Multiple sequence alignment - TraesCS3D01G174800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G174800 chr3D 100.000 3799 0 0 1 3799 156726357 156722559 0.000000e+00 7016
1 TraesCS3D01G174800 chr3D 95.111 225 10 1 3575 3799 533612923 533612700 1.680000e-93 353
2 TraesCS3D01G174800 chr3D 95.918 98 4 0 3478 3575 29509131 29509034 3.930000e-35 159
3 TraesCS3D01G174800 chr3D 95.918 98 4 0 3478 3575 29597107 29597010 3.930000e-35 159
4 TraesCS3D01G174800 chr3D 95.918 98 4 0 3478 3575 29602415 29602318 3.930000e-35 159
5 TraesCS3D01G174800 chr3D 95.000 100 5 0 3476 3575 590296236 590296137 1.410000e-34 158
6 TraesCS3D01G174800 chr3B 94.710 2703 86 24 769 3430 227666216 227663530 0.000000e+00 4146
7 TraesCS3D01G174800 chr3B 94.881 293 10 2 480 767 227666539 227666247 1.610000e-123 453
8 TraesCS3D01G174800 chr3A 93.747 1967 75 18 179 2125 171548297 171550235 0.000000e+00 2907
9 TraesCS3D01G174800 chr3A 93.750 1344 39 18 2123 3430 171550326 171551660 0.000000e+00 1975
10 TraesCS3D01G174800 chr6D 96.000 225 9 0 3575 3799 257917232 257917008 2.160000e-97 366
11 TraesCS3D01G174800 chr5D 95.111 225 11 0 3575 3799 517115398 517115174 4.670000e-94 355
12 TraesCS3D01G174800 chr5D 94.348 230 9 2 3574 3799 497228084 497227855 2.170000e-92 350
13 TraesCS3D01G174800 chr5D 87.586 145 16 2 3560 3703 4982680 4982823 2.350000e-37 167
14 TraesCS3D01G174800 chr5D 91.743 109 7 1 3467 3575 333977912 333977806 2.360000e-32 150
15 TraesCS3D01G174800 chr4D 95.111 225 11 0 3575 3799 11220379 11220603 4.670000e-94 355
16 TraesCS3D01G174800 chr1D 94.714 227 10 1 3575 3799 33880014 33879788 6.040000e-93 351
17 TraesCS3D01G174800 chr1D 94.714 227 10 2 3575 3799 373586424 373586650 6.040000e-93 351
18 TraesCS3D01G174800 chr1D 90.385 156 11 4 3550 3703 474935688 474935841 6.430000e-48 202
19 TraesCS3D01G174800 chr1D 97.895 95 2 0 3481 3575 326525946 326526040 8.440000e-37 165
20 TraesCS3D01G174800 chr2D 94.323 229 9 1 3575 3799 62585439 62585211 7.810000e-92 348
21 TraesCS3D01G174800 chr2D 93.277 238 13 1 3565 3799 473261062 473261299 7.810000e-92 348
22 TraesCS3D01G174800 chr2D 88.028 142 17 0 3562 3703 83306725 83306866 6.530000e-38 169
23 TraesCS3D01G174800 chr2D 87.324 142 18 0 3562 3703 83301339 83301480 3.040000e-36 163
24 TraesCS3D01G174800 chr7D 91.736 242 16 2 3562 3799 633287261 633287020 2.190000e-87 333
25 TraesCS3D01G174800 chr7D 90.278 144 10 4 3562 3703 70234943 70235084 6.480000e-43 185
26 TraesCS3D01G174800 chr6A 85.542 166 19 4 3561 3723 226362045 226361882 6.530000e-38 169
27 TraesCS3D01G174800 chrUn 95.918 98 4 0 3478 3575 299705531 299705628 3.930000e-35 159
28 TraesCS3D01G174800 chrUn 95.918 98 4 0 3478 3575 299706023 299706120 3.930000e-35 159
29 TraesCS3D01G174800 chrUn 95.918 98 4 0 3478 3575 352730099 352730196 3.930000e-35 159
30 TraesCS3D01G174800 chr4B 86.301 146 17 2 3561 3706 509059341 509059483 5.080000e-34 156
31 TraesCS3D01G174800 chr1A 83.333 168 21 6 3559 3723 4969085 4969248 8.500000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G174800 chr3D 156722559 156726357 3798 True 7016.0 7016 100.0000 1 3799 1 chr3D.!!$R4 3798
1 TraesCS3D01G174800 chr3B 227663530 227666539 3009 True 2299.5 4146 94.7955 480 3430 2 chr3B.!!$R1 2950
2 TraesCS3D01G174800 chr3A 171548297 171551660 3363 False 2441.0 2907 93.7485 179 3430 2 chr3A.!!$F1 3251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.117140 TCTCACCATCTCCCCACAGT 59.883 55.0 0.00 0.0 0.0 3.55 F
1048 1115 0.105964 CTGTGTCTCCCAACCGTTGA 59.894 55.0 13.04 0.0 0.0 3.18 F
1107 1174 0.310543 GCACCATGTTGAAAGCGTCA 59.689 50.0 0.00 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2158 0.033228 GATGGATGGAGAGACGCTGG 59.967 60.000 0.00 0.00 0.0 4.85 R
2514 2706 1.081906 CCTGCATGCGACACAACAC 60.082 57.895 14.09 0.00 0.0 3.32 R
2887 3081 3.247442 CGATCCTGCTGTACGTACAAAA 58.753 45.455 27.16 17.46 35.5 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.409312 CAAAAGAATACAAACATAATGAGCACA 57.591 29.630 0.00 0.00 0.00 4.57
28 29 9.577110 AAAGAATACAAACATAATGAGCACATG 57.423 29.630 0.00 0.00 36.79 3.21
29 30 7.198390 AGAATACAAACATAATGAGCACATGC 58.802 34.615 0.00 0.00 42.49 4.06
30 31 4.114058 ACAAACATAATGAGCACATGCC 57.886 40.909 0.00 0.00 43.38 4.40
31 32 3.765511 ACAAACATAATGAGCACATGCCT 59.234 39.130 0.00 0.00 43.38 4.75
32 33 4.142315 ACAAACATAATGAGCACATGCCTC 60.142 41.667 0.00 6.95 43.38 4.70
33 34 3.572632 ACATAATGAGCACATGCCTCT 57.427 42.857 13.28 0.00 43.38 3.69
34 35 3.211865 ACATAATGAGCACATGCCTCTG 58.788 45.455 13.28 7.22 43.38 3.35
35 36 1.671979 TAATGAGCACATGCCTCTGC 58.328 50.000 13.28 6.71 43.38 4.26
77 78 8.947055 AAAAACACTCTGTCAAATAGCAAAAT 57.053 26.923 0.00 0.00 0.00 1.82
78 79 8.947055 AAAACACTCTGTCAAATAGCAAAATT 57.053 26.923 0.00 0.00 0.00 1.82
94 95 9.726438 ATAGCAAAATTATATAAGACCGAAGCT 57.274 29.630 1.02 6.55 0.00 3.74
96 97 9.726438 AGCAAAATTATATAAGACCGAAGCTAT 57.274 29.630 1.02 0.00 0.00 2.97
97 98 9.760660 GCAAAATTATATAAGACCGAAGCTATG 57.239 33.333 1.02 0.00 0.00 2.23
104 105 3.719173 AGACCGAAGCTATGTCTAAGC 57.281 47.619 10.11 0.00 37.58 3.09
105 106 2.033550 AGACCGAAGCTATGTCTAAGCG 59.966 50.000 10.11 0.00 44.87 4.68
106 107 1.749634 ACCGAAGCTATGTCTAAGCGT 59.250 47.619 0.00 0.00 44.87 5.07
107 108 2.120232 CCGAAGCTATGTCTAAGCGTG 58.880 52.381 0.00 0.00 44.87 5.34
108 109 2.120232 CGAAGCTATGTCTAAGCGTGG 58.880 52.381 0.00 0.00 44.87 4.94
109 110 2.223502 CGAAGCTATGTCTAAGCGTGGA 60.224 50.000 0.00 0.00 44.87 4.02
110 111 3.733988 CGAAGCTATGTCTAAGCGTGGAA 60.734 47.826 0.00 0.00 44.87 3.53
111 112 3.887621 AGCTATGTCTAAGCGTGGAAA 57.112 42.857 0.00 0.00 44.87 3.13
112 113 4.202245 AGCTATGTCTAAGCGTGGAAAA 57.798 40.909 0.00 0.00 44.87 2.29
113 114 4.575885 AGCTATGTCTAAGCGTGGAAAAA 58.424 39.130 0.00 0.00 44.87 1.94
135 136 6.817765 AAAATCCAAAGCGACTAAATCTCA 57.182 33.333 0.00 0.00 0.00 3.27
136 137 5.803020 AATCCAAAGCGACTAAATCTCAC 57.197 39.130 0.00 0.00 0.00 3.51
137 138 3.596214 TCCAAAGCGACTAAATCTCACC 58.404 45.455 0.00 0.00 0.00 4.02
138 139 3.007506 TCCAAAGCGACTAAATCTCACCA 59.992 43.478 0.00 0.00 0.00 4.17
139 140 3.941483 CCAAAGCGACTAAATCTCACCAT 59.059 43.478 0.00 0.00 0.00 3.55
140 141 4.034510 CCAAAGCGACTAAATCTCACCATC 59.965 45.833 0.00 0.00 0.00 3.51
141 142 4.744795 AAGCGACTAAATCTCACCATCT 57.255 40.909 0.00 0.00 0.00 2.90
142 143 4.314740 AGCGACTAAATCTCACCATCTC 57.685 45.455 0.00 0.00 0.00 2.75
143 144 3.068873 AGCGACTAAATCTCACCATCTCC 59.931 47.826 0.00 0.00 0.00 3.71
144 145 3.800604 GCGACTAAATCTCACCATCTCCC 60.801 52.174 0.00 0.00 0.00 4.30
145 146 3.243907 CGACTAAATCTCACCATCTCCCC 60.244 52.174 0.00 0.00 0.00 4.81
146 147 3.711704 GACTAAATCTCACCATCTCCCCA 59.288 47.826 0.00 0.00 0.00 4.96
147 148 3.456277 ACTAAATCTCACCATCTCCCCAC 59.544 47.826 0.00 0.00 0.00 4.61
148 149 1.971149 AATCTCACCATCTCCCCACA 58.029 50.000 0.00 0.00 0.00 4.17
149 150 1.504912 ATCTCACCATCTCCCCACAG 58.495 55.000 0.00 0.00 0.00 3.66
150 151 0.117140 TCTCACCATCTCCCCACAGT 59.883 55.000 0.00 0.00 0.00 3.55
151 152 0.987294 CTCACCATCTCCCCACAGTT 59.013 55.000 0.00 0.00 0.00 3.16
152 153 0.984230 TCACCATCTCCCCACAGTTC 59.016 55.000 0.00 0.00 0.00 3.01
153 154 0.692476 CACCATCTCCCCACAGTTCA 59.308 55.000 0.00 0.00 0.00 3.18
154 155 1.283029 CACCATCTCCCCACAGTTCAT 59.717 52.381 0.00 0.00 0.00 2.57
155 156 2.505407 CACCATCTCCCCACAGTTCATA 59.495 50.000 0.00 0.00 0.00 2.15
156 157 3.054434 CACCATCTCCCCACAGTTCATAA 60.054 47.826 0.00 0.00 0.00 1.90
157 158 3.591527 ACCATCTCCCCACAGTTCATAAA 59.408 43.478 0.00 0.00 0.00 1.40
158 159 3.947834 CCATCTCCCCACAGTTCATAAAC 59.052 47.826 0.00 0.00 35.50 2.01
159 160 3.713826 TCTCCCCACAGTTCATAAACC 57.286 47.619 0.00 0.00 35.92 3.27
160 161 2.307686 TCTCCCCACAGTTCATAAACCC 59.692 50.000 0.00 0.00 35.92 4.11
161 162 1.356398 TCCCCACAGTTCATAAACCCC 59.644 52.381 0.00 0.00 35.92 4.95
