Multiple sequence alignment - TraesCS3D01G175500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G175500 chr3D 100.000 2895 0 0 1 2895 157228733 157231627 0.000000e+00 5347
1 TraesCS3D01G175500 chr3D 95.072 487 15 4 1 481 24862578 24863061 0.000000e+00 758
2 TraesCS3D01G175500 chr3D 93.608 485 20 5 1 480 557067426 557067904 0.000000e+00 713
3 TraesCS3D01G175500 chr3D 84.258 559 83 3 2226 2780 532582829 532582272 9.130000e-150 540
4 TraesCS3D01G175500 chr3D 95.652 69 1 2 2829 2895 13904521 13904453 3.050000e-20 110
5 TraesCS3D01G175500 chr3A 90.527 1858 107 30 538 2387 171128739 171126943 0.000000e+00 2392
6 TraesCS3D01G175500 chr7D 94.262 488 19 5 1 480 72844563 72844077 0.000000e+00 737
7 TraesCS3D01G175500 chr7D 95.652 69 1 2 2829 2895 627695837 627695769 3.050000e-20 110
8 TraesCS3D01G175500 chr7D 95.652 69 1 2 2829 2895 627755482 627755414 3.050000e-20 110
9 TraesCS3D01G175500 chr7D 95.652 69 1 2 2829 2895 627810664 627810596 3.050000e-20 110
10 TraesCS3D01G175500 chr7D 95.652 69 1 2 2829 2895 627952199 627952131 3.050000e-20 110
11 TraesCS3D01G175500 chr7D 95.652 69 1 2 2829 2895 628027859 628027791 3.050000e-20 110
12 TraesCS3D01G175500 chr7D 95.652 69 1 2 2829 2895 628101960 628101892 3.050000e-20 110
13 TraesCS3D01G175500 chrUn 93.648 488 17 5 1 480 68011293 68011774 0.000000e+00 717
14 TraesCS3D01G175500 chrUn 85.409 562 73 6 2227 2780 88917747 88918307 2.500000e-160 575
15 TraesCS3D01G175500 chr7A 93.089 492 20 6 1 482 18133495 18133008 0.000000e+00 708
16 TraesCS3D01G175500 chr6D 93.018 487 22 6 1 480 58666946 58667427 0.000000e+00 701
17 TraesCS3D01G175500 chr2B 91.515 495 22 10 1 481 757681374 757681862 0.000000e+00 664
18 TraesCS3D01G175500 chr2B 85.868 559 74 3 2226 2780 54344970 54344413 8.930000e-165 590
19 TraesCS3D01G175500 chr1D 91.057 492 30 9 1 480 2822965 2822476 0.000000e+00 652
20 TraesCS3D01G175500 chr1B 90.342 497 26 10 3 480 640507583 640507090 1.460000e-177 632
21 TraesCS3D01G175500 chr4D 85.918 561 70 6 2226 2780 235508776 235508219 8.930000e-165 590
22 TraesCS3D01G175500 chr5B 84.817 573 80 5 2212 2780 493190721 493191290 1.160000e-158 569
23 TraesCS3D01G175500 chr5B 90.909 77 7 0 2819 2895 567341484 567341408 1.420000e-18 104
24 TraesCS3D01G175500 chr4B 85.432 556 72 6 2231 2780 249059192 249059744 1.160000e-158 569
25 TraesCS3D01G175500 chr4A 84.919 557 81 2 2227 2780 35970243 35970799 7.010000e-156 560
26 TraesCS3D01G175500 chr2A 84.954 545 77 3 2227 2767 773373932 773374475 5.450000e-152 547
27 TraesCS3D01G175500 chr3B 84.425 565 75 9 2226 2780 704653121 704652560 7.060000e-151 544
28 TraesCS3D01G175500 chr7B 96.923 65 2 0 2831 2895 596497039 596496975 3.050000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G175500 chr3D 157228733 157231627 2894 False 5347 5347 100.000 1 2895 1 chr3D.!!$F2 2894
1 TraesCS3D01G175500 chr3D 532582272 532582829 557 True 540 540 84.258 2226 2780 1 chr3D.!!$R2 554
2 TraesCS3D01G175500 chr3A 171126943 171128739 1796 True 2392 2392 90.527 538 2387 1 chr3A.!!$R1 1849
3 TraesCS3D01G175500 chrUn 88917747 88918307 560 False 575 575 85.409 2227 2780 1 chrUn.!!$F2 553
4 TraesCS3D01G175500 chr2B 54344413 54344970 557 True 590 590 85.868 2226 2780 1 chr2B.!!$R1 554
5 TraesCS3D01G175500 chr4D 235508219 235508776 557 True 590 590 85.918 2226 2780 1 chr4D.!!$R1 554
6 TraesCS3D01G175500 chr5B 493190721 493191290 569 False 569 569 84.817 2212 2780 1 chr5B.!!$F1 568
7 TraesCS3D01G175500 chr4B 249059192 249059744 552 False 569 569 85.432 2231 2780 1 chr4B.!!$F1 549
8 TraesCS3D01G175500 chr4A 35970243 35970799 556 False 560 560 84.919 2227 2780 1 chr4A.!!$F1 553
9 TraesCS3D01G175500 chr2A 773373932 773374475 543 False 547 547 84.954 2227 2767 1 chr2A.!!$F1 540
10 TraesCS3D01G175500 chr3B 704652560 704653121 561 True 544 544 84.425 2226 2780 1 chr3B.!!$R1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 774 0.036952 ACAGATGGAAGCACACGAGG 60.037 55.0 0.0 0.0 0.0 4.63 F
1662 1665 0.240411 GAACTACGTGACCGCTGAGT 59.760 55.0 0.0 0.0 37.7 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 1717 0.028505 GACATGACATGCCATGACGC 59.971 55.0 26.34 12.34 44.98 5.19 R
2797 2821 0.034337 TAGTCCGGTGTTGTTGGCTC 59.966 55.0 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.681806 TGTGTATGTGTGAATAATTAATGGTGG 58.318 33.333 0.00 0.00 0.00 4.61
54 55 8.682710 GTGTATGTGTGAATAATTAATGGTGGT 58.317 33.333 0.00 0.00 0.00 4.16
55 56 9.249053 TGTATGTGTGAATAATTAATGGTGGTT 57.751 29.630 0.00 0.00 0.00 3.67
56 57 9.515020 GTATGTGTGAATAATTAATGGTGGTTG 57.485 33.333 0.00 0.00 0.00 3.77
57 58 7.531857 TGTGTGAATAATTAATGGTGGTTGT 57.468 32.000 0.00 0.00 0.00 3.32
58 59 7.374272 TGTGTGAATAATTAATGGTGGTTGTG 58.626 34.615 0.00 0.00 0.00 3.33
59 60 7.231519 TGTGTGAATAATTAATGGTGGTTGTGA 59.768 33.333 0.00 0.00 0.00 3.58
60 61 7.754924 GTGTGAATAATTAATGGTGGTTGTGAG 59.245 37.037 0.00 0.00 0.00 3.51
61 62 7.667635 TGTGAATAATTAATGGTGGTTGTGAGA 59.332 33.333 0.00 0.00 0.00 3.27
62 63 7.968405 GTGAATAATTAATGGTGGTTGTGAGAC 59.032 37.037 0.00 0.00 0.00 3.36
63 64 7.667635 TGAATAATTAATGGTGGTTGTGAGACA 59.332 33.333 0.00 0.00 0.00 3.41
64 65 8.593945 AATAATTAATGGTGGTTGTGAGACAT 57.406 30.769 0.00 0.00 0.00 3.06
65 66 6.916360 AATTAATGGTGGTTGTGAGACATT 57.084 33.333 0.00 0.00 33.61 2.71
66 67 5.957842 TTAATGGTGGTTGTGAGACATTC 57.042 39.130 0.00 0.00 31.71 2.67
67 68 1.877637 TGGTGGTTGTGAGACATTCG 58.122 50.000 0.00 0.00 0.00 3.34
68 69 1.414550 TGGTGGTTGTGAGACATTCGA 59.585 47.619 0.00 0.00 0.00 3.71
69 70 2.038426 TGGTGGTTGTGAGACATTCGAT 59.962 45.455 0.00 0.00 0.00 3.59
70 71 3.074412 GGTGGTTGTGAGACATTCGATT 58.926 45.455 0.00 0.00 0.00 3.34
71 72 4.250464 GGTGGTTGTGAGACATTCGATTA 58.750 43.478 0.00 0.00 0.00 1.75
72 73 4.876107 GGTGGTTGTGAGACATTCGATTAT 59.124 41.667 0.00 0.00 0.00 1.28
73 74 6.046593 GGTGGTTGTGAGACATTCGATTATA 58.953 40.000 0.00 0.00 0.00 0.98
74 75 6.706270 GGTGGTTGTGAGACATTCGATTATAT 59.294 38.462 0.00 0.00 0.00 0.86
75 76 7.870954 GGTGGTTGTGAGACATTCGATTATATA 59.129 37.037 0.00 0.00 0.00 0.86
76 77 9.424319 GTGGTTGTGAGACATTCGATTATATAT 57.576 33.333 0.00 0.00 0.00 0.86
187 188 9.923143 ATATGCATAACGTGTACAATATGTAGT 57.077 29.630 11.13 9.74 32.84 2.73
189 190 9.923143 ATGCATAACGTGTACAATATGTAGTAT 57.077 29.630 18.41 10.25 32.84 2.12
190 191 9.401873 TGCATAACGTGTACAATATGTAGTATC 57.598 33.333 18.41 7.77 32.84 2.24
191 192 9.622004 GCATAACGTGTACAATATGTAGTATCT 57.378 33.333 18.41 0.00 32.84 1.98
207 208 9.899661 ATGTAGTATCTAAAATACCAGCAAACA 57.100 29.630 0.00 0.00 0.00 2.83
208 209 9.727859 TGTAGTATCTAAAATACCAGCAAACAA 57.272 29.630 0.00 0.00 0.00 2.83
272 273 8.873186 TTAAAATTAAAACCAAACCCCAAACA 57.127 26.923 0.00 0.00 0.00 2.83
273 274 7.962995 AAAATTAAAACCAAACCCCAAACAT 57.037 28.000 0.00 0.00 0.00 2.71
274 275 7.962995 AAATTAAAACCAAACCCCAAACATT 57.037 28.000 0.00 0.00 0.00 2.71
275 276 7.962995 AATTAAAACCAAACCCCAAACATTT 57.037 28.000 0.00 0.00 0.00 2.32
276 277 9.475620 AAATTAAAACCAAACCCCAAACATTTA 57.524 25.926 0.00 0.00 0.00 1.40
277 278 8.684386 ATTAAAACCAAACCCCAAACATTTAG 57.316 30.769 0.00 0.00 0.00 1.85
278 279 5.702065 AAACCAAACCCCAAACATTTAGT 57.298 34.783 0.00 0.00 0.00 2.24
279 280 6.809976 AAACCAAACCCCAAACATTTAGTA 57.190 33.333 0.00 0.00 0.00 1.82
280 281 5.794726 ACCAAACCCCAAACATTTAGTAC 57.205 39.130 0.00 0.00 0.00 2.73
281 282 4.589798 ACCAAACCCCAAACATTTAGTACC 59.410 41.667 0.00 0.00 0.00 3.34
282 283 4.321378 CCAAACCCCAAACATTTAGTACCG 60.321 45.833 0.00 0.00 0.00 4.02
283 284 3.076079 ACCCCAAACATTTAGTACCGG 57.924 47.619 0.00 0.00 0.00 5.28
284 285 2.376181 ACCCCAAACATTTAGTACCGGT 59.624 45.455 13.98 13.98 0.00 5.28
285 286 3.181430 ACCCCAAACATTTAGTACCGGTT 60.181 43.478 15.04 0.00 0.00 4.44
286 287 3.191791 CCCCAAACATTTAGTACCGGTTG 59.808 47.826 15.04 6.22 0.00 3.77
287 288 3.191791 CCCAAACATTTAGTACCGGTTGG 59.808 47.826 15.04 10.33 42.84 3.77
298 299 3.015516 CCGGTTGGTGCTAACAACT 57.984 52.632 14.07 0.00 45.61 3.16
300 301 0.591170 CGGTTGGTGCTAACAACTGG 59.409 55.000 14.50 6.29 46.40 4.00
301 302 1.687563 GGTTGGTGCTAACAACTGGT 58.312 50.000 14.07 0.00 45.61 4.00
302 303 2.807472 CGGTTGGTGCTAACAACTGGTA 60.807 50.000 14.50 0.00 46.40 3.25
303 304 2.551032 GGTTGGTGCTAACAACTGGTAC 59.449 50.000 14.07 0.00 45.61 3.34
304 305 3.473625 GTTGGTGCTAACAACTGGTACT 58.526 45.455 9.07 0.00 43.59 2.73
305 306 3.120321 TGGTGCTAACAACTGGTACTG 57.880 47.619 0.00 0.00 33.30 2.74
306 307 2.701423 TGGTGCTAACAACTGGTACTGA 59.299 45.455 0.00 0.00 33.30 3.41
