACATGATGCATCAAGCTACAG	59.374	43.478	31.79	18.70	45.94	2.74
1803	5316	3.626217	CACATGATGCATCAAGCTACAGT	59.374	43.478	31.79	17.73	45.94	3.55
1804	5317	3.875727	ACATGATGCATCAAGCTACAGTC	59.124	43.478	31.79	0.64	45.94	3.51
1861	5374	3.928727	ACAATGCACCAATTCAGAGTG	57.071	42.857	0.00	0.00	34.58	3.51
1873	5386	2.738013	TCAGAGTGTCAGACTGCATG	57.262	50.000	1.31	0.00	33.83	4.06
1882	5395	0.617413	CAGACTGCATGGAAGGAGGT	59.383	55.000	0.00	0.00	0.00	3.85
1894	5407	3.139397	TGGAAGGAGGTTTTGGAAGCTTA	59.861	43.478	0.00	0.00	43.27	3.09
1993	5524	1.819903	GCCAATGTTTAACGCCCCTAA	59.180	47.619	0.00	0.00	0.00	2.69
2072	5604	5.348164	TCGCGAAAACTCATCTCATATTCA	58.652	37.500	6.20	0.00	0.00	2.57
2111	5643	3.557228	TTTCTTTGTGGCAGGCAAAAT	57.443	38.095	0.00	0.00	35.71	1.82
2164	5696	0.617535	TCCCCAAGATCAAGCTCGGA	60.618	55.000	0.00	0.00	0.00	4.55
2172	5704	5.453339	CCAAGATCAAGCTCGGAAGGTATTA	60.453	44.000	0.00	0.00	31.54	0.98
2179	5711	4.031611	AGCTCGGAAGGTATTAGTTCCTT	58.968	43.478	0.00	0.00	45.35	3.36
2279	5811	7.125053	TCAAGAGAAAAACCTAACCCATTGTTT	59.875	33.333	0.00	0.00	38.42	2.83
2356	5889	7.842743	AGTAGGAACCCTTTTTCTAAGGTTTTT	59.157	33.333	0.00	0.00	42.60	1.94
2524	6057	5.235401	GTGCTAAAAAGATAGTAGCTGCTCC	59.765	44.000	7.91	1.54	40.73	4.70
2694	6229	4.992740	TGGGCAAAGCACCGGCAT	62.993	61.111	0.00	0.00	44.61	4.40
2755	6290	8.887264	ATATTACCACTACCAATTTGAAACCA	57.113	30.769	0.00	0.00	0.00	3.67
2801	6351	7.306574	GGTTCTTTAAAAGCATCAAAGTTTCCG	60.307	37.037	0.00	0.00	32.36	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
170	209	3.127533	CCTCCTTTCGCCTTGCCG	61.128	66.667	0.00	0.00	0.00	5.69
424	527	4.827087	CATGGACAGGAGCGCGCT	62.827	66.667	37.28	37.28	0.00	5.92
688	798	1.356398	GGTCCACCCCTAAACAATCCA	59.644	52.381	0.00	0.00	0.00	3.41
737	847	4.502105	AAACCCAAAACATTCCTTGCTT	57.498	36.364	0.00	0.00	0.00	3.91
871	3409	2.675423	TCGTCGGAGTGGGACTGG	60.675	66.667	0.00	0.00	32.24	4.00
982	3528	3.190738	TTGTGGTTGCGGAGGAGGG	62.191	63.158	0.00	0.00	0.00	4.30
1145	3719	1.068753	CGGCTTGCTCTGGATCGAT	59.931	57.895	0.00	0.00	0.00	3.59
1334	4073	1.532316	TTGGGTCGACGTCTCCCTT	60.532	57.895	31.27	0.00	41.58	3.95
1336	4075	1.975407	TCTTGGGTCGACGTCTCCC	60.975	63.158	27.74	27.74	41.41	4.30
1355	4133	1.669115	CTCTGCCCTTGGTGTCGTG	60.669	63.158	0.00	0.00	0.00	4.35