162 163 1.618616 CCCCACAGTTCATAAACCCCC 60.619 57.143 0.00 0.00 35.92 5.40
163 164 1.076350 CCCACAGTTCATAAACCCCCA 59.924 52.381 0.00 0.00 35.92 4.96
164 165 2.167662 CCACAGTTCATAAACCCCCAC 58.832 52.381 0.00 0.00 35.92 4.61
165 166 2.489985 CCACAGTTCATAAACCCCCACA 60.490 50.000 0.00 0.00 35.92 4.17
166 167 3.226777 CACAGTTCATAAACCCCCACAA 58.773 45.455 0.00 0.00 35.92 3.33
167 168 3.831911 CACAGTTCATAAACCCCCACAAT 59.168 43.478 0.00 0.00 35.92 2.71
168 169 5.013547 CACAGTTCATAAACCCCCACAATA 58.986 41.667 0.00 0.00 35.92 1.90
169 170 5.014202 ACAGTTCATAAACCCCCACAATAC 58.986 41.667 0.00 0.00 35.92 1.89
170 171 5.013547 CAGTTCATAAACCCCCACAATACA 58.986 41.667 0.00 0.00 35.92 2.29
171 172 5.478679 CAGTTCATAAACCCCCACAATACAA 59.521 40.000 0.00 0.00 35.92 2.41
172 173 5.714806 AGTTCATAAACCCCCACAATACAAG 59.285 40.000 0.00 0.00 35.92 3.16
173 174 5.263872 TCATAAACCCCCACAATACAAGT 57.736 39.130 0.00 0.00 0.00 3.16
174 175 5.646215 TCATAAACCCCCACAATACAAGTT 58.354 37.500 0.00 0.00 0.00 2.66
175 176 6.078664 TCATAAACCCCCACAATACAAGTTT 58.921 36.000 0.00 0.00 0.00 2.66
176 177 6.555360 TCATAAACCCCCACAATACAAGTTTT 59.445 34.615 0.00 0.00 0.00 2.43
177 178 4.948341 AACCCCCACAATACAAGTTTTC 57.052 40.909 0.00 0.00 0.00 2.29
182 183 4.459337 CCCCACAATACAAGTTTTCTCTCC 59.541 45.833 0.00 0.00 0.00 3.71
197 198 4.647564 TCTCTCCTTGGCAGAGAATTTT 57.352 40.909 7.72 0.00 42.85 1.82
198 199 4.990526 TCTCTCCTTGGCAGAGAATTTTT 58.009 39.130 7.72 0.00 42.85 1.94
203 204 5.786311 TCCTTGGCAGAGAATTTTTGAATG 58.214 37.500 0.00 0.00 0.00 2.67
208 209 7.481275 TGGCAGAGAATTTTTGAATGAAAAC 57.519 32.000 0.00 0.00 33.09 2.43
277 282 0.776810 TGGAACCTCTTCAATGGGCA 59.223 50.000 0.00 0.00 0.00 5.36
278 283 1.177401 GGAACCTCTTCAATGGGCAC 58.823 55.000 0.00 0.00 0.00 5.01
282 287 1.076024 ACCTCTTCAATGGGCACATGT 59.924 47.619 0.00 0.00 37.40 3.21
287 292 3.953612 TCTTCAATGGGCACATGTATTCC 59.046 43.478 0.00 0.93 37.40 3.01
288 293 2.296792 TCAATGGGCACATGTATTCCG 58.703 47.619 0.00 0.00 37.40 4.30
293 298 2.703536 TGGGCACATGTATTCCGAGTAT 59.296 45.455 0.00 0.00 0.00 2.12
297 302 5.057149 GGCACATGTATTCCGAGTATCTTT 58.943 41.667 0.00 0.00 0.00 2.52
298 303 5.050091 GGCACATGTATTCCGAGTATCTTTG 60.050 44.000 0.00 0.00 0.00 2.77
332 341 9.790297 AAATATAGGTACTCCCACTATCATGAT 57.210 33.333 13.81 13.81 41.75 2.45
338 347 4.458397 ACTCCCACTATCATGATTTGCAG 58.542 43.478 14.65 7.59 0.00 4.41
341 350 2.295349 CCACTATCATGATTTGCAGGGC 59.705 50.000 14.65 0.00 0.00 5.19
343 352 3.252701 CACTATCATGATTTGCAGGGCTC 59.747 47.826 14.65 0.00 0.00 4.70
344 353 2.447408 ATCATGATTTGCAGGGCTCA 57.553 45.000 1.18 0.00 0.00 4.26
353 362 1.683943 TGCAGGGCTCATAGCATTTC 58.316 50.000 0.78 0.00 44.75 2.17
361 370 7.267128 CAGGGCTCATAGCATTTCAATAAAAA 58.733 34.615 0.78 0.00 44.75 1.94
438 448 7.107639 TGTCATTATATTCACGTCCAAGAGA 57.892 36.000 0.00 0.00 0.00 3.10
467 481 4.406069 CAGTGACATAATTTCTGTTGCCG 58.594 43.478 0.00 0.00 0.00 5.69
507 521 0.608035 TCGGTGACTTGGGCATTTCC 60.608 55.000 0.00 0.00 0.00 3.13
550 565 5.994054 ACATCGAATCATACAAAGGATGGAG 59.006 40.000 0.00 0.00 35.36 3.86
627 646 4.080751 TGGTACCCTACAGAAAGCCATTAC 60.081 45.833 10.07 0.00 0.00 1.89
688 707 5.468540 AGCCAAGAATACTTTCCCAAAAC 57.531 39.130 0.00 0.00 33.70 2.43
986 1038 1.654774 CCTTCCATCGCTCGATCGA 59.345 57.895 18.32 18.32 43.09 3.59
987 1039 0.661780 CCTTCCATCGCTCGATCGAC 60.662 60.000 15.15 10.43 41.62 4.20
988 1040 0.661780 CTTCCATCGCTCGATCGACC 60.662 60.000 15.15 7.08 41.62 4.79
989 1041 2.388494 TTCCATCGCTCGATCGACCG 62.388 60.000 23.37 23.37 41.62 4.79
1031 1098 4.844349 TCTCAGATTCCCTTAAACCCTG 57.156 45.455 0.00 0.00 0.00 4.45
1032 1099 4.175962 TCTCAGATTCCCTTAAACCCTGT 58.824 43.478 0.00 0.00 0.00 4.00
1033 1100 4.019321 TCTCAGATTCCCTTAAACCCTGTG 60.019 45.833 0.00 0.00 0.00 3.66
1034 1101 3.655777 TCAGATTCCCTTAAACCCTGTGT 59.344 43.478 0.00 0.00 0.00 3.72
1035 1102 4.010349 CAGATTCCCTTAAACCCTGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
1036 1103 3.916989 AGATTCCCTTAAACCCTGTGTCT 59.083 43.478 0.00 0.00 0.00 3.41
1037 1104 3.782656 TTCCCTTAAACCCTGTGTCTC 57.217 47.619 0.00 0.00 0.00 3.36
1038 1105 1.982958 TCCCTTAAACCCTGTGTCTCC 59.017 52.381 0.00 0.00 0.00 3.71
1039 1106 1.004394 CCCTTAAACCCTGTGTCTCCC 59.996 57.143 0.00 0.00 0.00 4.30
1040 1107 1.702957 CCTTAAACCCTGTGTCTCCCA 59.297 52.381 0.00 0.00 0.00 4.37
1041 1108 2.107552 CCTTAAACCCTGTGTCTCCCAA 59.892 50.000 0.00 0.00 0.00 4.12
1042 1109 2.943036 TAAACCCTGTGTCTCCCAAC 57.057 50.000 0.00 0.00 0.00 3.77
1043 1110 0.185175 AAACCCTGTGTCTCCCAACC 59.815 55.000 0.00 0.00 0.00 3.77
1044 1111 2.052047 AACCCTGTGTCTCCCAACCG 62.052 60.000 0.00 0.00 0.00 4.44
1045 1112 2.516888 CCCTGTGTCTCCCAACCGT 61.517 63.158 0.00 0.00 0.00 4.83
1048 1115 0.105964 CTGTGTCTCCCAACCGTTGA 59.894 55.000 13.04 0.00 0.00 3.18
1051 1118 2.027625 GTCTCCCAACCGTTGAGCG 61.028 63.158 13.04 0.00 40.95 5.03
1107 1174 0.310543 GCACCATGTTGAAAGCGTCA 59.689 50.000 0.00 0.00 0.00 4.35
1108 1175 1.925946 GCACCATGTTGAAAGCGTCAC 60.926 52.381 0.00 0.00 35.39 3.67
1191 1258 0.389391 CGGGATACTTCCGCATCAGT 59.611 55.000 0.00 0.00 43.63 3.41
1197 1264 1.817099 CTTCCGCATCAGTCTGGCC 60.817 63.158 0.00 0.00 0.00 5.36
1338 1405 2.811317 CTCACCCTGTTCGCGCTC 60.811 66.667 5.56 0.00 0.00 5.03
2075 2147 0.462581 GCGTTCCATGCATCCTCTGA 60.463 55.000 0.00 0.00 0.00 3.27
2086 2158 3.055530 TGCATCCTCTGAGAGACTTTTCC 60.056 47.826 11.82 0.00 0.00 3.13
2197 2379 2.615912 GAGATTGCTAGCATGTTGTCCC 59.384 50.000 20.13 0.00 0.00 4.46
2231 2414 1.475403 ACCAGGATCGTGTAGGTCTG 58.525 55.000 13.98 0.02 0.00 3.51
2254 2437 4.742201 CGCCACTAGCTGCCACGT 62.742 66.667 0.00 0.00 40.39 4.49
2277 2460 4.454847 TGAACTGTAAACTCGATCGTCTCT 59.545 41.667 15.94 1.53 0.00 3.10
2444 2632 3.181487 GGACGCATTGCCAACTAATCATT 60.181 43.478 2.41 0.00 0.00 2.57
2514 2706 6.787085 AGAGAGAGACGTAAACATTTTTGG 57.213 37.500 0.00 0.00 0.00 3.28
2978 3184 1.154672 GTGTGCGCGTGTACATGTG 60.155 57.895 22.48 21.74 42.79 3.21
3136 3342 2.430610 GGTGCGAGGAGAGCTGGAT 61.431 63.158 0.00 0.00 35.28 3.41
3205 3414 2.357517 GTGGTCCTCACGTGGCTG 60.358 66.667 17.00 6.44 36.56 4.85
3262 3471 3.238232 GGACAGCTCATGTGCTTGA 57.762 52.632 19.25 0.00 46.10 3.02
3396 3620 4.062032 GGCTTCCCACCCCCTTCC 62.062 72.222 0.00 0.00 0.00 3.46
3430 3654 2.744243 GCTGCCTGAGGAGCCTGAT 61.744 63.158 0.65 0.00 0.00 2.90
3431 3655 1.146485 CTGCCTGAGGAGCCTGATG 59.854 63.158 0.65 0.00 0.00 3.07
3432 3656 1.306397 TGCCTGAGGAGCCTGATGA 60.306 57.895 0.65 0.00 0.00 2.92
3433 3657 1.145819 GCCTGAGGAGCCTGATGAC 59.854 63.158 0.65 0.00 0.00 3.06
3434 3658 1.336632 GCCTGAGGAGCCTGATGACT 61.337 60.000 0.65 0.00 0.00 3.41
3435 3659 0.464870 CCTGAGGAGCCTGATGACTG 59.535 60.000 0.00 0.00 0.00 3.51
3436 3660 0.464870 CTGAGGAGCCTGATGACTGG 59.535 60.000 0.00 0.00 38.02 4.00
3437 3661 0.979709 TGAGGAGCCTGATGACTGGG 60.980 60.000 0.00 0.00 35.96 4.45
3438 3662 0.689080 GAGGAGCCTGATGACTGGGA 60.689 60.000 0.00 0.00 35.96 4.37
3439 3663 0.252881 AGGAGCCTGATGACTGGGAA 60.253 55.000 0.00 0.00 35.96 3.97
3440 3664 0.107459 GGAGCCTGATGACTGGGAAC 60.107 60.000 0.00 0.00 35.96 3.62
3455 3679 2.081462 GGGAACCGTGATTGTTAGTGG 58.919 52.381 0.00 0.00 40.86 4.00
3456 3680 1.467342 GGAACCGTGATTGTTAGTGGC 59.533 52.381 0.00 0.00 0.00 5.01
3457 3681 1.467342 GAACCGTGATTGTTAGTGGCC 59.533 52.381 0.00 0.00 0.00 5.36
3458 3682 0.690762 ACCGTGATTGTTAGTGGCCT 59.309 50.000 3.32 0.00 0.00 5.19
3459 3683 1.338769 ACCGTGATTGTTAGTGGCCTC 60.339 52.381 3.32 0.00 0.00 4.70
3460 3684 1.338674 CCGTGATTGTTAGTGGCCTCA 60.339 52.381 3.32 0.00 0.00 3.86
3461 3685 2.002586 CGTGATTGTTAGTGGCCTCAG 58.997 52.381 3.32 0.00 0.00 3.35
3462 3686 1.740025 GTGATTGTTAGTGGCCTCAGC 59.260 52.381 3.32 0.00 38.76 4.26
3480 3704 2.425578 GCCGGTGCTTCTCTATACTC 57.574 55.000 1.90 0.00 33.53 2.59