307 308 3.326588 TGGTGCTAACAACTGGTACTGAT 59.673 43.478 0.00 0.00 33.30 2.90
308 309 3.684788 GGTGCTAACAACTGGTACTGATG 59.315 47.826 0.00 0.00 36.26 3.07
309 310 3.684788 GTGCTAACAACTGGTACTGATGG 59.315 47.826 0.00 0.00 34.62 3.51
310 311 3.326588 TGCTAACAACTGGTACTGATGGT 59.673 43.478 0.00 0.00 34.62 3.55
311 312 4.202419 TGCTAACAACTGGTACTGATGGTT 60.202 41.667 0.00 0.00 34.62 3.67
312 313 4.760204 GCTAACAACTGGTACTGATGGTTT 59.240 41.667 0.00 0.00 34.62 3.27
313 314 5.935789 GCTAACAACTGGTACTGATGGTTTA 59.064 40.000 0.00 0.00 34.62 2.01
314 315 6.128363 GCTAACAACTGGTACTGATGGTTTAC 60.128 42.308 0.00 0.00 34.62 2.01
315 316 4.648651 ACAACTGGTACTGATGGTTTACC 58.351 43.478 0.00 0.00 34.62 2.85
324 325 2.432563 TGGTTTACCAGCACCCGG 59.567 61.111 0.00 0.00 42.01 5.73
325 326 2.360726 GGTTTACCAGCACCCGGG 60.361 66.667 22.25 22.25 35.64 5.73
326 327 3.060000 GTTTACCAGCACCCGGGC 61.060 66.667 24.08 7.69 0.00 6.13
327 328 4.354162 TTTACCAGCACCCGGGCC 62.354 66.667 24.08 12.72 0.00 5.80
342 343 4.664677 GCCTGACTCGTGCCACGT 62.665 66.667 17.83 0.00 43.14 4.49
343 344 2.734723 CCTGACTCGTGCCACGTG 60.735 66.667 17.83 17.30 43.14 4.49
344 345 2.734723 CTGACTCGTGCCACGTGG 60.735 66.667 30.66 30.66 43.14 4.94
345 346 3.499929 CTGACTCGTGCCACGTGGT 62.500 63.158 33.92 14.84 43.14 4.16
346 347 3.036084 GACTCGTGCCACGTGGTG 61.036 66.667 33.92 23.62 43.14 4.17
356 357 1.574428 CACGTGGTGGCACTTTAGC 59.426 57.895 18.45 0.25 0.00 3.09
357 358 1.959226 ACGTGGTGGCACTTTAGCG 60.959 57.895 18.45 15.80 34.64 4.26
358 359 2.561373 GTGGTGGCACTTTAGCGC 59.439 61.111 18.45 0.00 34.64 5.92
363 364 3.053896 GGCACTTTAGCGCCGGTT 61.054 61.111 2.29 0.00 38.82 4.44
364 365 2.479198 GCACTTTAGCGCCGGTTC 59.521 61.111 2.29 0.00 0.00 3.62
365 366 2.776072 CACTTTAGCGCCGGTTCG 59.224 61.111 2.29 0.00 0.00 3.95
366 367 2.025418 CACTTTAGCGCCGGTTCGT 61.025 57.895 2.29 0.00 0.00 3.85
367 368 2.025418 ACTTTAGCGCCGGTTCGTG 61.025 57.895 2.29 0.00 0.00 4.35
368 369 3.362851 CTTTAGCGCCGGTTCGTGC 62.363 63.158 2.29 0.00 0.00 5.34
387 388 2.573941 CCGAACCGGTAGTAAAGGAG 57.426 55.000 8.00 0.00 42.73 3.69
388 389 1.135721 CCGAACCGGTAGTAAAGGAGG 59.864 57.143 8.00 0.00 42.73 4.30
389 390 1.135721 CGAACCGGTAGTAAAGGAGGG 59.864 57.143 8.00 0.00 0.00 4.30
390 391 1.483827 GAACCGGTAGTAAAGGAGGGG 59.516 57.143 8.00 0.00 0.00 4.79
391 392 0.325954 ACCGGTAGTAAAGGAGGGGG 60.326 60.000 4.49 0.00 0.00 5.40
392 393 1.693152 CCGGTAGTAAAGGAGGGGGC 61.693 65.000 0.00 0.00 0.00 5.80
393 394 1.693152 CGGTAGTAAAGGAGGGGGCC 61.693 65.000 0.00 0.00 0.00 5.80
394 395 0.327287 GGTAGTAAAGGAGGGGGCCT 60.327 60.000 0.84 0.00 40.93 5.19
400 401 2.711315 AAGGAGGGGGCCTTTAGTC 58.289 57.895 0.84 0.00 45.85 2.59
401 402 0.121402 AAGGAGGGGGCCTTTAGTCT 59.879 55.000 0.84 0.00 45.85 3.24
402 403 0.326713 AGGAGGGGGCCTTTAGTCTC 60.327 60.000 0.84 1.04 33.46 3.36
403 404 1.346479 GGAGGGGGCCTTTAGTCTCC 61.346 65.000 0.84 6.75 31.76 3.71
404 405 0.620700 GAGGGGGCCTTTAGTCTCCA 60.621 60.000 0.84 0.00 31.76 3.86
405 406 0.914902 AGGGGGCCTTTAGTCTCCAC 60.915 60.000 0.84 0.00 0.00 4.02
406 407 0.914902 GGGGGCCTTTAGTCTCCACT 60.915 60.000 0.84 0.00 36.55 4.00
407 408 0.542333 GGGGCCTTTAGTCTCCACTC 59.458 60.000 0.84 0.00 33.62 3.51
408 409 1.574263 GGGCCTTTAGTCTCCACTCT 58.426 55.000 0.84 0.00 33.62 3.24
409 410 1.909986 GGGCCTTTAGTCTCCACTCTT 59.090 52.381 0.84 0.00 33.62 2.85
410 411 2.306219 GGGCCTTTAGTCTCCACTCTTT 59.694 50.000 0.84 0.00 33.62 2.52
411 412 3.518303 GGGCCTTTAGTCTCCACTCTTTA 59.482 47.826 0.84 0.00 33.62 1.85
412 413 4.383226 GGGCCTTTAGTCTCCACTCTTTAG 60.383 50.000 0.84 0.00 33.62 1.85
413 414 4.223255 GGCCTTTAGTCTCCACTCTTTAGT 59.777 45.833 0.00 0.00 35.91 2.24
423 424 3.034721 CACTCTTTAGTGCCGGTTACA 57.965 47.619 1.90 0.00 46.28 2.41
424 425 2.993899 CACTCTTTAGTGCCGGTTACAG 59.006 50.000 1.90 0.00 46.28 2.74
425 426 2.895404 ACTCTTTAGTGCCGGTTACAGA 59.105 45.455 1.90 1.19 33.57 3.41
426 427 3.322828 ACTCTTTAGTGCCGGTTACAGAA 59.677 43.478 1.90 0.00 33.57 3.02
427 428 3.656559 TCTTTAGTGCCGGTTACAGAAC 58.343 45.455 1.90 0.00 34.56 3.01
428 429 7.752780 ACTCTTTAGTGCCGGTTACAGAACC 62.753 48.000 1.90 0.00 42.39 3.62
436 437 2.460757 GGTTACAGAACCGGCACTAA 57.539 50.000 0.00 0.00 45.73 2.24
437 438 2.769893 GGTTACAGAACCGGCACTAAA 58.230 47.619 0.00 0.00 45.73 1.85
438 439 2.740447 GGTTACAGAACCGGCACTAAAG 59.260 50.000 0.00 0.00 45.73 1.85
439 440 2.740447 GTTACAGAACCGGCACTAAAGG 59.260 50.000 0.00 0.00 0.00 3.11
440 441 0.605589 ACAGAACCGGCACTAAAGGC 60.606 55.000 0.00 0.00 0.00 4.35
447 448 2.776659 GGCACTAAAGGCCCTTACG 58.223 57.895 0.00 0.00 45.87 3.18
448 449 0.251073 GGCACTAAAGGCCCTTACGA 59.749 55.000 0.00 0.00 45.87 3.43
449 450 1.339342 GGCACTAAAGGCCCTTACGAA 60.339 52.381 0.00 0.00 45.87 3.85
450 451 1.736126 GCACTAAAGGCCCTTACGAAC 59.264 52.381 0.00 0.00 0.00 3.95
451 452 2.353323 CACTAAAGGCCCTTACGAACC 58.647 52.381 0.00 0.00 0.00 3.62
452 453 1.066645 ACTAAAGGCCCTTACGAACCG 60.067 52.381 0.00 0.00 0.00 4.44
453 454 1.205417 CTAAAGGCCCTTACGAACCGA 59.795 52.381 0.00 0.00 0.00 4.69
454 455 0.321034 AAAGGCCCTTACGAACCGAC 60.321 55.000 0.00 0.00 0.00 4.79
455 456 2.496828 AAGGCCCTTACGAACCGACG 62.497 60.000 0.00 0.00 39.31 5.12
457 458 1.373371 GCCCTTACGAACCGACGTT 60.373 57.895 0.00 0.00 44.14 3.99
458 459 0.109319 GCCCTTACGAACCGACGTTA 60.109 55.000 0.00 0.00 44.14 3.18
459 460 1.668628 GCCCTTACGAACCGACGTTAA 60.669 52.381 0.00 0.00 44.14 2.01
460 461 2.671596 CCCTTACGAACCGACGTTAAA 58.328 47.619 0.00 0.00 44.14 1.52
461 462 2.663119 CCCTTACGAACCGACGTTAAAG 59.337 50.000 0.00 0.00 44.14 1.85
462 463 2.091122 CCTTACGAACCGACGTTAAAGC 59.909 50.000 0.00 0.00 44.14 3.51
463 464 1.696988 TACGAACCGACGTTAAAGCC 58.303 50.000 0.00 0.00 44.14 4.35
464 465 0.945743 ACGAACCGACGTTAAAGCCC 60.946 55.000 0.00 0.00 44.14 5.19
465 466 0.945265 CGAACCGACGTTAAAGCCCA 60.945 55.000 0.00 0.00 30.30 5.36
466 467 0.794473 GAACCGACGTTAAAGCCCAG 59.206 55.000 0.00 0.00 30.30 4.45
467 468 0.107268 AACCGACGTTAAAGCCCAGT 59.893 50.000 0.00 0.00 0.00 4.00
468 469 0.107268 ACCGACGTTAAAGCCCAGTT 59.893 50.000 0.00 0.00 0.00 3.16
469 470 0.794473 CCGACGTTAAAGCCCAGTTC 59.206 55.000 0.00 0.00 0.00 3.01
470 471 1.607251 CCGACGTTAAAGCCCAGTTCT 60.607 52.381 0.00 0.00 0.00 3.01
471 472 1.459592 CGACGTTAAAGCCCAGTTCTG 59.540 52.381 0.00 0.00 0.00 3.02
472 473 1.197036 GACGTTAAAGCCCAGTTCTGC 59.803 52.381 0.00 0.00 0.00 4.26
473 474 1.234821 CGTTAAAGCCCAGTTCTGCA 58.765 50.000 0.00 0.00 0.00 4.41
474 475 1.069227 CGTTAAAGCCCAGTTCTGCAC 60.069 52.381 0.00 0.00 0.00 4.57
475 476 2.230660 GTTAAAGCCCAGTTCTGCACT 58.769 47.619 0.00 0.00 35.35 4.40
476 477 3.408634 GTTAAAGCCCAGTTCTGCACTA 58.591 45.455 0.00 0.00 32.76 2.74
477 478 2.191128 AAAGCCCAGTTCTGCACTAG 57.809 50.000 0.00 0.00 32.76 2.57
478 479 1.059913 AAGCCCAGTTCTGCACTAGT 58.940 50.000 0.00 0.00 32.76 2.57
479 480 0.322975 AGCCCAGTTCTGCACTAGTG 59.677 55.000 18.93 18.93 32.76 2.74
480 481 0.321671 GCCCAGTTCTGCACTAGTGA 59.678 55.000 27.08 10.55 32.76 3.41
481 482 1.065854 GCCCAGTTCTGCACTAGTGAT 60.066 52.381 27.08 1.46 32.76 3.06
482 483 2.898705 CCCAGTTCTGCACTAGTGATC 58.101 52.381 27.08 10.22 32.76 2.92
483 484 2.499289 CCCAGTTCTGCACTAGTGATCT 59.501 50.000 27.08 12.33 32.76 2.75
484 485 3.055530 CCCAGTTCTGCACTAGTGATCTT 60.056 47.826 27.08 3.32 32.76 2.40
485 486 3.931468 CCAGTTCTGCACTAGTGATCTTG 59.069 47.826 27.08 14.44 32.76 3.02
486 487 3.370366 CAGTTCTGCACTAGTGATCTTGC 59.630 47.826 27.08 10.39 32.76 4.01
487 488 3.007290 AGTTCTGCACTAGTGATCTTGCA 59.993 43.478 27.08 14.55 42.60 4.08
488 489 3.900966 TCTGCACTAGTGATCTTGCAT 57.099 42.857 27.08 0.00 43.74 3.96
489 490 3.790091 TCTGCACTAGTGATCTTGCATC 58.210 45.455 27.08 5.76 43.74 3.91
490 491 2.871022 CTGCACTAGTGATCTTGCATCC 59.129 50.000 27.08 5.03 43.74 3.51
491 492 1.863454 GCACTAGTGATCTTGCATCCG 59.137 52.381 27.08 0.00 34.97 4.18
492 493 2.477825 CACTAGTGATCTTGCATCCGG 58.522 52.381 18.45 0.00 0.00 5.14
493 494 2.111384 ACTAGTGATCTTGCATCCGGT 58.889 47.619 0.00 0.00 0.00 5.28
494 495 2.159043 ACTAGTGATCTTGCATCCGGTG 60.159 50.000 0.00 0.00 0.00 4.94
495 496 0.904649 AGTGATCTTGCATCCGGTGA 59.095 50.000 0.00 0.00 0.00 4.02
496 497 1.009829 GTGATCTTGCATCCGGTGAC 58.990 55.000 0.00 0.00 0.00 3.67
497 498 0.107703 TGATCTTGCATCCGGTGACC 60.108 55.000 0.00 0.00 0.00 4.02
498 499 0.179000 GATCTTGCATCCGGTGACCT 59.821 55.000 0.00 0.00 0.00 3.85
499 500 1.412710 GATCTTGCATCCGGTGACCTA 59.587 52.381 0.00 0.00 0.00 3.08
500 501 1.496060 TCTTGCATCCGGTGACCTAT 58.504 50.000 0.00 0.00 0.00 2.57