1362	4140	2.743928	GACGTGCTCTGCCCTTGG	60.744	66.667	0.00	0.00	0.00	3.61
1560	5073	2.933401	TTCGGAATGGGTCGTCGCA	61.933	57.895	1.44	1.44	40.61	5.10
1571	5084	1.514873	GACGCGTACGGTTCGGAAT	60.515	57.895	13.97	0.00	46.04	3.01
1640	5153	0.933796	GATCAGAACGCCTTAGCAGC	59.066	55.000	0.00	0.00	39.83	5.25
1641	5154	2.299993	TGATCAGAACGCCTTAGCAG	57.700	50.000	0.00	0.00	39.83	4.24
1642	5155	2.028112	AGTTGATCAGAACGCCTTAGCA	60.028	45.455	0.00	0.00	39.83	3.49
1663	5176	1.353358	TCTAGGAACTCCAGACACGGA	59.647	52.381	0.00	0.00	41.75	4.69
1709	5222	0.753848	GAGCGACTCTCTAAGGGCCT	60.754	60.000	0.00	0.00	38.78	5.19
1711	5224	0.818296	TTGAGCGACTCTCTAAGGGC	59.182	55.000	8.07	0.00	42.38	5.19
1712	5225	1.202359	GCTTGAGCGACTCTCTAAGGG	60.202	57.143	8.07	0.00	42.38	3.95
1714	5227	2.929531	TGCTTGAGCGACTCTCTAAG	57.070	50.000	8.07	5.25	45.83	2.18
1715	5228	2.094494	CCTTGCTTGAGCGACTCTCTAA	60.094	50.000	8.07	0.00	45.83	2.10
1716	5229	1.474478	CCTTGCTTGAGCGACTCTCTA	59.526	52.381	8.07	0.00	45.83	2.43
1717	5230	0.246086	CCTTGCTTGAGCGACTCTCT	59.754	55.000	8.07	0.00	45.83	3.10
1718	5231	0.739112	CCCTTGCTTGAGCGACTCTC	60.739	60.000	8.07	0.00	45.83	3.20
1767	5280	5.068329	TGCATCATGTGTGGTTTACAAAGAA	59.932	36.000	0.00	0.00	41.89	2.52
1794	5307	1.345741	TGCTTCTGCAGACTGTAGCTT	59.654	47.619	29.03	0.00	45.31	3.74
1838	5351	5.106038	ACACTCTGAATTGGTGCATTGTATG	60.106	40.000	0.00	0.00	34.70	2.39
1861	5374	1.406614	CCTCCTTCCATGCAGTCTGAC	60.407	57.143	3.32	0.00	0.00	3.51
1873	5386	2.294449	AGCTTCCAAAACCTCCTTCC	57.706	50.000	0.00	0.00	0.00	3.46
1882	5395	1.613255	CCTCCGCCTAAGCTTCCAAAA	60.613	52.381	0.00	0.00	36.60	2.44
1903	5422	0.608640	AGTCCTTGGAAGGCTACACG	59.391	55.000	0.01	0.00	46.06	4.49
1950	5475	2.928116	GCTAACAAACGGGCTACAGTAG	59.072	50.000	2.85	2.85	0.00	2.57
2111	5643	9.898152	CCCATTAAATTTAGCCCTTTTGATTAA	57.102	29.630	0.00	0.00	0.00	1.40
2179	5711	1.287442	TGCAATATGAGGGGCCAAAGA	59.713	47.619	4.39	0.00	0.00	2.52
2379	5912	6.903883	AGAAGACATAATGCGTTTACGATT	57.096	33.333	6.44	5.96	43.02	3.34
2524	6057	8.133627	CCAATATTGAGCATTCTTCTGTTAAGG	58.866	37.037	17.23	0.00	0.00	2.69
2602	6135	5.758296	TCTTTGCTCGTAGTTGAACTTGAAT	59.242	36.000	1.97	0.00	0.00	2.57
2782	6332	3.319405	TGGCGGAAACTTTGATGCTTTTA	59.681	39.130	0.00	0.00	0.00	1.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.