3481 3705 1.681793 GCCGGTGCTTCTCTATACTCA 59.318 52.381 1.90 0.00 33.53 3.41
3482 3706 2.544069 GCCGGTGCTTCTCTATACTCAC 60.544 54.545 1.90 0.00 33.53 3.51
3483 3707 2.952978 CCGGTGCTTCTCTATACTCACT 59.047 50.000 0.00 0.00 0.00 3.41
3484 3708 4.135306 CCGGTGCTTCTCTATACTCACTA 58.865 47.826 0.00 0.00 0.00 2.74
3485 3709 4.214545 CCGGTGCTTCTCTATACTCACTAG 59.785 50.000 0.00 0.00 0.00 2.57
3486 3710 4.817464 CGGTGCTTCTCTATACTCACTAGT 59.183 45.833 0.00 0.00 39.91 2.57
3487 3711 5.990386 CGGTGCTTCTCTATACTCACTAGTA 59.010 44.000 0.00 0.00 42.35 1.82
3488 3712 6.146510 CGGTGCTTCTCTATACTCACTAGTAG 59.853 46.154 0.00 0.00 41.46 2.57
3489 3713 7.218614 GGTGCTTCTCTATACTCACTAGTAGA 58.781 42.308 3.59 0.00 41.46 2.59
3490 3714 7.716123 GGTGCTTCTCTATACTCACTAGTAGAA 59.284 40.741 3.59 0.00 41.46 2.10
3491 3715 9.111613 GTGCTTCTCTATACTCACTAGTAGAAA 57.888 37.037 3.59 0.00 41.46 2.52
3492 3716 9.682465 TGCTTCTCTATACTCACTAGTAGAAAA 57.318 33.333 3.59 0.00 41.46 2.29
3496 3720 9.629878 TCTCTATACTCACTAGTAGAAAAAGGG 57.370 37.037 3.59 0.00 41.46 3.95
3497 3721 9.411189 CTCTATACTCACTAGTAGAAAAAGGGT 57.589 37.037 3.59 0.00 41.46 4.34
3498 3722 9.406113 TCTATACTCACTAGTAGAAAAAGGGTC 57.594 37.037 3.59 0.00 41.46 4.46
3499 3723 9.186837 CTATACTCACTAGTAGAAAAAGGGTCA 57.813 37.037 3.59 0.00 41.46 4.02
3500 3724 6.936968 ACTCACTAGTAGAAAAAGGGTCAT 57.063 37.500 3.59 0.00 32.84 3.06
3501 3725 6.937392 ACTCACTAGTAGAAAAAGGGTCATC 58.063 40.000 3.59 0.00 32.84 2.92
3502 3726 6.726764 ACTCACTAGTAGAAAAAGGGTCATCT 59.273 38.462 3.59 0.00 32.84 2.90
3503 3727 6.936279 TCACTAGTAGAAAAAGGGTCATCTG 58.064 40.000 3.59 0.00 0.00 2.90
3504 3728 6.497259 TCACTAGTAGAAAAAGGGTCATCTGT 59.503 38.462 3.59 0.00 0.00 3.41
3505 3729 7.016268 TCACTAGTAGAAAAAGGGTCATCTGTT 59.984 37.037 3.59 0.00 0.00 3.16
3506 3730 7.661847 CACTAGTAGAAAAAGGGTCATCTGTTT 59.338 37.037 3.59 0.00 0.00 2.83
3507 3731 7.878644 ACTAGTAGAAAAAGGGTCATCTGTTTC 59.121 37.037 3.59 0.00 39.87 2.78
3508 3732 5.701290 AGTAGAAAAAGGGTCATCTGTTTCG 59.299 40.000 0.00 0.00 42.72 3.46
3509 3733 3.821033 AGAAAAAGGGTCATCTGTTTCGG 59.179 43.478 0.00 0.00 42.72 4.30
3510 3734 2.951229 AAAGGGTCATCTGTTTCGGT 57.049 45.000 0.00 0.00 0.00 4.69
3511 3735 2.951229 AAGGGTCATCTGTTTCGGTT 57.049 45.000 0.00 0.00 0.00 4.44
3512 3736 2.185004 AGGGTCATCTGTTTCGGTTG 57.815 50.000 0.00 0.00 0.00 3.77
3513 3737 1.165270 GGGTCATCTGTTTCGGTTGG 58.835 55.000 0.00 0.00 0.00 3.77
3514 3738 1.544759 GGGTCATCTGTTTCGGTTGGT 60.545 52.381 0.00 0.00 0.00 3.67
3515 3739 2.289819 GGGTCATCTGTTTCGGTTGGTA 60.290 50.000 0.00 0.00 0.00 3.25
3516 3740 3.404899 GGTCATCTGTTTCGGTTGGTAA 58.595 45.455 0.00 0.00 0.00 2.85
3517 3741 3.435671 GGTCATCTGTTTCGGTTGGTAAG 59.564 47.826 0.00 0.00 0.00 2.34
3518 3742 3.435671 GTCATCTGTTTCGGTTGGTAAGG 59.564 47.826 0.00 0.00 0.00 2.69
3519 3743 2.554370 TCTGTTTCGGTTGGTAAGGG 57.446 50.000 0.00 0.00 0.00 3.95
3520 3744 0.879090 CTGTTTCGGTTGGTAAGGGC 59.121 55.000 0.00 0.00 0.00 5.19
3521 3745 0.537828 TGTTTCGGTTGGTAAGGGCC 60.538 55.000 0.00 0.00 0.00 5.80
3522 3746 0.251033 GTTTCGGTTGGTAAGGGCCT 60.251 55.000 0.00 0.00 0.00 5.19
3523 3747 0.479378 TTTCGGTTGGTAAGGGCCTT 59.521 50.000 24.44 24.44 0.00 4.35
3524 3748 0.479378 TTCGGTTGGTAAGGGCCTTT 59.521 50.000 26.29 5.08 0.00 3.11
3525 3749 0.479378 TCGGTTGGTAAGGGCCTTTT 59.521 50.000 26.29 2.86 0.00 2.27
3526 3750 0.601057 CGGTTGGTAAGGGCCTTTTG 59.399 55.000 26.29 3.03 0.00 2.44
3527 3751 1.712056 GGTTGGTAAGGGCCTTTTGT 58.288 50.000 26.29 1.50 0.00 2.83
3528 3752 1.616865 GGTTGGTAAGGGCCTTTTGTC 59.383 52.381 26.29 12.32 0.00 3.18
3529 3753 1.616865 GTTGGTAAGGGCCTTTTGTCC 59.383 52.381 26.29 20.31 0.00 4.02
3530 3754 0.113580 TGGTAAGGGCCTTTTGTCCC 59.886 55.000 26.29 16.23 42.94 4.46
3531 3755 0.113580 GGTAAGGGCCTTTTGTCCCA 59.886 55.000 26.29 0.34 45.07 4.37
3532 3756 1.545841 GTAAGGGCCTTTTGTCCCAG 58.454 55.000 26.29 0.00 45.07 4.45
3533 3757 1.154430 TAAGGGCCTTTTGTCCCAGT 58.846 50.000 26.29 0.00 45.07 4.00
3534 3758 0.264657 AAGGGCCTTTTGTCCCAGTT 59.735 50.000 14.48 0.00 45.07 3.16
3535 3759 0.469892 AGGGCCTTTTGTCCCAGTTG 60.470 55.000 0.00 0.00 45.07 3.16
3536 3760 0.759060 GGGCCTTTTGTCCCAGTTGT 60.759 55.000 0.84 0.00 42.18 3.32
3537 3761 1.119684 GGCCTTTTGTCCCAGTTGTT 58.880 50.000 0.00 0.00 0.00 2.83
3538 3762 1.202521 GGCCTTTTGTCCCAGTTGTTG 60.203 52.381 0.00 0.00 0.00 3.33
3539 3763 1.754226 GCCTTTTGTCCCAGTTGTTGA 59.246 47.619 0.00 0.00 0.00 3.18
3540 3764 2.167487 GCCTTTTGTCCCAGTTGTTGAA 59.833 45.455 0.00 0.00 0.00 2.69
3541 3765 3.780902 CCTTTTGTCCCAGTTGTTGAAC 58.219 45.455 0.00 0.00 0.00 3.18
3542 3766 3.430236 CCTTTTGTCCCAGTTGTTGAACC 60.430 47.826 0.00 0.00 31.81 3.62
3543 3767 1.384525 TTGTCCCAGTTGTTGAACCG 58.615 50.000 0.00 0.00 31.81 4.44
3544 3768 0.464735 TGTCCCAGTTGTTGAACCGG 60.465 55.000 0.00 0.00 31.81 5.28
3545 3769 3.758172 CCCAGTTGTTGAACCGGG 58.242 61.111 6.32 0.00 42.34 5.73
3546 3770 4.889807 CCAGTTGTTGAACCGGGA 57.110 55.556 6.32 0.00 31.53 5.14
3547 3771 2.327228 CCAGTTGTTGAACCGGGAC 58.673 57.895 6.32 0.00 31.53 4.46
3548 3772 0.179029 CCAGTTGTTGAACCGGGACT 60.179 55.000 6.32 0.00 31.53 3.85
3549 3773 1.071071 CCAGTTGTTGAACCGGGACTA 59.929 52.381 6.32 0.00 31.53 2.59
3550 3774 2.485835 CCAGTTGTTGAACCGGGACTAA 60.486 50.000 6.32 0.00 31.53 2.24
3551 3775 3.207778 CAGTTGTTGAACCGGGACTAAA 58.792 45.455 6.32 0.00 31.81 1.85
3552 3776 3.628487 CAGTTGTTGAACCGGGACTAAAA 59.372 43.478 6.32 0.00 31.81 1.52
3553 3777 3.881089 AGTTGTTGAACCGGGACTAAAAG 59.119 43.478 6.32 0.00 31.81 2.27
3554 3778 2.853705 TGTTGAACCGGGACTAAAAGG 58.146 47.619 6.32 0.00 0.00 3.11
3555 3779 2.173143 TGTTGAACCGGGACTAAAAGGT 59.827 45.455 6.32 0.00 38.88 3.50
3556 3780 2.810274 GTTGAACCGGGACTAAAAGGTC 59.190 50.000 6.32 0.00 35.68 3.85
3557 3781 1.001181 TGAACCGGGACTAAAAGGTCG 59.999 52.381 6.32 0.00 35.68 4.79
3558 3782 1.001293 GAACCGGGACTAAAAGGTCGT 59.999 52.381 6.32 0.00 35.68 4.34
3559 3783 1.051008 ACCGGGACTAAAAGGTCGTT 58.949 50.000 6.32 0.00 37.12 3.85
3560 3784 2.247358 ACCGGGACTAAAAGGTCGTTA 58.753 47.619 6.32 0.00 37.12 3.18
3561 3785 2.029020 ACCGGGACTAAAAGGTCGTTAC 60.029 50.000 6.32 0.00 37.12 2.50
3562 3786 2.232208 CCGGGACTAAAAGGTCGTTACT 59.768 50.000 0.00 0.00 37.12 2.24
3563 3787 3.443681 CCGGGACTAAAAGGTCGTTACTA 59.556 47.826 0.00 0.00 37.12 1.82
3564 3788 4.082245 CCGGGACTAAAAGGTCGTTACTAA 60.082 45.833 0.00 0.00 37.12 2.24
3565 3789 5.394553 CCGGGACTAAAAGGTCGTTACTAAT 60.395 44.000 0.00 0.00 37.12 1.73
3566 3790 5.517770 CGGGACTAAAAGGTCGTTACTAATG 59.482 44.000 0.00 0.00 37.12 1.90
3567 3791 5.292834 GGGACTAAAAGGTCGTTACTAATGC 59.707 44.000 0.00 0.00 37.12 3.56
3568 3792 5.292834 GGACTAAAAGGTCGTTACTAATGCC 59.707 44.000 0.00 0.00 37.12 4.40
3569 3793 5.181009 ACTAAAAGGTCGTTACTAATGCCC 58.819 41.667 0.00 0.00 0.00 5.36
3570 3794 3.994931 AAAGGTCGTTACTAATGCCCT 57.005 42.857 0.00 0.00 0.00 5.19
3571 3795 5.425196 AAAAGGTCGTTACTAATGCCCTA 57.575 39.130 0.00 0.00 0.00 3.53
3572 3796 4.667519 AAGGTCGTTACTAATGCCCTAG 57.332 45.455 0.00 0.00 0.00 3.02
3573 3797 2.364647 AGGTCGTTACTAATGCCCTAGC 59.635 50.000 0.00 0.00 40.48 3.42
3574 3798 2.547430 GGTCGTTACTAATGCCCTAGCC 60.547 54.545 0.00 0.00 38.69 3.93
3575 3799 2.101917 GTCGTTACTAATGCCCTAGCCA 59.898 50.000 0.00 0.00 38.69 4.75
3576 3800 2.101917 TCGTTACTAATGCCCTAGCCAC 59.898 50.000 0.00 0.00 38.69 5.01
3577 3801 2.102588 CGTTACTAATGCCCTAGCCACT 59.897 50.000 0.00 0.00 38.69 4.00
3578 3802 3.319972 CGTTACTAATGCCCTAGCCACTA 59.680 47.826 0.00 0.00 38.69 2.74
3579 3803 4.629092 GTTACTAATGCCCTAGCCACTAC 58.371 47.826 0.00 0.00 38.69 2.73
3580 3804 3.047695 ACTAATGCCCTAGCCACTACT 57.952 47.619 0.00 0.00 38.69 2.57
3581 3805 4.194678 ACTAATGCCCTAGCCACTACTA 57.805 45.455 0.00 0.00 38.69 1.82