501 502 1.138859 TCTTGCATCCGGTGACCTATG 59.861 52.381 0.00 4.76 0.00 2.23
502 503 0.463654 TTGCATCCGGTGACCTATGC 60.464 55.000 23.79 23.79 39.44 3.14
503 504 1.146041 GCATCCGGTGACCTATGCA 59.854 57.895 24.92 0.00 39.08 3.96
504 505 1.160329 GCATCCGGTGACCTATGCAC 61.160 60.000 24.92 1.85 39.08 4.57
509 510 3.305314 GTGACCTATGCACCCGGA 58.695 61.111 0.73 0.00 0.00 5.14
510 511 1.830145 GTGACCTATGCACCCGGAT 59.170 57.895 0.73 0.00 0.00 4.18
511 512 1.045407 GTGACCTATGCACCCGGATA 58.955 55.000 0.73 0.00 0.00 2.59
512 513 1.000955 GTGACCTATGCACCCGGATAG 59.999 57.143 0.73 1.37 41.82 2.08
513 514 0.037232 GACCTATGCACCCGGATAGC 60.037 60.000 0.73 4.08 41.06 2.97
514 515 0.471971 ACCTATGCACCCGGATAGCT 60.472 55.000 0.73 0.00 41.06 3.32
515 516 0.247736 CCTATGCACCCGGATAGCTC 59.752 60.000 0.73 0.00 41.06 4.09
516 517 1.261480 CTATGCACCCGGATAGCTCT 58.739 55.000 0.73 0.00 36.84 4.09
517 518 2.447443 CTATGCACCCGGATAGCTCTA 58.553 52.381 0.73 0.00 36.84 2.43
518 519 0.969894 ATGCACCCGGATAGCTCTAC 59.030 55.000 0.73 0.00 0.00 2.59
519 520 0.106167 TGCACCCGGATAGCTCTACT 60.106 55.000 0.73 0.00 0.00 2.57
520 521 1.041437 GCACCCGGATAGCTCTACTT 58.959 55.000 0.73 0.00 0.00 2.24
521 522 2.236766 GCACCCGGATAGCTCTACTTA 58.763 52.381 0.73 0.00 0.00 2.24
522 523 2.229302 GCACCCGGATAGCTCTACTTAG 59.771 54.545 0.73 0.00 0.00 2.18
523 524 3.752665 CACCCGGATAGCTCTACTTAGA 58.247 50.000 0.73 0.00 0.00 2.10
524 525 3.502979 CACCCGGATAGCTCTACTTAGAC 59.497 52.174 0.73 0.00 0.00 2.59
525 526 3.137913 ACCCGGATAGCTCTACTTAGACA 59.862 47.826 0.73 0.00 0.00 3.41
526 527 3.502979 CCCGGATAGCTCTACTTAGACAC 59.497 52.174 0.73 0.00 0.00 3.67
527 528 3.186817 CCGGATAGCTCTACTTAGACACG 59.813 52.174 0.00 0.00 0.00 4.49
528 529 3.364167 CGGATAGCTCTACTTAGACACGC 60.364 52.174 0.00 0.00 0.00 5.34
529 530 3.058085 GGATAGCTCTACTTAGACACGCC 60.058 52.174 0.00 0.00 0.00 5.68
530 531 1.104630 AGCTCTACTTAGACACGCCC 58.895 55.000 0.00 0.00 0.00 6.13
531 532 0.102663 GCTCTACTTAGACACGCCCC 59.897 60.000 0.00 0.00 0.00 5.80
532 533 1.765230 CTCTACTTAGACACGCCCCT 58.235 55.000 0.00 0.00 0.00 4.79
533 534 1.405821 CTCTACTTAGACACGCCCCTG 59.594 57.143 0.00 0.00 0.00 4.45
534 535 0.460311 CTACTTAGACACGCCCCTGG 59.540 60.000 0.00 0.00 0.00 4.45
535 536 1.610554 TACTTAGACACGCCCCTGGC 61.611 60.000 0.00 0.00 46.75 4.85
548 549 1.338020 CCCCTGGCGCTCATTAAATTC 59.662 52.381 7.64 0.00 0.00 2.17
549 550 1.002468 CCCTGGCGCTCATTAAATTCG 60.002 52.381 7.64 0.00 0.00 3.34
550 551 1.597937 CCTGGCGCTCATTAAATTCGC 60.598 52.381 7.64 0.00 44.39 4.70
551 552 1.331756 CTGGCGCTCATTAAATTCGCT 59.668 47.619 7.64 0.00 44.51 4.93
562 564 5.696724 TCATTAAATTCGCTAGCTAAGAGCC 59.303 40.000 13.93 0.00 43.77 4.70
563 565 2.141535 AATTCGCTAGCTAAGAGCCG 57.858 50.000 13.93 0.00 43.77 5.52
602 604 0.547712 AAGGGCAGGGACAGAAGCTA 60.548 55.000 0.00 0.00 0.00 3.32
615 617 2.229062 CAGAAGCTACTCGTCCTGACAA 59.771 50.000 0.00 0.00 0.00 3.18
618 620 1.071567 GCTACTCGTCCTGACAACGC 61.072 60.000 0.00 0.00 39.90 4.84
620 622 2.791396 TACTCGTCCTGACAACGCGC 62.791 60.000 5.73 0.00 39.90 6.86
635 637 1.997606 ACGCGCGCTCTTATAAAAAGT 59.002 42.857 32.58 11.89 0.00 2.66
636 638 2.222729 ACGCGCGCTCTTATAAAAAGTG 60.223 45.455 32.58 10.48 0.00 3.16
637 639 2.028763 CGCGCGCTCTTATAAAAAGTGA 59.971 45.455 30.48 0.00 0.00 3.41
638 640 3.343129 GCGCGCTCTTATAAAAAGTGAC 58.657 45.455 26.67 0.00 0.00 3.67
639 641 3.062234 GCGCGCTCTTATAAAAAGTGACT 59.938 43.478 26.67 0.00 0.00 3.41
640 642 4.569029 CGCGCTCTTATAAAAAGTGACTG 58.431 43.478 5.56 0.00 0.00 3.51
652 654 2.961526 AGTGACTGTGACTGAACGTT 57.038 45.000 0.00 0.00 0.00 3.99
653 655 3.247006 AGTGACTGTGACTGAACGTTT 57.753 42.857 0.46 0.00 0.00 3.60
657 659 5.640357 AGTGACTGTGACTGAACGTTTAAAA 59.360 36.000 0.46 0.00 0.00 1.52
703 706 7.322664 TCCCATTTTTCTTATTCACATGCTTC 58.677 34.615 0.00 0.00 0.00 3.86
707 710 9.414295 CATTTTTCTTATTCACATGCTTCTGAA 57.586 29.630 0.00 0.00 0.00 3.02
721 724 6.053632 TGCTTCTGAAGATCCTGTAAATCA 57.946 37.500 21.06 2.14 0.00 2.57
724 727 7.448161 TGCTTCTGAAGATCCTGTAAATCAAAA 59.552 33.333 21.06 0.00 0.00 2.44
759 762 5.273674 TCTTTGCTAGATCAGACAGATGG 57.726 43.478 0.00 0.00 37.00 3.51
771 774 0.036952 ACAGATGGAAGCACACGAGG 60.037 55.000 0.00 0.00 0.00 4.63
822 825 1.173043 TAGGCAAAAGCAACCGGATG 58.827 50.000 9.46 8.33 0.00 3.51
823 826 1.079888 GGCAAAAGCAACCGGATGG 60.080 57.895 9.46 0.00 42.84 3.51
833 836 4.473520 CCGGATGGTTGGCTCGCT 62.474 66.667 0.00 0.00 0.00 4.93
834 837 2.499205 CGGATGGTTGGCTCGCTA 59.501 61.111 0.00 0.00 0.00 4.26
836 839 0.317160 CGGATGGTTGGCTCGCTATA 59.683 55.000 0.00 0.00 0.00 1.31
837 840 1.270094 CGGATGGTTGGCTCGCTATAA 60.270 52.381 0.00 0.00 0.00 0.98
838 841 2.612972 CGGATGGTTGGCTCGCTATAAT 60.613 50.000 0.00 0.00 0.00 1.28
839 842 3.412386 GGATGGTTGGCTCGCTATAATT 58.588 45.455 0.00 0.00 0.00 1.40
840 843 3.189287 GGATGGTTGGCTCGCTATAATTG 59.811 47.826 0.00 0.00 0.00 2.32
841 844 3.275617 TGGTTGGCTCGCTATAATTGT 57.724 42.857 0.00 0.00 0.00 2.71
842 845 3.202906 TGGTTGGCTCGCTATAATTGTC 58.797 45.455 0.00 0.00 0.00 3.18
843 846 3.118408 TGGTTGGCTCGCTATAATTGTCT 60.118 43.478 0.00 0.00 0.00 3.41
845 848 3.013276 TGGCTCGCTATAATTGTCTCG 57.987 47.619 0.00 0.00 0.00 4.04
846 849 2.621526 TGGCTCGCTATAATTGTCTCGA 59.378 45.455 0.00 0.00 0.00 4.04
847 850 2.981140 GGCTCGCTATAATTGTCTCGAC 59.019 50.000 0.00 0.00 0.00 4.20
848 851 2.652642 GCTCGCTATAATTGTCTCGACG 59.347 50.000 0.00 0.00 0.00 5.12
849 852 3.227147 CTCGCTATAATTGTCTCGACGG 58.773 50.000 0.00 0.00 0.00 4.79
850 853 2.031420 TCGCTATAATTGTCTCGACGGG 60.031 50.000 0.00 0.00 0.00 5.28
851 854 2.287427 CGCTATAATTGTCTCGACGGGT 60.287 50.000 0.00 0.00 0.00 5.28
852 855 3.058708 CGCTATAATTGTCTCGACGGGTA 60.059 47.826 0.00 0.00 0.00 3.69
853 856 4.225208 GCTATAATTGTCTCGACGGGTAC 58.775 47.826 0.00 0.00 0.00 3.34
854 857 4.261322 GCTATAATTGTCTCGACGGGTACA 60.261 45.833 0.00 0.00 0.00 2.90
913 916 1.354101 AAGTAACGACCCCATGACCA 58.646 50.000 0.00 0.00 0.00 4.02
968 971 5.121811 CCATCTCTTCCACTCATAAACCAG 58.878 45.833 0.00 0.00 0.00 4.00
978 981 1.562008 TCATAAACCAGCCATTCCCGA 59.438 47.619 0.00 0.00 0.00 5.14
983 986 1.213296 ACCAGCCATTCCCGAACTAT 58.787 50.000 0.00 0.00 0.00 2.12
992 995 6.431234 AGCCATTCCCGAACTATAATTCAATC 59.569 38.462 0.00 0.00 0.00 2.67
1087 1090 2.258013 CCCGCGGTTTGCTGAAAGA 61.258 57.895 26.12 0.00 43.27 2.52
1098 1101 1.760268 GCTGAAAGATCTCGGCGCTG 61.760 60.000 10.86 10.86 37.93 5.18
1173 1176 2.394563 GCTTCCTCGGTCTTGCTGC 61.395 63.158 0.00 0.00 0.00 5.25
1175 1178 2.177594 CTTCCTCGGTCTTGCTGCCT 62.178 60.000 0.00 0.00 0.00 4.75
1195 1198 1.596934 CCCTCGCCTTGCTTGTCTA 59.403 57.895 0.00 0.00 0.00 2.59
1218 1221 2.438614 CCGCTCTCTCGAGGGTCA 60.439 66.667 13.10 0.00 45.79 4.02
1226 1229 1.332375 CTCTCGAGGGTCATCGTCTTC 59.668 57.143 13.56 0.00 43.20 2.87
1280 1283 3.264897 GCGGCGATGTACCTGCTG 61.265 66.667 12.98 5.74 38.04 4.41
1427 1430 1.528309 CGTCCAGGTGGGCTGTTTT 60.528 57.895 0.00 0.00 37.76 2.43
1481 1484 2.033194 CGGCGGGTGGAAGAAACTC 61.033 63.158 0.00 0.00 0.00 3.01
1488 1491 0.599204 GTGGAAGAAACTCGGCGTCA 60.599 55.000 6.85 0.00 0.00 4.35
1628 1631 2.678934 TGGGAGCGCTACTTCGGT 60.679 61.111 21.30 0.00 43.32 4.69
1637 1640 1.324005 GCTACTTCGGTGGGAGCTCT 61.324 60.000 14.64 0.00 0.00 4.09
1662 1665 0.240411 GAACTACGTGACCGCTGAGT 59.760 55.000 0.00 0.00 37.70 3.41
1663 1666 0.240411 AACTACGTGACCGCTGAGTC 59.760 55.000 0.00 0.00 37.70 3.36
1711 1714 5.521544 GCAGCTAGCGTAAGTAATTACTCT 58.478 41.667 18.28 12.98 34.99 3.24
1712 1715 5.626132 GCAGCTAGCGTAAGTAATTACTCTC 59.374 44.000 18.28 12.74 34.99 3.20
1713 1716 6.513720 GCAGCTAGCGTAAGTAATTACTCTCT 60.514 42.308 18.28 13.93 34.99 3.10
1714 1717 6.853872 CAGCTAGCGTAAGTAATTACTCTCTG 59.146 42.308 18.28 10.99 34.99 3.35
1715 1718 5.626132 GCTAGCGTAAGTAATTACTCTCTGC 59.374 44.000 18.28 17.79 34.99 4.26
1757 1763 5.447279 CGCATGGGTTAACTTGATGTTACTC 60.447 44.000 5.42 0.00 40.47 2.59
1758 1764 5.163652 GCATGGGTTAACTTGATGTTACTCC 60.164 44.000 5.42 0.00 40.47 3.85
1759 1765 4.571919 TGGGTTAACTTGATGTTACTCCG 58.428 43.478 5.42 0.00 40.47 4.63
1760 1766 3.373130 GGGTTAACTTGATGTTACTCCGC 59.627 47.826 5.42 0.00 40.47 5.54
1761 1767 3.373130 GGTTAACTTGATGTTACTCCGCC 59.627 47.826 5.42 0.00 40.47 6.13
1762 1768 2.851263 AACTTGATGTTACTCCGCCA 57.149 45.000 0.00 0.00 37.07 5.69
1763 1769 2.094762 ACTTGATGTTACTCCGCCAC 57.905 50.000 0.00 0.00 0.00 5.01
1764 1770 1.623811 ACTTGATGTTACTCCGCCACT 59.376 47.619 0.00 0.00 0.00 4.00