3582 3806 4.553678 ACTAATGCCCTAGCCACTACTAA 58.446 43.478 0.00 0.00 38.69 2.24
3583 3807 4.966805 ACTAATGCCCTAGCCACTACTAAA 59.033 41.667 0.00 0.00 38.69 1.85
3584 3808 4.855298 AATGCCCTAGCCACTACTAAAA 57.145 40.909 0.00 0.00 38.69 1.52
3585 3809 4.855298 ATGCCCTAGCCACTACTAAAAA 57.145 40.909 0.00 0.00 38.69 1.94
3603 3827 1.450025 AAAAGGCTTACTAGTGGCGC 58.550 50.000 5.39 0.00 0.00 6.53
3604 3828 0.323629 AAAGGCTTACTAGTGGCGCA 59.676 50.000 10.83 0.00 0.00 6.09
3605 3829 0.391263 AAGGCTTACTAGTGGCGCAC 60.391 55.000 10.83 5.73 34.10 5.34
3606 3830 1.814169 GGCTTACTAGTGGCGCACC 60.814 63.158 10.83 0.00 34.49 5.01
3607 3831 1.079405 GCTTACTAGTGGCGCACCA 60.079 57.895 10.83 0.00 46.51 4.17
3615 3839 3.910490 TGGCGCACCAGTTTTGCC 61.910 61.111 10.83 0.00 42.67 4.52
3616 3840 3.605664 GGCGCACCAGTTTTGCCT 61.606 61.111 10.83 0.00 42.44 4.75
3617 3841 2.265182 GGCGCACCAGTTTTGCCTA 61.265 57.895 10.83 0.00 42.44 3.93
3618 3842 1.081442 GCGCACCAGTTTTGCCTAC 60.081 57.895 0.30 0.00 36.57 3.18
3619 3843 1.515521 GCGCACCAGTTTTGCCTACT 61.516 55.000 0.30 0.00 36.57 2.57
3620 3844 1.803334 CGCACCAGTTTTGCCTACTA 58.197 50.000 0.00 0.00 36.57 1.82
3621 3845 2.147958 CGCACCAGTTTTGCCTACTAA 58.852 47.619 0.00 0.00 36.57 2.24
3622 3846 2.747446 CGCACCAGTTTTGCCTACTAAT 59.253 45.455 0.00 0.00 36.57 1.73
3623 3847 3.426159 CGCACCAGTTTTGCCTACTAATG 60.426 47.826 0.00 0.00 36.57 1.90
3624 3848 3.119495 GCACCAGTTTTGCCTACTAATGG 60.119 47.826 0.00 0.00 33.58 3.16
3630 3854 4.857251 GCCTACTAATGGCGCACT 57.143 55.556 10.83 0.00 41.03 4.40
3631 3855 3.980583 GCCTACTAATGGCGCACTA 57.019 52.632 10.83 0.00 41.03 2.74
3632 3856 1.499049 GCCTACTAATGGCGCACTAC 58.501 55.000 10.83 0.00 41.03 2.73
3633 3857 1.068741 GCCTACTAATGGCGCACTACT 59.931 52.381 10.83 0.00 41.03 2.57
3634 3858 2.743938 CCTACTAATGGCGCACTACTG 58.256 52.381 10.83 0.00 0.00 2.74
3635 3859 2.361119 CCTACTAATGGCGCACTACTGA 59.639 50.000 10.83 0.00 0.00 3.41
3636 3860 3.005897 CCTACTAATGGCGCACTACTGAT 59.994 47.826 10.83 0.00 0.00 2.90
3637 3861 2.826428 ACTAATGGCGCACTACTGATG 58.174 47.619 10.83 0.00 0.00 3.07
3638 3862 1.528586 CTAATGGCGCACTACTGATGC 59.471 52.381 10.83 0.00 39.81 3.91
3643 3867 3.093278 GCACTACTGATGCGCCAC 58.907 61.111 4.18 0.00 32.45 5.01
3644 3868 1.448540 GCACTACTGATGCGCCACT 60.449 57.895 4.18 0.00 32.45 4.00
3645 3869 0.179111 GCACTACTGATGCGCCACTA 60.179 55.000 4.18 0.00 32.45 2.74
3646 3870 1.845266 CACTACTGATGCGCCACTAG 58.155 55.000 4.18 0.14 0.00 2.57
3647 3871 0.103208 ACTACTGATGCGCCACTAGC 59.897 55.000 4.18 0.00 38.52 3.42
3656 3880 4.697756 GCCACTAGCACCACGCCA 62.698 66.667 0.00 0.00 44.04 5.69
3657 3881 2.742372 CCACTAGCACCACGCCAC 60.742 66.667 0.00 0.00 44.04 5.01
3658 3882 2.343758 CACTAGCACCACGCCACT 59.656 61.111 0.00 0.00 44.04 4.00
3659 3883 1.589630 CACTAGCACCACGCCACTA 59.410 57.895 0.00 0.00 44.04 2.74
3660 3884 0.458543 CACTAGCACCACGCCACTAG 60.459 60.000 0.00 0.00 44.04 2.57
3661 3885 0.611062 ACTAGCACCACGCCACTAGA 60.611 55.000 0.00 0.00 44.04 2.43
3662 3886 0.530744 CTAGCACCACGCCACTAGAA 59.469 55.000 0.00 0.00 44.04 2.10
3663 3887 1.137086 CTAGCACCACGCCACTAGAAT 59.863 52.381 0.00 0.00 44.04 2.40
3664 3888 1.191535 AGCACCACGCCACTAGAATA 58.808 50.000 0.00 0.00 44.04 1.75
3665 3889 1.762957 AGCACCACGCCACTAGAATAT 59.237 47.619 0.00 0.00 44.04 1.28
3666 3890 2.170607 AGCACCACGCCACTAGAATATT 59.829 45.455 0.00 0.00 44.04 1.28
3667 3891 2.943033 GCACCACGCCACTAGAATATTT 59.057 45.455 0.00 0.00 32.94 1.40
3668 3892 3.377172 GCACCACGCCACTAGAATATTTT 59.623 43.478 0.00 0.00 32.94 1.82
3669 3893 4.573201 GCACCACGCCACTAGAATATTTTA 59.427 41.667 0.00 0.00 32.94 1.52
3670 3894 5.277345 GCACCACGCCACTAGAATATTTTAG 60.277 44.000 10.66 10.66 32.94 1.85
3671 3895 5.815740 CACCACGCCACTAGAATATTTTAGT 59.184 40.000 11.84 11.84 0.00 2.24
3672 3896 6.982141 CACCACGCCACTAGAATATTTTAGTA 59.018 38.462 16.06 0.00 0.00 1.82
3673 3897 7.493320 CACCACGCCACTAGAATATTTTAGTAA 59.507 37.037 16.06 0.00 0.00 2.24
3674 3898 8.208903 ACCACGCCACTAGAATATTTTAGTAAT 58.791 33.333 16.06 2.83 0.00 1.89
3675 3899 8.495949 CCACGCCACTAGAATATTTTAGTAATG 58.504 37.037 16.06 11.55 0.00 1.90
3676 3900 8.495949 CACGCCACTAGAATATTTTAGTAATGG 58.504 37.037 16.06 14.38 0.00 3.16
3677 3901 8.208903 ACGCCACTAGAATATTTTAGTAATGGT 58.791 33.333 16.06 10.27 0.00 3.55
3678 3902 9.701098 CGCCACTAGAATATTTTAGTAATGGTA 57.299 33.333 16.06 0.00 0.00 3.25
3687 3911 9.807921 AATATTTTAGTAATGGTATCCCACAGG 57.192 33.333 0.00 0.00 45.65 4.00
3688 3912 6.645884 TTTTAGTAATGGTATCCCACAGGT 57.354 37.500 0.00 0.00 45.65 4.00
3689 3913 5.623956 TTAGTAATGGTATCCCACAGGTG 57.376 43.478 0.00 0.00 45.65 4.00
3690 3914 2.172717 AGTAATGGTATCCCACAGGTGC 59.827 50.000 0.00 0.00 45.65 5.01
3691 3915 0.107214 AATGGTATCCCACAGGTGCG 60.107 55.000 0.00 0.00 45.65 5.34
3692 3916 2.513897 GGTATCCCACAGGTGCGC 60.514 66.667 0.00 0.00 0.00 6.09
3693 3917 2.513897 GTATCCCACAGGTGCGCC 60.514 66.667 8.71 8.71 0.00 6.53
3694 3918 3.006133 TATCCCACAGGTGCGCCA 61.006 61.111 20.59 0.00 37.19 5.69
3695 3919 2.374525 TATCCCACAGGTGCGCCAT 61.375 57.895 20.59 2.62 37.19 4.40
3696 3920 1.920734 TATCCCACAGGTGCGCCATT 61.921 55.000 20.59 0.58 37.19 3.16
3697 3921 1.920734 ATCCCACAGGTGCGCCATTA 61.921 55.000 20.59 0.00 37.19 1.90
3698 3922 2.114670 CCCACAGGTGCGCCATTAG 61.115 63.158 20.59 7.78 37.19 1.73
3699 3923 1.377202 CCACAGGTGCGCCATTAGT 60.377 57.895 20.59 8.46 37.19 2.24
3700 3924 0.107897 CCACAGGTGCGCCATTAGTA 60.108 55.000 20.59 0.00 37.19 1.82
3701 3925 1.475034 CCACAGGTGCGCCATTAGTAT 60.475 52.381 20.59 0.00 37.19 2.12
3702 3926 1.867233 CACAGGTGCGCCATTAGTATC 59.133 52.381 20.59 0.00 37.19 2.24
3703 3927 1.202651 ACAGGTGCGCCATTAGTATCC 60.203 52.381 20.59 0.00 37.19 2.59
3704 3928 0.396811 AGGTGCGCCATTAGTATCCC 59.603 55.000 20.59 0.00 37.19 3.85
3705 3929 0.107831 GGTGCGCCATTAGTATCCCA 59.892 55.000 12.58 0.00 34.09 4.37
3706 3930 1.226746 GTGCGCCATTAGTATCCCAC 58.773 55.000 4.18 0.00 0.00 4.61
3707 3931 0.833949 TGCGCCATTAGTATCCCACA 59.166 50.000 4.18 0.00 0.00 4.17
3708 3932 1.202639 TGCGCCATTAGTATCCCACAG 60.203 52.381 4.18 0.00 0.00 3.66
3709 3933 1.878102 GCGCCATTAGTATCCCACAGG 60.878 57.143 0.00 0.00 0.00 4.00
3710 3934 1.416401 CGCCATTAGTATCCCACAGGT 59.584 52.381 0.00 0.00 0.00 4.00
3711 3935 2.806745 CGCCATTAGTATCCCACAGGTG 60.807 54.545 0.00 0.00 0.00 4.00
3712 3936 2.851195 CCATTAGTATCCCACAGGTGC 58.149 52.381 0.00 0.00 0.00 5.01
3713 3937 2.487265 CCATTAGTATCCCACAGGTGCC 60.487 54.545 0.00 0.00 0.00 5.01
3714 3938 1.209621 TTAGTATCCCACAGGTGCCC 58.790 55.000 0.00 0.00 0.00 5.36
3715 3939 0.693092 TAGTATCCCACAGGTGCCCC 60.693 60.000 0.00 0.00 0.00 5.80
3716 3940 2.126142 TATCCCACAGGTGCCCCA 59.874 61.111 0.00 0.00 0.00 4.96
3717 3941 1.308657 TATCCCACAGGTGCCCCAT 60.309 57.895 0.00 0.00 0.00 4.00
3718 3942 0.923729 TATCCCACAGGTGCCCCATT 60.924 55.000 0.00 0.00 0.00 3.16
3719 3943 0.923729 ATCCCACAGGTGCCCCATTA 60.924 55.000 0.00 0.00 0.00 1.90
3720 3944 1.076777 CCCACAGGTGCCCCATTAG 60.077 63.158 0.00 0.00 0.00 1.73
3721 3945 1.691219 CCACAGGTGCCCCATTAGT 59.309 57.895 0.00 0.00 0.00 2.24
3722 3946 0.916086 CCACAGGTGCCCCATTAGTA 59.084 55.000 0.00 0.00 0.00 1.82
3723 3947 1.283613 CCACAGGTGCCCCATTAGTAA 59.716 52.381 0.00 0.00 0.00 2.24
3724 3948 2.365582 CACAGGTGCCCCATTAGTAAC 58.634 52.381 0.00 0.00 0.00 2.50
3725 3949 2.026262 CACAGGTGCCCCATTAGTAACT 60.026 50.000 0.00 0.00 0.00 2.24
3726 3950 2.026262 ACAGGTGCCCCATTAGTAACTG 60.026 50.000 0.00 0.00 40.15 3.16
3727 3951 1.564348 AGGTGCCCCATTAGTAACTGG 59.436 52.381 0.00 5.03 0.00 4.00
3728 3952 1.283905 GGTGCCCCATTAGTAACTGGT 59.716 52.381 9.24 0.00 0.00 4.00
3729 3953 2.506644 GGTGCCCCATTAGTAACTGGTA 59.493 50.000 9.24 0.00 0.00 3.25
3730 3954 3.137728 GGTGCCCCATTAGTAACTGGTAT 59.862 47.826 9.24 0.00 0.00 2.73
3731 3955 4.348754 GGTGCCCCATTAGTAACTGGTATA 59.651 45.833 9.24 0.00 0.00 1.47