1791 1797 1.270199 TGCATGTTGCCAAATGTGACC 60.270 47.619 0.00 0.00 44.23 4.02
1796 1802 1.106351 TTGCCAAATGTGACCGCACT 61.106 50.000 0.00 0.00 45.36 4.40
1833 1839 6.663734 AGCTACTTAGTTTATTTGGCTCCAT 58.336 36.000 0.00 0.00 0.00 3.41
1901 1907 4.728608 GCCATTTCGTTGCTACTTTTATCG 59.271 41.667 0.00 0.00 0.00 2.92
1920 1926 2.099263 TCGAATCCTCTCGTCAATCACC 59.901 50.000 0.00 0.00 39.84 4.02
1923 1929 2.743636 TCCTCTCGTCAATCACCAAC 57.256 50.000 0.00 0.00 0.00 3.77
1981 1988 3.147553 TGTGCTAGTATGGGTTTGCAA 57.852 42.857 0.00 0.00 32.10 4.08
1982 1989 2.817258 TGTGCTAGTATGGGTTTGCAAC 59.183 45.455 0.00 0.00 32.10 4.17
1983 1990 3.081804 GTGCTAGTATGGGTTTGCAACT 58.918 45.455 0.00 0.00 32.10 3.16
1984 1991 3.506067 GTGCTAGTATGGGTTTGCAACTT 59.494 43.478 0.00 0.00 32.10 2.66
1985 1992 4.022329 GTGCTAGTATGGGTTTGCAACTTT 60.022 41.667 0.00 0.00 32.10 2.66
1986 1993 4.022416 TGCTAGTATGGGTTTGCAACTTTG 60.022 41.667 0.00 0.00 0.00 2.77
2028 2035 1.893062 GCCTGTCAAATTCCTGCCC 59.107 57.895 0.00 0.00 0.00 5.36
2056 2063 1.856802 TGCGGATCTGAACATGATCG 58.143 50.000 5.48 0.00 40.71 3.69
2064 2071 1.731709 CTGAACATGATCGAACCGCAA 59.268 47.619 0.00 0.00 0.00 4.85
2067 2074 3.190327 TGAACATGATCGAACCGCAAAAT 59.810 39.130 0.00 0.00 0.00 1.82
2080 2087 2.539476 CGCAAAATAATCTTGGGTGCC 58.461 47.619 0.00 0.00 33.38 5.01
2209 2216 2.823959 ACGGGTCTGGTAGGAACATAA 58.176 47.619 0.00 0.00 0.00 1.90
2218 2225 2.096980 GGTAGGAACATAAAGGCAACGC 59.903 50.000 0.00 0.00 46.39 4.84
2249 2256 3.258372 TCCGCTCACTTGACAGAAGTTAT 59.742 43.478 0.00 0.00 0.00 1.89
2346 2358 7.659799 TGAACGAGAACATTCTTCCTGAATAAA 59.340 33.333 0.00 0.00 43.00 1.40
2367 2379 1.958417 AATAAAACACTTTCGGCGCG 58.042 45.000 0.00 0.00 0.00 6.86
2381 2393 1.348594 GCGCGAAACATCCACTAGC 59.651 57.895 12.10 0.00 0.00 3.42
2415 2431 9.433153 AGTTATACCAACTAAGTCTAAGCAAAC 57.567 33.333 0.00 0.00 0.00 2.93
2455 2471 4.702131 GGAACTGGCTTTGTCAACATATCT 59.298 41.667 0.00 0.00 0.00 1.98
2456 2472 5.880332 GGAACTGGCTTTGTCAACATATCTA 59.120 40.000 0.00 0.00 0.00 1.98
2459 2475 5.079689 TGGCTTTGTCAACATATCTACGA 57.920 39.130 0.00 0.00 0.00 3.43
2464 2480 7.340699 GCTTTGTCAACATATCTACGAGATTG 58.659 38.462 0.00 0.00 36.20 2.67
2479 2495 9.121658 TCTACGAGATTGTCATGAGTACTAATT 57.878 33.333 0.00 0.00 0.00 1.40
2490 2506 9.542462 GTCATGAGTACTAATTTTGCATACCTA 57.458 33.333 0.00 0.00 0.00 3.08
2503 2520 8.856153 TTTTGCATACCTACAGTTTATCTTGA 57.144 30.769 0.00 0.00 0.00 3.02
2504 2521 8.492673 TTTGCATACCTACAGTTTATCTTGAG 57.507 34.615 0.00 0.00 0.00 3.02
2517 2534 6.712095 AGTTTATCTTGAGCAACAATGTCTCA 59.288 34.615 1.24 1.24 37.68 3.27
2522 2539 4.556942 TGAGCAACAATGTCTCAAACAG 57.443 40.909 2.75 0.00 42.37 3.16
2552 2569 7.602265 GGTATTTGACACCAATATGCTTTGTTT 59.398 33.333 0.00 0.00 36.01 2.83
2607 2625 9.400638 GTATATAGCACTCTGACTATCACAAAC 57.599 37.037 0.00 0.00 31.64 2.93
2652 2672 2.480037 CACAAAGCTCAGCATACGAACA 59.520 45.455 0.00 0.00 0.00 3.18
2670 2691 5.920273 ACGAACATTTCAGCCAAACTAATTG 59.080 36.000 0.00 0.00 38.84 2.32
2725 2746 1.702401 TCAGTGGTAGATTGGGCAACA 59.298 47.619 0.00 0.00 39.74 3.33
2746 2770 2.359975 GGCTACAGCGTTGCCCTT 60.360 61.111 18.03 0.00 45.81 3.95
2750 2774 1.234821 CTACAGCGTTGCCCTTCAAA 58.765 50.000 0.00 0.00 36.26 2.69
2758 2782 1.861542 TTGCCCTTCAAATCACGGCG 61.862 55.000 4.80 4.80 42.76 6.46
2759 2783 2.038269 GCCCTTCAAATCACGGCGA 61.038 57.895 16.62 0.00 0.00 5.54
2790 2814 2.919666 GTGAACACACCATGCCATAC 57.080 50.000 0.00 0.00 0.00 2.39
2791 2815 2.158559 GTGAACACACCATGCCATACA 58.841 47.619 0.00 0.00 0.00 2.29
2792 2816 2.754552 GTGAACACACCATGCCATACAT 59.245 45.455 0.00 0.00 40.66 2.29
2793 2817 3.193267 GTGAACACACCATGCCATACATT 59.807 43.478 0.00 0.00 36.64 2.71
2794 2818 4.397730 GTGAACACACCATGCCATACATTA 59.602 41.667 0.00 0.00 36.64 1.90
2795 2819 5.012893 TGAACACACCATGCCATACATTAA 58.987 37.500 0.00 0.00 36.64 1.40
2796 2820 5.478332 TGAACACACCATGCCATACATTAAA 59.522 36.000 0.00 0.00 36.64 1.52
2797 2821 5.581126 ACACACCATGCCATACATTAAAG 57.419 39.130 0.00 0.00 36.64 1.85
2798 2822 5.260424 ACACACCATGCCATACATTAAAGA 58.740 37.500 0.00 0.00 36.64 2.52
2799 2823 5.357878 ACACACCATGCCATACATTAAAGAG 59.642 40.000 0.00 0.00 36.64 2.85
2800 2824 4.339247 ACACCATGCCATACATTAAAGAGC 59.661 41.667 0.00 0.00 36.64 4.09
2801 2825 3.891366 ACCATGCCATACATTAAAGAGCC 59.109 43.478 0.00 0.00 36.64 4.70
2802 2826 3.890756 CCATGCCATACATTAAAGAGCCA 59.109 43.478 0.00 0.00 36.64 4.75
2803 2827 4.341806 CCATGCCATACATTAAAGAGCCAA 59.658 41.667 0.00 0.00 36.64 4.52
2804 2828 4.981806 TGCCATACATTAAAGAGCCAAC 57.018 40.909 0.00 0.00 0.00 3.77
2805 2829 4.339748 TGCCATACATTAAAGAGCCAACA 58.660 39.130 0.00 0.00 0.00 3.33
2806 2830 4.769488 TGCCATACATTAAAGAGCCAACAA 59.231 37.500 0.00 0.00 0.00 2.83
2807 2831 5.102313 GCCATACATTAAAGAGCCAACAAC 58.898 41.667 0.00 0.00 0.00 3.32
2808 2832 5.336372 GCCATACATTAAAGAGCCAACAACA 60.336 40.000 0.00 0.00 0.00 3.33
2809 2833 6.092748 CCATACATTAAAGAGCCAACAACAC 58.907 40.000 0.00 0.00 0.00 3.32
2810 2834 4.584327 ACATTAAAGAGCCAACAACACC 57.416 40.909 0.00 0.00 0.00 4.16
2811 2835 3.004315 ACATTAAAGAGCCAACAACACCG 59.996 43.478 0.00 0.00 0.00 4.94
2812 2836 1.600023 TAAAGAGCCAACAACACCGG 58.400 50.000 0.00 0.00 0.00 5.28
2813 2837 0.106918 AAAGAGCCAACAACACCGGA 60.107 50.000 9.46 0.00 0.00 5.14
2814 2838 0.818040 AAGAGCCAACAACACCGGAC 60.818 55.000 9.46 0.00 0.00 4.79
2815 2839 1.227853 GAGCCAACAACACCGGACT 60.228 57.895 9.46 0.00 0.00 3.85
2816 2840 0.034337 GAGCCAACAACACCGGACTA 59.966 55.000 9.46 0.00 0.00 2.59
2817 2841 0.690762 AGCCAACAACACCGGACTAT 59.309 50.000 9.46 0.00 0.00 2.12
2818 2842 1.903860 AGCCAACAACACCGGACTATA 59.096 47.619 9.46 0.00 0.00 1.31
2819 2843 2.093658 AGCCAACAACACCGGACTATAG 60.094 50.000 9.46 0.00 0.00 1.31
2820 2844 2.093869 GCCAACAACACCGGACTATAGA 60.094 50.000 9.46 0.00 0.00 1.98
2821 2845 3.618019 GCCAACAACACCGGACTATAGAA 60.618 47.826 9.46 0.00 0.00 2.10
2822 2846 3.930848 CCAACAACACCGGACTATAGAAC 59.069 47.826 9.46 0.03 0.00 3.01
2823 2847 4.322499 CCAACAACACCGGACTATAGAACT 60.322 45.833 9.46 0.00 0.00 3.01
2824 2848 5.235516 CAACAACACCGGACTATAGAACTT 58.764 41.667 9.46 0.00 0.00 2.66
2825 2849 5.479124 ACAACACCGGACTATAGAACTTT 57.521 39.130 9.46 0.00 0.00 2.66
2826 2850 5.861727 ACAACACCGGACTATAGAACTTTT 58.138 37.500 9.46 0.00 0.00 2.27
2827 2851 5.699458 ACAACACCGGACTATAGAACTTTTG 59.301 40.000 9.46 3.75 0.00 2.44
2828 2852 5.733620 ACACCGGACTATAGAACTTTTGA 57.266 39.130 9.46 0.00 0.00 2.69
2829 2853 5.476614 ACACCGGACTATAGAACTTTTGAC 58.523 41.667 9.46 0.00 0.00 3.18
2830 2854 5.011329 ACACCGGACTATAGAACTTTTGACA 59.989 40.000 9.46 0.00 0.00 3.58
2831 2855 6.106673 CACCGGACTATAGAACTTTTGACAT 58.893 40.000 9.46 0.00 0.00 3.06
2832 2856 7.093640 ACACCGGACTATAGAACTTTTGACATA 60.094 37.037 9.46 0.00 0.00 2.29
2833 2857 7.926555 CACCGGACTATAGAACTTTTGACATAT 59.073 37.037 9.46 0.00 0.00 1.78
2834 2858 9.139734 ACCGGACTATAGAACTTTTGACATATA 57.860 33.333 9.46 0.00 0.00 0.86
2842 2866 7.645058 AGAACTTTTGACATATATGTTGGGG 57.355 36.000 19.19 11.15 41.95 4.96
2843 2867 7.410174 AGAACTTTTGACATATATGTTGGGGA 58.590 34.615 19.19 5.09 41.95 4.81
2844 2868 7.893302 AGAACTTTTGACATATATGTTGGGGAA 59.107 33.333 19.19 9.45 41.95 3.97
2845 2869 8.608185 AACTTTTGACATATATGTTGGGGAAT 57.392 30.769 19.19 2.87 41.95 3.01
2846 2870 8.010733 ACTTTTGACATATATGTTGGGGAATG 57.989 34.615 19.19 12.86 41.95 2.67
2847 2871 7.619302 ACTTTTGACATATATGTTGGGGAATGT 59.381 33.333 19.19 13.34 41.95 2.71
2848 2872 9.130661 CTTTTGACATATATGTTGGGGAATGTA 57.869 33.333 19.19 0.00 41.95 2.29
2849 2873 8.690203 TTTGACATATATGTTGGGGAATGTAG 57.310 34.615 19.19 0.00 41.95 2.74
2850 2874 7.387265 TGACATATATGTTGGGGAATGTAGT 57.613 36.000 19.19 0.00 41.95 2.73
2851 2875 8.499288 TGACATATATGTTGGGGAATGTAGTA 57.501 34.615 19.19 0.00 41.95 1.82
2852 2876 8.939932 TGACATATATGTTGGGGAATGTAGTAA 58.060 33.333 19.19 0.00 41.95 2.24
2853 2877 9.959721 GACATATATGTTGGGGAATGTAGTAAT 57.040 33.333 19.19 0.00 41.95 1.89
2858 2882 9.707957 ATATGTTGGGGAATGTAGTAATTCAAA 57.292 29.630 0.00 0.00 38.14 2.69
2859 2883 7.841282 TGTTGGGGAATGTAGTAATTCAAAA 57.159 32.000 0.00 0.00 38.14 2.44
2860 2884 8.251383 TGTTGGGGAATGTAGTAATTCAAAAA 57.749 30.769 0.00 0.00 38.14 1.94
2879 2903 5.365403 AAAAATTTCCTACGATCACGCAA 57.635 34.783 0.00 0.00 43.96 4.85
2880 2904 4.600012 AAATTTCCTACGATCACGCAAG 57.400 40.909 0.00 0.00 43.96 4.01
2881 2905 3.520290 ATTTCCTACGATCACGCAAGA 57.480 42.857 0.00 0.00 43.96 3.02