3732 3956 5.303165 GTGCCCCATTAGTAACTGGTATAC 58.697 45.833 0.00 0.00 0.00 1.47
3733 3957 5.071384 GTGCCCCATTAGTAACTGGTATACT 59.929 44.000 2.25 0.00 37.39 2.12
3734 3958 6.268387 GTGCCCCATTAGTAACTGGTATACTA 59.732 42.308 2.25 0.00 35.34 1.82
3735 3959 6.845446 TGCCCCATTAGTAACTGGTATACTAA 59.155 38.462 2.25 8.19 45.13 2.24
3741 3965 4.879598 AGTAACTGGTATACTAATGGCGC 58.120 43.478 0.00 0.00 31.96 6.53
3742 3966 3.830744 AACTGGTATACTAATGGCGCA 57.169 42.857 10.83 0.00 0.00 6.09
3743 3967 4.351874 AACTGGTATACTAATGGCGCAT 57.648 40.909 10.83 0.00 0.00 4.73
3744 3968 3.926616 ACTGGTATACTAATGGCGCATC 58.073 45.455 10.83 0.00 0.00 3.91
3745 3969 3.323691 ACTGGTATACTAATGGCGCATCA 59.676 43.478 10.83 0.00 0.00 3.07
3746 3970 3.925379 TGGTATACTAATGGCGCATCAG 58.075 45.455 10.83 2.55 0.00 2.90
3747 3971 3.576550 TGGTATACTAATGGCGCATCAGA 59.423 43.478 10.83 0.00 0.00 3.27
3748 3972 4.222810 TGGTATACTAATGGCGCATCAGAT 59.777 41.667 10.83 0.00 0.00 2.90
3749 3973 4.568359 GGTATACTAATGGCGCATCAGATG 59.432 45.833 10.83 5.98 0.00 2.90
3750 3974 1.888215 ACTAATGGCGCATCAGATGG 58.112 50.000 10.83 3.79 0.00 3.51
3751 3975 1.417517 ACTAATGGCGCATCAGATGGA 59.582 47.619 10.83 0.00 0.00 3.41
3752 3976 2.158769 ACTAATGGCGCATCAGATGGAA 60.159 45.455 10.83 0.00 0.00 3.53
3753 3977 1.315690 AATGGCGCATCAGATGGAAG 58.684 50.000 10.83 0.00 0.00 3.46
3754 3978 0.182061 ATGGCGCATCAGATGGAAGT 59.818 50.000 10.83 0.00 0.00 3.01
3755 3979 0.745486 TGGCGCATCAGATGGAAGTG 60.745 55.000 10.83 0.00 0.00 3.16
3756 3980 1.354506 GCGCATCAGATGGAAGTGC 59.645 57.895 12.54 0.52 42.57 4.40
3758 3982 1.354506 GCATCAGATGGAAGTGCGC 59.645 57.895 12.54 0.00 0.00 6.09
3759 3983 2.020131 CATCAGATGGAAGTGCGCC 58.980 57.895 4.18 0.00 0.00 6.53
3760 3984 0.745486 CATCAGATGGAAGTGCGCCA 60.745 55.000 4.18 0.00 40.24 5.69
3762 3986 0.035152 TCAGATGGAAGTGCGCCATT 60.035 50.000 4.18 0.00 45.81 3.16
3763 3987 1.209261 TCAGATGGAAGTGCGCCATTA 59.791 47.619 4.18 0.00 45.81 1.90
3764 3988 1.600957 CAGATGGAAGTGCGCCATTAG 59.399 52.381 4.18 0.00 45.81 1.73
3765 3989 1.210478 AGATGGAAGTGCGCCATTAGT 59.790 47.619 4.18 0.00 45.81 2.24
3766 3990 2.434336 AGATGGAAGTGCGCCATTAGTA 59.566 45.455 4.18 0.00 45.81 1.82
3767 3991 2.772077 TGGAAGTGCGCCATTAGTAA 57.228 45.000 4.18 0.00 0.00 2.24
3768 3992 2.352388 TGGAAGTGCGCCATTAGTAAC 58.648 47.619 4.18 0.00 0.00 2.50
3769 3993 2.289756 TGGAAGTGCGCCATTAGTAACA 60.290 45.455 4.18 0.00 0.00 2.41
3770 3994 2.943033 GGAAGTGCGCCATTAGTAACAT 59.057 45.455 4.18 0.00 0.00 2.71
3771 3995 3.377172 GGAAGTGCGCCATTAGTAACATT 59.623 43.478 4.18 0.00 0.00 2.71
3772 3996 4.142469 GGAAGTGCGCCATTAGTAACATTT 60.142 41.667 4.18 0.00 0.00 2.32
3773 3997 5.385509 AAGTGCGCCATTAGTAACATTTT 57.614 34.783 4.18 0.00 0.00 1.82
3774 3998 6.403855 GGAAGTGCGCCATTAGTAACATTTTA 60.404 38.462 4.18 0.00 0.00 1.52
3775 3999 6.503589 AGTGCGCCATTAGTAACATTTTAA 57.496 33.333 4.18 0.00 0.00 1.52
3776 4000 6.915349 AGTGCGCCATTAGTAACATTTTAAA 58.085 32.000 4.18 0.00 0.00 1.52
3777 4001 7.371936 AGTGCGCCATTAGTAACATTTTAAAA 58.628 30.769 4.18 2.51 0.00 1.52
3778 4002 7.868415 AGTGCGCCATTAGTAACATTTTAAAAA 59.132 29.630 4.18 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.409312 TGTGCTCATTATGTTTGTATTCTTTTG 57.591 29.630 0.00 0.00 0.00 2.44
2 3 9.577110 CATGTGCTCATTATGTTTGTATTCTTT 57.423 29.630 0.00 0.00 31.15 2.52
3 4 7.703621 GCATGTGCTCATTATGTTTGTATTCTT 59.296 33.333 0.00 0.00 38.21 2.52
4 5 7.198390 GCATGTGCTCATTATGTTTGTATTCT 58.802 34.615 0.00 0.00 38.21 2.40
5 6 6.418819 GGCATGTGCTCATTATGTTTGTATTC 59.581 38.462 4.84 0.00 41.70 1.75
6 7 6.097270 AGGCATGTGCTCATTATGTTTGTATT 59.903 34.615 4.84 0.00 41.70 1.89
7 8 5.595542 AGGCATGTGCTCATTATGTTTGTAT 59.404 36.000 4.84 0.00 41.70 2.29
8 9 4.949238 AGGCATGTGCTCATTATGTTTGTA 59.051 37.500 4.84 0.00 41.70 2.41
9 10 3.765511 AGGCATGTGCTCATTATGTTTGT 59.234 39.130 4.84 0.00 41.70 2.83
10 11 4.097437 AGAGGCATGTGCTCATTATGTTTG 59.903 41.667 4.84 0.00 41.70 2.93
11 12 4.097437 CAGAGGCATGTGCTCATTATGTTT 59.903 41.667 4.84 0.00 41.70 2.83
12 13 3.630769 CAGAGGCATGTGCTCATTATGTT 59.369 43.478 4.84 0.00 41.70 2.71
13 14 3.211865 CAGAGGCATGTGCTCATTATGT 58.788 45.455 4.84 0.00 41.70 2.29
14 15 2.031069 GCAGAGGCATGTGCTCATTATG 60.031 50.000 13.81 0.00 42.30 1.90
15 16 2.228059 GCAGAGGCATGTGCTCATTAT 58.772 47.619 13.81 0.00 42.30 1.28
16 17 1.671979 GCAGAGGCATGTGCTCATTA 58.328 50.000 13.81 0.00 42.30 1.90
17 18 2.490165 GCAGAGGCATGTGCTCATT 58.510 52.632 13.81 0.00 42.30 2.57
18 19 4.237445 GCAGAGGCATGTGCTCAT 57.763 55.556 13.81 0.00 42.30 2.90
52 53 8.947055 ATTTTGCTATTTGACAGAGTGTTTTT 57.053 26.923 0.00 0.00 0.00 1.94
53 54 8.947055 AATTTTGCTATTTGACAGAGTGTTTT 57.053 26.923 0.00 0.00 0.00 2.43
68 69 9.726438 AGCTTCGGTCTTATATAATTTTGCTAT 57.274 29.630 0.00 0.00 0.00 2.97
70 71 9.726438 ATAGCTTCGGTCTTATATAATTTTGCT 57.274 29.630 0.00 0.00 0.00 3.91
71 72 9.760660 CATAGCTTCGGTCTTATATAATTTTGC 57.239 33.333 0.00 0.00 0.00 3.68
78 79 8.675504 GCTTAGACATAGCTTCGGTCTTATATA 58.324 37.037 16.53 0.47 41.74 0.86
79 80 7.540299 GCTTAGACATAGCTTCGGTCTTATAT 58.460 38.462 16.53 0.04 41.74 0.86
80 81 6.348295 CGCTTAGACATAGCTTCGGTCTTATA 60.348 42.308 16.53 1.05 41.74 0.98
81 82 5.563085 CGCTTAGACATAGCTTCGGTCTTAT 60.563 44.000 16.53 0.62 41.74 1.73
82 83 4.261072 CGCTTAGACATAGCTTCGGTCTTA 60.261 45.833 16.53 9.29 41.74 2.10
83 84 3.489398 CGCTTAGACATAGCTTCGGTCTT 60.489 47.826 16.53 5.22 41.74 3.01
84 85 2.033550 CGCTTAGACATAGCTTCGGTCT 59.966 50.000 15.86 15.86 43.76 3.85
85 86 2.223525 ACGCTTAGACATAGCTTCGGTC 60.224 50.000 0.00 0.00 36.49 4.79
86 87 1.749634 ACGCTTAGACATAGCTTCGGT 59.250 47.619 0.00 0.00 36.49 4.69
87 88 2.120232 CACGCTTAGACATAGCTTCGG 58.880 52.381 0.00 0.00 36.49 4.30
88 89 2.120232 CCACGCTTAGACATAGCTTCG 58.880 52.381 0.00 0.00 36.49 3.79
89 90 3.438297 TCCACGCTTAGACATAGCTTC 57.562 47.619 0.00 0.00 36.49 3.86
90 91 3.887621 TTCCACGCTTAGACATAGCTT 57.112 42.857 0.00 0.00 36.49 3.74
91 92 3.887621 TTTCCACGCTTAGACATAGCT 57.112 42.857 0.00 0.00 36.49 3.32
92 93 4.939509 TTTTTCCACGCTTAGACATAGC 57.060 40.909 0.00 0.00 35.29 2.97
111 112 7.084486 GTGAGATTTAGTCGCTTTGGATTTTT 58.916 34.615 0.00 0.00 0.00 1.94
112 113 6.349363 GGTGAGATTTAGTCGCTTTGGATTTT 60.349 38.462 0.00 0.00 0.00 1.82
113 114 5.123979 GGTGAGATTTAGTCGCTTTGGATTT 59.876 40.000 0.00 0.00 0.00 2.17
114 115 4.636206 GGTGAGATTTAGTCGCTTTGGATT 59.364 41.667 0.00 0.00 0.00 3.01
115 116 4.192317 GGTGAGATTTAGTCGCTTTGGAT 58.808 43.478 0.00 0.00 0.00 3.41
116 117 3.007506 TGGTGAGATTTAGTCGCTTTGGA 59.992 43.478 0.00 0.00 0.00 3.53
117 118 3.334691 TGGTGAGATTTAGTCGCTTTGG 58.665 45.455 0.00 0.00 0.00 3.28
118 119 4.872691 AGATGGTGAGATTTAGTCGCTTTG 59.127 41.667 0.00 0.00 0.00 2.77
119 120 5.091261 AGATGGTGAGATTTAGTCGCTTT 57.909 39.130 0.00 0.00 0.00 3.51
120 121 4.442192 GGAGATGGTGAGATTTAGTCGCTT 60.442 45.833 0.00 0.00 0.00 4.68
121 122 3.068873 GGAGATGGTGAGATTTAGTCGCT 59.931 47.826 0.00 0.00 0.00 4.93
122 123 3.385577 GGAGATGGTGAGATTTAGTCGC 58.614 50.000 0.00 0.00 0.00 5.19
123 124 3.243907 GGGGAGATGGTGAGATTTAGTCG 60.244 52.174 0.00 0.00 0.00 4.18
124 125 3.711704 TGGGGAGATGGTGAGATTTAGTC 59.288 47.826 0.00 0.00 0.00 2.59
125 126 3.456277 GTGGGGAGATGGTGAGATTTAGT 59.544 47.826 0.00 0.00 0.00 2.24
126 127 3.455910 TGTGGGGAGATGGTGAGATTTAG 59.544 47.826 0.00 0.00 0.00 1.85
127 128 3.455910 CTGTGGGGAGATGGTGAGATTTA 59.544 47.826 0.00 0.00 0.00 1.40
128 129 2.240667 CTGTGGGGAGATGGTGAGATTT 59.759 50.000 0.00 0.00 0.00 2.17
129 130 1.842562 CTGTGGGGAGATGGTGAGATT 59.157 52.381 0.00 0.00 0.00 2.40
130 131 1.274069 ACTGTGGGGAGATGGTGAGAT 60.274 52.381 0.00 0.00 0.00 2.75
131 132 0.117140 ACTGTGGGGAGATGGTGAGA 59.883 55.000 0.00 0.00 0.00 3.27
132 133 0.987294 AACTGTGGGGAGATGGTGAG 59.013 55.000 0.00 0.00 0.00 3.51