2882 2906 3.520290 TTTCCTACGATCACGCAAGAT 57.480 42.857 0.00 0.00 43.96 2.40
2883 2907 2.776312 TCCTACGATCACGCAAGATC 57.224 50.000 5.52 5.52 43.96 2.75
2884 2908 2.298610 TCCTACGATCACGCAAGATCT 58.701 47.619 12.06 0.00 41.74 2.75
2885 2909 3.473625 TCCTACGATCACGCAAGATCTA 58.526 45.455 12.06 4.90 41.74 1.98
2886 2910 4.072839 TCCTACGATCACGCAAGATCTAT 58.927 43.478 12.06 4.73 41.74 1.98
2887 2911 4.154375 TCCTACGATCACGCAAGATCTATC 59.846 45.833 12.06 0.00 41.74 2.08
2888 2912 4.155099 CCTACGATCACGCAAGATCTATCT 59.845 45.833 12.06 0.00 41.74 1.98
2889 2913 5.351740 CCTACGATCACGCAAGATCTATCTA 59.648 44.000 12.06 0.00 41.74 1.98
2890 2914 5.289917 ACGATCACGCAAGATCTATCTAG 57.710 43.478 12.06 0.00 41.74 2.43
2891 2915 4.155099 ACGATCACGCAAGATCTATCTAGG 59.845 45.833 12.06 0.32 41.74 3.02
2892 2916 4.393371 CGATCACGCAAGATCTATCTAGGA 59.607 45.833 12.06 0.00 41.74 2.94
2893 2917 5.447144 CGATCACGCAAGATCTATCTAGGAG 60.447 48.000 12.06 0.00 41.74 3.69
2894 2918 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.681806 CCACCATTAATTATTCACACATACACA 58.318 33.333 0.00 0.00 0.00 3.72
28 29 8.682710 ACCACCATTAATTATTCACACATACAC 58.317 33.333 0.00 0.00 0.00 2.90
29 30 8.815565 ACCACCATTAATTATTCACACATACA 57.184 30.769 0.00 0.00 0.00 2.29
30 31 9.515020 CAACCACCATTAATTATTCACACATAC 57.485 33.333 0.00 0.00 0.00 2.39
31 32 9.249053 ACAACCACCATTAATTATTCACACATA 57.751 29.630 0.00 0.00 0.00 2.29
32 33 8.034215 CACAACCACCATTAATTATTCACACAT 58.966 33.333 0.00 0.00 0.00 3.21
33 34 7.231519 TCACAACCACCATTAATTATTCACACA 59.768 33.333 0.00 0.00 0.00 3.72
34 35 7.598278 TCACAACCACCATTAATTATTCACAC 58.402 34.615 0.00 0.00 0.00 3.82
35 36 7.667635 TCTCACAACCACCATTAATTATTCACA 59.332 33.333 0.00 0.00 0.00 3.58
36 37 7.968405 GTCTCACAACCACCATTAATTATTCAC 59.032 37.037 0.00 0.00 0.00 3.18
37 38 7.667635 TGTCTCACAACCACCATTAATTATTCA 59.332 33.333 0.00 0.00 0.00 2.57
38 39 8.050778 TGTCTCACAACCACCATTAATTATTC 57.949 34.615 0.00 0.00 0.00 1.75
39 40 8.593945 ATGTCTCACAACCACCATTAATTATT 57.406 30.769 0.00 0.00 0.00 1.40
40 41 8.593945 AATGTCTCACAACCACCATTAATTAT 57.406 30.769 0.00 0.00 0.00 1.28
41 42 7.148323 CGAATGTCTCACAACCACCATTAATTA 60.148 37.037 0.00 0.00 0.00 1.40
42 43 6.349280 CGAATGTCTCACAACCACCATTAATT 60.349 38.462 0.00 0.00 0.00 1.40
43 44 5.123820 CGAATGTCTCACAACCACCATTAAT 59.876 40.000 0.00 0.00 0.00 1.40
44 45 4.454161 CGAATGTCTCACAACCACCATTAA 59.546 41.667 0.00 0.00 0.00 1.40
45 46 4.000325 CGAATGTCTCACAACCACCATTA 59.000 43.478 0.00 0.00 0.00 1.90
46 47 2.813754 CGAATGTCTCACAACCACCATT 59.186 45.455 0.00 0.00 0.00 3.16
47 48 2.038426 TCGAATGTCTCACAACCACCAT 59.962 45.455 0.00 0.00 0.00 3.55
48 49 1.414550 TCGAATGTCTCACAACCACCA 59.585 47.619 0.00 0.00 0.00 4.17
49 50 2.163818 TCGAATGTCTCACAACCACC 57.836 50.000 0.00 0.00 0.00 4.61
50 51 7.715265 ATATAATCGAATGTCTCACAACCAC 57.285 36.000 0.00 0.00 0.00 4.16
125 126 9.790389 GATTTTCTCGTAGAACCGATCATATAT 57.210 33.333 0.00 0.00 33.26 0.86
126 127 9.011095 AGATTTTCTCGTAGAACCGATCATATA 57.989 33.333 0.00 0.00 33.26 0.86
127 128 7.887381 AGATTTTCTCGTAGAACCGATCATAT 58.113 34.615 0.00 0.00 33.26 1.78
128 129 7.273320 AGATTTTCTCGTAGAACCGATCATA 57.727 36.000 0.00 0.00 33.26 2.15
129 130 6.150396 AGATTTTCTCGTAGAACCGATCAT 57.850 37.500 0.00 0.00 33.26 2.45
130 131 5.578005 AGATTTTCTCGTAGAACCGATCA 57.422 39.130 0.00 0.00 33.26 2.92
131 132 8.576936 AAATAGATTTTCTCGTAGAACCGATC 57.423 34.615 0.00 0.00 33.26 3.69
161 162 9.923143 ACTACATATTGTACACGTTATGCATAT 57.077 29.630 7.36 0.00 0.00 1.78
163 164 9.923143 ATACTACATATTGTACACGTTATGCAT 57.077 29.630 3.79 3.79 0.00 3.96
164 165 9.401873 GATACTACATATTGTACACGTTATGCA 57.598 33.333 14.90 0.00 0.00 3.96
165 166 9.622004 AGATACTACATATTGTACACGTTATGC 57.378 33.333 14.90 0.00 0.00 3.14
181 182 9.899661 TGTTTGCTGGTATTTTAGATACTACAT 57.100 29.630 0.00 0.00 0.00 2.29
182 183 9.727859 TTGTTTGCTGGTATTTTAGATACTACA 57.272 29.630 0.00 0.00 0.00 2.74
246 247 9.475620 TGTTTGGGGTTTGGTTTTAATTTTAAT 57.524 25.926 0.00 0.00 0.00 1.40
247 248 8.873186 TGTTTGGGGTTTGGTTTTAATTTTAA 57.127 26.923 0.00 0.00 0.00 1.52
248 249 9.475620 AATGTTTGGGGTTTGGTTTTAATTTTA 57.524 25.926 0.00 0.00 0.00 1.52
249 250 7.962995 ATGTTTGGGGTTTGGTTTTAATTTT 57.037 28.000 0.00 0.00 0.00 1.82
250 251 7.962995 AATGTTTGGGGTTTGGTTTTAATTT 57.037 28.000 0.00 0.00 0.00 1.82
251 252 7.962995 AAATGTTTGGGGTTTGGTTTTAATT 57.037 28.000 0.00 0.00 0.00 1.40
252 253 8.275758 ACTAAATGTTTGGGGTTTGGTTTTAAT 58.724 29.630 0.00 0.00 0.00 1.40
253 254 7.631007 ACTAAATGTTTGGGGTTTGGTTTTAA 58.369 30.769 0.00 0.00 0.00 1.52
254 255 7.196637 ACTAAATGTTTGGGGTTTGGTTTTA 57.803 32.000 0.00 0.00 0.00 1.52
255 256 6.068461 ACTAAATGTTTGGGGTTTGGTTTT 57.932 33.333 0.00 0.00 0.00 2.43
256 257 5.702065 ACTAAATGTTTGGGGTTTGGTTT 57.298 34.783 0.00 0.00 0.00 3.27
257 258 5.070714 GGTACTAAATGTTTGGGGTTTGGTT 59.929 40.000 0.00 0.00 30.73 3.67
258 259 4.589798 GGTACTAAATGTTTGGGGTTTGGT 59.410 41.667 0.00 0.00 32.49 3.67
259 260 4.321378 CGGTACTAAATGTTTGGGGTTTGG 60.321 45.833 0.00 0.00 0.00 3.28
260 261 4.321378 CCGGTACTAAATGTTTGGGGTTTG 60.321 45.833 0.00 0.00 0.00 2.93
261 262 3.827876 CCGGTACTAAATGTTTGGGGTTT 59.172 43.478 0.00 0.00 0.00 3.27
262 263 3.181430 ACCGGTACTAAATGTTTGGGGTT 60.181 43.478 4.49 0.00 0.00 4.11
263 264 2.376181 ACCGGTACTAAATGTTTGGGGT 59.624 45.455 4.49 0.00 0.00 4.95
264 265 3.076079 ACCGGTACTAAATGTTTGGGG 57.924 47.619 4.49 0.00 0.00 4.96
265 266 3.191791 CCAACCGGTACTAAATGTTTGGG 59.808 47.826 8.00 0.00 31.35 4.12
266 267 3.822167 ACCAACCGGTACTAAATGTTTGG 59.178 43.478 8.00 10.60 46.71 3.28
267 268 4.789784 CACCAACCGGTACTAAATGTTTG 58.210 43.478 8.00 0.00 46.94 2.93
268 269 3.253921 GCACCAACCGGTACTAAATGTTT 59.746 43.478 8.00 0.00 46.94 2.83
269 270 2.815503 GCACCAACCGGTACTAAATGTT 59.184 45.455 8.00 0.00 46.94 2.71
270 271 2.039348 AGCACCAACCGGTACTAAATGT 59.961 45.455 8.00 0.00 46.94 2.71
271 272 2.706890 AGCACCAACCGGTACTAAATG 58.293 47.619 8.00 0.00 46.94 2.32
272 273 4.556592 TTAGCACCAACCGGTACTAAAT 57.443 40.909 8.00 0.00 44.72 1.40
274 275 2.632028 TGTTAGCACCAACCGGTACTAA 59.368 45.455 8.00 8.59 46.94 2.24
275 276 2.246469 TGTTAGCACCAACCGGTACTA 58.754 47.619 8.00 2.12 46.94 1.82
276 277 1.050204 TGTTAGCACCAACCGGTACT 58.950 50.000 8.00 3.20 46.94 2.73
277 278 1.532437 GTTGTTAGCACCAACCGGTAC 59.468 52.381 8.00 0.00 46.94 3.34
278 279 1.417145 AGTTGTTAGCACCAACCGGTA 59.583 47.619 8.00 0.00 46.94 4.02
280 281 0.591170 CAGTTGTTAGCACCAACCGG 59.409 55.000 0.00 0.00 42.46 5.28
281 282 0.591170 CCAGTTGTTAGCACCAACCG 59.409 55.000 8.86 0.98 42.46 4.44
282 283 1.687563 ACCAGTTGTTAGCACCAACC 58.312 50.000 8.86 0.00 42.46 3.77
283 284 3.250040 CAGTACCAGTTGTTAGCACCAAC 59.750 47.826 5.34 5.34 41.94 3.77
284 285 3.134985 TCAGTACCAGTTGTTAGCACCAA 59.865 43.478 0.00 0.00 0.00 3.67
285 286 2.701423 TCAGTACCAGTTGTTAGCACCA 59.299 45.455 0.00 0.00 0.00 4.17
286 287 3.396260 TCAGTACCAGTTGTTAGCACC 57.604 47.619 0.00 0.00 0.00 5.01
287 288 3.684788 CCATCAGTACCAGTTGTTAGCAC 59.315 47.826 0.00 0.00 0.00 4.40
288 289 3.326588 ACCATCAGTACCAGTTGTTAGCA 59.673 43.478 0.00 0.00 0.00 3.49
289 290 3.939066 ACCATCAGTACCAGTTGTTAGC 58.061 45.455 0.00 0.00 0.00 3.09
290 291 6.370718 GGTAAACCATCAGTACCAGTTGTTAG 59.629 42.308 0.00 0.00 37.75 2.34
291 292 6.183361 TGGTAAACCATCAGTACCAGTTGTTA 60.183 38.462 0.00 0.00 41.82 2.41
292 293 5.067954 GGTAAACCATCAGTACCAGTTGTT 58.932 41.667 0.00 0.00 37.75 2.83
293 294 4.103469 TGGTAAACCATCAGTACCAGTTGT 59.897 41.667 0.00 0.00 41.82 3.32
294 295 4.647611 TGGTAAACCATCAGTACCAGTTG 58.352 43.478 0.00 0.00 41.82 3.16
295 296 4.986054 TGGTAAACCATCAGTACCAGTT 57.014 40.909 0.00 0.00 41.82 3.16
298 299 2.640332 TGCTGGTAAACCATCAGTACCA 59.360 45.455 1.51 2.07 46.46 3.25
299 300 3.007635 GTGCTGGTAAACCATCAGTACC 58.992 50.000 5.94 0.00 46.46 3.34
300 301 3.007635 GGTGCTGGTAAACCATCAGTAC 58.992 50.000 5.94 3.26 46.46 2.73
301 302 2.026636 GGGTGCTGGTAAACCATCAGTA 60.027 50.000 5.94 0.00 46.46 2.74
302 303 1.271926 GGGTGCTGGTAAACCATCAGT 60.272 52.381 5.94 0.00 46.46 3.41
303 304 1.463674 GGGTGCTGGTAAACCATCAG 58.536 55.000 5.94 0.00 46.46 2.90
304 305 0.322098 CGGGTGCTGGTAAACCATCA 60.322 55.000 1.51 1.55 46.46 3.07
305 306 1.029947 CCGGGTGCTGGTAAACCATC 61.030 60.000 1.51 0.00 46.46 3.51
306 307 1.001393 CCGGGTGCTGGTAAACCAT 60.001 57.895 1.51 0.00 46.46 3.55
307 308 2.432563 CCGGGTGCTGGTAAACCA 59.567 61.111 1.13 1.13 45.30 3.67
308 309 2.360726 CCCGGGTGCTGGTAAACC 60.361 66.667 14.18 0.00 35.59 3.27
309 310 3.060000 GCCCGGGTGCTGGTAAAC 61.060 66.667 24.63 0.00 0.00 2.01
310 311 4.354162 GGCCCGGGTGCTGGTAAA 62.354 66.667 24.63 0.00 0.00 2.01
325 326 4.664677 ACGTGGCACGAGTCAGGC 62.665 66.667 42.65 0.87 46.05 4.85
326 327 2.734723 CACGTGGCACGAGTCAGG 60.735 66.667 42.65 20.95 46.05 3.86
327 328 2.734723 CCACGTGGCACGAGTCAG 60.735 66.667 42.65 25.00 46.05 3.51
328 329 3.533105 ACCACGTGGCACGAGTCA 61.533 61.111 42.65 0.00 46.05 3.41
329 330 3.036084 CACCACGTGGCACGAGTC 61.036 66.667 42.65 4.23 46.05 3.36
338 339 1.574428 GCTAAAGTGCCACCACGTG 59.426 57.895 9.08 9.08 46.62 4.49
339 340 1.959226 CGCTAAAGTGCCACCACGT 60.959 57.895 0.00 0.00 46.62 4.49
340 341 2.860293 CGCTAAAGTGCCACCACG 59.140 61.111 0.00 0.00 46.62 4.94
341 342 2.561373 GCGCTAAAGTGCCACCAC 59.439 61.111 0.00 0.00 45.15 4.16
348 349 2.025418 ACGAACCGGCGCTAAAGTG 61.025 57.895 7.64 0.00 33.86 3.16
349 350 2.025418 CACGAACCGGCGCTAAAGT 61.025 57.895 7.64 0.00 33.86 2.66
350 351 2.776072 CACGAACCGGCGCTAAAG 59.224 61.111 7.64 0.00 33.86 1.85
351 352 3.416382 GCACGAACCGGCGCTAAA 61.416 61.111 7.64 0.00 33.86 1.85
369 370 1.135721 CCCTCCTTTACTACCGGTTCG 59.864 57.143 15.04 7.30 0.00 3.95
370 371 1.483827 CCCCTCCTTTACTACCGGTTC 59.516 57.143 15.04 0.00 0.00 3.62
371 372 1.576577 CCCCTCCTTTACTACCGGTT 58.423 55.000 15.04 0.00 0.00 4.44
372 373 0.325954 CCCCCTCCTTTACTACCGGT 60.326 60.000 13.98 13.98 0.00 5.28
373 374 1.693152 GCCCCCTCCTTTACTACCGG 61.693 65.000 0.00 0.00 0.00 5.28
374 375 1.693152 GGCCCCCTCCTTTACTACCG 61.693 65.000 0.00 0.00 0.00 4.02
375 376 0.327287 AGGCCCCCTCCTTTACTACC 60.327 60.000 0.00 0.00 30.82 3.18
376 377 1.592948 AAGGCCCCCTCCTTTACTAC 58.407 55.000 0.00 0.00 43.62 2.73
383 384 0.326713 GAGACTAAAGGCCCCCTCCT 60.327 60.000 0.00 0.00 38.31 3.69
384 385 1.346479 GGAGACTAAAGGCCCCCTCC 61.346 65.000 0.00 2.94 30.89 4.30
385 386 0.620700 TGGAGACTAAAGGCCCCCTC 60.621 60.000 0.00 0.00 30.89 4.30
386 387 0.914902 GTGGAGACTAAAGGCCCCCT 60.915 60.000 0.00 0.00 33.87 4.79
387 388 0.914902 AGTGGAGACTAAAGGCCCCC 60.915 60.000 0.00 0.00 0.00 5.40
388 389 0.542333 GAGTGGAGACTAAAGGCCCC 59.458 60.000 0.00 0.00 30.16 5.80
389 390 1.574263 AGAGTGGAGACTAAAGGCCC 58.426 55.000 0.00 0.00 30.16 5.80
390 391 3.704800 AAAGAGTGGAGACTAAAGGCC 57.295 47.619 0.00 0.00 30.16 5.19
391 392 5.408880 ACTAAAGAGTGGAGACTAAAGGC 57.591 43.478 0.00 0.00 33.41 4.35
404 405 2.895404 TCTGTAACCGGCACTAAAGAGT 59.105 45.455 0.00 0.00 35.80 3.24
405 406 3.587797 TCTGTAACCGGCACTAAAGAG 57.412 47.619 0.00 0.00 0.00 2.85
406 407 3.555586 GGTTCTGTAACCGGCACTAAAGA 60.556 47.826 0.00 0.00 45.61 2.52
407 408 2.740447 GGTTCTGTAACCGGCACTAAAG 59.260 50.000 0.00 0.00 45.61 1.85
408 409 2.769893 GGTTCTGTAACCGGCACTAAA 58.230 47.619 0.00 0.00 45.61 1.85
409 410 2.460757 GGTTCTGTAACCGGCACTAA 57.539 50.000 0.00 0.00 45.61 2.24
418 419 2.740447 CCTTTAGTGCCGGTTCTGTAAC 59.260 50.000 1.90 0.00 34.66 2.50
419 420 2.872842 GCCTTTAGTGCCGGTTCTGTAA 60.873 50.000 1.90 1.06 0.00 2.41
420 421 1.338389 GCCTTTAGTGCCGGTTCTGTA 60.338 52.381 1.90 0.00 0.00 2.74
421 422 0.605589 GCCTTTAGTGCCGGTTCTGT 60.606 55.000 1.90 0.00 0.00 3.41
422 423 1.305930 GGCCTTTAGTGCCGGTTCTG 61.306 60.000 1.90 0.00 39.48 3.02
423 424 1.002502 GGCCTTTAGTGCCGGTTCT 60.003 57.895 1.90 4.41 39.48 3.01
424 425 3.587095 GGCCTTTAGTGCCGGTTC 58.413 61.111 1.90 0.00 39.48 3.62
430 431 1.736126 GTTCGTAAGGGCCTTTAGTGC 59.264 52.381 26.29 8.97 38.47 4.40
431 432 2.353323 GGTTCGTAAGGGCCTTTAGTG 58.647 52.381 26.29 11.88 38.47 2.74
432 433 1.066645 CGGTTCGTAAGGGCCTTTAGT 60.067 52.381 26.29 1.50 38.47 2.24
433 434 1.205417 TCGGTTCGTAAGGGCCTTTAG 59.795 52.381 26.29 18.30 38.47 1.85
434 435 1.066929 GTCGGTTCGTAAGGGCCTTTA 60.067 52.381 26.29 2.60 38.47 1.85
435 436 0.321034 GTCGGTTCGTAAGGGCCTTT 60.321 55.000 26.29 5.08 38.47 3.11
436 437 1.294459 GTCGGTTCGTAAGGGCCTT 59.706 57.895 24.44 24.44 38.47 4.35
437 438 2.976356 GTCGGTTCGTAAGGGCCT 59.024 61.111 0.00 0.00 38.47 5.19
438 439 2.507769 CGTCGGTTCGTAAGGGCC 60.508 66.667 0.00 0.00 38.47 5.80
439 440 0.109319 TAACGTCGGTTCGTAAGGGC 60.109 55.000 0.00 0.00 43.38 5.19
440 441 2.346099 TTAACGTCGGTTCGTAAGGG 57.654 50.000 0.00 0.00 43.38 3.95
441 442 2.091122 GCTTTAACGTCGGTTCGTAAGG 59.909 50.000 0.00 0.00 43.38 2.69
442 443 2.091122 GGCTTTAACGTCGGTTCGTAAG 59.909 50.000 0.00 4.92 43.38 2.34
443 444 2.058057 GGCTTTAACGTCGGTTCGTAA 58.942 47.619 0.00 0.00 43.38 3.18
444 445 1.668628 GGGCTTTAACGTCGGTTCGTA 60.669 52.381 0.00 0.00 43.38 3.43
445 446 0.945743 GGGCTTTAACGTCGGTTCGT 60.946 55.000 0.00 0.00 46.19 3.85
446 447 0.945265 TGGGCTTTAACGTCGGTTCG 60.945 55.000 0.00 0.00 37.58 3.95
447 448 0.794473 CTGGGCTTTAACGTCGGTTC 59.206 55.000 0.00 0.00 37.58 3.62
448 449 0.107268 ACTGGGCTTTAACGTCGGTT 59.893 50.000 0.00 0.00 40.20 4.44
449 450 0.107268 AACTGGGCTTTAACGTCGGT 59.893 50.000 0.00 0.00 0.00 4.69
450 451 0.794473 GAACTGGGCTTTAACGTCGG 59.206 55.000 0.00 0.00 0.00 4.79
451 452 1.459592 CAGAACTGGGCTTTAACGTCG 59.540 52.381 0.00 0.00 0.00 5.12
452 453 1.197036 GCAGAACTGGGCTTTAACGTC 59.803 52.381 3.99 0.00 0.00 4.34
453 454 1.235724 GCAGAACTGGGCTTTAACGT 58.764 50.000 3.99 0.00 0.00 3.99
454 455 1.069227 GTGCAGAACTGGGCTTTAACG 60.069 52.381 3.99 0.00 0.00 3.18
455 456 2.230660 AGTGCAGAACTGGGCTTTAAC 58.769 47.619 3.99 0.00 37.88 2.01
456 457 2.656947 AGTGCAGAACTGGGCTTTAA 57.343 45.000 3.99 0.00 37.88 1.52
457 458 2.637872 ACTAGTGCAGAACTGGGCTTTA 59.362 45.455 0.00 0.00 41.55 1.85
458 459 1.421646 ACTAGTGCAGAACTGGGCTTT 59.578 47.619 0.00 0.00 41.55 3.51
459 460 1.059913 ACTAGTGCAGAACTGGGCTT 58.940 50.000 0.00 0.00 41.55 4.35
460 461 0.322975 CACTAGTGCAGAACTGGGCT 59.677 55.000 10.54 0.00 41.55 5.19
461 462 0.321671 TCACTAGTGCAGAACTGGGC 59.678 55.000 18.45 0.00 41.55 5.36
462 463 2.499289 AGATCACTAGTGCAGAACTGGG 59.501 50.000 18.45 0.00 41.55 4.45
463 464 3.883830 AGATCACTAGTGCAGAACTGG 57.116 47.619 18.45 0.00 42.86 4.00
464 465 3.370366 GCAAGATCACTAGTGCAGAACTG 59.630 47.826 18.45 10.69 40.26 3.16
465 466 3.007290 TGCAAGATCACTAGTGCAGAACT 59.993 43.478 18.45 9.14 41.85 3.01
466 467 3.329386 TGCAAGATCACTAGTGCAGAAC 58.671 45.455 18.45 6.37 41.85 3.01
467 468 3.683365 TGCAAGATCACTAGTGCAGAA 57.317 42.857 18.45 0.79 41.85 3.02
471 472 1.863454 CGGATGCAAGATCACTAGTGC 59.137 52.381 18.45 5.90 37.51 4.40
472 473 2.159043 ACCGGATGCAAGATCACTAGTG 60.159 50.000 17.17 17.17 0.00 2.74
473 474 2.111384 ACCGGATGCAAGATCACTAGT 58.889 47.619 9.46 0.00 0.00 2.57
474 475 2.101415 TCACCGGATGCAAGATCACTAG 59.899 50.000 9.46 0.00 0.00 2.57
475 476 2.107366 TCACCGGATGCAAGATCACTA 58.893 47.619 9.46 0.00 0.00 2.74
476 477 0.904649 TCACCGGATGCAAGATCACT 59.095 50.000 9.46 0.00 0.00 3.41
477 478 1.009829 GTCACCGGATGCAAGATCAC 58.990 55.000 9.46 0.00 0.00 3.06
478 479 0.107703 GGTCACCGGATGCAAGATCA 60.108 55.000 9.46 0.00 0.00 2.92
479 480 0.179000 AGGTCACCGGATGCAAGATC 59.821 55.000 9.46 0.00 0.00 2.75
480 481 1.496060 TAGGTCACCGGATGCAAGAT 58.504 50.000 9.46 0.00 0.00 2.40
481 482 1.138859 CATAGGTCACCGGATGCAAGA 59.861 52.381 9.46 0.00 0.00 3.02
482 483 1.586422 CATAGGTCACCGGATGCAAG 58.414 55.000 9.46 0.00 0.00 4.01
483 484 0.463654 GCATAGGTCACCGGATGCAA 60.464 55.000 24.51 0.00 42.88 4.08
484 485 1.146041 GCATAGGTCACCGGATGCA 59.854 57.895 24.51 0.00 42.88 3.96
485 486 1.146041 TGCATAGGTCACCGGATGC 59.854 57.895 23.31 23.31 43.31 3.91
486 487 0.532862 GGTGCATAGGTCACCGGATG 60.533 60.000 9.46 2.48 43.75 3.51
487 488 1.830145 GGTGCATAGGTCACCGGAT 59.170 57.895 9.46 0.00 43.75 4.18
488 489 3.305314 GGTGCATAGGTCACCGGA 58.695 61.111 9.46 0.00 43.75 5.14
492 493 1.000955 CTATCCGGGTGCATAGGTCAC 59.999 57.143 0.00 0.00 0.00 3.67
493 494 1.338107 CTATCCGGGTGCATAGGTCA 58.662 55.000 0.00 0.00 0.00 4.02
494 495 0.037232 GCTATCCGGGTGCATAGGTC 60.037 60.000 0.00 0.00 0.00 3.85
495 496 0.471971 AGCTATCCGGGTGCATAGGT 60.472 55.000 0.00 4.03 0.00 3.08
496 497 0.247736 GAGCTATCCGGGTGCATAGG 59.752 60.000 0.00 0.00 0.00 2.57
497 498 1.261480 AGAGCTATCCGGGTGCATAG 58.739 55.000 0.00 2.19 0.00 2.23
498 499 2.168496 GTAGAGCTATCCGGGTGCATA 58.832 52.381 0.00 0.00 0.00 3.14
499 500 0.969894 GTAGAGCTATCCGGGTGCAT 59.030 55.000 0.00 0.00 0.00 3.96
500 501 0.106167 AGTAGAGCTATCCGGGTGCA 60.106 55.000 0.00 0.00 0.00 4.57
501 502 1.041437 AAGTAGAGCTATCCGGGTGC 58.959 55.000 0.00 3.61 0.00 5.01
502 503 3.502979 GTCTAAGTAGAGCTATCCGGGTG 59.497 52.174 0.00 0.00 32.01 4.61
503 504 3.137913 TGTCTAAGTAGAGCTATCCGGGT 59.862 47.826 0.00 0.00 32.01 5.28
504 505 3.502979 GTGTCTAAGTAGAGCTATCCGGG 59.497 52.174 0.00 0.00 32.01 5.73