133 134 0.984230 GAACTGTGGGGAGATGGTGA 59.016 55.000 0.00 0.00 0.00 4.02
134 135 0.692476 TGAACTGTGGGGAGATGGTG 59.308 55.000 0.00 0.00 0.00 4.17
135 136 1.673767 ATGAACTGTGGGGAGATGGT 58.326 50.000 0.00 0.00 0.00 3.55
136 137 3.931907 TTATGAACTGTGGGGAGATGG 57.068 47.619 0.00 0.00 0.00 3.51
137 138 3.947834 GGTTTATGAACTGTGGGGAGATG 59.052 47.826 0.00 0.00 36.03 2.90
138 139 3.053619 GGGTTTATGAACTGTGGGGAGAT 60.054 47.826 0.00 0.00 36.03 2.75
139 140 2.307686 GGGTTTATGAACTGTGGGGAGA 59.692 50.000 0.00 0.00 36.03 3.71
140 141 2.620627 GGGGTTTATGAACTGTGGGGAG 60.621 54.545 0.00 0.00 36.03 4.30
141 142 1.356398 GGGGTTTATGAACTGTGGGGA 59.644 52.381 0.00 0.00 36.03 4.81
142 143 1.618616 GGGGGTTTATGAACTGTGGGG 60.619 57.143 0.00 0.00 36.03 4.96
143 144 1.076350 TGGGGGTTTATGAACTGTGGG 59.924 52.381 0.00 0.00 36.03 4.61
144 145 2.167662 GTGGGGGTTTATGAACTGTGG 58.832 52.381 0.00 0.00 36.03 4.17
145 146 2.870175 TGTGGGGGTTTATGAACTGTG 58.130 47.619 0.00 0.00 36.03 3.66
146 147 3.603965 TTGTGGGGGTTTATGAACTGT 57.396 42.857 0.00 0.00 36.03 3.55
147 148 5.013547 TGTATTGTGGGGGTTTATGAACTG 58.986 41.667 0.00 0.00 36.03 3.16
148 149 5.263872 TGTATTGTGGGGGTTTATGAACT 57.736 39.130 0.00 0.00 36.03 3.01
149 150 5.479027 ACTTGTATTGTGGGGGTTTATGAAC 59.521 40.000 0.00 0.00 34.96 3.18
150 151 5.646215 ACTTGTATTGTGGGGGTTTATGAA 58.354 37.500 0.00 0.00 0.00 2.57
151 152 5.263872 ACTTGTATTGTGGGGGTTTATGA 57.736 39.130 0.00 0.00 0.00 2.15
152 153 5.993748 AACTTGTATTGTGGGGGTTTATG 57.006 39.130 0.00 0.00 0.00 1.90
153 154 6.785466 AGAAAACTTGTATTGTGGGGGTTTAT 59.215 34.615 0.00 0.00 0.00 1.40
154 155 6.137559 AGAAAACTTGTATTGTGGGGGTTTA 58.862 36.000 0.00 0.00 0.00 2.01
155 156 4.966168 AGAAAACTTGTATTGTGGGGGTTT 59.034 37.500 0.00 0.00 0.00 3.27
156 157 4.552674 AGAAAACTTGTATTGTGGGGGTT 58.447 39.130 0.00 0.00 0.00 4.11
157 158 4.141018 AGAGAAAACTTGTATTGTGGGGGT 60.141 41.667 0.00 0.00 0.00 4.95
158 159 4.407365 AGAGAAAACTTGTATTGTGGGGG 58.593 43.478 0.00 0.00 0.00 5.40
159 160 4.459337 GGAGAGAAAACTTGTATTGTGGGG 59.541 45.833 0.00 0.00 0.00 4.96
160 161 5.316987 AGGAGAGAAAACTTGTATTGTGGG 58.683 41.667 0.00 0.00 0.00 4.61
161 162 6.294176 CCAAGGAGAGAAAACTTGTATTGTGG 60.294 42.308 0.00 0.00 39.85 4.17
162 163 6.672147 CCAAGGAGAGAAAACTTGTATTGTG 58.328 40.000 0.00 0.00 39.85 3.33
163 164 5.241728 GCCAAGGAGAGAAAACTTGTATTGT 59.758 40.000 0.00 0.00 39.85 2.71
164 165 5.241506 TGCCAAGGAGAGAAAACTTGTATTG 59.758 40.000 0.00 0.00 39.85 1.90
165 166 5.385198 TGCCAAGGAGAGAAAACTTGTATT 58.615 37.500 0.00 0.00 39.85 1.89
166 167 4.985538 TGCCAAGGAGAGAAAACTTGTAT 58.014 39.130 0.00 0.00 39.85 2.29
167 168 4.102524 TCTGCCAAGGAGAGAAAACTTGTA 59.897 41.667 0.00 0.00 39.85 2.41
168 169 3.117888 TCTGCCAAGGAGAGAAAACTTGT 60.118 43.478 0.00 0.00 39.85 3.16
169 170 3.480470 TCTGCCAAGGAGAGAAAACTTG 58.520 45.455 0.00 0.00 40.85 3.16
170 171 3.392616 TCTCTGCCAAGGAGAGAAAACTT 59.607 43.478 12.71 0.00 42.42 2.66
171 172 2.975489 TCTCTGCCAAGGAGAGAAAACT 59.025 45.455 12.71 0.00 42.42 2.66
172 173 3.409026 TCTCTGCCAAGGAGAGAAAAC 57.591 47.619 12.71 0.00 42.42 2.43
176 177 4.647564 AAAATTCTCTGCCAAGGAGAGA 57.352 40.909 11.28 11.28 43.43 3.10
177 178 4.763793 TCAAAAATTCTCTGCCAAGGAGAG 59.236 41.667 6.78 6.78 40.35 3.20
182 183 7.718272 TTTCATTCAAAAATTCTCTGCCAAG 57.282 32.000 0.00 0.00 0.00 3.61
253 258 3.834231 CCCATTGAAGAGGTTCCATGTTT 59.166 43.478 0.00 0.00 35.12 2.83
306 311 9.790297 ATCATGATAGTGGGAGTACCTATATTT 57.210 33.333 6.36 0.00 41.11 1.40
312 317 5.455326 GCAAATCATGATAGTGGGAGTACCT 60.455 44.000 9.04 0.00 41.11 3.08
332 341 2.148446 AATGCTATGAGCCCTGCAAA 57.852 45.000 0.00 0.00 41.51 3.68
338 347 8.667076 AATTTTTATTGAAATGCTATGAGCCC 57.333 30.769 0.00 0.00 41.51 5.19
422 432 5.221561 TGGAAACTTCTCTTGGACGTGAATA 60.222 40.000 0.00 0.00 0.00 1.75
438 448 7.823745 ACAGAAATTATGTCACTGGAAACTT 57.176 32.000 0.00 0.00 33.57 2.66
467 481 5.569059 CCGAGATCAAATGCAAGTACAAAAC 59.431 40.000 0.00 0.00 0.00 2.43
507 521 7.287950 TCGATGTATTCACTGAAACTTTTTCG 58.712 34.615 0.00 1.74 0.00 3.46
550 565 9.688592 GATGATAGAAACATCATTTTTCATCCC 57.311 33.333 0.00 0.00 43.97 3.85
627 646 4.831698 GCTAGGTGCTGAGCTGAG 57.168 61.111 5.83 0.00 38.95 3.35
653 672 2.991250 TCTTGGCTAATGTTGGCTCTC 58.009 47.619 1.17 0.00 34.79 3.20
661 680 5.826643 TGGGAAAGTATTCTTGGCTAATGT 58.173 37.500 0.00 0.00 35.79 2.71
688 707 0.445436 GGTGCAGCTGAGAATTCACG 59.555 55.000 20.43 0.00 0.00 4.35
745 764 4.047125 GGCTGGGCACTTGGGCTA 62.047 66.667 0.00 0.00 42.84 3.93
1010 1062 4.019321 CACAGGGTTTAAGGGAATCTGAGA 60.019 45.833 0.00 0.00 0.00 3.27
1014 1066 3.916989 AGACACAGGGTTTAAGGGAATCT 59.083 43.478 0.00 0.00 0.00 2.40
1031 1098 1.228657 GCTCAACGGTTGGGAGACAC 61.229 60.000 24.33 2.27 30.85 3.67
1032 1099 1.070786 GCTCAACGGTTGGGAGACA 59.929 57.895 24.33 1.29 30.85 3.41
1033 1100 2.027625 CGCTCAACGGTTGGGAGAC 61.028 63.158 24.33 5.89 38.44 3.36
1034 1101 2.342279 CGCTCAACGGTTGGGAGA 59.658 61.111 24.33 2.41 38.44 3.71
1035 1102 3.423154 GCGCTCAACGGTTGGGAG 61.423 66.667 24.33 21.34 43.93 4.30
1038 1105 3.254014 CTTGGCGCTCAACGGTTGG 62.254 63.158 19.91 11.98 43.93 3.77
1039 1106 2.252260 CTTGGCGCTCAACGGTTG 59.748 61.111 14.62 14.62 43.93 3.77
1040 1107 2.978010 CCTTGGCGCTCAACGGTT 60.978 61.111 7.64 0.00 43.93 4.44
1227 1294 2.433318 GTGGACCTGTCGCTCAGC 60.433 66.667 0.00 0.00 42.38 4.26
1482 1549 3.075005 ATGTGGTAGGACGGCGCT 61.075 61.111 6.90 0.00 0.00 5.92
1575 1642 1.823250 GCCACCATGGACAGGAACTTT 60.823 52.381 21.47 0.00 40.96 2.66
2075 2147 1.343069 AGACGCTGGGAAAAGTCTCT 58.657 50.000 0.00 0.00 39.49 3.10
2086 2158 0.033228 GATGGATGGAGAGACGCTGG 59.967 60.000 0.00 0.00 0.00 4.85
2214 2397 2.619177 CCTACAGACCTACACGATCCTG 59.381 54.545 0.00 0.00 0.00 3.86
2254 2437 4.454847 AGAGACGATCGAGTTTACAGTTCA 59.545 41.667 24.34 0.00 0.00 3.18
2514 2706 1.081906 CCTGCATGCGACACAACAC 60.082 57.895 14.09 0.00 0.00 3.32
2887 3081 3.247442 CGATCCTGCTGTACGTACAAAA 58.753 45.455 27.16 17.46 35.50 2.44
2978 3184 4.056050 CCCTAACTGGCATTACGTACATC 58.944 47.826 0.00 0.00 0.00 3.06
3136 3342 6.577103 AGATTAGTTTCAAGCATCTCGATCA 58.423 36.000 0.00 0.00 0.00 2.92
3205 3414 1.208293 CAGTCCCCTTCTCAAGTAGCC 59.792 57.143 0.00 0.00 0.00 3.93
3295 3505 0.747283 GGCAATGCTCTCACCAGAGG 60.747 60.000 4.82 0.00 45.89 3.69
3394 3618 2.042843 GGCGAGGAGAAGGAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
3396 3620 4.214327 GCGGCGAGGAGAAGGAGG 62.214 72.222 12.98 0.00 0.00 4.30
3430 3654 0.762418 ACAATCACGGTTCCCAGTCA 59.238 50.000 0.00 0.00 0.00 3.41
3431 3655 1.892209 AACAATCACGGTTCCCAGTC 58.108 50.000 0.00 0.00 0.00 3.51
3432 3656 2.370849 ACTAACAATCACGGTTCCCAGT 59.629 45.455 0.00 0.00 0.00 4.00
3433 3657 2.742053 CACTAACAATCACGGTTCCCAG 59.258 50.000 0.00 0.00 0.00 4.45
3434 3658 2.551287 CCACTAACAATCACGGTTCCCA 60.551 50.000 0.00 0.00 0.00 4.37
3435 3659 2.081462 CCACTAACAATCACGGTTCCC 58.919 52.381 0.00 0.00 0.00 3.97
3436 3660 1.467342 GCCACTAACAATCACGGTTCC 59.533 52.381 0.00 0.00 0.00 3.62
3437 3661 1.467342 GGCCACTAACAATCACGGTTC 59.533 52.381 0.00 0.00 0.00 3.62
3438 3662 1.073284 AGGCCACTAACAATCACGGTT 59.927 47.619 5.01 0.00 0.00 4.44
3439 3663 0.690762 AGGCCACTAACAATCACGGT 59.309 50.000 5.01 0.00 0.00 4.83
3440 3664 1.338674 TGAGGCCACTAACAATCACGG 60.339 52.381 5.01 0.00 0.00 4.94
3441 3665 2.002586 CTGAGGCCACTAACAATCACG 58.997 52.381 5.01 0.00 0.00 4.35
3442 3666 1.740025 GCTGAGGCCACTAACAATCAC 59.260 52.381 5.01 0.00 0.00 3.06
3443 3667 2.113860 GCTGAGGCCACTAACAATCA 57.886 50.000 5.01 0.00 0.00 2.57
3461 3685 1.681793 TGAGTATAGAGAAGCACCGGC 59.318 52.381 0.00 0.00 41.61 6.13
3462 3686 2.952978 AGTGAGTATAGAGAAGCACCGG 59.047 50.000 0.00 0.00 0.00 5.28
3463 3687 4.817464 ACTAGTGAGTATAGAGAAGCACCG 59.183 45.833 0.00 0.00 32.65 4.94
3464 3688 7.218614 TCTACTAGTGAGTATAGAGAAGCACC 58.781 42.308 5.39 0.00 37.53 5.01