505 506 3.186817 CGTGTCTAAGTAGAGCTATCCGG 59.813 52.174 0.00 0.00 32.01 5.14
506 507 3.364167 GCGTGTCTAAGTAGAGCTATCCG 60.364 52.174 0.00 0.00 32.01 4.18
507 508 3.058085 GGCGTGTCTAAGTAGAGCTATCC 60.058 52.174 0.00 0.00 32.01 2.59
508 509 3.058085 GGGCGTGTCTAAGTAGAGCTATC 60.058 52.174 0.00 0.00 32.01 2.08
509 510 2.885894 GGGCGTGTCTAAGTAGAGCTAT 59.114 50.000 0.00 0.00 32.01 2.97
510 511 2.295885 GGGCGTGTCTAAGTAGAGCTA 58.704 52.381 0.00 0.00 32.01 3.32
511 512 1.104630 GGGCGTGTCTAAGTAGAGCT 58.895 55.000 0.00 0.00 32.01 4.09
512 513 0.102663 GGGGCGTGTCTAAGTAGAGC 59.897 60.000 0.00 0.00 32.01 4.09
513 514 1.405821 CAGGGGCGTGTCTAAGTAGAG 59.594 57.143 0.00 0.00 32.01 2.43
514 515 1.471119 CAGGGGCGTGTCTAAGTAGA 58.529 55.000 0.00 0.00 0.00 2.59
515 516 0.460311 CCAGGGGCGTGTCTAAGTAG 59.540 60.000 0.00 0.00 0.00 2.57
516 517 1.610554 GCCAGGGGCGTGTCTAAGTA 61.611 60.000 0.00 0.00 39.62 2.24
517 518 2.955881 GCCAGGGGCGTGTCTAAGT 61.956 63.158 0.00 0.00 39.62 2.24
518 519 2.125106 GCCAGGGGCGTGTCTAAG 60.125 66.667 0.00 0.00 39.62 2.18
527 528 1.109323 ATTTAATGAGCGCCAGGGGC 61.109 55.000 21.02 21.02 46.75 5.80
528 529 1.338020 GAATTTAATGAGCGCCAGGGG 59.662 52.381 2.29 0.00 0.00 4.79
529 530 1.002468 CGAATTTAATGAGCGCCAGGG 60.002 52.381 2.29 0.00 0.00 4.45
530 531 1.597937 GCGAATTTAATGAGCGCCAGG 60.598 52.381 2.29 0.00 41.65 4.45
531 532 1.746760 GCGAATTTAATGAGCGCCAG 58.253 50.000 2.29 0.00 41.65 4.85
532 533 3.916061 GCGAATTTAATGAGCGCCA 57.084 47.368 2.29 1.52 41.65 5.69
535 536 5.402568 TCTTAGCTAGCGAATTTAATGAGCG 59.597 40.000 10.87 0.00 33.69 5.03
536 537 6.617529 GCTCTTAGCTAGCGAATTTAATGAGC 60.618 42.308 22.12 22.12 38.45 4.26
548 549 0.872021 CCAACGGCTCTTAGCTAGCG 60.872 60.000 9.55 0.00 41.99 4.26
549 550 1.154814 GCCAACGGCTCTTAGCTAGC 61.155 60.000 6.62 6.62 46.69 3.42
550 551 2.979130 GCCAACGGCTCTTAGCTAG 58.021 57.895 0.00 0.00 46.69 3.42
568 570 1.041437 CCCTTCGGAGTAGGGCTAAG 58.959 60.000 1.86 0.00 45.59 2.18
569 571 3.218974 CCCTTCGGAGTAGGGCTAA 57.781 57.895 1.86 0.00 45.59 3.09
580 582 2.527951 CTTCTGTCCCTGCCCTTCGG 62.528 65.000 0.00 0.00 0.00 4.30
582 584 1.377856 GCTTCTGTCCCTGCCCTTC 60.378 63.158 0.00 0.00 0.00 3.46
586 588 0.176910 GAGTAGCTTCTGTCCCTGCC 59.823 60.000 0.00 0.00 0.00 4.85
594 596 1.813178 TGTCAGGACGAGTAGCTTCTG 59.187 52.381 0.00 0.00 0.00 3.02
602 604 2.050351 CGCGTTGTCAGGACGAGT 60.050 61.111 0.00 0.00 42.82 4.18
615 617 1.997606 ACTTTTTATAAGAGCGCGCGT 59.002 42.857 32.35 18.26 0.00 6.01
618 620 4.091509 ACAGTCACTTTTTATAAGAGCGCG 59.908 41.667 0.00 0.00 0.00 6.86
620 622 6.366332 AGTCACAGTCACTTTTTATAAGAGCG 59.634 38.462 0.00 0.00 0.00 5.03
624 626 8.004344 CGTTCAGTCACAGTCACTTTTTATAAG 58.996 37.037 0.00 0.00 0.00 1.73
635 637 6.483385 TTTTTAAACGTTCAGTCACAGTCA 57.517 33.333 0.00 0.00 0.00 3.41
667 669 1.680338 AAAATGGGATAGGCGTCTGC 58.320 50.000 0.00 0.00 41.71 4.26
668 670 3.545703 AGAAAAATGGGATAGGCGTCTG 58.454 45.455 0.00 0.00 0.00 3.51
670 672 6.262273 TGAATAAGAAAAATGGGATAGGCGTC 59.738 38.462 0.00 0.00 0.00 5.19
671 673 6.039382 GTGAATAAGAAAAATGGGATAGGCGT 59.961 38.462 0.00 0.00 0.00 5.68
672 674 6.039270 TGTGAATAAGAAAAATGGGATAGGCG 59.961 38.462 0.00 0.00 0.00 5.52
677 679 7.427989 AGCATGTGAATAAGAAAAATGGGAT 57.572 32.000 0.00 0.00 0.00 3.85
724 727 0.673985 GCAAAGAAACCGAGGGCTTT 59.326 50.000 0.00 0.00 0.00 3.51
790 793 7.466746 TGCTTTTGCCTATTTCTGAGTATTT 57.533 32.000 0.00 0.00 46.87 1.40
822 825 3.467803 AGACAATTATAGCGAGCCAACC 58.532 45.455 0.00 0.00 0.00 3.77
823 826 3.182572 CGAGACAATTATAGCGAGCCAAC 59.817 47.826 0.00 0.00 0.00 3.77
825 828 2.621526 TCGAGACAATTATAGCGAGCCA 59.378 45.455 0.00 0.00 0.00 4.75
826 829 2.981140 GTCGAGACAATTATAGCGAGCC 59.019 50.000 0.00 0.00 0.00 4.70
827 830 2.652642 CGTCGAGACAATTATAGCGAGC 59.347 50.000 4.02 0.00 0.00 5.03
828 831 3.227147 CCGTCGAGACAATTATAGCGAG 58.773 50.000 4.02 0.00 0.00 5.03
829 832 2.031420 CCCGTCGAGACAATTATAGCGA 60.031 50.000 4.02 0.00 0.00 4.93
830 833 2.287427 ACCCGTCGAGACAATTATAGCG 60.287 50.000 4.02 0.00 0.00 4.26
831 834 3.366440 ACCCGTCGAGACAATTATAGC 57.634 47.619 4.02 0.00 0.00 2.97
832 835 5.428496 TGTACCCGTCGAGACAATTATAG 57.572 43.478 4.02 0.00 0.00 1.31
833 836 5.532032 TCATGTACCCGTCGAGACAATTATA 59.468 40.000 4.02 0.00 0.00 0.98
834 837 4.340097 TCATGTACCCGTCGAGACAATTAT 59.660 41.667 4.02 0.00 0.00 1.28
836 839 2.494471 TCATGTACCCGTCGAGACAATT 59.506 45.455 4.02 0.00 0.00 2.32
837 840 2.097036 TCATGTACCCGTCGAGACAAT 58.903 47.619 4.02 0.00 0.00 2.71
838 841 1.536940 TCATGTACCCGTCGAGACAA 58.463 50.000 4.02 0.00 0.00 3.18
839 842 1.758936 ATCATGTACCCGTCGAGACA 58.241 50.000 4.02 0.00 0.00 3.41
840 843 2.358267 AGAATCATGTACCCGTCGAGAC 59.642 50.000 0.00 0.00 0.00 3.36
841 844 2.651455 AGAATCATGTACCCGTCGAGA 58.349 47.619 0.00 0.00 0.00 4.04
842 845 3.438297 AAGAATCATGTACCCGTCGAG 57.562 47.619 0.00 0.00 0.00 4.04
843 846 3.517602 CAAAGAATCATGTACCCGTCGA 58.482 45.455 0.00 0.00 0.00 4.20
845 848 3.006940 TGCAAAGAATCATGTACCCGTC 58.993 45.455 0.00 0.00 0.00 4.79
846 849 3.066291 TGCAAAGAATCATGTACCCGT 57.934 42.857 0.00 0.00 0.00 5.28
847 850 4.082787 ACTTTGCAAAGAATCATGTACCCG 60.083 41.667 38.78 13.82 39.31 5.28
848 851 5.391312 ACTTTGCAAAGAATCATGTACCC 57.609 39.130 38.78 0.00 39.31 3.69
849 852 6.523201 CGTTACTTTGCAAAGAATCATGTACC 59.477 38.462 38.78 15.72 39.31 3.34
850 853 7.295201 TCGTTACTTTGCAAAGAATCATGTAC 58.705 34.615 38.78 22.32 39.31 2.90
851 854 7.428282 TCGTTACTTTGCAAAGAATCATGTA 57.572 32.000 38.78 20.40 39.31 2.29
852 855 6.312399 TCGTTACTTTGCAAAGAATCATGT 57.688 33.333 38.78 21.35 39.31 3.21
853 856 6.470235 GGATCGTTACTTTGCAAAGAATCATG 59.530 38.462 38.78 24.07 39.31 3.07
854 857 6.404734 GGGATCGTTACTTTGCAAAGAATCAT 60.405 38.462 38.78 23.99 39.31 2.45
899 902 1.535444 TGTCTGGTCATGGGGTCGT 60.535 57.895 0.00 0.00 0.00 4.34
900 903 1.079127 GTGTCTGGTCATGGGGTCG 60.079 63.158 0.00 0.00 0.00 4.79
904 907 0.957395 GCACTGTGTCTGGTCATGGG 60.957 60.000 9.86 0.00 0.00 4.00
905 908 0.957395 GGCACTGTGTCTGGTCATGG 60.957 60.000 9.86 0.00 0.00 3.66
913 916 1.356124 ATTCTCTGGGCACTGTGTCT 58.644 50.000 12.66 0.00 0.00 3.41
968 971 6.349363 GGATTGAATTATAGTTCGGGAATGGC 60.349 42.308 3.81 0.00 0.00 4.40
992 995 3.363724 GGCGAGAAAATTAAGCGTTTTGG 59.636 43.478 0.00 0.00 0.00 3.28
1005 1008 0.250727 CCTGGACCTTGGCGAGAAAA 60.251 55.000 2.43 0.00 0.00 2.29
1006 1009 1.374947 CCTGGACCTTGGCGAGAAA 59.625 57.895 2.43 0.00 0.00 2.52
1045 1048 1.039233 TGCCGTAGTAGTGGTAGGGC 61.039 60.000 6.84 6.84 46.95 5.19
1052 1055 0.810031 GGGTGCATGCCGTAGTAGTG 60.810 60.000 16.68 0.00 0.00 2.74
1087 1090 2.510238 GCAGTTCAGCGCCGAGAT 60.510 61.111 2.29 0.00 0.00 2.75
1160 1163 3.123620 GCAGGCAGCAAGACCGAG 61.124 66.667 0.00 0.00 44.79 4.63
1173 1176 4.729918 AAGCAAGGCGAGGGCAGG 62.730 66.667 0.00 0.00 42.47 4.85
1175 1178 4.269523 ACAAGCAAGGCGAGGGCA 62.270 61.111 0.00 0.00 42.47 5.36
1218 1221 1.153549 GCGGCAGGAAGAAGACGAT 60.154 57.895 0.00 0.00 0.00 3.73
1226 1229 4.335647 ACCACCAGCGGCAGGAAG 62.336 66.667 19.03 10.72 0.00 3.46
1291 1294 4.444081 CCCCTCCCTCCGACGACT 62.444 72.222 0.00 0.00 0.00 4.18
1415 1418 1.363807 GTGCAGAAAACAGCCCACC 59.636 57.895 0.00 0.00 0.00 4.61
1462 1465 3.733960 GTTTCTTCCACCCGCCGC 61.734 66.667 0.00 0.00 0.00 6.53
1481 1484 3.467119 CCGTTCTCGTTGACGCCG 61.467 66.667 0.00 0.00 39.60 6.46
1488 1491 2.567049 CTCCTCGCCGTTCTCGTT 59.433 61.111 0.00 0.00 35.01 3.85
1628 1631 2.206900 TTCCACCCAGAGCTCCCA 59.793 61.111 10.93 0.00 0.00 4.37
1637 1640 1.808531 CGGTCACGTAGTTCCACCCA 61.809 60.000 0.00 0.00 41.61 4.51
1662 1665 1.669604 CTTCGGTCGATCTCCTCAGA 58.330 55.000 0.00 0.00 0.00 3.27
1663 1666 0.030101 GCTTCGGTCGATCTCCTCAG 59.970 60.000 0.00 0.00 0.00 3.35
1707 1710 0.461516 CATGCCATGACGCAGAGAGT 60.462 55.000 0.00 0.00 43.26 3.24
1708 1711 0.461516 ACATGCCATGACGCAGAGAG 60.462 55.000 12.53 0.00 43.26 3.20
1709 1712 0.460811 GACATGCCATGACGCAGAGA 60.461 55.000 12.53 0.00 43.26 3.10
1711 1714 0.107557 ATGACATGCCATGACGCAGA 60.108 50.000 12.53 0.00 43.26 4.26
1712 1715 0.028902 CATGACATGCCATGACGCAG 59.971 55.000 16.25 0.00 44.98 5.18
1713 1716 0.677414 ACATGACATGCCATGACGCA 60.677 50.000 26.34 6.88 44.98 5.24
1714 1717 0.028505 GACATGACATGCCATGACGC 59.971 55.000 26.34 12.34 44.98 5.19
1757 1763 4.994471 TGCACAGCAGAGTGGCGG 62.994 66.667 6.18 0.00 39.87 6.13
1758 1764 2.745100 ATGCACAGCAGAGTGGCG 60.745 61.111 0.00 0.00 43.65 5.69
1759 1765 1.521450 AACATGCACAGCAGAGTGGC 61.521 55.000 0.00 0.00 43.65 5.01
1760 1766 0.240145 CAACATGCACAGCAGAGTGG 59.760 55.000 0.00 0.00 43.65 4.00
1761 1767 0.386858 GCAACATGCACAGCAGAGTG 60.387 55.000 0.00 0.22 43.65 3.51
1762 1768 1.954528 GCAACATGCACAGCAGAGT 59.045 52.632 0.00 0.00 43.65 3.24
1763 1769 4.861883 GCAACATGCACAGCAGAG 57.138 55.556 0.00 0.00 43.65 3.35
1812 1818 9.268268 CGATTATGGAGCCAAATAAACTAAGTA 57.732 33.333 0.00 0.00 0.00 2.24
1813 1819 7.990886 TCGATTATGGAGCCAAATAAACTAAGT 59.009 33.333 0.00 0.00 0.00 2.24
1814 1820 8.283291 GTCGATTATGGAGCCAAATAAACTAAG 58.717 37.037 0.00 0.00 0.00 2.18
1815 1821 7.042321 CGTCGATTATGGAGCCAAATAAACTAA 60.042 37.037 0.00 0.00 0.00 2.24
1901 1907 3.526931 TGGTGATTGACGAGAGGATTC 57.473 47.619 0.00 0.00 0.00 2.52
1920 1926 0.664761 CCAGGCACACAGAGTTGTTG 59.335 55.000 0.00 0.00 34.62 3.33
1923 1929 1.102809 TTGCCAGGCACACAGAGTTG 61.103 55.000 15.89 0.00 38.71 3.16
1981 1988 2.557924 TGCGGATTTCTTGATGCAAAGT 59.442 40.909 0.00 0.00 0.00 2.66
1982 1989 3.220507 TGCGGATTTCTTGATGCAAAG 57.779 42.857 0.00 0.00 0.00 2.77
1983 1990 3.513662 CATGCGGATTTCTTGATGCAAA 58.486 40.909 0.00 0.00 35.78 3.68
1984 1991 2.736081 GCATGCGGATTTCTTGATGCAA 60.736 45.455 0.00 0.00 36.91 4.08
1985 1992 1.202325 GCATGCGGATTTCTTGATGCA 60.202 47.619 0.00 0.00 36.91 3.96
1986 1993 1.066605 AGCATGCGGATTTCTTGATGC 59.933 47.619 13.01 0.00 37.14 3.91
1987 1994 2.601504 CGAGCATGCGGATTTCTTGATG 60.602 50.000 13.01 0.00 0.00 3.07
1988 1995 1.600957 CGAGCATGCGGATTTCTTGAT 59.399 47.619 13.01 0.00 0.00 2.57
2028 2035 4.067192 TGTTCAGATCCGCATAATCCATG 58.933 43.478 0.00 0.00 37.73 3.66
2056 2063 4.173256 CACCCAAGATTATTTTGCGGTTC 58.827 43.478 6.11 0.00 31.23 3.62
2064 2071 1.750778 CGCAGGCACCCAAGATTATTT 59.249 47.619 0.00 0.00 0.00 1.40
2067 2074 0.906066 TACGCAGGCACCCAAGATTA 59.094 50.000 0.00 0.00 0.00 1.75
2080 2087 1.645034 CAGTGGAACCTGATACGCAG 58.355 55.000 0.00 0.00 44.49 5.18
2198 2205 2.222953 CGCGTTGCCTTTATGTTCCTAC 60.223 50.000 0.00 0.00 0.00 3.18
2282 2289 8.696410 AAATTTGTCACGTGAAGTTTGTTATT 57.304 26.923 21.95 8.59 0.00 1.40
2346 2358 2.722116 CGCGCCGAAAGTGTTTTATTTT 59.278 40.909 0.00 0.00 0.00 1.82
2367 2379 6.109359 ACTCATTAGTGCTAGTGGATGTTTC 58.891 40.000 2.64 0.00 33.57 2.78
2408 2424 4.159506 TGTTGCTAAGTTTGAGGTTTGCTT 59.840 37.500 0.00 0.00 0.00 3.91
2415 2431 4.023707 CAGTTCCTGTTGCTAAGTTTGAGG 60.024 45.833 0.00 0.00 0.00 3.86
2456 2472 8.873830 CAAAATTAGTACTCATGACAATCTCGT 58.126 33.333 0.00 0.00 0.00 4.18
2459 2475 8.565896 TGCAAAATTAGTACTCATGACAATCT 57.434 30.769 0.00 0.00 0.00 2.40
2464 2480 8.438676 AGGTATGCAAAATTAGTACTCATGAC 57.561 34.615 0.00 0.00 0.00 3.06
2479 2495 7.065803 GCTCAAGATAAACTGTAGGTATGCAAA 59.934 37.037 0.00 0.00 0.00 3.68
2490 2506 6.488006 AGACATTGTTGCTCAAGATAAACTGT 59.512 34.615 0.00 0.00 39.55 3.55
2503 2520 5.508489 CCATTCTGTTTGAGACATTGTTGCT 60.508 40.000 0.00 0.00 37.69 3.91
2504 2521 4.682860 CCATTCTGTTTGAGACATTGTTGC 59.317 41.667 0.00 0.00 37.69 4.17
2517 2534 6.723298 TTGGTGTCAAATACCATTCTGTTT 57.277 33.333 0.00 0.00 46.81 2.83
2522 2539 7.042797 AGCATATTGGTGTCAAATACCATTC 57.957 36.000 0.00 0.00 46.81 2.67
2552 2569 5.705397 AAGGATCAGATGTTCCATGAGAA 57.295 39.130 11.53 0.00 36.59 2.87
2587 2604 3.324846 TGGTTTGTGATAGTCAGAGTGCT 59.675 43.478 0.00 0.00 0.00 4.40
2630 2648 2.736721 GTTCGTATGCTGAGCTTTGTGA 59.263 45.455 5.83 0.00 0.00 3.58
2670 2691 6.677781 TGGCTATTACAGAAGCATGTAAAC 57.322 37.500 11.61 6.29 45.91 2.01
2725 2746 3.655481 GCAACGCTGTAGCCAGTT 58.345 55.556 0.00 0.00 41.02 3.16
2736 2757 0.729140 CGTGATTTGAAGGGCAACGC 60.729 55.000 0.00 0.00 35.91 4.84
2746 2770 0.589223 GTGGTTTCGCCGTGATTTGA 59.411 50.000 0.00 0.00 41.21 2.69
2780 2804 3.890756 TGGCTCTTTAATGTATGGCATGG 59.109 43.478 10.98 0.00 37.96 3.66
2781 2805 5.163530 TGTTGGCTCTTTAATGTATGGCATG 60.164 40.000 10.98 0.00 37.96 4.06
2782 2806 4.955450 TGTTGGCTCTTTAATGTATGGCAT 59.045 37.500 4.88 4.88 40.03 4.40
2783 2807 4.339748 TGTTGGCTCTTTAATGTATGGCA 58.660 39.130 0.00 0.00 0.00 4.92
2784 2808 4.981806 TGTTGGCTCTTTAATGTATGGC 57.018 40.909 0.00 0.00 0.00 4.40
2785 2809 6.092748 GTGTTGTTGGCTCTTTAATGTATGG 58.907 40.000 0.00 0.00 0.00 2.74
2786 2810 6.092748 GGTGTTGTTGGCTCTTTAATGTATG 58.907 40.000 0.00 0.00 0.00 2.39
2787 2811 5.106317 CGGTGTTGTTGGCTCTTTAATGTAT 60.106 40.000 0.00 0.00 0.00 2.29
2788 2812 4.214545 CGGTGTTGTTGGCTCTTTAATGTA 59.785 41.667 0.00 0.00 0.00 2.29
2789 2813 3.004315 CGGTGTTGTTGGCTCTTTAATGT 59.996 43.478 0.00 0.00 0.00 2.71
2790 2814 3.564511 CGGTGTTGTTGGCTCTTTAATG 58.435 45.455 0.00 0.00 0.00 1.90
2791 2815 2.556622 CCGGTGTTGTTGGCTCTTTAAT 59.443 45.455 0.00 0.00 0.00 1.40
2792 2816 1.950909 CCGGTGTTGTTGGCTCTTTAA 59.049 47.619 0.00 0.00 0.00 1.52
2793 2817 1.141254 TCCGGTGTTGTTGGCTCTTTA 59.859 47.619 0.00 0.00 0.00 1.85
2794 2818 0.106918 TCCGGTGTTGTTGGCTCTTT 60.107 50.000 0.00 0.00 0.00 2.52
2795 2819 0.818040 GTCCGGTGTTGTTGGCTCTT 60.818 55.000 0.00 0.00 0.00 2.85
2796 2820 1.227853 GTCCGGTGTTGTTGGCTCT 60.228 57.895 0.00 0.00 0.00 4.09
2797 2821 0.034337 TAGTCCGGTGTTGTTGGCTC 59.966 55.000 0.00 0.00 0.00 4.70
2798 2822 0.690762 ATAGTCCGGTGTTGTTGGCT 59.309 50.000 0.00 0.00 0.00 4.75
2799 2823 2.093869 TCTATAGTCCGGTGTTGTTGGC 60.094 50.000 0.00 0.00 0.00 4.52
2800 2824 3.880047 TCTATAGTCCGGTGTTGTTGG 57.120 47.619 0.00 0.00 0.00 3.77
2801 2825 4.817517 AGTTCTATAGTCCGGTGTTGTTG 58.182 43.478 0.00 0.00 0.00 3.33
2802 2826 5.479124 AAGTTCTATAGTCCGGTGTTGTT 57.521 39.130 0.00 0.00 0.00 2.83
2803 2827 5.479124 AAAGTTCTATAGTCCGGTGTTGT 57.521 39.130 0.00 0.00 0.00 3.32
2804 2828 5.929992 TCAAAAGTTCTATAGTCCGGTGTTG 59.070 40.000 0.00 0.00 0.00 3.33
2805 2829 5.930569 GTCAAAAGTTCTATAGTCCGGTGTT 59.069 40.000 0.00 0.00 0.00 3.32
2806 2830 5.011329 TGTCAAAAGTTCTATAGTCCGGTGT 59.989 40.000 0.00 0.00 0.00 4.16
2807 2831 5.475719 TGTCAAAAGTTCTATAGTCCGGTG 58.524 41.667 0.00 0.00 0.00 4.94
2808 2832 5.733620 TGTCAAAAGTTCTATAGTCCGGT 57.266 39.130 0.00 0.00 0.00 5.28
2816 2840 9.354673 CCCCAACATATATGTCAAAAGTTCTAT 57.645 33.333 18.52 0.00 40.80 1.98
2817 2841 8.553153 TCCCCAACATATATGTCAAAAGTTCTA 58.447 33.333 18.52 0.00 40.80 2.10
2818 2842 7.410174 TCCCCAACATATATGTCAAAAGTTCT 58.590 34.615 18.52 0.00 40.80 3.01
2819 2843 7.639113 TCCCCAACATATATGTCAAAAGTTC 57.361 36.000 18.52 0.00 40.80 3.01
2820 2844 8.477256 CATTCCCCAACATATATGTCAAAAGTT 58.523 33.333 18.52 0.00 40.80 2.66
2821 2845 7.619302 ACATTCCCCAACATATATGTCAAAAGT 59.381 33.333 18.52 8.96 40.80 2.66
2822 2846 8.010733 ACATTCCCCAACATATATGTCAAAAG 57.989 34.615 18.52 7.50 40.80 2.27
2823 2847 7.969690 ACATTCCCCAACATATATGTCAAAA 57.030 32.000 18.52 9.45 40.80 2.44
2824 2848 8.278639 ACTACATTCCCCAACATATATGTCAAA 58.721 33.333 18.52 9.14 40.80 2.69
2825 2849 7.811282 ACTACATTCCCCAACATATATGTCAA 58.189 34.615 18.52 7.50 40.80 3.18
2826 2850 7.387265 ACTACATTCCCCAACATATATGTCA 57.613 36.000 18.52 0.46 40.80 3.58
2827 2851 9.959721 ATTACTACATTCCCCAACATATATGTC 57.040 33.333 18.52 0.00 40.80 3.06
2832 2856 9.707957 TTTGAATTACTACATTCCCCAACATAT 57.292 29.630 0.00 0.00 32.86 1.78
2833 2857 9.535170 TTTTGAATTACTACATTCCCCAACATA 57.465 29.630 0.00 0.00 32.86 2.29
2834 2858 8.429237 TTTTGAATTACTACATTCCCCAACAT 57.571 30.769 0.00 0.00 32.86 2.71
2835 2859 7.841282 TTTTGAATTACTACATTCCCCAACA 57.159 32.000 0.00 0.00 32.86 3.33
2857 2881 5.180492 TCTTGCGTGATCGTAGGAAATTTTT 59.820 36.000 0.00 0.00 35.34 1.94
2858 2882 4.693566 TCTTGCGTGATCGTAGGAAATTTT 59.306 37.500 0.00 0.00 35.34 1.82
2859 2883 4.250464 TCTTGCGTGATCGTAGGAAATTT 58.750 39.130 0.00 0.00 35.34 1.82
2860 2884 3.857052 TCTTGCGTGATCGTAGGAAATT 58.143 40.909 0.00 0.00 35.34 1.82
2861 2885 3.520290 TCTTGCGTGATCGTAGGAAAT 57.480 42.857 0.00 0.00 35.34 2.17
2862 2886 3.130516 AGATCTTGCGTGATCGTAGGAAA 59.869 43.478 11.44 0.00 45.35 3.13
2863 2887 2.688446 AGATCTTGCGTGATCGTAGGAA 59.312 45.455 11.44 0.00 45.35 3.36
2864 2888 2.298610 AGATCTTGCGTGATCGTAGGA 58.701 47.619 11.44 0.00 45.35 2.94
2865 2889 2.783828 AGATCTTGCGTGATCGTAGG 57.216 50.000 11.44 0.00 45.35 3.18
2866 2890 5.289917 AGATAGATCTTGCGTGATCGTAG 57.710 43.478 0.00 0.00 45.35 3.51
2867 2891 5.351740 CCTAGATAGATCTTGCGTGATCGTA 59.648 44.000 0.00 6.70 45.35 3.43
2868 2892 4.155099 CCTAGATAGATCTTGCGTGATCGT 59.845 45.833 0.00 6.35 45.35 3.73
2869 2893 4.393371 TCCTAGATAGATCTTGCGTGATCG 59.607 45.833 0.00 0.00 45.35 3.69
2870 2894 5.645929 TCTCCTAGATAGATCTTGCGTGATC 59.354 44.000 0.00 9.82 42.18 2.92
2871 2895 5.565509 TCTCCTAGATAGATCTTGCGTGAT 58.434 41.667 0.00 0.00 38.32 3.06
2872 2896 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.