3465 3689 8.665643 TTCTACTAGTGAGTATAGAGAAGCAC 57.334 38.462 5.39 0.00 37.53 4.40
3466 3690 9.682465 TTTTCTACTAGTGAGTATAGAGAAGCA 57.318 33.333 5.39 0.00 37.53 3.91
3470 3694 9.629878 CCCTTTTTCTACTAGTGAGTATAGAGA 57.370 37.037 5.39 0.00 37.53 3.10
3471 3695 9.411189 ACCCTTTTTCTACTAGTGAGTATAGAG 57.589 37.037 5.39 0.00 37.53 2.43
3472 3696 9.406113 GACCCTTTTTCTACTAGTGAGTATAGA 57.594 37.037 5.39 0.00 37.53 1.98
3473 3697 9.186837 TGACCCTTTTTCTACTAGTGAGTATAG 57.813 37.037 5.39 0.00 37.53 1.31
3474 3698 9.710818 ATGACCCTTTTTCTACTAGTGAGTATA 57.289 33.333 5.39 0.00 37.53 1.47
3475 3699 8.611051 ATGACCCTTTTTCTACTAGTGAGTAT 57.389 34.615 5.39 0.00 37.53 2.12
3476 3700 7.894364 AGATGACCCTTTTTCTACTAGTGAGTA 59.106 37.037 5.39 0.00 37.10 2.59
3477 3701 6.726764 AGATGACCCTTTTTCTACTAGTGAGT 59.273 38.462 5.39 0.00 39.92 3.41
3478 3702 7.038659 CAGATGACCCTTTTTCTACTAGTGAG 58.961 42.308 5.39 0.00 0.00 3.51
3479 3703 6.497259 ACAGATGACCCTTTTTCTACTAGTGA 59.503 38.462 5.39 0.00 0.00 3.41
3480 3704 6.702329 ACAGATGACCCTTTTTCTACTAGTG 58.298 40.000 5.39 0.00 0.00 2.74
3481 3705 6.936968 ACAGATGACCCTTTTTCTACTAGT 57.063 37.500 0.00 0.00 0.00 2.57
3482 3706 7.063544 CGAAACAGATGACCCTTTTTCTACTAG 59.936 40.741 0.00 0.00 33.17 2.57
3483 3707 6.872020 CGAAACAGATGACCCTTTTTCTACTA 59.128 38.462 0.00 0.00 33.17 1.82
3484 3708 5.701290 CGAAACAGATGACCCTTTTTCTACT 59.299 40.000 0.00 0.00 33.17 2.57
3485 3709 5.106673 CCGAAACAGATGACCCTTTTTCTAC 60.107 44.000 0.00 0.00 33.17 2.59
3486 3710 5.001232 CCGAAACAGATGACCCTTTTTCTA 58.999 41.667 0.00 0.00 33.17 2.10
3487 3711 3.821033 CCGAAACAGATGACCCTTTTTCT 59.179 43.478 0.00 0.00 33.17 2.52
3488 3712 3.568430 ACCGAAACAGATGACCCTTTTTC 59.432 43.478 0.00 0.00 32.43 2.29
3489 3713 3.562182 ACCGAAACAGATGACCCTTTTT 58.438 40.909 0.00 0.00 0.00 1.94
3490 3714 3.223674 ACCGAAACAGATGACCCTTTT 57.776 42.857 0.00 0.00 0.00 2.27
3491 3715 2.884639 CAACCGAAACAGATGACCCTTT 59.115 45.455 0.00 0.00 0.00 3.11
3492 3716 2.504367 CAACCGAAACAGATGACCCTT 58.496 47.619 0.00 0.00 0.00 3.95
3493 3717 1.271379 CCAACCGAAACAGATGACCCT 60.271 52.381 0.00 0.00 0.00 4.34
3494 3718 1.165270 CCAACCGAAACAGATGACCC 58.835 55.000 0.00 0.00 0.00 4.46
3495 3719 1.892209 ACCAACCGAAACAGATGACC 58.108 50.000 0.00 0.00 0.00 4.02
3496 3720 3.435671 CCTTACCAACCGAAACAGATGAC 59.564 47.826 0.00 0.00 0.00 3.06
3497 3721 3.558321 CCCTTACCAACCGAAACAGATGA 60.558 47.826 0.00 0.00 0.00 2.92
3498 3722 2.747446 CCCTTACCAACCGAAACAGATG 59.253 50.000 0.00 0.00 0.00 2.90
3499 3723 2.878526 GCCCTTACCAACCGAAACAGAT 60.879 50.000 0.00 0.00 0.00 2.90
3500 3724 1.543871 GCCCTTACCAACCGAAACAGA 60.544 52.381 0.00 0.00 0.00 3.41
3501 3725 0.879090 GCCCTTACCAACCGAAACAG 59.121 55.000 0.00 0.00 0.00 3.16
3502 3726 0.537828 GGCCCTTACCAACCGAAACA 60.538 55.000 0.00 0.00 0.00 2.83
3503 3727 0.251033 AGGCCCTTACCAACCGAAAC 60.251 55.000 0.00 0.00 0.00 2.78
3504 3728 0.479378 AAGGCCCTTACCAACCGAAA 59.521 50.000 0.00 0.00 0.00 3.46
3505 3729 0.479378 AAAGGCCCTTACCAACCGAA 59.521 50.000 0.00 0.00 0.00 4.30
3506 3730 0.479378 AAAAGGCCCTTACCAACCGA 59.521 50.000 0.00 0.00 0.00 4.69
3507 3731 0.601057 CAAAAGGCCCTTACCAACCG 59.399 55.000 0.00 0.00 0.00 4.44
3508 3732 1.616865 GACAAAAGGCCCTTACCAACC 59.383 52.381 0.00 0.00 0.00 3.77
3509 3733 1.616865 GGACAAAAGGCCCTTACCAAC 59.383 52.381 0.00 0.00 0.00 3.77
3510 3734 1.481615 GGGACAAAAGGCCCTTACCAA 60.482 52.381 0.00 0.00 41.31 3.67
3511 3735 0.113580 GGGACAAAAGGCCCTTACCA 59.886 55.000 0.00 0.00 41.31 3.25
3512 3736 0.113580 TGGGACAAAAGGCCCTTACC 59.886 55.000 8.08 0.00 44.96 2.85
3513 3737 1.203013 ACTGGGACAAAAGGCCCTTAC 60.203 52.381 8.08 0.00 44.96 2.34
3514 3738 1.154430 ACTGGGACAAAAGGCCCTTA 58.846 50.000 8.08 0.00 44.96 2.69
3515 3739 0.264657 AACTGGGACAAAAGGCCCTT 59.735 50.000 8.08 0.00 44.96 3.95
3516 3740 0.469892 CAACTGGGACAAAAGGCCCT 60.470 55.000 8.08 0.00 44.96 5.19
3517 3741 0.759060 ACAACTGGGACAAAAGGCCC 60.759 55.000 0.00 0.00 44.93 5.80
3518 3742 1.119684 AACAACTGGGACAAAAGGCC 58.880 50.000 0.00 0.00 38.70 5.19
3519 3743 1.754226 TCAACAACTGGGACAAAAGGC 59.246 47.619 0.00 0.00 38.70 4.35
3520 3744 3.430236 GGTTCAACAACTGGGACAAAAGG 60.430 47.826 0.00 0.00 38.70 3.11
3521 3745 3.733684 CGGTTCAACAACTGGGACAAAAG 60.734 47.826 0.00 0.00 38.70 2.27
3522 3746 2.164624 CGGTTCAACAACTGGGACAAAA 59.835 45.455 0.00 0.00 38.70 2.44
3523 3747 1.746220 CGGTTCAACAACTGGGACAAA 59.254 47.619 0.00 0.00 38.70 2.83
3524 3748 1.384525 CGGTTCAACAACTGGGACAA 58.615 50.000 0.00 0.00 38.70 3.18
3525 3749 3.088259 CGGTTCAACAACTGGGACA 57.912 52.632 0.00 0.00 35.47 4.02
3530 3754 2.536761 TAGTCCCGGTTCAACAACTG 57.463 50.000 0.00 0.00 38.49 3.16
3531 3755 3.564053 TTTAGTCCCGGTTCAACAACT 57.436 42.857 0.00 0.00 32.50 3.16
3532 3756 3.004002 CCTTTTAGTCCCGGTTCAACAAC 59.996 47.826 0.00 0.00 0.00 3.32
3533 3757 3.215975 CCTTTTAGTCCCGGTTCAACAA 58.784 45.455 0.00 0.00 0.00 2.83
3534 3758 2.173143 ACCTTTTAGTCCCGGTTCAACA 59.827 45.455 0.00 0.00 0.00 3.33
3535 3759 2.810274 GACCTTTTAGTCCCGGTTCAAC 59.190 50.000 0.00 0.00 0.00 3.18
3536 3760 2.548493 CGACCTTTTAGTCCCGGTTCAA 60.548 50.000 0.00 0.00 32.91 2.69
3537 3761 1.001181 CGACCTTTTAGTCCCGGTTCA 59.999 52.381 0.00 0.00 32.91 3.18
3538 3762 1.001293 ACGACCTTTTAGTCCCGGTTC 59.999 52.381 0.00 0.00 32.91 3.62
3539 3763 1.051008 ACGACCTTTTAGTCCCGGTT 58.949 50.000 0.00 0.00 32.91 4.44
3540 3764 1.051008 AACGACCTTTTAGTCCCGGT 58.949 50.000 0.00 0.00 32.91 5.28
3541 3765 2.232208 AGTAACGACCTTTTAGTCCCGG 59.768 50.000 0.00 0.00 32.91 5.73
3542 3766 3.582714 AGTAACGACCTTTTAGTCCCG 57.417 47.619 0.00 0.00 32.91 5.14
3543 3767 5.292834 GCATTAGTAACGACCTTTTAGTCCC 59.707 44.000 0.00 0.00 32.91 4.46
3544 3768 5.292834 GGCATTAGTAACGACCTTTTAGTCC 59.707 44.000 0.00 0.00 32.91 3.85
3545 3769 5.292834 GGGCATTAGTAACGACCTTTTAGTC 59.707 44.000 0.00 0.00 0.00 2.59
3546 3770 5.046087 AGGGCATTAGTAACGACCTTTTAGT 60.046 40.000 0.00 0.00 0.00 2.24
3547 3771 5.425630 AGGGCATTAGTAACGACCTTTTAG 58.574 41.667 0.00 0.00 0.00 1.85
3548 3772 5.425196 AGGGCATTAGTAACGACCTTTTA 57.575 39.130 0.00 0.00 0.00 1.52
3549 3773 4.296621 AGGGCATTAGTAACGACCTTTT 57.703 40.909 0.00 0.00 0.00 2.27
3550 3774 3.994931 AGGGCATTAGTAACGACCTTT 57.005 42.857 0.00 0.00 0.00 3.11
3551 3775 3.181468 GCTAGGGCATTAGTAACGACCTT 60.181 47.826 9.02 0.00 38.54 3.50
3552 3776 2.364647 GCTAGGGCATTAGTAACGACCT 59.635 50.000 8.71 8.71 38.54 3.85
3553 3777 2.547430 GGCTAGGGCATTAGTAACGACC 60.547 54.545 0.00 0.00 40.87 4.79
3554 3778 2.101917 TGGCTAGGGCATTAGTAACGAC 59.898 50.000 0.00 0.00 40.87 4.34
3555 3779 2.101917 GTGGCTAGGGCATTAGTAACGA 59.898 50.000 0.00 0.00 40.92 3.85
3556 3780 2.102588 AGTGGCTAGGGCATTAGTAACG 59.897 50.000 0.00 0.00 40.92 3.18
3557 3781 3.840124 AGTGGCTAGGGCATTAGTAAC 57.160 47.619 0.00 0.00 40.92 2.50
3558 3782 4.553678 AGTAGTGGCTAGGGCATTAGTAA 58.446 43.478 0.00 0.00 40.92 2.24
3559 3783 4.194678 AGTAGTGGCTAGGGCATTAGTA 57.805 45.455 0.00 0.00 40.92 1.82
3560 3784 3.047695 AGTAGTGGCTAGGGCATTAGT 57.952 47.619 0.00 0.00 40.92 2.24
3561 3785 5.546621 TTTAGTAGTGGCTAGGGCATTAG 57.453 43.478 0.00 0.00 40.92 1.73
3562 3786 5.961398 TTTTAGTAGTGGCTAGGGCATTA 57.039 39.130 0.00 0.00 40.92 1.90
3563 3787 4.855298 TTTTAGTAGTGGCTAGGGCATT 57.145 40.909 0.00 0.00 40.92 3.56
3564 3788 4.855298 TTTTTAGTAGTGGCTAGGGCAT 57.145 40.909 0.00 0.00 40.92 4.40
3583 3807 1.810755 GCGCCACTAGTAAGCCTTTTT 59.189 47.619 10.58 0.00 0.00 1.94
3584 3808 1.271163 TGCGCCACTAGTAAGCCTTTT 60.271 47.619 4.18 0.00 0.00 2.27
3585 3809 0.323629 TGCGCCACTAGTAAGCCTTT 59.676 50.000 4.18 0.00 0.00 3.11
3586 3810 0.391263 GTGCGCCACTAGTAAGCCTT 60.391 55.000 4.18 0.00 0.00 4.35
3587 3811 1.218316 GTGCGCCACTAGTAAGCCT 59.782 57.895 4.18 0.00 0.00 4.58
3588 3812 1.814169 GGTGCGCCACTAGTAAGCC 60.814 63.158 12.58 5.45 34.40 4.35
3589 3813 1.079405 TGGTGCGCCACTAGTAAGC 60.079 57.895 16.89 0.43 40.46 3.09
3590 3814 3.050703 CTGGTGCGCCACTAGTAAG 57.949 57.895 16.89 0.00 40.46 2.34
3594 3818 0.238289 CAAAACTGGTGCGCCACTAG 59.762 55.000 16.89 17.26 46.13 2.57
3595 3819 1.791103 GCAAAACTGGTGCGCCACTA 61.791 55.000 16.89 0.00 40.46 2.74
3596 3820 3.119193 CAAAACTGGTGCGCCACT 58.881 55.556 16.89 3.24 40.46 4.00
3597 3821 2.658268 GCAAAACTGGTGCGCCAC 60.658 61.111 16.89 0.00 40.46 5.01
3598 3822 2.967507 TAGGCAAAACTGGTGCGCCA 62.968 55.000 19.93 19.93 45.47 5.69
3599 3823 2.265182 TAGGCAAAACTGGTGCGCC 61.265 57.895 10.11 10.11 43.18 6.53
3600 3824 1.081442 GTAGGCAAAACTGGTGCGC 60.081 57.895 0.00 0.00 43.18 6.09
3601 3825 1.803334 TAGTAGGCAAAACTGGTGCG 58.197 50.000 0.00 0.00 43.18 5.34
3602 3826 3.119495 CCATTAGTAGGCAAAACTGGTGC 60.119 47.826 0.00 0.00 41.45 5.01
3603 3827 4.701956 CCATTAGTAGGCAAAACTGGTG 57.298 45.455 0.00 0.00 0.00 4.17
3614 3838 2.361119 TCAGTAGTGCGCCATTAGTAGG 59.639 50.000 4.18 0.00 0.00 3.18
3615 3839 3.710326 TCAGTAGTGCGCCATTAGTAG 57.290 47.619 4.18 0.00 0.00 2.57
3616 3840 3.798889 GCATCAGTAGTGCGCCATTAGTA 60.799 47.826 4.18 0.00 32.29 1.82
3617 3841 2.826428 CATCAGTAGTGCGCCATTAGT 58.174 47.619 4.18 0.00 0.00 2.24
3618 3842 1.528586 GCATCAGTAGTGCGCCATTAG 59.471 52.381 4.18 0.00 32.29 1.73
3619 3843 1.581934 GCATCAGTAGTGCGCCATTA 58.418 50.000 4.18 0.00 32.29 1.90
3620 3844 2.397751 GCATCAGTAGTGCGCCATT 58.602 52.632 4.18 0.00 32.29 3.16
3621 3845 4.131376 GCATCAGTAGTGCGCCAT 57.869 55.556 4.18 0.00 32.29 4.40
3626 3850 0.179111 TAGTGGCGCATCAGTAGTGC 60.179 55.000 10.83 0.00 41.56 4.40
3627 3851 1.845266 CTAGTGGCGCATCAGTAGTG 58.155 55.000 10.83 0.00 36.45 2.74
3628 3852 0.103208 GCTAGTGGCGCATCAGTAGT 59.897 55.000 21.88 4.28 40.79 2.73
3629 3853 0.103026 TGCTAGTGGCGCATCAGTAG 59.897 55.000 18.75 18.75 45.43 2.57
3630 3854 2.198183 TGCTAGTGGCGCATCAGTA 58.802 52.632 10.83 5.34 45.43 2.74
3631 3855 2.981302 TGCTAGTGGCGCATCAGT 59.019 55.556 10.83 4.26 45.43 3.41
3639 3863 4.697756 TGGCGTGGTGCTAGTGGC 62.698 66.667 0.00 0.00 45.43 5.01
3640 3864 1.884075 TAGTGGCGTGGTGCTAGTGG 61.884 60.000 0.00 0.00 45.43 4.00
3641 3865 0.458543 CTAGTGGCGTGGTGCTAGTG 60.459 60.000 0.00 0.00 45.43 2.74
3642 3866 0.611062 TCTAGTGGCGTGGTGCTAGT 60.611 55.000 0.00 0.00 45.43 2.57
3643 3867 0.530744 TTCTAGTGGCGTGGTGCTAG 59.469 55.000 0.00 0.00 45.43 3.42
3644 3868 1.191535 ATTCTAGTGGCGTGGTGCTA 58.808 50.000 0.00 0.00 45.43 3.49
3645 3869 1.191535 TATTCTAGTGGCGTGGTGCT 58.808 50.000 0.00 0.00 45.43 4.40
3646 3870 2.240493 ATATTCTAGTGGCGTGGTGC 57.760 50.000 0.00 0.00 45.38 5.01
3647 3871 5.815740 ACTAAAATATTCTAGTGGCGTGGTG 59.184 40.000 0.51 0.00 0.00 4.17
3648 3872 5.985911 ACTAAAATATTCTAGTGGCGTGGT 58.014 37.500 0.51 0.00 0.00 4.16
3649 3873 8.495949 CATTACTAAAATATTCTAGTGGCGTGG 58.504 37.037 11.07 0.00 30.98 4.94
3650 3874 8.495949 CCATTACTAAAATATTCTAGTGGCGTG 58.504 37.037 11.07 5.24 30.98 5.34
3651 3875 8.208903 ACCATTACTAAAATATTCTAGTGGCGT 58.791 33.333 11.07 0.92 30.98 5.68
3652 3876 8.603242 ACCATTACTAAAATATTCTAGTGGCG 57.397 34.615 11.07 0.59 30.98 5.69
3676 3900 2.513897 GGCGCACCTGTGGGATAC 60.514 66.667 17.33 3.95 45.10 2.24
3677 3901 1.920734 AATGGCGCACCTGTGGGATA 61.921 55.000 17.33 6.07 45.10 2.59
3678 3902 1.920734 TAATGGCGCACCTGTGGGAT 61.921 55.000 17.33 1.21 45.10 3.85
3679 3903 2.535485 CTAATGGCGCACCTGTGGGA 62.535 60.000 17.33 0.00 45.10 4.37
3680 3904 2.045438 TAATGGCGCACCTGTGGG 60.045 61.111 10.83 9.73 45.07 4.61
3681 3905 0.107897 TACTAATGGCGCACCTGTGG 60.108 55.000 10.83 0.00 36.63 4.17
3682 3906 1.867233 GATACTAATGGCGCACCTGTG 59.133 52.381 10.83 0.00 36.63 3.66
3683 3907 1.202651 GGATACTAATGGCGCACCTGT 60.203 52.381 10.83 3.52 36.63 4.00
3684 3908 1.512926 GGATACTAATGGCGCACCTG 58.487 55.000 10.83 0.00 36.63 4.00
3685 3909 0.396811 GGGATACTAATGGCGCACCT 59.603 55.000 10.83 0.00 36.63 4.00
3686 3910 0.107831 TGGGATACTAATGGCGCACC 59.892 55.000 10.83 0.00 0.00 5.01
3687 3911 1.226746 GTGGGATACTAATGGCGCAC 58.773 55.000 10.83 0.00 37.11 5.34
3688 3912 0.833949 TGTGGGATACTAATGGCGCA 59.166 50.000 10.83 0.00 0.00 6.09
3689 3913 1.512926 CTGTGGGATACTAATGGCGC 58.487 55.000 0.00 0.00 0.00 6.53
3690 3914 1.416401 ACCTGTGGGATACTAATGGCG 59.584 52.381 0.00 0.00 36.25 5.69
3691 3915 2.851195 CACCTGTGGGATACTAATGGC 58.149 52.381 0.00 0.00 36.25 4.40
3692 3916 2.487265 GGCACCTGTGGGATACTAATGG 60.487 54.545 0.00 0.00 36.25 3.16
3693 3917 2.851195 GGCACCTGTGGGATACTAATG 58.149 52.381 0.00 0.00 36.25 1.90
3708 3932 8.620851 TAGTATACCAGTTACTAATGGGGCACC 61.621 44.444 0.00 0.00 41.13 5.01
3709 3933 2.801077 ACCAGTTACTAATGGGGCAC 57.199 50.000 0.00 0.00 41.13 5.01
3710 3934 5.221303 AGTATACCAGTTACTAATGGGGCA 58.779 41.667 0.00 0.00 41.13 5.36
3711 3935 5.820404 AGTATACCAGTTACTAATGGGGC 57.180 43.478 0.00 0.00 41.13 5.80
3716 3940 7.095270 GCGCCATTAGTATACCAGTTACTAAT 58.905 38.462 0.00 9.28 46.39 1.73
3717 3941 6.040729 TGCGCCATTAGTATACCAGTTACTAA 59.959 38.462 4.18 5.94 42.95 2.24
3718 3942 5.535783 TGCGCCATTAGTATACCAGTTACTA 59.464 40.000 4.18 0.00 32.35 1.82
3719 3943 4.342951 TGCGCCATTAGTATACCAGTTACT 59.657 41.667 4.18 0.00 34.40 2.24
3720 3944 4.624015 TGCGCCATTAGTATACCAGTTAC 58.376 43.478 4.18 0.00 0.00 2.50
3721 3945 4.940905 TGCGCCATTAGTATACCAGTTA 57.059 40.909 4.18 0.00 0.00 2.24
3722 3946 3.830744 TGCGCCATTAGTATACCAGTT 57.169 42.857 4.18 0.00 0.00 3.16
3723 3947 3.323691 TGATGCGCCATTAGTATACCAGT 59.676 43.478 4.18 0.00 0.00 4.00
3724 3948 3.925379 TGATGCGCCATTAGTATACCAG 58.075 45.455 4.18 0.00 0.00 4.00
3725 3949 3.576550 TCTGATGCGCCATTAGTATACCA 59.423 43.478 4.18 0.00 30.87 3.25
3726 3950 4.188247 TCTGATGCGCCATTAGTATACC 57.812 45.455 4.18 0.00 30.87 2.73
3727 3951 4.568359 CCATCTGATGCGCCATTAGTATAC 59.432 45.833 12.17 0.00 30.87 1.47
3728 3952 4.466015 TCCATCTGATGCGCCATTAGTATA 59.534 41.667 12.17 0.00 30.87 1.47
3729 3953 3.261643 TCCATCTGATGCGCCATTAGTAT 59.738 43.478 12.17 0.00 30.87 2.12
3730 3954 2.632512 TCCATCTGATGCGCCATTAGTA 59.367 45.455 12.17 0.00 30.87 1.82
3731 3955 1.417517 TCCATCTGATGCGCCATTAGT 59.582 47.619 12.17 0.00 30.87 2.24
3732 3956 2.174363 TCCATCTGATGCGCCATTAG 57.826 50.000 12.17 5.13 0.00 1.73
3733 3957 2.158769 ACTTCCATCTGATGCGCCATTA 60.159 45.455 12.17 0.00 0.00 1.90
3734 3958 1.315690 CTTCCATCTGATGCGCCATT 58.684 50.000 12.17 0.00 0.00 3.16
3735 3959 0.182061 ACTTCCATCTGATGCGCCAT 59.818 50.000 12.17 0.00 0.00 4.40
3736 3960 0.745486 CACTTCCATCTGATGCGCCA 60.745 55.000 12.17 0.00 0.00 5.69
3737 3961 2.020131 CACTTCCATCTGATGCGCC 58.980 57.895 12.17 0.00 0.00 6.53
3738 3962 1.354506 GCACTTCCATCTGATGCGC 59.645 57.895 12.17 0.00 0.00 6.09
3740 3964 1.354506 GCGCACTTCCATCTGATGC 59.645 57.895 12.17 0.35 0.00 3.91
3741 3965 0.745486 TGGCGCACTTCCATCTGATG 60.745 55.000 10.83 10.71 0.00 3.07
3742 3966 0.182061 ATGGCGCACTTCCATCTGAT 59.818 50.000 10.83 0.00 40.08 2.90
3743 3967 0.035152 AATGGCGCACTTCCATCTGA 60.035 50.000 10.83 0.00 43.13 3.27
3744 3968 1.600957 CTAATGGCGCACTTCCATCTG 59.399 52.381 10.83 0.00 43.13 2.90
3745 3969 1.210478 ACTAATGGCGCACTTCCATCT 59.790 47.619 10.83 0.00 43.13 2.90
3746 3970 1.668419 ACTAATGGCGCACTTCCATC 58.332 50.000 10.83 0.00 43.13 3.51
3747 3971 2.943033 GTTACTAATGGCGCACTTCCAT 59.057 45.455 10.83 0.00 45.70 3.41
3748 3972 2.289756 TGTTACTAATGGCGCACTTCCA 60.290 45.455 10.83 0.00 38.09 3.53
3749 3973 2.352388 TGTTACTAATGGCGCACTTCC 58.648 47.619 10.83 0.00 0.00 3.46
3750 3974 4.616181 AATGTTACTAATGGCGCACTTC 57.384 40.909 10.83 0.00 0.00 3.01
3751 3975 5.385509 AAAATGTTACTAATGGCGCACTT 57.614 34.783 10.83 4.06 0.00 3.16
3752 3976 6.503589 TTAAAATGTTACTAATGGCGCACT 57.496 33.333 10.83 0.00 0.00 4.40
3753 3977 7.569677 TTTTAAAATGTTACTAATGGCGCAC 57.430 32.000 10.83 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.